Created
June 17, 2024 18:30
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/217449 (:no_entry:) running on GitHub PR neuronsimulator/nrn#2909.
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1718645791:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1718645791:resolve_secrets [0Ksection_start:1718645791:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1454955175, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 217449, build ref , job ID 1322078 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1322078_PROD_P2160_CP0_C0 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2255389 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322078_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449 --ntasks=2 --jobid=2255389 --cpus-per-task=8 --mem=160G | |
| section_end:1718645792:prepare_executor [0Ksection_start:1718645792:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n21 via bbpv1.epfl.ch... | |
| section_end:1718645796:prepare_script [0Ksection_start:1718645796:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1718645797:get_sources [0Ksection_start:1718645797:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=252704 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1718645822:restore_cache [0Ksection_start:1718645822:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1322077)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=253074 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1322077 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1718645824:download_artifacts [0Ksection_start:1718645824:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449/J1322078_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2255389/ccache | |
| Config file: /nvme/bbpcihpcproj12/2255389/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Mon Jun 17 19:37:26 2024 | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (90.13%) | |
| Files: 10510 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| Concretized | |
| -------------------------------- | |
| - loypyy5 neuron@git.2f572ccaec95275624d10698f5085839da1fef61=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - fz3oxtc ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] 53hy2ex ^nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| ==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul [45/49] | |
| ==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul found: installing from source | |
| ==> No patches needed for libsonata-report | |
| ==> libsonata-report: Executing phase: 'cmake' | |
| ==> libsonata-report: Executing phase: 'build' | |
| ==> libsonata-report: Executing phase: 'install' | |
| ==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul | |
| Stage: 2.39s. Cmake: 5.22s. Build: 8.61s. Install: 0.11s. Post-install: 0.10s. Total: 16.58s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| ==> Installing neuron-git.2f572ccaec95275624d10698f5085839da1fef61=develop-loypyy5amyvdkhokui7x62xnowl5u5fl [49/49] | |
| ==> No binary for neuron-git.2f572ccaec95275624d10698f5085839da1fef61=develop-loypyy5amyvdkhokui7x62xnowl5u5fl found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 2: | |
| 'make' '-j8' | |
| 34 errors found in build log: | |
| 2757 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage | |
| _externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak | |
| e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572cc | |
| aec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xn | |
| owl5u5fl/spack-build-loypyy5/bin/nrnivmodl-core -b STATIC -m /gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/i | |
| nstall_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46 | |
| 770aa12665_develop-53hy2e/bin/nmodl -n internal -p 4 . | |
| 2758 [ 35%] Built target coreneuron-for-tests | |
| 2759 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron | |
| -git.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvd | |
| khokui7x62xnowl5u5fl/spack-build-loypyy5/bin', compiling default o | |
| nes only! | |
| 2760 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl | |
| 5u5fl/spack-build-loypyy5 MECHLIB_SUFFIX=internal NMODL_BINARY=/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software | |
| /install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d | |
| 46770aa12665_develop-53hy2e/bin/nmodl MODS_PATH=x86_64/corenrn/mod | |
| 2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0 | |
| 2761 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkho | |
| kui7x62xnowl5u5fl/spack-build-loypyy5/bin' | |
| 2762 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 2763 make[3]: xcrun: No such file or directory | |
| 2764 Default NMODL flags: | |
| >> 2765 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 2766 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2767 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2768 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2769 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 2770 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5' | |
| 2771 [ 35%] Built target nrnpython | |
| ... | |
| 3682 INFO:root:Extension common compile flags defaultdict(<class 'list' | |
| >, {'library_dirs': ['/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572 | |
| ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62 | |
| xnowl5u5fl/spack-build-loypyy5/lib'], 'libraries': ['nrniv'], 'lan | |
| guage': 'c++'}) | |
| 3683 INFO:root:RX3D is DISABLED | |
| 3684 [ 49%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/oc | |
| kludge.cpp.o | |
| 3685 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217449/J1322075/spack/lib/spack/env/oneapi/icpx -DCOR | |
| ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN | |
| D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP | |
| ICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572 | |
| ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62 | |
| xnowl5u5fl/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron | |
| -git.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvd | |
| khokui7x62xnowl5u5fl/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spac | |
| k-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develo | |
| p-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/src/nrniv -I/gpfs/bbp | |
| .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack | |
| -build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1f | |
| ef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/src/nrnoc | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13 | |
| 22078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f | |
| 5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src | |
| /src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21 | |
| 7449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec9527562 | |
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| cproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572c | |
| caec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62x | |
| nowl5u5fl/spack-build-loypyy5/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack | |
| -stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop | |
| -loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy5/src/nrnoc -I | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
| 078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50 | |
| 85839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build | |
| -loypyy5/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f | |
| 572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7 | |
| x62xnowl5u5fl/spack-build-loypyy5/src/oc -I/gpfs/bbp.cscs.ch/ssd/g | |
| itlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-s | |
| tage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-l | |
| oypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy5/src/parallel - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J132 | |
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| 085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-buil | |
| d-loypyy5/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f | |
| 572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7 | |
| x62xnowl5u5fl/spack-build-loypyy5/src/sundials/shared -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack- | |
| build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fe | |
| f61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/src -I/gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/s | |
| pack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839 | |
| da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/src/gn | |
| u -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J | |
| 1322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d1069 | |
| 8f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-s | |
| rc/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec9 | |
| 5275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5 | |
| u5fl/spack-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron- | |
| git.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdk | |
| hokui7x62xnowl5u5fl/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack | |
| -stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop | |
| -loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/src/scopmath -I/gpfs/b | |
| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spa | |
| ck-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da | |
| 1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/src/spar | |
| se -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/ | |
| J1322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d106 | |
| 98f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack- | |
| src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp | |
| roj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572cca | |
| ec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xno | |
| wl5u5fl/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuro | |
| n-git.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyv | |
| dkhokui7x62xnowl5u5fl/spack-src/src/sundials/cvodes -I/gpfs/bbp.cs | |
| cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-bu | |
| ild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef6 | |
| 1_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/src/sundials/ | |
| ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449 | |
| /J1322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10 | |
| 698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack | |
| -src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b | |
| bpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git. | |
| 2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhoku | |
| i7x62xnowl5u5fl/spack-build-loypyy5/src/nrniv/oc_generated -I/gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/s | |
| pack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839 | |
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| os -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/ | |
| J1322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d106 | |
| 98f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack- | |
| src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f57 | |
| 2ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x6 | |
| 2xnowl5u5fl/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/ | |
| gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack- | |
| stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop- | |
| loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/src/nrnpython/../nrnoc | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13 | |
| 22078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f | |
| 5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src | |
| /src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f | |
| 572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7 | |
| x62xnowl5u5fl/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/src/nrnpython/../n | |
| rnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174 | |
| 49/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d | |
| 10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spa | |
| ck-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024 | |
| -02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj | |
| 4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuro | |
| n-git.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyv | |
| dkhokui7x62xnowl5u5fl/spack-src/external/eigen -march=skylake -mtu | |
| ne=skylake -fopenmp-simd -g -O1 -fp-model precise -std=c++17 -pth | |
| read -MD -MT src/nrniv/CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o - | |
| MF CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o.d -o CMakeFiles/nrniv | |
| .dir/__/oc/ockludge.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkho | |
| kui7x62xnowl5u5fl/spack-src/src/oc/ockludge.cpp | |
| 3686 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
| 078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50 | |
| 85839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build | |
| -loypyy5/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e | |
| 840f9c938be979cceb8fe0 | |
| 3687 cfiles = | |
| >> 3688 Mod files: "./follower.mod"/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02- | |
| 01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68. | |
| 0.0-p3xbqx/lib/python3.11/site-packages/setuptools/__init__.py:84: | |
| _DeprecatedInstaller: setuptools.installer and fetch_build_eggs a | |
| re deprecated. | |
| 3689 !! | |
| 3690 | |
| 3691 ********************************************************** | |
| ********************** | |
| 3692 Requirements should be satisfied by a PEP 517 installer. | |
| 3693 If you are using pip, you can try `pip install --use-pep51 | |
| 7`. | |
| 3694 ********************************************************** | |
| ********************** | |
| ... | |
| 3703 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver | |
| sion_macros.o | |
| 3704 [ 49%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/mo | |
| dlreg.cpp.o | |
| 3705 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217449/J1322075/spack/lib/spack/env/oneapi/icpx -DCOR | |
| ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN | |
| D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP | |
| ICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572 | |
| ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62 | |
| xnowl5u5fl/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron | |
| -git.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvd | |
| khokui7x62xnowl5u5fl/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spac | |
| k-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develo | |
| p-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/src/nrniv -I/gpfs/bbp | |
| .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack | |
| -build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1f | |
| ef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/src/nrnoc | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13 | |
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| /src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21 | |
| 7449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec9527562 | |
| 4d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/s | |
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| cproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572c | |
| caec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62x | |
| nowl5u5fl/spack-build-loypyy5/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack | |
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| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
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| cihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f | |
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| 1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0' | |
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| 3710 Default NMODL flags: | |
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| y | |
| 3712 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3713 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3714 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
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| n/cmake -E cmake_link_script CMakeFiles/nrniv.dir/link.txt --verbo | |
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| 4539 [ 55%] Building special[-core] for test group external_ringtest_nr | |
| n | |
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| s\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0 | |
| -skylake/m4-1\.4\.19-wtcpud/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2 | |
| 024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/bison-3\.8\ | |
| .2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_co | |
| mpilers/install_gcc-4\.8\.5-haswell/binutils-2\.41-o6yabj/bin:/gpf | |
| s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_gc | |
| c-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/compile | |
| r/2023\.2\.1/linux/lib/oclfpga/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs | |
| d/2024-02-01/stage_compilers/install_gcc-4\.8\.5-haswell/intel-one | |
| api-compilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/linux/bin/inte | |
| l64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/in | |
| stall_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y | |
| /compiler/2023\.2\.1/linux/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217449/bootstrap/store/linux-centos7-x86_64/g | |
| cc-10\.2\.1/patchelf-0\.18\.0-afv7arjarb7nzmlh7c5slkfxykybuqce/bin | |
| :/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/insta | |
| ll_gcc-12\.3\.0-skylake/ccache-4\.7\.4-eompz5/bin:/gpfs/bbp\.cscs\ | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/bin: | |
| /gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/instal | |
| l_gcc-12\.3\.0-skylake/git-2\.42\.0-sie4gc/bin:/opt/clmgr/sbin:/op | |
| t/clmgr/bin:/opt/sgi/sbin:/opt/sgi/bin:/usr/lib64/qt-3\.3/bin:/usr | |
| /lib64/ccache:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sb | |
| in:/gpfs/bbp\.cscs\.ch/ssd/apps/bb5/systemtools:/opt/c3/bin:/opt/d | |
| dn/ime/bin:/opt/puppetlabs/bin:/sbin:/bin:/gpfs/bbp\.cscs\.ch/home | |
| /bbpcihpcproj12/\.local/bin:/gpfs/bbp\.cscs\.ch/home/bbpcihpcproj1 | |
| 2/bin LD_LIBRARY_PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git\.2f | |
| 572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7 | |
| x62xnowl5u5fl/spack-build-loypyy5/lib:/gpfs/bbp\.cscs\.ch/ssd/apps | |
| /bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/intel | |
| -oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/lib/intel64:/gpfs/bbp | |
| \.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\ | |
| .3\.0-skylake/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/li | |
| b/intel64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_extern | |
| als/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/li | |
| b:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/inst | |
| all_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/c | |
| ompiler/2023\.2\.1/linux/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024 | |
| -02-01/stage_compilers/install_gcc-4\.8\.5-haswell/intel-oneapi-co | |
| mpilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/linux/lib/x64:/gpfs/ | |
| bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc- | |
| 4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/compiler/ | |
| 2023\.2\.1/linux/lib/oclfpga/host/linux64/lib:/gpfs/bbp\.cscs\.ch/ | |
| ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc-4\.8\.5-haswel | |
| l/intel-oneapi-compilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/lin | |
| ux/compiler/lib/intel64_lin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024- | |
| 02-01/stage_externals/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\. | |
| p1\.hmpt-6rr256/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st | |
| age_applications/install_gcc-12\.3\.0-skylake/hdf5-1\.14\.3-5o77ye | |
| /lib CORENRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp | |
| roj12/P217449/J1322078/spack-build/spack-stage-neuron-git\.2f572cc | |
| aec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xn | |
| owl5u5fl/spack-build-loypyy5 PYTHONPATH=/gpfs/bbp\.cscs\.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-st | |
| age-neuron-git\.2f572ccaec95275624d10698f5085839da1fef61_develop-l | |
| oypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy5/lib/python:/gp | |
| fs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13220 | |
| 78/spack-build/spack-stage-neuron-git\.2f572ccaec95275624d10698f50 | |
| 85839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/t | |
| est/rxd:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21 | |
| 7449/software/install_gcc-12\.3\.0-skylake/nmodl-git\.5ff221d045c9 | |
| 2389b4cab5ee159d46770aa12665_develop-53hy2e/lib:/gpfs/bbp\.cscs\.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_gcc- | |
| 12\.3\.0-skylake/nmodl-git\.5ff221d045c92389b4cab5ee159d46770aa126 | |
| 65_develop-53hy2e/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/ | |
| stage_applications/install_gcc-12\.3\.0-skylake/py-pytest-cov-4\.0 | |
| \.0-z5nf6n/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/a | |
| pps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake | |
| /py-coverage-7\.2\.6-wuxetk/lib/python3\.11/site-packages:/gpfs/bb | |
| p\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc | |
| -12\.3\.0-skylake/py-pytest-7\.3\.2-lrf2u3/lib/python3\.11/site-pa | |
| ckages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicati | |
| ons/install_gcc-12\.3\.0-skylake/py-iniconfig-2\.0\.0-mvxx6g/lib/p | |
| ython3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02- | |
| 01/stage_applications/install_gcc-12\.3\.0-skylake/py-pluggy-1\.0\ | |
| .0-6su7kv/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/ap | |
| ps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/ | |
| py-numpy-1\.26\.1-elr5pn/lib/python3\.11/site-packages:/gpfs/bbp\. | |
| cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12 | |
| \.3\.0-skylake/py-mpi4py-3\.1\.4-x733hw/lib/python3\.11/site-packa | |
| ges:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications | |
| /install_gcc-12\.3\.0-skylake/py-sympy-1\.11\.1-t5tove/lib/python3 | |
| \.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/sta | |
| ge_applications/install_gcc-12\.3\.0-skylake/py-mpmath-1\.2\.1-4ff | |
| lyi/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd | |
| /2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pac | |
| kaging-23\.1-uqml2t/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\ | |
| .ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\. | |
| 0-skylake/py-pyyaml-5\.4\.1-2inh3r/lib/python3\.11/site-packages:/ | |
| gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst | |
| all_gcc-12\.3\.0-skylake/py-pybind11-2\.11\.1-tabj2m/lib/python3\. | |
| 11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage | |
| _applications/install_gcc-12\.3\.0-skylake/py-jinja2-3\.1\.2-7vali | |
| d/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2 | |
| 024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-marku | |
| psafe-2\.1\.3-r3ehtm/lib/python3\.11/site-packages:/gpfs/bbp\.cscs | |
| \.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\ | |
| .0-skylake/py-find-libpython-0\.3\.1-5dylnc/lib/python3\.11/site-p | |
| ackages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicat | |
| ions/install_gcc-12\.3\.0-skylake/py-setuptools-68\.0\.0-p3xbqx/li | |
| b/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024- | |
| 02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pip-23\.1 | |
| \.2-77ku3v/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/a | |
| pps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake | |
| /py-mpi4py-3\.1\.4-x733hw/lib/python3\.11/site-packages:/gpfs/bbp\ | |
| .cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1 | |
| 2\.3\.0-skylake/py-mpmath-1\.2\.1-4fflyi/lib/python3\.11/site-pack | |
| ages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_application | |
| s/install_gcc-12\.3\.0-skylake/py-coverage-7\.2\.6-wuxetk/lib/pyth | |
| on3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/ | |
| stage_applications/install_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1- | |
| elr5pn/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/ | |
| bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py- | |
| pytest-cov-4\.0\.0-z5nf6n/lib/python3\.11/site-packages:/gpfs/bbp\ | |
| .cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1 | |
| 2\.3\.0-skylake/py-packaging-23\.1-uqml2t/lib/python3\.11/site-pac | |
| kages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicatio | |
| ns/install_gcc-12\.3\.0-skylake/py-pluggy-1\.0\.0-6su7kv/lib/pytho | |
| n3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/s | |
| tage_applications/install_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77k | |
| u3v/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd | |
| /2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sym | |
| py-1\.11\.1-t5tove/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\. | |
| ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0 | |
| -skylake/py-setuptools-68\.0\.0-p3xbqx/lib/python3\.11/site-packag | |
| es:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/ | |
| install_gcc-12\.3\.0-skylake/py-pytest-7\.3\.2-lrf2u3/lib/python3\ | |
| .11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_applications/install_gcc-12\.3\.0-skylake/py-iniconfig-2\.0\.0-m | |
| vxx6g/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/ninja-1 | |
| \.11\.1-nxtlgo/misc:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st | |
| age_externals/install_gcc-12\.3\.0-skylake/ninja-1\.11\.1-nxtlgo/m | |
| isc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J | |
| 1322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d1069 | |
| 8f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-b | |
| uild-loypyy5/bin/nrnivmodl . | |
| 4541 => Binary creating x86_64/special-core | |
| 4542 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl | |
| 5u5fl/spack-build-loypyy5 MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4543 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkho | |
| kui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/c35d2f235e0f3 | |
| 860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7' | |
| 4544 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4545 make[3]: xcrun: No such file or directory | |
| 4546 Default NMODL flags: | |
| 4547 [ 55%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod | |
| 4548 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/external/tests/red | |
| uced_dentate//mechanisms/Aradi_KDRs.mod /gpfs/bbp.cscs.ch/ssd/gitl | |
| ab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stag | |
| e-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-loyp | |
| yy5amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/53 | |
| c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Ara | |
| di_KDRs.mod | |
| 4549 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
| 078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50 | |
| 85839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build | |
| -loypyy5/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620 | |
| c807381c850fedcdd74295 | |
| 4550 cfiles = | |
| 4551 Mod files: "./halfgap.mod" | |
| 4552 | |
| 4553 Creating 'x86_64' directory for .o files. | |
| 4554 | |
| >> 4555 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4556 MODOBJS= ./halfgap.o | |
| 4557 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkho | |
| kui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/bbd7c82eee28b | |
| 931214a8172bb776ba66c406a6620c807381c850fedcdd74295/x86_64' | |
| 4558 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| 4559 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4560 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4561 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| ... | |
| 4570 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkho | |
| kui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/a9c54b18e4b54 | |
| 351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff' | |
| 4571 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| 4572 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5 | |
| fl/spack-build-loypyy5/test/nrnivmodl/bbd7c82eee28b931214a8172bb77 | |
| 6ba66c406a6620c807381c850fedcdd74295/x86_64/halfgap.cpp | |
| 4573 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4574 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4575 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| >> 4576 make[3]: xcrun: No such file or directory | |
| 4577 Default NMODL flags: | |
| 4578 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5' | |
| 4579 [ 55%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/CaBK.mod | |
| 4580 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/external/tests/red | |
| uced_dentate//mechanisms/CaBK.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neur | |
| on-git.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amy | |
| vdkhokui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/53c432f7 | |
| 080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod | |
| >> 4581 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4582 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 4583 [ 55%] Built target testneuron | |
| 4584 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4585 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4586 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4587 make -f test/external/testcorenrn/CMakeFiles/NRN_TEST_nrnivmodl_b | |
| 62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876.di | |
| r/build.make test/external/testcorenrn/CMakeFiles/NRN_TEST_nrnivmo | |
| dl_b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee87 | |
| 6.dir/depend | |
| ... | |
| 4721 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/CaDynamics_DC0.mod | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
| 078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50 | |
| 85839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build | |
| -loypyy5/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933 | |
| d5963dc6fd47c3be88641a/CaDynamics_DC0.mod | |
| 4722 [ 56%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/na3n.mod | |
| 4723 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/external/tests/red | |
| uced_dentate//mechanisms/na3n.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neur | |
| on-git.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amy | |
| vdkhokui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/53c432f7 | |
| 080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod | |
| 4724 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl | |
| 5u5fl/spack-build-loypyy5 MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4725 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkho | |
| kui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/b62f97c7d3f6d | |
| 905c774d64e10128b3300792f8f757b926b965c058a4d6ee876' | |
| 4726 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4727 make[3]: xcrun: No such file or directory | |
| 4728 Default NMODL flags: | |
| >> 4729 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4730 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4731 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4732 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4733 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4734 x86_64/corenrn/mod2c/halfgap.cpp:271:9: warning: loop not vectoriz | |
| ed: the optimizer was unable to perform the requested transformati | |
| on; the transformation might be disabled or specified as part of a | |
| n unsupported transformation ordering [-Wpass-failed=transform-war | |
| ning] | |
| 4735 #pragma omp simd | |
| ... | |
| 4860 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/external/tests/red | |
| uced_dentate//mechanisms/tca.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuro | |
| n-git.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyv | |
| dkhokui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/53c432f70 | |
| 80fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod | |
| 4861 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl | |
| 5u5fl/spack-build-loypyy5 INCFLAGS=-I/usr/include LINKFLAGS=/usr/l | |
| ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC | |
| NRN_PRCELLSTATE=0 | |
| 4862 [ 57%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/Ca_HVA2.mod | |
| 4863 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/Ca_HVA2.mod /gpfs/b | |
| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spa | |
| ck-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da | |
| 1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy | |
| 5/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc | |
| 6fd47c3be88641a/Ca_HVA2.mod | |
| 4864 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkho | |
| kui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/f7f437ac4f0ea | |
| 140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c' | |
| 4865 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4866 make[3]: xcrun: No such file or directory | |
| 4867 Default NMODL flags: | |
| 4868 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5 | |
| fl/spack-build-loypyy5/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/cagkftab.cpp | |
| >> 4869 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4870 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/bbd7c82eee28b9 | |
| 31214a8172bb776ba66c406a6620c807381c850fedcdd74295/x86_64' | |
| 4871 Successfully created x86_64/special | |
| 4872 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5' | |
| 4873 [ 57%] Building special[-core] for test group reduced_dentate | |
| 4874 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425 | |
| d200c645a6b4cec93b5edfead && cmake -E env NEURONHOME=/gpfs/bbp\.cs | |
| cs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-b | |
| uild/spack-stage-neuron-git\.2f572ccaec95275624d10698f5085839da1fe | |
| f61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy5/s | |
| hare/nrn NRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp | |
| roj12/P217449/J1322078/spack-build/spack-stage-neuron-git\.2f572cc | |
| aec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xn | |
| owl5u5fl/spack-build-loypyy5 PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-ne | |
| uron-git\.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5 | |
| amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy5/bin:/gpfs/bbp\.cscs\ | |
| .ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\. | |
| 0-skylake/readline-8\.2-pdugg7/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs | |
| d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-co | |
| verage-7\.2\.6-wuxetk/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02 | |
| -01/stage_applications/install_gcc-12\.3\.0-skylake/py-pytest-7\.3 | |
| \.2-lrf2u3/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a | |
| pplications/install_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77ku3v/bi | |
| n:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/i | |
| nstall_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/bin:/gpfs/bbp | |
| \.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/ins | |
| tall_gcc-12\.3\.0-skylake/nmodl-git\.5ff221d045c92389b4cab5ee159d4 | |
| 6770aa12665_develop-53hy2e/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20 | |
| 24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sympy- | |
| 1\.11\.1-t5tove/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st | |
| age_applications/install_gcc-12\.3\.0-skylake/py-pybind11-2\.11\.1 | |
| -tabj2m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appl | |
| ications/install_gcc-12\.3\.0-skylake/py-find-libpython-0\.3\.1-5d | |
| ylnc/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2 | |
| 17449/software/install_oneapi-2023\.2\.0-skylake/libsonata-report- | |
| git\.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt/bin:/ | |
| gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst | |
| all_gcc-12\.3\.0-skylake/gettext-0\.22\.3-nbi5w5/bin:/gpfs/bbp\.cs | |
| cs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\. | |
| 3\.0-skylake/pigz-2\.7-dwjcgu/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd | |
| /2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/ncurse | |
| s-6\.4-6kdbhv/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_applications/install_gcc-12\.3\.0-skylake/pkgconf-1\.9\.5-e533uu | |
| /bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_application | |
| s/install_gcc-12\.3\.0-skylake/gmake-4\.4\.1-swjylu/bin:/gpfs/bbp\ | |
| .cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1 | |
| 2\.3\.0-skylake/xz-5\.4\.1-wwn5en/bin:/gpfs/bbp\.cscs\.ch/ssd/apps | |
| /bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/zs | |
| td-1\.5\.5-aivjoo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/ | |
| stage_applications/install_gcc-12\.3\.0-skylake/bzip2-1\.0\.8-vdqw | |
| mg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals | |
| /install_gcc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp | |
| \.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\ | |
| .3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch/ssd/a | |
| pps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/in | |
| tel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gpfs/ | |
| bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc- | |
| 12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/bin:/gpfs/bbp\.csc | |
| s\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0 | |
| -skylake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs | |
| d/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/flex-2\. | |
| 6\.3-edx4lf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_ | |
| externals/install_gcc-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/ | |
| gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install | |
| _gcc-12\.3\.0-skylake/bison-3\.8\.2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/lib/spa | |
| ck/env/oneapi:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217449/J1322075/spack/lib/spack/env/case-insensitive:/gpfs/bbp | |
| \.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spa | |
| ck/lib/spack/env:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage | |
| _compilers/install_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023 | |
| \.2\.1-tnua5y/compiler/2023\.2\.1/linux/bin:/gpfs/bbp\.cscs\.ch/ss | |
| d/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake | |
| /intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gp | |
| fs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_g | |
| cc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch | |
| /ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skyl | |
| ake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/202 | |
| 4-02-01/stage_externals/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27 | |
| \.p1\.hmpt-6rr256/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/ | |
| stage_externals/install_gcc-12\.3\.0-skylake/flex-2\.6\.3-edx4lf/b | |
| in:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/ins | |
| tall_gcc-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/gpfs/bbp\.csc | |
| s\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0 | |
| -skylake/m4-1\.4\.19-wtcpud/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2 | |
| 024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/bison-3\.8\ | |
| .2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_co | |
| mpilers/install_gcc-4\.8\.5-haswell/binutils-2\.41-o6yabj/bin:/gpf | |
| s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_gc | |
| c-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/compile | |
| r/2023\.2\.1/linux/lib/oclfpga/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs | |
| d/2024-02-01/stage_compilers/install_gcc-4\.8\.5-haswell/intel-one | |
| api-compilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/linux/bin/inte | |
| l64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/in | |
| stall_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y | |
| /compiler/2023\.2\.1/linux/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217449/bootstrap/store/linux-centos7-x86_64/g | |
| cc-10\.2\.1/patchelf-0\.18\.0-afv7arjarb7nzmlh7c5slkfxykybuqce/bin | |
| :/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/insta | |
| ll_gcc-12\.3\.0-skylake/ccache-4\.7\.4-eompz5/bin:/gpfs/bbp\.cscs\ | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/bin: | |
| /gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/instal | |
| l_gcc-12\.3\.0-skylake/git-2\.42\.0-sie4gc/bin:/opt/clmgr/sbin:/op | |
| t/clmgr/bin:/opt/sgi/sbin:/opt/sgi/bin:/usr/lib64/qt-3\.3/bin:/usr | |
| /lib64/ccache:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sb | |
| in:/gpfs/bbp\.cscs\.ch/ssd/apps/bb5/systemtools:/opt/c3/bin:/opt/d | |
| dn/ime/bin:/opt/puppetlabs/bin:/sbin:/bin:/gpfs/bbp\.cscs\.ch/home | |
| /bbpcihpcproj12/\.local/bin:/gpfs/bbp\.cscs\.ch/home/bbpcihpcproj1 | |
| 2/bin LD_LIBRARY_PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git\.2f | |
| 572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7 | |
| x62xnowl5u5fl/spack-build-loypyy5/lib:/gpfs/bbp\.cscs\.ch/ssd/apps | |
| /bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/intel | |
| -oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/lib/intel64:/gpfs/bbp | |
| \.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\ | |
| .3\.0-skylake/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/li | |
| b/intel64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_extern | |
| als/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/li | |
| b:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/inst | |
| all_gcc-4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/c | |
| ompiler/2023\.2\.1/linux/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024 | |
| -02-01/stage_compilers/install_gcc-4\.8\.5-haswell/intel-oneapi-co | |
| mpilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/linux/lib/x64:/gpfs/ | |
| bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc- | |
| 4\.8\.5-haswell/intel-oneapi-compilers-2023\.2\.1-tnua5y/compiler/ | |
| 2023\.2\.1/linux/lib/oclfpga/host/linux64/lib:/gpfs/bbp\.cscs\.ch/ | |
| ssd/apps/bsd/2024-02-01/stage_compilers/install_gcc-4\.8\.5-haswel | |
| l/intel-oneapi-compilers-2023\.2\.1-tnua5y/compiler/2023\.2\.1/lin | |
| ux/compiler/lib/intel64_lin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024- | |
| 02-01/stage_externals/install_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\. | |
| p1\.hmpt-6rr256/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st | |
| age_applications/install_gcc-12\.3\.0-skylake/hdf5-1\.14\.3-5o77ye | |
| /lib CORENRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp | |
| roj12/P217449/J1322078/spack-build/spack-stage-neuron-git\.2f572cc | |
| aec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xn | |
| owl5u5fl/spack-build-loypyy5 PYTHONPATH=/gpfs/bbp\.cscs\.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-st | |
| age-neuron-git\.2f572ccaec95275624d10698f5085839da1fef61_develop-l | |
| oypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy5/lib/python:/gp | |
| fs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13220 | |
| 78/spack-build/spack-stage-neuron-git\.2f572ccaec95275624d10698f50 | |
| 85839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/t | |
| est/rxd:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21 | |
| 7449/software/install_gcc-12\.3\.0-skylake/nmodl-git\.5ff221d045c9 | |
| 2389b4cab5ee159d46770aa12665_develop-53hy2e/lib:/gpfs/bbp\.cscs\.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_gcc- | |
| 12\.3\.0-skylake/nmodl-git\.5ff221d045c92389b4cab5ee159d46770aa126 | |
| 65_develop-53hy2e/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/ | |
| stage_applications/install_gcc-12\.3\.0-skylake/py-pytest-cov-4\.0 | |
| \.0-z5nf6n/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/a | |
| pps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake | |
| /py-coverage-7\.2\.6-wuxetk/lib/python3\.11/site-packages:/gpfs/bb | |
| p\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc | |
| -12\.3\.0-skylake/py-pytest-7\.3\.2-lrf2u3/lib/python3\.11/site-pa | |
| ckages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicati | |
| ons/install_gcc-12\.3\.0-skylake/py-iniconfig-2\.0\.0-mvxx6g/lib/p | |
| ython3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02- | |
| 01/stage_applications/install_gcc-12\.3\.0-skylake/py-pluggy-1\.0\ | |
| .0-6su7kv/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/ap | |
| ps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/ | |
| py-numpy-1\.26\.1-elr5pn/lib/python3\.11/site-packages:/gpfs/bbp\. | |
| cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12 | |
| \.3\.0-skylake/py-mpi4py-3\.1\.4-x733hw/lib/python3\.11/site-packa | |
| ges:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications | |
| /install_gcc-12\.3\.0-skylake/py-sympy-1\.11\.1-t5tove/lib/python3 | |
| \.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/sta | |
| ge_applications/install_gcc-12\.3\.0-skylake/py-mpmath-1\.2\.1-4ff | |
| lyi/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd | |
| /2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pac | |
| kaging-23\.1-uqml2t/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\ | |
| .ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\. | |
| 0-skylake/py-pyyaml-5\.4\.1-2inh3r/lib/python3\.11/site-packages:/ | |
| gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst | |
| all_gcc-12\.3\.0-skylake/py-pybind11-2\.11\.1-tabj2m/lib/python3\. | |
| 11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage | |
| _applications/install_gcc-12\.3\.0-skylake/py-jinja2-3\.1\.2-7vali | |
| d/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2 | |
| 024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-marku | |
| psafe-2\.1\.3-r3ehtm/lib/python3\.11/site-packages:/gpfs/bbp\.cscs | |
| \.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\ | |
| .0-skylake/py-find-libpython-0\.3\.1-5dylnc/lib/python3\.11/site-p | |
| ackages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicat | |
| ions/install_gcc-12\.3\.0-skylake/py-setuptools-68\.0\.0-p3xbqx/li | |
| b/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024- | |
| 02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-pip-23\.1 | |
| \.2-77ku3v/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/a | |
| pps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake | |
| /py-mpi4py-3\.1\.4-x733hw/lib/python3\.11/site-packages:/gpfs/bbp\ | |
| .cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1 | |
| 2\.3\.0-skylake/py-mpmath-1\.2\.1-4fflyi/lib/python3\.11/site-pack | |
| ages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_application | |
| s/install_gcc-12\.3\.0-skylake/py-coverage-7\.2\.6-wuxetk/lib/pyth | |
| on3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/ | |
| stage_applications/install_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1- | |
| elr5pn/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/ | |
| bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py- | |
| pytest-cov-4\.0\.0-z5nf6n/lib/python3\.11/site-packages:/gpfs/bbp\ | |
| .cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1 | |
| 2\.3\.0-skylake/py-packaging-23\.1-uqml2t/lib/python3\.11/site-pac | |
| kages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicatio | |
| ns/install_gcc-12\.3\.0-skylake/py-pluggy-1\.0\.0-6su7kv/lib/pytho | |
| n3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/s | |
| tage_applications/install_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77k | |
| u3v/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd | |
| /2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sym | |
| py-1\.11\.1-t5tove/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\. | |
| ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0 | |
| -skylake/py-setuptools-68\.0\.0-p3xbqx/lib/python3\.11/site-packag | |
| es:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/ | |
| install_gcc-12\.3\.0-skylake/py-pytest-7\.3\.2-lrf2u3/lib/python3\ | |
| .11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_applications/install_gcc-12\.3\.0-skylake/py-iniconfig-2\.0\.0-m | |
| vxx6g/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/ninja-1 | |
| \.11\.1-nxtlgo/misc:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st | |
| age_externals/install_gcc-12\.3\.0-skylake/ninja-1\.11\.1-nxtlgo/m | |
| isc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J | |
| 1322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d1069 | |
| 8f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-b | |
| uild-loypyy5/bin/nrnivmodl -coreneuron . | |
| 4875 [ 57%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/Ca_LVAst.mod | |
| ... | |
| 5131 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/can2.mod /gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack- | |
| build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fe | |
| f61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy5/t | |
| est/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd | |
| 47c3be88641a/can2.mod | |
| 5132 [ 59%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/cat.mod | |
| 5133 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/cat.mod /gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-b | |
| uild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef | |
| 61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy5/te | |
| st/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd4 | |
| 7c3be88641a/cat.mod | |
| 5134 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl | |
| 5u5fl/spack-build-loypyy5 MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 5135 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkho | |
| kui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/53c432f7080fe | |
| 7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead' | |
| 5136 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 5137 make[3]: xcrun: No such file or directory | |
| 5138 Default NMODL flags: | |
| >> 5139 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5140 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 5141 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 5142 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 5143 [ 59%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/gap.mod | |
| 5144 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/gap.mod /gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-b | |
| uild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef | |
| 61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy5/te | |
| st/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd4 | |
| 7c3be88641a/gap.mod | |
| 5145 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| ... | |
| 5171 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 5172 [ 59%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/kadist.mod | |
| 5173 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/kadist.mod /gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spac | |
| k-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1 | |
| fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy5 | |
| /test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6 | |
| fd47c3be88641a/kadist.mod | |
| 5174 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl | |
| 5u5fl/spack-build-loypyy5 MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 5175 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkho | |
| kui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/14c92ceb412f1 | |
| b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab' | |
| 5176 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 5177 make[3]: xcrun: No such file or directory | |
| 5178 Default NMODL flags: | |
| 5179 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 5180 [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows < | |
| assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| 5181 [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows < | |
| assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| 5182 [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows < | |
| assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| >> 5183 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5184 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5185 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5186 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5187 [ 59%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/kaprox.mod | |
| 5188 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/kaprox.mod /gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spac | |
| k-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1 | |
| fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy5 | |
| /test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6 | |
| fd47c3be88641a/kaprox.mod | |
| 5189 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| ... | |
| 5723 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5 | |
| fl/spack-build-loypyy5/test/nrnivmodl/b62f97c7d3f6d905c774d64e1012 | |
| 8b3300792f8f757b926b965c058a4d6ee876/x86_64/nacum.cpp | |
| 5724 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x | |
| 62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/f7f437ac4f0ea140e8 | |
| 09f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c/x86_64/./special" L | |
| DFLAGS are: /usr/lib64/libcrypto.so | |
| 5725 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5 | |
| fl/spack-build-loypyy5/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/tstextrn.cpp | |
| 5726 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl | |
| 5u5fl/spack-build-loypyy5 MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 5727 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkho | |
| kui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/3a24bd33c51ee | |
| 30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a' | |
| 5728 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 5729 make[3]: xcrun: No such file or directory | |
| 5730 Default NMODL flags: | |
| 5731 x86_64/corenrn/mod2c/DGC_UK.cpp:392:13: warning: loop not vectoriz | |
| ed: the optimizer was unable to perform the requested transformati | |
| on; the transformation might be disabled or specified as part of a | |
| n unsupported transformation ordering [-Wpass-failed=transform-war | |
| ning] | |
| 5732 #pragma omp simd | |
| 5733 ^ | |
| 5734 x86_64/corenrn/mod2c/DGC_UK.cpp:455:9: warning: loop not vectorize | |
| d: the optimizer was unable to perform the requested transformatio | |
| n; the transformation might be disabled or specified as part of an | |
| unsupported transformation ordering [-Wpass-failed=transform-warn | |
| ing] | |
| 5735 #pragma omp simd | |
| ... | |
| 5748 ^ | |
| 5749 x86_64/corenrn/mod2c/DGC_sAHP.cpp:517:9: warning: loop not vectori | |
| zed: the optimizer was unable to perform the requested transformat | |
| ion; the transformation might be disabled or specified as part of | |
| an unsupported transformation ordering [-Wpass-failed=transform-wa | |
| rning] | |
| 5750 #pragma omp simd | |
| 5751 ^ | |
| 5752 3 warnings generated. | |
| 5753 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5 | |
| fl/spack-build-loypyy5/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/tstpnt2.cpp | |
| >> 5754 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5755 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/f7f437ac4f0ea1 | |
| 40e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c/x86_64' | |
| 5756 Successfully created x86_64/special | |
| 5757 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5 | |
| fl/spack-build-loypyy5/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/tstvec.cpp | |
| 5758 x86_64/corenrn/mod2c/unitstest.cpp:283:13: warning: loop not vecto | |
| rized: the optimizer was unable to perform the requested transform | |
| ation; the transformation might be disabled or specified as part o | |
| f an unsupported transformation ordering [-Wpass-failed=transform- | |
| warning] | |
| 5759 #pragma omp simd | |
| 5760 ^ | |
| ... | |
| 6115 2 warnings generated. | |
| 6116 [ 60%] Built target generate-neurondemo-mechanism-library | |
| 6117 [ 60%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_nrnste.py | |
| 6118 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x | |
| 62xnowl5u5fl/spack-src//test/pytest_coreneuron/test_nrnste.py /gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/ | |
| spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f508583 | |
| 9da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-loy | |
| pyy5/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_coreneu | |
| ron/test_nrnste.py | |
| 6119 [ 60%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_nrntest_fast.py | |
| 6120 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x | |
| 62xnowl5u5fl/spack-src//test/pytest_coreneuron/test_nrntest_fast.p | |
| y /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13 | |
| 22078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f | |
| 5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bui | |
| ld-loypyy5/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_c | |
| oreneuron/test_nrntest_fast.py | |
| >> 6121 banocur.cpp:343:9: error: use of undeclared identifier '_globals' | |
| 6122 init ( _threadargs_ ) ; | |
| 6123 ^ | |
| 6124 banocur.cpp:53:50: note: expanded from macro '_threadargs_' | |
| 6125 #define _threadargs_ _ml, _iml, _ppvar, _thread, _globals, _nt | |
| 6126 ^ | |
| 6127 1 error generated. | |
| >> 6128 make[3]: *** [makemod2c_inc:31: banocur.o] Error 1 | |
| 6129 make[3]: *** Waiting for unfinished jobs.... | |
| 6130 make -f test/CMakeFiles/copy-scripts-datahandle-datahandle_tests. | |
| dir/build.make test/CMakeFiles/copy-scripts-datahandle-datahandle_ | |
| tests.dir/depend | |
| >> 6131 axial.cpp:243:12: error: use of undeclared identifier '_globals' | |
| 6132 foo ( _threadargs_ ) ; | |
| 6133 ^ | |
| 6134 axial.cpp:53:50: note: expanded from macro '_threadargs_' | |
| 6135 #define _threadargs_ _ml, _iml, _ppvar, _thread, _globals, _nt | |
| 6136 ^ | |
| 6137 1 error generated. | |
| >> 6138 make[3]: *** [makemod2c_inc:7: axial.o] Error 1 | |
| >> 6139 bacur.cpp:373:9: error: use of undeclared identifier '_globals' | |
| 6140 init ( _threadargs_ ) ; | |
| 6141 ^ | |
| 6142 bacur.cpp:53:50: note: expanded from macro '_threadargs_' | |
| 6143 #define _threadargs_ _ml, _iml, _ppvar, _thread, _globals, _nt | |
| 6144 ^ | |
| 6145 1 error generated. | |
| >> 6146 make[3]: *** [makemod2c_inc:23: bacur.o] Error 1 | |
| 6147 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkho | |
| kui7x62xnowl5u5fl/spack-build-loypyy5' | |
| 6148 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-bu | |
| ild-loypyy5 && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext | |
| ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E | |
| cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron | |
| -git.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvd | |
| khokui7x62xnowl5u5fl/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron- | |
| git.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdk | |
| hokui7x62xnowl5u5fl/spack-src/test /gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neu | |
| ron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5am | |
| yvdkhokui7x62xnowl5u5fl/spack-build-loypyy5 /gpfs/bbp.cscs.ch/ssd/ | |
| gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack- | |
| stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop- | |
| loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy5/test /gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spac | |
| k-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1 | |
| fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-loypyy5 | |
| /test/CMakeFiles/copy-scripts-datahandle-datahandle_tests.dir/Depe | |
| ndInfo.cmake "--color=" | |
| >> 6149 axial_pp.cpp:290:12: error: use of undeclared identifier '_globals | |
| ' | |
| 6150 foo ( _threadargs_ ) ; | |
| 6151 ^ | |
| 6152 axial_pp.cpp:53:50: note: expanded from macro '_threadargs_' | |
| 6153 #define _threadargs_ _ml, _iml, _ppvar, _thread, _globals, _nt | |
| 6154 ^ | |
| 6155 1 error generated. | |
| >> 6156 make[3]: *** [makemod2c_inc:15: axial_pp.o] Error 1 | |
| 6157 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/c35d2f235e0f38 | |
| 60fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/x86_64' | |
| >> 6158 make[2]: *** [test/CMakeFiles/NRN_TEST_nrnivmodl_c35d2f235e0f3860f | |
| becadf05ec8c2b6901bba2525195c69836276a4b5d88ca7.dir/build.make:106 | |
| : test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c698 | |
| 36276a4b5d88ca7/x86_64/special] Error 2 | |
| 6159 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5' | |
| >> 6160 make[1]: *** [CMakeFiles/Makefile2:5726: test/CMakeFiles/NRN_TEST_ | |
| nrnivmodl_c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4 | |
| b5d88ca7.dir/all] Error 2 | |
| 6161 make[1]: *** Waiting for unfinished jobs.... | |
| 6162 x86_64/corenrn/mod2c/Ca_HVA.cpp:259:16: warning: equality comparis | |
| on with extraneous parentheses [-Wparentheses-equality] | |
| 6163 if ((v == -27.0)) { | |
| 6164 ~~^~~~~~~~~ | |
| 6165 x86_64/corenrn/mod2c/Ca_HVA.cpp:259:16: note: remove extraneous pa | |
| rentheses around the comparison to silence this warning | |
| 6166 if ((v == -27.0)) { | |
| ... | |
| 6548 #pragma omp simd | |
| 6549 ^ | |
| 6550 x86_64/corenrn/mod2c/NaTa_t.cpp:407:9: warning: loop not vectorize | |
| d: the optimizer was unable to perform the requested transformatio | |
| n; the transformation might be disabled or specified as part of an | |
| unsupported transformation ordering [-Wpass-failed=transform-warn | |
| ing] | |
| 6551 #pragma omp simd | |
| 6552 ^ | |
| 6553 3 warnings generated. | |
| >> 6554 ampanmda.cpp:605:36: error: use of undeclared identifier '_globals | |
| ' | |
| 6555 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] ) ; | |
| 6556 ^ | |
| 6557 ampanmda.cpp:49:55: note: expanded from macro '_threadargscomma_' | |
| 6558 #define _threadargscomma_ _ml, _iml, _ppvar, _thread, _globals, _n | |
| t, | |
| 6559 ^ | |
| 6560 1 error generated. | |
| >> 6561 make[3]: *** [makemod2c_inc:23: ampanmda.o] Error 1 | |
| 6562 make[3]: *** Waiting for unfinished jobs.... | |
| 6563 x86_64/corenrn/mod2c/NaTg.cpp:315:13: warning: loop not vectorized | |
| : the optimizer was unable to perform the requested transformation | |
| ; the transformation might be disabled or specified as part of an | |
| unsupported transformation ordering [-Wpass-failed=transform-warni | |
| ng] | |
| 6564 #pragma omp simd | |
| 6565 ^ | |
| 6566 x86_64/corenrn/mod2c/NaTg.cpp:382:9: warning: loop not vectorized: | |
| the optimizer was unable to perform the requested transformation; | |
| the transformation might be disabled or specified as part of an u | |
| nsupported transformation ordering [-Wpass-failed=transform-warnin | |
| g] | |
| 6567 #pragma omp simd | |
| 6568 ^ | |
| 6569 x86_64/corenrn/mod2c/NaTg.cpp:419:9: warning: loop not vectorized: | |
| the optimizer was unable to perform the requested transformation; | |
| the transformation might be disabled or specified as part of an u | |
| nsupported transformation ordering [-Wpass-failed=transform-warnin | |
| g] | |
| 6570 #pragma omp simd | |
| 6571 ^ | |
| 6572 3 warnings generated. | |
| 6573 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/14c92ceb412f1b | |
| 4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/x86_64' | |
| >> 6574 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_ | |
| nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068 | |
| 9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd | |
| a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2 | |
| 6575 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5' | |
| >> 6576 make[1]: *** [CMakeFiles/Makefile2:9702: test/external/olfactory-b | |
| ulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec7 | |
| 5b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2 | |
| 6577 x86_64/corenrn/mod2c/NaTs2_t.cpp:303:13: warning: loop not vectori | |
| zed: the optimizer was unable to perform the requested transformat | |
| ion; the transformation might be disabled or specified as part of | |
| an unsupported transformation ordering [-Wpass-failed=transform-wa | |
| rning] | |
| 6578 #pragma omp simd | |
| 6579 ^ | |
| 6580 x86_64/corenrn/mod2c/NaTs2_t.cpp:370:9: warning: loop not vectoriz | |
| ed: the optimizer was unable to perform the requested transformati | |
| on; the transformation might be disabled or specified as part of a | |
| n unsupported transformation ordering [-Wpass-failed=transform-war | |
| ning] | |
| 6581 #pragma omp simd | |
| 6582 ^ | |
| ... | |
| 7369 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x | |
| 62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/3a24bd33c51ee30c68 | |
| f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64/./special" L | |
| DFLAGS are: | |
| 7370 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5/test/nrnivmodl/3a24bd33c51ee3 | |
| 0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64' | |
| 7371 Successfully created x86_64/special | |
| 7372 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5' | |
| 7373 [ 61%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1 | |
| 46a37c165552933d5963dc6fd47c3be88641a | |
| 7374 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhok | |
| ui7x62xnowl5u5fl/spack-build-loypyy5' | |
| >> 7375 make: *** [Makefile:169: all] Error 2 | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322078/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-loypyy5amyvdkhokui7x62xnowl5u5fl/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r1i7n21: task 0: Exited with exit code 1 | |
| section_end:1718647317:step_script [0Ksection_start:1718647317:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=284316 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1322078 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=284356 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1322078 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=284398 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1322078 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1718647319:upload_artifacts_on_failure [0Ksection_start:1718647319:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1718647320:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1718645792:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1718645792:resolve_secrets [0Ksection_start:1718645792:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1520834343, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 217449, build ref , job ID 1322080 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1322080_PROD_P2160_CP2_C5 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2255391 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322080_PROD_P2160_CP2_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449 --ntasks=2 --jobid=2255391 --cpus-per-task=8 --mem=160G | |
| section_end:1718645795:prepare_executor [0Ksection_start:1718645795:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n30 via bbpv1.epfl.ch... | |
| section_end:1718645801:prepare_script [0Ksection_start:1718645801:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1718645802:get_sources [0Ksection_start:1718645802:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=274698 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1718645826:restore_cache [0Ksection_start:1718645826:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1322077)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=275308 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1322077 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1718645827:download_artifacts [0Ksection_start:1718645827:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449/J1322080_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2255391/ccache | |
| Config file: /nvme/bbpcihpcproj12/2255391/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Mon Jun 17 19:37:25 2024 | |
| Local storage: | |
| Cache size (GB): 0.45 / 0.51 (88.54%) | |
| Files: 10450 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| Concretized | |
| -------------------------------- | |
| - ziqyimc neuron@git.2f572ccaec95275624d10698f5085839da1fef61=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] 53hy2ex ^nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi | |
| ==> Installing neuron-git.2f572ccaec95275624d10698f5085839da1fef61=develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt [50/50] | |
| ==> No binary for neuron-git.2f572ccaec95275624d10698f5085839da1fef61=develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 2: | |
| 'make' '-j8' | |
| 34 errors found in build log: | |
| 3035 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron | |
| -git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz | |
| 4d4wqvuub75u4ued5xqt/spack-build-ziqyimc/bin', compiling default o | |
| nes only! | |
| 3036 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i | |
| voc/htlist.cpp.o | |
| 3037 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217449/J1322075/spack/lib/spack/env/nvhpc/nvc++ -DCOR | |
| ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN | |
| D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP | |
| ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUS | |
| EMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec95275 | |
| 624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt | |
| /spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572 | |
| ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub7 | |
| 5u4ued5xqt/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-ne | |
| uron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl | |
| 57pz4d4wqvuub75u4ued5xqt/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/s | |
| sd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spa | |
| ck-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_devel | |
| op-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/nrnoc -I/gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spac | |
| k-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1 | |
| fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/oc -I | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
| 080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50 | |
| 85839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-build | |
| -ziqyimc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2 | |
| 17449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec952756 | |
| 24d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/ | |
| spack-build-ziqyimc/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neu | |
| ron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl5 | |
| 7pz4d4wqvuub75u4ued5xqt/spack-build-ziqyimc/src/nrnoc -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack- | |
| build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fe | |
| f61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-build-ziqyimc/s | |
| rc/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec95 | |
| 275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5 | |
| xqt/spack-build-ziqyimc/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuro | |
| n-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57p | |
| z4d4wqvuub75u4ued5xqt/spack-build-ziqyimc/src/parallel -I/gpfs/bbp | |
| .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack | |
| -build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1f | |
| ef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-build-ziqyimc/ | |
| src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec95 | |
| 275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5 | |
| xqt/spack-build-ziqyimc/src/sundials/shared -I/gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spac | |
| k-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develo | |
| p-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src -I/gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/gnu -I/gpfs/ | |
| bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/sp | |
| ack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839d | |
| a1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/nrn | |
| mpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449 | |
| /J1322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10 | |
| 698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack | |
| -src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp | |
| cproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572c | |
| caec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75 | |
| u4ued5xqt/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neu | |
| ron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl5 | |
| 7pz4d4wqvuub75u4ued5xqt/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/sparse -I/gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/s | |
| pack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839 | |
| da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/sp | |
| arse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217 | |
| 449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624 | |
| d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/sp | |
| ack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f57 | |
| 2ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub | |
| 75u4ued5xqt/spack-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/ | |
| gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack- | |
| stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop- | |
| ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/sundials/ida -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/ | |
| spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f508583 | |
| 9da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/s | |
| undials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ue | |
| d5xqt/spack-build-ziqyimc/src/nrniv/oc_generated -I/gpfs/bbp.cscs. | |
| ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skyl | |
| ake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-st | |
| age-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-zi | |
| qyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/ivos -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-buil | |
| d/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_ | |
| develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/nrnpython/. | |
| . -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J | |
| 1322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d1069 | |
| 8f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-s | |
| rc/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f | |
| 572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvu | |
| ub75u4ued5xqt/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/nrnpython/../i | |
| voc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449 | |
| /J1322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10 | |
| 698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack | |
| -src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-g | |
| it.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d | |
| 4wqvuub75u4ued5xqt/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-b | |
| uild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef | |
| 61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/nrnpytho | |
| n/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_extern | |
| als/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python | |
| 3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
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| qt/spack-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-poi | |
| nter --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,5 | |
| 41,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_ | |
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| htlist.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o -c | |
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| src/ivoc/htlist.cpp | |
| 3038 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
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| 2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0 | |
| 3039 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4 | |
| wqvuub75u4ued5xqt/spack-build-ziqyimc/bin' | |
| 3040 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 3041 make[3]: xcrun: No such file or directory | |
| 3042 Default NMODL flags: | |
| >> 3043 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 3044 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3045 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3046 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3047 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 3048 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i | |
| voc/idraw.cpp.o | |
| 3049 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
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| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
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| 449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624 | |
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| stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop- | |
| ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/sundials/ida -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/ | |
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| j12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec | |
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| d5xqt/spack-build-ziqyimc/src/nrniv/oc_generated -I/gpfs/bbp.cscs. | |
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| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-buil | |
| d/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_ | |
| develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/nrnpython/. | |
| . -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J | |
| 1322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d1069 | |
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| voc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449 | |
| /J1322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10 | |
| 698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack | |
| -src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-g | |
| it.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d | |
| 4wqvuub75u4ued5xqt/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.c | |
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| n/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_extern | |
| als/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python | |
| 3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5x | |
| qt/spack-src/external/eigen -tp haswell -g -O1 -fno-omit-frame-poi | |
| nter --c++17 -fPIC --diag_suppress=1,47,111,128,170,174,177,186,5 | |
| 41,550,816,2465 -noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_ | |
| lib.dir/__/ivoc/idraw.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/ivoc/i | |
| draw.cpp.o.d -o CMakeFiles/nrniv_lib.dir/__/ivoc/idraw.cpp.o -c /g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J132208 | |
| 0/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085 | |
| 839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src | |
| /ivoc/idraw.cpp | |
| ... | |
| 3817 Mod files:INFO:root:Extension common compile flags defaultdict(<cl | |
| ass 'list'>, {'library_dirs': ['/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron | |
| -git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz | |
| 4d4wqvuub75u4ued5xqt/spack-build-ziqyimc/lib'], 'libraries': ['nrn | |
| iv'], 'language': 'c++'}) | |
| 3818 INFO:root:RX3D is DISABLED | |
| 3819 "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mo | |
| d" "./version_macros.mod" | |
| 3820 | |
| 3821 Creating 'x86_64' directory for .o files. | |
| 3822 | |
| >> 3823 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta | |
| ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s | |
| ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu | |
| ptools.installer and fetch_build_eggs are deprecated. | |
| 3824 !! | |
| 3825 | |
| 3826 ********************************************************** | |
| ********************** | |
| 3827 Requirements should be satisfied by a PEP 517 installer. | |
| 3828 If you are using pip, you can try `pip install --use-pep51 | |
| 7`. | |
| 3829 ********************************************************** | |
| ********************** | |
| ... | |
| 3832 dist.fetch_build_eggs(dist.setup_requires) | |
| 3833 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver | |
| sion_macros.o | |
| 3834 WARNING:root:WARNING: The wheel package is not available. | |
| 3835 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ue | |
| d5xqt/spack-build-ziqyimc MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 3836 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4 | |
| wqvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/c448d279dd3b9 | |
| 1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0' | |
| 3837 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 3838 make[3]: xcrun: No such file or directory | |
| 3839 Default NMODL flags: | |
| >> 3840 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 3841 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3842 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3843 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3844 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 3845 [ 42%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/oc | |
| kludge.cpp.o | |
| 3846 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
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| /src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21 | |
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| cproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572c | |
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| u4ued5xqt/spack-build-ziqyimc/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack | |
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| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
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| cihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f | |
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| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J132 | |
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| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/s | |
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| rc/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec9 | |
| 5275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued | |
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| bs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron- | |
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| -ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/scopmath -I/gpfs/b | |
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| se -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/ | |
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| ild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef6 | |
| 1_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/sundials/ | |
| ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449 | |
| /J1322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10 | |
| 698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack | |
| -src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b | |
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| 2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wq | |
| vuub75u4ued5xqt/spack-build-ziqyimc/src/nrniv/oc_generated -I/gpfs | |
| /bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1 | |
| 2.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-buil | |
| d/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_ | |
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| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/ | |
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| rnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
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| p_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neu | |
| ron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl5 | |
| 7pz4d4wqvuub75u4ued5xqt/spack-src/src/nrnpython/../nrnoc -I/gpfs/b | |
| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spa | |
| ck-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da | |
| 1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/nrnp | |
| ython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec9 | |
| 5275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued | |
| 5xqt/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitl | |
| ab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stag | |
| e-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqy | |
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| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13220 | |
| 80/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f508 | |
| 5839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/sr | |
| c/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st | |
| age_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/incl | |
| ude/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f5 | |
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| -frame-pointer --c++17 --diag_suppress=1,47,111,128,170,174,177,1 | |
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| niv.dir/__/oc/ockludge.cpp.o -MF CMakeFiles/nrniv.dir/__/oc/ocklud | |
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| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spa | |
| ck-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da | |
| 1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/src/oc/o | |
| ckludge.cpp | |
| ... | |
| 4504 | |
| 4505 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
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| qt/spack-build-ziqyimc/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/cagk.cpp | |
| 4506 MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon. | |
| o ./green.o ./invlfire.o ./natrans.o ./netmove.o ./noisychan.o ./r | |
| ed.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o ./ | |
| watchrange2.o | |
| 4507 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ue | |
| d5xqt/spack-build-ziqyimc MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4508 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4 | |
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| 860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7' | |
| 4509 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4510 make[3]: xcrun: No such file or directory | |
| 4511 Default NMODL flags: | |
| >> 4512 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4513 [NMODL] [error] :: PROTECT statement is not supported with GPU exe | |
| cution | |
| 4514 [NMODL] [error] :: PROTECT statement is not supported with GPU exe | |
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| 4515 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4516 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4517 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4518 make -f test/api/CMakeFiles/hh_sim_cpp.dir/build.make test/api/CM | |
| akeFiles/hh_sim_cpp.dir/depend | |
| ... | |
| 4648 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
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| obs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron | |
| -git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz | |
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| bs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron- | |
| git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4 | |
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| 0792f8f757b926b965c058a4d6ee876.dir/DependInfo.cmake "--color=" | |
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| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
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| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ue | |
| d5xqt/spack-build-ziqyimc MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4650 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4 | |
| wqvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/a9c54b18e4b54 | |
| 351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff' | |
| 4651 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| 4652 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc' | |
| 4653 make -f test/external/testcorenrn/CMakeFiles/NRN_TEST_nrnivmodl_b | |
| 62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876.di | |
| r/build.make test/external/testcorenrn/CMakeFiles/NRN_TEST_nrnivmo | |
| dl_b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee87 | |
| 6.dir/build | |
| >> 4654 make[3]: xcrun: No such file or directory | |
| 4655 Default NMODL flags: | |
| 4656 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4 | |
| wqvuub75u4ued5xqt/spack-build-ziqyimc' | |
| 4657 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/DGC_M.mod | |
| 4658 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/external/tests/red | |
| uced_dentate//mechanisms/DGC_M.mod /gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neu | |
| ron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl5 | |
| 7pz4d4wqvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/53c432f | |
| 7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mo | |
| d | |
| 4659 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
| 080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50 | |
| 85839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-build | |
| -ziqyimc/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620 | |
| c807381c850fedcdd74295 | |
| 4660 cfiles = | |
| >> 4661 Mod files:diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file o | |
| r directory | |
| 4662 "./halfgap.mod" | |
| 4663 | |
| 4664 Creating 'x86_64' directory for .o files. | |
| 4665 | |
| 4666 [ 45%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33 | |
| 00792f8f757b926b965c058a4d6ee876/vecevent.mod | |
| 4667 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app | |
| s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake- | |
| 3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack | |
| -stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop | |
| -ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/external/tests/testcor | |
| enrn//mod/vecevent.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f57 | |
| 2ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub | |
| 75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/b62f97c7d3f6d905c77 | |
| 4d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod | |
| ... | |
| 4728 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/external/tests/red | |
| uced_dentate//mechanisms/ichan2.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-ne | |
| uron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl | |
| 57pz4d4wqvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/53c432 | |
| f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2. | |
| mod | |
| 4729 [ 46%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod | |
| 4730 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/external/tests/red | |
| uced_dentate//mechanisms/iconc_Ca.mod /gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage- | |
| neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyim | |
| cl57pz4d4wqvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/53c4 | |
| 32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc | |
| _Ca.mod | |
| 4731 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ue | |
| d5xqt/spack-build-ziqyimc MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4732 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4 | |
| wqvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/b62f97c7d3f6d | |
| 905c774d64e10128b3300792f8f757b926b965c058a4d6ee876' | |
| 4733 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4734 make[3]: xcrun: No such file or directory | |
| 4735 Default NMODL flags: | |
| 4736 [ 46%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/kcaPR.mod | |
| 4737 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/external/tests/red | |
| uced_dentate//mechanisms/kcaPR.mod /gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neu | |
| ron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl5 | |
| 7pz4d4wqvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/53c432f | |
| 7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mo | |
| d | |
| >> 4738 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4739 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4740 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4741 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4742 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4743 [ 46%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/na3n.mod | |
| 4744 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/external/tests/red | |
| uced_dentate//mechanisms/na3n.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neur | |
| on-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57 | |
| pz4d4wqvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/53c432f7 | |
| 080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod | |
| ... | |
| 4787 | |
| 4788 Creating 'x86_64' directory for .o files. | |
| 4789 | |
| 4790 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ue | |
| d5xqt/spack-build-ziqyimc INCFLAGS=-I/usr/include LINKFLAGS=/usr/l | |
| ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC | |
| NRN_PRCELLSTATE=0 | |
| 4791 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4 | |
| wqvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/f7f437ac4f0ea | |
| 140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c' | |
| 4792 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4793 make[3]: xcrun: No such file or directory | |
| 4794 Default NMODL flags: | |
| >> 4795 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4796 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4797 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4798 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4799 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4800 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4801 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| ... | |
| 4804 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4805 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 4806 MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o | |
| ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_s | |
| AHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./cc | |
| anl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./ic | |
| onc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent. | |
| o | |
| 4807 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ue | |
| d5xqt/spack-build-ziqyimc MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4808 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4 | |
| wqvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/53c432f7080fe | |
| 7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead' | |
| 4809 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4810 make[3]: xcrun: No such file or directory | |
| 4811 Default NMODL flags: | |
| >> 4812 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4813 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4814 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4815 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4816 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4817 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4818 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| ... | |
| 4969 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/kadist.mod /gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spac | |
| k-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1 | |
| fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-build-ziqyimc | |
| /test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6 | |
| fd47c3be88641a/kadist.mod | |
| 4970 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ue | |
| d5xqt/spack-build-ziqyimc MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4971 [ 48%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/kaprox.mod | |
| 4972 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/kaprox.mod /gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spac | |
| k-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1 | |
| fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-build-ziqyimc | |
| /test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6 | |
| fd47c3be88641a/kaprox.mod | |
| 4973 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4 | |
| wqvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/14c92ceb412f1 | |
| b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab' | |
| 4974 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4975 make[3]: xcrun: No such file or directory | |
| 4976 Default NMODL flags: | |
| >> 4977 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4978 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 4979 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 4980 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 4981 [ 48%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/kca.mod | |
| 4982 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/kca.mod /gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-b | |
| uild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef | |
| 61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-build-ziqyimc/te | |
| st/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd4 | |
| 7c3be88641a/kca.mod | |
| 4983 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| ... | |
| 5039 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuu | |
| b75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/a9c54b18e4b54351cb | |
| 4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64/./special" L | |
| DFLAGS are: | |
| 5040 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
| 080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50 | |
| 85839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-build | |
| -ziqyimc/share/nrn/nrnmain.cpp: | |
| 5041 MODOBJS= ./Ca.o ./CaDynamics_DC0.o ./CaDynamics_E2.o ./Ca_HVA.o ./ | |
| Ca_HVA2.o ./Ca_LVAst.o ./CoreConfig.o ./Ih.o ./Im.o ./K_Pst.o ./K_ | |
| Tst.o ./KdShu2007.o ./NaTa_t.o ./NaTg.o ./NaTs2_t.o ./Nap_Et2.o ./ | |
| ProbAMPANMDA_EMS.o ./ProbGABAAB_EMS.o ./ProfileHelper.o ./SK_E2.o | |
| ./SKv3_1.o ./TTXDynamicsSwitch.o ./VecStim.o ./cacumm.o ./cacummb. | |
| o ./cagk.o ./cal2.o ./can2.o ./cat.o ./gap.o ./h.o ./halfgap.o ./k | |
| adist.o ./kaprox.o ./kca.o ./kd.o ./kd2.o ./kdb.o ./kdrbca1.o ./kd | |
| rca1.o ./km.o ./kmb.o ./na3n.o ./naxn.o ./netstim_inhpoisson.o ./n | |
| ew_calcium_channels.o | |
| 5042 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ue | |
| d5xqt/spack-build-ziqyimc MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 5043 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4 | |
| wqvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/3a24bd33c51ee | |
| 30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a' | |
| 5044 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 5045 make[3]: xcrun: No such file or directory | |
| 5046 Default NMODL flags: | |
| >> 5047 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5048 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion | |
| > definition in NMODL_GLOBAL | |
| 5049 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion | |
| > definition in NMODL_GLOBAL | |
| 5050 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion | |
| > definition in NMODL_GLOBAL | |
| 5051 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 5052 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 5053 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| ... | |
| 5315 [ 49%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_nrntest_fast.json | |
| 5316 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuu | |
| b75u4ued5xqt/spack-src//test/pytest_coreneuron/test_nrntest_fast.j | |
| son /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J | |
| 1322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d1069 | |
| 8f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-b | |
| uild-ziqyimc/test/pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_nrntest_fast.json | |
| 5317 [ 49%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/gui_pycallobject.py | |
| 5318 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuu | |
| b75u4ued5xqt/spack-src//test/pytest_coreneuron/gui_pycallobject.py | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J132 | |
| 2080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5 | |
| 085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-buil | |
| d-ziqyimc/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_co | |
| reneuron/gui_pycallobject.py | |
| 5319 [ 49%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/run_pytest.py | |
| 5320 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuu | |
| b75u4ued5xqt/spack-src//test/pytest_coreneuron/run_pytest.py /gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/s | |
| pack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839 | |
| da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-build-ziqy | |
| imc/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_coreneur | |
| on/run_pytest.py | |
| >> 5321 "banocur.cpp", line 343: error: identifier "_globals" is undefined | |
| 5322 init ( _threadargs_ ) ; | |
| 5323 ^ | |
| 5324 | |
| 5325 1 error detected in the compilation of "banocur.cpp". | |
| >> 5326 make[3]: *** [makemod2c_inc:31: banocur.o] Error 2 | |
| 5327 make[3]: *** Waiting for unfinished jobs.... | |
| >> 5328 "bacur.cpp", line 373: error: identifier "_globals" is undefined | |
| 5329 init ( _threadargs_ ) ; | |
| 5330 ^ | |
| 5331 | |
| 5332 1 error detected in the compilation of "bacur.cpp". | |
| >> 5333 make[3]: *** [makemod2c_inc:23: bacur.o] Error 2 | |
| 5334 [ 49%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_a_neuronoptions.py | |
| 5335 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuu | |
| b75u4ued5xqt/spack-src//test/pytest_coreneuron/test_a_neuronoption | |
| s.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/ | |
| J1322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d106 | |
| 98f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack- | |
| build-ziqyimc/test/pytest_coreneuron/basic_tests_py3.11/test/pytes | |
| t_coreneuron/test_a_neuronoptions.py | |
| 5336 [ 49%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_basic.py | |
| 5337 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuu | |
| b75u4ued5xqt/spack-src//test/pytest_coreneuron/test_basic.py /gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/s | |
| pack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839 | |
| da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-build-ziqy | |
| imc/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_coreneur | |
| on/test_basic.py | |
| >> 5338 "axial.cpp", line 243: error: identifier "_globals" is undefined | |
| 5339 foo ( _threadargs_ ) ; | |
| 5340 ^ | |
| 5341 | |
| 5342 1 error detected in the compilation of "axial.cpp". | |
| >> 5343 make[3]: *** [makemod2c_inc:7: axial.o] Error 2 | |
| >> 5344 "axial_pp.cpp", line 290: error: identifier "_globals" is undefine | |
| d | |
| 5345 foo ( _threadargs_ ) ; | |
| 5346 ^ | |
| 5347 | |
| 5348 1 error detected in the compilation of "axial_pp.cpp". | |
| >> 5349 make[3]: *** [makemod2c_inc:15: axial_pp.o] Error 2 | |
| 5350 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/c35d2f235e0f38 | |
| 60fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/x86_64' | |
| >> 5351 make[2]: *** [test/CMakeFiles/NRN_TEST_nrnivmodl_c35d2f235e0f3860f | |
| becadf05ec8c2b6901bba2525195c69836276a4b5d88ca7.dir/build.make:106 | |
| : test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c698 | |
| 36276a4b5d88ca7/x86_64/special] Error 2 | |
| 5352 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc' | |
| >> 5353 make[1]: *** [CMakeFiles/Makefile2:5929: test/CMakeFiles/NRN_TEST_ | |
| nrnivmodl_c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4 | |
| b5d88ca7.dir/all] Error 2 | |
| 5354 make[1]: *** Waiting for unfinished jobs.... | |
| 5355 [ 49%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_bbss.py | |
| 5356 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuu | |
| b75u4ued5xqt/spack-src//test/pytest_coreneuron/test_bbss.py /gpfs/ | |
| bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/sp | |
| ack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839d | |
| a1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-build-ziqyi | |
| mc/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_coreneuro | |
| n/test_bbss.py | |
| 5357 [ 49%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_coreneuron_configuration.py | |
| 5358 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-bu | |
| ild-ziqyimc/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuu | |
| b75u4ued5xqt/spack-src//test/pytest_coreneuron/test_coreneuron_con | |
| figuration.py /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5x | |
| qt/spack-build-ziqyimc/test/pytest_coreneuron/basic_tests_py3.11/t | |
| est/pytest_coreneuron/test_coreneuron_configuration.py | |
| 5359 [ 49%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_fast_imem.py | |
| ... | |
| 5476 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc/share/nrn/demo/release/x86_64 | |
| ' | |
| 5477 Successfully created x86_64/special | |
| 5478 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc' | |
| 5479 [ 50%] Built target generate-neurondemo-mechanism-library | |
| 5480 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5x | |
| qt/spack-build-ziqyimc/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/vclmp1.cpp | |
| 5481 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5x | |
| qt/spack-build-ziqyimc/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/vlag.cpp | |
| >> 5482 "ampanmda.cpp", line 605: error: identifier "_globals" is undefine | |
| d | |
| 5483 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] ) | |
| ; | |
| 5484 ^ | |
| 5485 | |
| 5486 1 error detected in the compilation of "ampanmda.cpp". | |
| >> 5487 make[3]: *** [makemod2c_inc:23: ampanmda.o] Error 2 | |
| 5488 make[3]: *** Waiting for unfinished jobs.... | |
| 5489 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/14c92ceb412f1b | |
| 4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/x86_64' | |
| >> 5490 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_ | |
| nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068 | |
| 9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd | |
| a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2 | |
| 5491 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc' | |
| >> 5492 make[1]: *** [CMakeFiles/Makefile2:11803: test/external/olfactory- | |
| bulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec | |
| 75b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2 | |
| 5493 => Binary creating x86_64/special-core | |
| 5494 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
| 080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50 | |
| 85839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-build | |
| -ziqyimc/share/coreneuron/coreneuron.cpp: | |
| 5495 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/263a5c542e063e | |
| e6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/x86_64/./libnrn | |
| mech.so" | |
| 5496 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuu | |
| b75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/263a5c542e063ee676 | |
| 0ce51af8be262e1c89db6e16b2211fb308c533e45334f2/x86_64/./special" L | |
| DFLAGS are: | |
| 5497 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp | |
| cihpcproj12/2255391/pgcudafatMSLbYnp5uPni.o: missing .note.GNU-sta | |
| ck section implies executable stack | |
| 5498 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio | |
| ur is deprecated and will be removed in a future version of the li | |
| nker | |
| ... | |
| 5880 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio | |
| ur is deprecated and will be removed in a future version of the li | |
| nker | |
| 5881 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc/test/nrnivmodl/3a24bd33c51ee3 | |
| 0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64' | |
| 5882 Successfully created x86_64/special | |
| 5883 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc' | |
| 5884 [ 50%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1 | |
| 46a37c165552933d5963dc6fd47c3be88641a | |
| 5885 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4w | |
| qvuub75u4ued5xqt/spack-build-ziqyimc' | |
| >> 5886 make: *** [Makefile:169: all] Error 2 | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322080/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ziqyimcl57pz4d4wqvuub75u4ued5xqt/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r1i7n30: task 0: Exited with exit code 1 | |
| section_end:1718648697:step_script [0Ksection_start:1718648697:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=10799 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1322080 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=10842 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1322080 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=10885 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1322080 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1718648699:upload_artifacts_on_failure [0Ksection_start:1718648699:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1718648700:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1718645794:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1718645794:resolve_secrets [0Ksection_start:1718645794:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1544174616, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 217449, build ref , job ID 1322082 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1322082_PROD_P2160_CP4_C7 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2255393 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322082_PROD_P2160_CP4_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449 --ntasks=2 --jobid=2255393 --cpus-per-task=8 --mem=160G | |
| section_end:1718645795:prepare_executor [0Ksection_start:1718645795:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i4n31 via bbpv1.epfl.ch... | |
| section_end:1718645799:prepare_script [0Ksection_start:1718645799:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1718645800:get_sources [0Ksection_start:1718645800:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=55406 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1718645816:restore_cache [0Ksection_start:1718645816:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1322077)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=55629 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1322077 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1718645817:download_artifacts [0Ksection_start:1718645817:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449/J1322082_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2255393/ccache | |
| Config file: /nvme/bbpcihpcproj12/2255393/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Mon Jun 17 19:37:12 2024 | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (90.55%) | |
| Files: 10962 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| - ^caliper+cuda cuda_arch=70 | |
| Concretized | |
| -------------------------------- | |
| - ny2azzh neuron@git.2f572ccaec95275624d10698f5085839da1fef61=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| - vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake | |
| [^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake | |
| [^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] 53hy2ex ^nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e | |
| ==> Installing caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 [54/55] | |
| ==> No binary for caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 found: installing from source | |
| ==> Fetching https://github.com/LLNL/Caliper/archive/v2.11.0.tar.gz | |
| ==> No patches needed for caliper | |
| ==> caliper: Executing phase: 'cmake' | |
| ==> caliper: Executing phase: 'build' | |
| ==> caliper: Executing phase: 'install' | |
| ==> caliper: Successfully installed caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 | |
| Stage: 2.74s. Cmake: 18.69s. Build: 12.51s. Install: 1.08s. Post-install: 0.18s. Total: 35.55s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi | |
| ==> Installing neuron-git.2f572ccaec95275624d10698f5085839da1fef61=develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y [55/55] | |
| ==> No binary for neuron-git.2f572ccaec95275624d10698f5085839da1fef61=develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 2: | |
| 'make' '-j8' | |
| 34 errors found in build log: | |
| 2878 [ 29%] Running nrnivmodl-core with internal mod files | |
| 2879 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-bu | |
| ild-ny2azzh/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage | |
| _externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak | |
| e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572cc | |
| aec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarb | |
| hfwpy33y/spack-build-ny2azzh/bin/nrnivmodl-core -b STATIC -m /gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/i | |
| nstall_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46 | |
| 770aa12665_develop-53hy2e/bin/nmodl -n internal -p 4 . | |
| 2880 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron | |
| -git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex | |
| 4ntgoxi2aarbhfwpy33y/spack-build-ny2azzh/bin', compiling default o | |
| nes only! | |
| 2881 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfw | |
| py33y/spack-build-ny2azzh MECHLIB_SUFFIX=internal NMODL_BINARY=/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software | |
| /install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d | |
| 46770aa12665_develop-53hy2e/bin/nmodl MODS_PATH=x86_64/corenrn/mod | |
| 2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0 | |
| 2882 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4nt | |
| goxi2aarbhfwpy33y/spack-build-ny2azzh/bin' | |
| 2883 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 2884 make[3]: xcrun: No such file or directory | |
| 2885 Default NMODL flags: | |
| >> 2886 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 2887 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2888 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2889 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 2890 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 2891 "../../../spack-src/external/eigen/Eigen/src/Core/arch/AVX/PacketM | |
| ath.h", line 984: warning: integer conversion resulted in a change | |
| of sign [integer_sign_change] | |
| 2892 const __m128i sign_mask = _mm_set1_epi16(static_cast<numext::u | |
| int16_t>(0x8000)); | |
| ... | |
| 3821 INFO:root:RX3D is DISABLED | |
| 3822 "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod" | |
| 3823 | |
| 3824 Creating 'x86_64' directory for .o files. | |
| 3825 | |
| 3826 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver | |
| sion_macros.o | |
| >> 3827 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta | |
| ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s | |
| ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu | |
| ptools.installer and fetch_build_eggs are deprecated. | |
| 3828 !! | |
| 3829 | |
| 3830 ********************************************************** | |
| ********************** | |
| 3831 Requirements should be satisfied by a PEP 517 installer. | |
| 3832 If you are using pip, you can try `pip install --use-pep51 | |
| 7`. | |
| 3833 ********************************************************** | |
| ********************** | |
| ... | |
| 3835 !! | |
| 3836 dist.fetch_build_eggs(dist.setup_requires) | |
| 3837 WARNING:root:WARNING: The wheel package is not available. | |
| 3838 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfw | |
| py33y/spack-build-ny2azzh MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 3839 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4nt | |
| goxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/c448d279dd3b9 | |
| 1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0' | |
| 3840 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 3841 make[3]: xcrun: No such file or directory | |
| 3842 Default NMODL flags: | |
| >> 3843 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 3844 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3845 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3846 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3847 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 3848 [ 42%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/oc | |
| kludge.cpp.o | |
| 3849 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-bu | |
| ild-ny2azzh/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217449/J1322075/spack/lib/spack/env/nvhpc/nvc++ -DCOR | |
| ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN | |
| D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS | |
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| 860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7' | |
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| 5624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33 | |
| y/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr | |
| oj12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccae | |
| c95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhf | |
| wpy33y/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b | |
| bpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git. | |
| 2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgo | |
| xi2aarbhfwpy33y/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage | |
| -neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2az | |
| zhbbvex4ntgoxi2aarbhfwpy33y/spack-src/src/nrnpython -I/gpfs/bbp.cs | |
| cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-bu | |
| ild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef6 | |
| 1_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/src/parallel | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13 | |
| 22082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f | |
| 5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-src | |
| /src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec9 | |
| 5275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwp | |
| y33y/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-st | |
| age-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny | |
| 2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/src/sundials -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack- | |
| build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fe | |
| f61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/src/sundial | |
| s/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2 | |
| 17449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec952756 | |
| 24d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/ | |
| spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4nt | |
| goxi2aarbhfwpy33y/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/ | |
| spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_de | |
| velop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-build-ny2azzh/src/nrn | |
| iv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ | |
| externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/i | |
| nclude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217 | |
| 449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624 | |
| d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/sp | |
| ack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp | |
| roj12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572cca | |
| ec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbh | |
| fwpy33y/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_ | |
| map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-n | |
| euron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzh | |
| bbvex4ntgoxi2aarbhfwpy33y/spack-src/src/nrnpython/../oc -I/gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spac | |
| k-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1 | |
| fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/src/nrnpy | |
| thon/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec9 | |
| 5275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwp | |
| y33y/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage | |
| -neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2az | |
| zhbbvex4ntgoxi2aarbhfwpy33y/spack-src/src/nrnpython/../nrniv -I/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082 | |
| /spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50858 | |
| 39da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/src/ | |
| nrnpython/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572 | |
| ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aa | |
| rbhfwpy33y/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/py | |
| thon-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/s | |
| sd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_gcc-12. | |
| 3.0-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/external/eigen - | |
| tp haswell -g -O1 -fno-omit-frame-pointer --c++17 --diag_suppress | |
| =1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror -MD | |
| -MT test/api/CMakeFiles/vclamp_cpp.dir/vclamp.cpp.o -MF CMakeFiles | |
| /vclamp_cpp.dir/vclamp.cpp.o.d -o CMakeFiles/vclamp_cpp.dir/vclamp | |
| .cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21 | |
| 7449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec9527562 | |
| 4d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/s | |
| pack-src/test/api/vclamp.cpp | |
| >> 4562 make[3]: xcrun: No such file or directory | |
| 4563 Default NMODL flags: | |
| 4564 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
| 075/spack/lib/spack/env/nvhpc/nvc++ -tp haswell -g -O1 -fno-omit-f | |
| rame-pointer -noswitcherror -rdynamic CMakeFiles/sections_c.dir/s | |
| ections.c.o -o ../../bin/test/sections_c -L/gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hp | |
| e-mpi-2.27.p1.hmpt-6rr256/lib -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-st | |
| age-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny | |
| 2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-build-ny2azzh/lib:/gpfs/bbp.c | |
| scs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0- | |
| skylake/python-3.11.6-bj4i6m/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/20 | |
| 24-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8. | |
| 2-pdugg7/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_appli | |
| cations/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib:/gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/inst | |
| all_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/lib64:/gpfs/bbp.cscs. | |
| ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-s | |
| kylake/adiak-0.4.0-hficqq/lib:/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024- | |
| 02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.h | |
| mpt-6rr256/lib -ldl ../../lib/libnrniv.so ../../lib/libnrngnu.a .. | |
| /../lib/libsparse13.a /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/st | |
| age_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/lib/ | |
| libpython3.11.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_a | |
| pplications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7/lib/lib | |
| readline.so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applic | |
| ations/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib/libcurses | |
| .so /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/i | |
| nstall_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv/lib/libform.so /gpfs/ | |
| bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/in | |
| stall_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/lib64/libcaliper.so | |
| .2.11.0 -lpthread -lpthread -ldl -lmpi -lnvcpumath -Wl,-rpath-link | |
| ,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst | |
| all_gcc-12.3.0-skylake/adiak-0.4.0-hficqq/lib | |
| >> 4565 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4566 [NMODL] [error] :: PROTECT statement is not supported with GPU exe | |
| cution | |
| 4567 [NMODL] [error] :: PROTECT statement is not supported with GPU exe | |
| cution | |
| 4568 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4569 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4570 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4571 [ 45%] Linking CXX executable ../../bin/test/vclamp_cpp | |
| ... | |
| 4624 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-bu | |
| ild-ny2azzh/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/external/tests/red | |
| uced_dentate//mechanisms/DGC_M.mod /gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neu | |
| ron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbb | |
| vex4ntgoxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/53c432f | |
| 7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mo | |
| d | |
| 4625 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfw | |
| py33y/spack-build-ny2azzh MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4626 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4nt | |
| goxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/a9c54b18e4b54 | |
| 351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff' | |
| 4627 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| 4628 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/DGC_UK.mod | |
| 4629 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-bu | |
| ild-ny2azzh/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/external/tests/red | |
| uced_dentate//mechanisms/DGC_UK.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-ne | |
| uron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhb | |
| bvex4ntgoxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/53c432 | |
| f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK. | |
| mod | |
| >> 4630 make[3]: xcrun: No such file or directory | |
| 4631 Default NMODL flags: | |
| >> 4632 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4633 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod | |
| 4634 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-bu | |
| ild-ny2azzh/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/external/tests/red | |
| uced_dentate//mechanisms/DGC_sAHP.mod /gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage- | |
| neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azz | |
| hbbvex4ntgoxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/53c4 | |
| 32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_s | |
| AHP.mod | |
| 4635 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4636 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4637 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 4638 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| ... | |
| 4719 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2 | |
| aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/5b499c48b620b3f996 | |
| 279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/x86_64/./special" L | |
| DFLAGS are: | |
| 4720 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
| 082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50 | |
| 85839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-build | |
| -ny2azzh/share/nrn/nrnmain.cpp: | |
| 4721 MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o | |
| ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_s | |
| AHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./cc | |
| anl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./ic | |
| onc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent. | |
| o | |
| 4722 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfw | |
| py33y/spack-build-ny2azzh MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4723 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4nt | |
| goxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/53c432f7080fe | |
| 7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead' | |
| 4724 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4725 make[3]: xcrun: No such file or directory | |
| 4726 Default NMODL flags: | |
| >> 4727 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4728 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4729 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4730 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4731 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4732 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4733 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| ... | |
| 4796 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4nt | |
| goxi2aarbhfwpy33y/spack-build-ny2azzh' | |
| 4797 [ 47%] Generating ../../nrnivmodl/f7f437ac4f0ea140e809f1bdd7f7d032 | |
| 01e354b9a2041597f8faaf7fb7aebb7c/invlfirestats.mod | |
| 4798 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-bu | |
| ild-ny2azzh/test/external/tqperf && /gpfs/bbp.cscs.ch/ssd/apps/bsd | |
| /2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27. | |
| 7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitl | |
| ab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-stag | |
| e-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2a | |
| zzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/external/tests/tqperf//modx | |
| /invlfirestats.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp | |
| roj12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572cca | |
| ec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbh | |
| fwpy33y/spack-build-ny2azzh/test/nrnivmodl/f7f437ac4f0ea140e809f1b | |
| dd7f7d03201e354b9a2041597f8faaf7fb7aebb7c/invlfirestats.mod | |
| 4799 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfw | |
| py33y/spack-build-ny2azzh MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4800 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4nt | |
| goxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/b62f97c7d3f6d | |
| 905c774d64e10128b3300792f8f757b926b965c058a4d6ee876' | |
| 4801 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4802 make[3]: xcrun: No such file or directory | |
| 4803 Default NMODL flags: | |
| 4804 [ 47%] Generating ../../nrnivmodl/f7f437ac4f0ea140e809f1bdd7f7d032 | |
| 01e354b9a2041597f8faaf7fb7aebb7c/invlfire.mod | |
| 4805 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-bu | |
| ild-ny2azzh/test/external/tqperf && /gpfs/bbp.cscs.ch/ssd/apps/bsd | |
| /2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27. | |
| 7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitl | |
| ab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-stag | |
| e-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2a | |
| zzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/external/tests/tqperf//mod/ | |
| invlfire.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/ | |
| P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec9527 | |
| 5624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33 | |
| y/spack-build-ny2azzh/test/nrnivmodl/f7f437ac4f0ea140e809f1bdd7f7d | |
| 03201e354b9a2041597f8faaf7fb7aebb7c/invlfire.mod | |
| >> 4806 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4807 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4808 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4809 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4810 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4811 [ 47%] Generating ../../nrnivmodl/f7f437ac4f0ea140e809f1bdd7f7d032 | |
| 01e354b9a2041597f8faaf7fb7aebb7c/invlfiresha.mod | |
| 4812 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-bu | |
| ild-ny2azzh/test/external/tqperf && /gpfs/bbp.cscs.ch/ssd/apps/bsd | |
| /2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27. | |
| 7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitl | |
| ab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-stag | |
| e-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2a | |
| zzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/external/tests/tqperf//modx | |
| /invlfiresha.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfw | |
| py33y/spack-build-ny2azzh/test/nrnivmodl/f7f437ac4f0ea140e809f1bdd | |
| 7f7d03201e354b9a2041597f8faaf7fb7aebb7c/invlfiresha.mod | |
| ... | |
| 4825 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/bbd7c82eee28b9 | |
| 31214a8172bb776ba66c406a6620c807381c850fedcdd74295/x86_64/./libnrn | |
| mech.so" | |
| 4826 MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o | |
| 4827 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2 | |
| aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/bbd7c82eee28b93121 | |
| 4a8172bb776ba66c406a6620c807381c850fedcdd74295/x86_64/./special" L | |
| DFLAGS are: | |
| 4828 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfw | |
| py33y/spack-build-ny2azzh INCFLAGS=-I/usr/include LINKFLAGS=/usr/l | |
| ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC | |
| NRN_PRCELLSTATE=0 | |
| 4829 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4nt | |
| goxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/f7f437ac4f0ea | |
| 140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c' | |
| 4830 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4831 make[3]: xcrun: No such file or directory | |
| 4832 Default NMODL flags: | |
| >> 4833 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4834 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4835 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4836 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4837 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4838 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4839 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| ... | |
| 4978 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-bu | |
| ild-ny2azzh/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/kca.mod /gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-b | |
| uild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef | |
| 61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-build-ny2azzh/te | |
| st/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd4 | |
| 7c3be88641a/kca.mod | |
| 4979 [ 48%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/kd.mod | |
| 4980 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-bu | |
| ild-ny2azzh/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/kd.mod /gpfs/bbp.cs | |
| cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-bu | |
| ild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef6 | |
| 1_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-build-ny2azzh/tes | |
| t/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47 | |
| c3be88641a/kd.mod | |
| 4981 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfw | |
| py33y/spack-build-ny2azzh MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4982 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4nt | |
| goxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/14c92ceb412f1 | |
| b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab' | |
| 4983 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4984 make[3]: xcrun: No such file or directory | |
| 4985 Default NMODL flags: | |
| 4986 [ 48%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/kd2.mod | |
| 4987 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-bu | |
| ild-ny2azzh/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/kd2.mod /gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-b | |
| uild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef | |
| 61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-build-ny2azzh/te | |
| st/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd4 | |
| 7c3be88641a/kd2.mod | |
| >> 4988 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4989 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 4990 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 4991 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 4992 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 4993 [NMODL] [warning] :: SYMTAB :: w [Argument] in NetReceiveBlock sha | |
| dows <assigned_definition> definition in NMODL_GLOBAL | |
| 4994 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| ... | |
| 5042 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/a9c54b18e4b543 | |
| 51cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64/./libnrn | |
| mech.so" | |
| 5043 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2 | |
| aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/a9c54b18e4b54351cb | |
| 4fd3e79067cafa02da4514b4383a54de8ff121657615ff/x86_64/./special" L | |
| DFLAGS are: | |
| 5044 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
| 082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50 | |
| 85839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-build | |
| -ny2azzh/share/nrn/nrnmain.cpp: | |
| 5045 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfw | |
| py33y/spack-build-ny2azzh MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 5046 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4nt | |
| goxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/3a24bd33c51ee | |
| 30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a' | |
| 5047 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 5048 make[3]: xcrun: No such file or directory | |
| 5049 Default NMODL flags: | |
| >> 5050 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5051 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion | |
| > definition in NMODL_GLOBAL | |
| 5052 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion | |
| > definition in NMODL_GLOBAL | |
| 5053 [NMODL] [warning] :: SYMTAB :: ca [Argument] in rates shadows <ion | |
| > definition in NMODL_GLOBAL | |
| 5054 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 5055 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 5056 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| ... | |
| 5289 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy3 | |
| 3y/spack-build-ny2azzh/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/syn1.cpp | |
| 5290 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy3 | |
| 3y/spack-build-ny2azzh/share/nrn/demo/release/x86_64/release.cpp | |
| 5291 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy3 | |
| 3y/spack-build-ny2azzh/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/synpre.cpp | |
| 5292 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy3 | |
| 3y/spack-build-ny2azzh/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/trivial.cpp | |
| 5293 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy3 | |
| 3y/spack-build-ny2azzh/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/tstdarray.cpp | |
| 5294 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy3 | |
| 3y/spack-build-ny2azzh/test/nrnivmodl/b62f97c7d3f6d905c774d64e1012 | |
| 8b3300792f8f757b926b965c058a4d6ee876/x86_64/vecevent.cpp | |
| >> 5295 "banocur.cpp", line 343: error: identifier "_globals" is undefined | |
| 5296 init ( _threadargs_ ) ; | |
| 5297 ^ | |
| 5298 | |
| 5299 1 error detected in the compilation of "banocur.cpp". | |
| >> 5300 make[3]: *** [makemod2c_inc:31: banocur.o] Error 2 | |
| 5301 make[3]: *** Waiting for unfinished jobs.... | |
| 5302 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp | |
| cihpcproj12/2255393/pgcudafat_13v6pU0SVQC.o: missing .note.GNU-sta | |
| ck section implies executable stack | |
| 5303 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio | |
| ur is deprecated and will be removed in a future version of the li | |
| nker | |
| 5304 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/f7f437ac4f0ea1 | |
| 40e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c/x86_64' | |
| 5305 Successfully created x86_64/special | |
| >> 5306 "bacur.cpp", line 373: error: identifier "_globals" is undefined | |
| 5307 init ( _threadargs_ ) ; | |
| 5308 ^ | |
| 5309 | |
| 5310 1 error detected in the compilation of "bacur.cpp". | |
| >> 5311 make[3]: *** [makemod2c_inc:23: bacur.o] Error 2 | |
| 5312 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh' | |
| >> 5313 "axial.cpp", line 243: error: identifier "_globals" is undefined | |
| 5314 foo ( _threadargs_ ) ; | |
| 5315 ^ | |
| 5316 | |
| 5317 1 error detected in the compilation of "axial.cpp". | |
| >> 5318 make[3]: *** [makemod2c_inc:7: axial.o] Error 2 | |
| 5319 [ 49%] Built target NRN_TEST_nrnivmodl_f7f437ac4f0ea140e809f1bdd7f | |
| 7d03201e354b9a2041597f8faaf7fb7aebb7c | |
| 5320 make -f test/CMakeFiles/copy-scripts-pytest-basic_tests_py3.11.di | |
| r/build.make test/CMakeFiles/copy-scripts-pytest-basic_tests_py3.1 | |
| 1.dir/depend | |
| 5321 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4nt | |
| goxi2aarbhfwpy33y/spack-build-ny2azzh' | |
| 5322 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-bu | |
| ild-ny2azzh && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext | |
| ernals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmake -E | |
| cmake_depends "Unix Makefiles" /gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron | |
| -git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex | |
| 4ntgoxi2aarbhfwpy33y/spack-src /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron- | |
| git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4 | |
| ntgoxi2aarbhfwpy33y/spack-src/test /gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neu | |
| ron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbb | |
| vex4ntgoxi2aarbhfwpy33y/spack-build-ny2azzh /gpfs/bbp.cscs.ch/ssd/ | |
| gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/spack- | |
| stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop- | |
| ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-build-ny2azzh/test /gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spac | |
| k-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1 | |
| fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-build-ny2azzh | |
| /test/CMakeFiles/copy-scripts-pytest-basic_tests_py3.11.dir/Depend | |
| Info.cmake "--color=" | |
| 5323 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh' | |
| 5324 make -f test/CMakeFiles/copy-scripts-pytest-basic_tests_py3.11.di | |
| r/build.make test/CMakeFiles/copy-scripts-pytest-basic_tests_py3.1 | |
| 1.dir/build | |
| >> 5325 "axial_pp.cpp", line 290: error: identifier "_globals" is undefine | |
| d | |
| 5326 foo ( _threadargs_ ) ; | |
| 5327 ^ | |
| 5328 | |
| 5329 1 error detected in the compilation of "axial_pp.cpp". | |
| >> 5330 make[3]: *** [makemod2c_inc:15: axial_pp.o] Error 2 | |
| 5331 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/c35d2f235e0f38 | |
| 60fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/x86_64' | |
| >> 5332 make[2]: *** [test/CMakeFiles/NRN_TEST_nrnivmodl_c35d2f235e0f3860f | |
| becadf05ec8c2b6901bba2525195c69836276a4b5d88ca7.dir/build.make:106 | |
| : test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c698 | |
| 36276a4b5d88ca7/x86_64/special] Error 2 | |
| 5333 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh' | |
| >> 5334 make[1]: *** [CMakeFiles/Makefile2:5929: test/CMakeFiles/NRN_TEST_ | |
| nrnivmodl_c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4 | |
| b5d88ca7.dir/all] Error 2 | |
| 5335 make[1]: *** Waiting for unfinished jobs.... | |
| 5336 make[2]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4nt | |
| goxi2aarbhfwpy33y/spack-build-ny2azzh' | |
| 5337 [ 49%] Generating pytest/basic_tests_py3.11/test/pytest/test_nrnte | |
| st_thread.json | |
| 5338 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-bu | |
| ild-ny2azzh/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2 | |
| aarbhfwpy33y/spack-src//test/pytest/test_nrntest_thread.json /gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/s | |
| pack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839 | |
| da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-build-ny2a | |
| zzh/test/pytest/basic_tests_py3.11/test/pytest/test_nrntest_thread | |
| .json | |
| 5339 [ 49%] Generating pytest/basic_tests_py3.11/test/pytest/test_nrnte | |
| st_thread.py | |
| 5340 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-bu | |
| ild-ny2azzh/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2 | |
| aarbhfwpy33y/spack-src//test/pytest/test_nrntest_thread.py /gpfs/b | |
| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spa | |
| ck-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da | |
| 1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-build-ny2azz | |
| h/test/pytest/basic_tests_py3.11/test/pytest/test_nrntest_thread.p | |
| y | |
| ... | |
| 5419 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh' | |
| 5420 [ 49%] Built target NRN_TEST_nrnivmodl_b62f97c7d3f6d905c774d64e101 | |
| 28b3300792f8f757b926b965c058a4d6ee876 | |
| 5421 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy3 | |
| 3y/spack-build-ny2azzh/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/vclmp1.cpp | |
| 5422 => Binary creating x86_64/special-core | |
| 5423 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy3 | |
| 3y/spack-build-ny2azzh/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/vlag.cpp | |
| 5424 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
| 082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50 | |
| 85839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-build | |
| -ny2azzh/share/coreneuron/coreneuron.cpp: | |
| >> 5425 "ampanmda.cpp", line 605: error: identifier "_globals" is undefine | |
| d | |
| 5426 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] ) | |
| ; | |
| 5427 ^ | |
| 5428 | |
| 5429 1 error detected in the compilation of "ampanmda.cpp". | |
| >> 5430 make[3]: *** [makemod2c_inc:23: ampanmda.o] Error 2 | |
| 5431 make[3]: *** Waiting for unfinished jobs.... | |
| 5432 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/14c92ceb412f1b | |
| 4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/x86_64' | |
| >> 5433 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_ | |
| nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068 | |
| 9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd | |
| a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2 | |
| 5434 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh' | |
| >> 5435 make[1]: *** [CMakeFiles/Makefile2:11803: test/external/olfactory- | |
| bulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec | |
| 75b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2 | |
| 5436 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: warning: /nvme/bbp | |
| cihpcproj12/2255393/pgcudafat-wrw9hiK1xOR.o: missing .note.GNU-sta | |
| ck section implies executable stack | |
| 5437 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio | |
| ur is deprecated and will be removed in a future version of the li | |
| nker | |
| 5438 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/53c432f7080fe7 | |
| b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead' | |
| 5439 [INFO] MOD files built successfully for CoreNEURON | |
| 5440 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4nt | |
| goxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/53c432f7080fe | |
| 7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/x86_64' | |
| 5441 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| ... | |
| 5821 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio | |
| ur is deprecated and will be removed in a future version of the li | |
| nker | |
| 5822 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh/test/nrnivmodl/3a24bd33c51ee3 | |
| 0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64' | |
| 5823 Successfully created x86_64/special | |
| 5824 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh' | |
| 5825 [ 49%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1 | |
| 46a37c165552933d5963dc6fd47c3be88641a | |
| 5826 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntg | |
| oxi2aarbhfwpy33y/spack-build-ny2azzh' | |
| >> 5827 make: *** [Makefile:169: all] Error 2 | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322082/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-ny2azzhbbvex4ntgoxi2aarbhfwpy33y/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r1i4n31: task 0: Exited with exit code 1 | |
| section_end:1718648996:step_script [0Ksection_start:1718648996:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=95159 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1322082 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=95214 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1322082 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=95306 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1322082 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1718648998:upload_artifacts_on_failure [0Ksection_start:1718648998:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1718649000:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1718645794:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1718645794:resolve_secrets [0Ksection_start:1718645794:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor767331345, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 217449, build ref , job ID 1322083 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1322083_PROD_P2160_CP5_C8 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2255394 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322083_PROD_P2160_CP5_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449 --ntasks=2 --jobid=2255394 --cpus-per-task=8 --mem=160G | |
| section_end:1718645796:prepare_executor [0Ksection_start:1718645796:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i4n31 via bbpv1.epfl.ch... | |
| section_end:1718645800:prepare_script [0Ksection_start:1718645800:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1718645801:get_sources [0Ksection_start:1718645801:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=55497 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1718645817:restore_cache [0Ksection_start:1718645817:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1322077)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=55934 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1322077 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1718645818:download_artifacts [0Ksection_start:1718645818:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449/J1322083_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2255394/ccache | |
| Config file: /nvme/bbpcihpcproj12/2255394/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Mon Jun 17 19:37:10 2024 | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (90.02%) | |
| Files: 10494 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| - ^caliper+cuda cuda_arch=70 | |
| Concretized | |
| -------------------------------- | |
| - nd2gzug neuron@git.2f572ccaec95275624d10698f5085839da1fef61=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| - vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake | |
| [^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake | |
| [^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] 53hy2ex ^nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| ==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g [40/55] | |
| ==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g found: installing from source | |
| ==> No patches needed for libsonata-report | |
| ==> libsonata-report: Executing phase: 'cmake' | |
| ==> libsonata-report: Executing phase: 'build' | |
| ==> libsonata-report: Executing phase: 'install' | |
| ==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g | |
| Stage: 1.15s. Cmake: 9.45s. Build: 4.42s. Install: 0.10s. Post-install: 0.18s. Total: 15.47s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp | |
| ==> Installing neuron-git.2f572ccaec95275624d10698f5085839da1fef61=develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait [55/55] | |
| ==> No binary for neuron-git.2f572ccaec95275624d10698f5085839da1fef61=develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 2: | |
| 'make' '-j8' | |
| 34 errors found in build log: | |
| 3036 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i | |
| voc/hocmark.cpp.o | |
| 3037 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217449/J1322075/spack/lib/spack/env/nvhpc/nvc++ -DCOR | |
| ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN | |
| D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS | |
| -DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO | |
| RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-st | |
| age-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd | |
| 2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/ivoc -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-buil | |
| d/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_ | |
| develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/nrncvode -I | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
| 083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50 | |
| 85839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/s | |
| rc/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2 | |
| 17449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec952756 | |
| 24d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/ | |
| spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572 | |
| ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx | |
| 3wj5ijyait/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-g | |
| it.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgy | |
| o3mvilnx3wj5ijyait/spack-build-nd2gzug -I/gpfs/bbp.cscs.ch/ssd/git | |
| lab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-sta | |
| ge-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2 | |
| gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/src/nrncvode -I/ | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13220 | |
| 83/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f508 | |
| 5839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build- | |
| nd2gzug/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572cc | |
| aec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3w | |
| j5ijyait/spack-build-nd2gzug/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack | |
| -stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop | |
| -nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/src/oc -I/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083 | |
| /spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50858 | |
| 39da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd | |
| 2gzug/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp | |
| cproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572c | |
| caec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3 | |
| wj5ijyait/spack-build-nd2gzug/src/sundials -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack | |
| -stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop | |
| -nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/src/sundials | |
| /shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21 | |
| 7449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec9527562 | |
| 4d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/s | |
| pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec95 | |
| 275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijy | |
| ait/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvil | |
| nx3wj5ijyait/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-ne | |
| uron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugx | |
| vnwpgyo3mvilnx3wj5ijyait/spack-src/src/nrnpython -I/gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/parallel -I/ | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13220 | |
| 83/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f508 | |
| 5839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/sr | |
| c/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/ | |
| P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec9527 | |
| 5624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyai | |
| t/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f | |
| 572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvi | |
| lnx3wj5ijyait/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage | |
| -neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gz | |
| ugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/sundials -I/gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-bui | |
| ld/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61 | |
| _develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/sundials/c | |
| vodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174 | |
| 49/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d | |
| 10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spa | |
| ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb | |
| pcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2 | |
| f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mv | |
| ilnx3wj5ijyait/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/s | |
| sd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spa | |
| ck-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_devel | |
| op-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/src/nrniv/ | |
| oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext | |
| ernals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/incl | |
| ude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449 | |
| /J1322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10 | |
| 698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack | |
| -src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec9 | |
| 5275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ij | |
| yait/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neur | |
| on-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvn | |
| wpgyo3mvilnx3wj5ijyait/spack-src/src/nrnpython/../oc -I/gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-b | |
| uild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef | |
| 61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/nrnpytho | |
| n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/ | |
| P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec9527 | |
| 5624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyai | |
| t/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-ne | |
| uron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugx | |
| vnwpgyo3mvilnx3wj5ijyait/spack-src/src/nrnpython/../nrniv -I/gpfs/ | |
| bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/sp | |
| ack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839d | |
| a1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/nrn | |
| python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp | |
| roj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572cca | |
| ec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj | |
| 5ijyait/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap | |
| ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho | |
| n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/ | |
| gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_gcc-12.3.0 | |
| -skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/ | |
| ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/sp | |
| ack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_deve | |
| lop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/eigen -tp | |
| haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr | |
| ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror - | |
| MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/hocmark.cpp.o -M | |
| F CMakeFiles/nrniv_lib.dir/__/ivoc/hocmark.cpp.o.d -o CMakeFiles/n | |
| rniv_lib.dir/__/ivoc/hocmark.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage- | |
| neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzu | |
| gxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/ivoc/hocmark.cpp | |
| 3038 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron | |
| -git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwp | |
| gyo3mvilnx3wj5ijyait/spack-build-nd2gzug/bin', compiling default o | |
| nes only! | |
| 3039 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5i | |
| jyait/spack-build-nd2gzug MECHLIB_SUFFIX=internal NMODL_BINARY=/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software | |
| /install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d | |
| 46770aa12665_develop-53hy2e/bin/nmodl MODS_PATH=x86_64/corenrn/mod | |
| 2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0 | |
| 3040 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo | |
| 3mvilnx3wj5ijyait/spack-build-nd2gzug/bin' | |
| 3041 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 3042 make[3]: xcrun: No such file or directory | |
| 3043 Default NMODL flags: | |
| >> 3044 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 3045 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3046 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3047 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3048 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 3049 [ 30%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/i | |
| voc/htlist.cpp.o | |
| 3050 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217449/J1322075/spack/lib/spack/env/nvhpc/nvc++ -DCOR | |
| ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN | |
| D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS | |
| -DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO | |
| RTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gi | |
| tlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-st | |
| age-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd | |
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| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-buil | |
| d/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_ | |
| develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/nrncvode -I | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322 | |
| 083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50 | |
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| pcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572 | |
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| s/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-g | |
| it.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgy | |
| o3mvilnx3wj5ijyait/spack-build-nd2gzug -I/gpfs/bbp.cscs.ch/ssd/git | |
| lab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-sta | |
| ge-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2 | |
| gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/src/nrncvode -I/ | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13220 | |
| 83/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f508 | |
| 5839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build- | |
| nd2gzug/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572cc | |
| aec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3w | |
| j5ijyait/spack-build-nd2gzug/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack | |
| -stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop | |
| -nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/src/oc -I/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083 | |
| /spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50858 | |
| 39da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd | |
| 2gzug/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp | |
| cproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572c | |
| caec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3 | |
| wj5ijyait/spack-build-nd2gzug/src/sundials -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack | |
| -stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop | |
| -nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/src/sundials | |
| /shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21 | |
| 7449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec9527562 | |
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| pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec95 | |
| 275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijy | |
| ait/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvil | |
| nx3wj5ijyait/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-ne | |
| uron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugx | |
| vnwpgyo3mvilnx3wj5ijyait/spack-src/src/nrnpython -I/gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/parallel -I/ | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13220 | |
| 83/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f508 | |
| 5839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/sr | |
| c/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/ | |
| P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec9527 | |
| 5624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyai | |
| t/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f | |
| 572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvi | |
| lnx3wj5ijyait/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage | |
| -neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gz | |
| ugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/sundials -I/gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-bui | |
| ld/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61 | |
| _develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/sundials/c | |
| vodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2174 | |
| 49/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d | |
| 10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spa | |
| ck-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb | |
| pcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2 | |
| f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mv | |
| ilnx3wj5ijyait/spack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/s | |
| sd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spa | |
| ck-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_devel | |
| op-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/src/nrniv/ | |
| oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_ext | |
| ernals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/incl | |
| ude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449 | |
| /J1322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10 | |
| 698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack | |
| -src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec9 | |
| 5275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ij | |
| yait/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neur | |
| on-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvn | |
| wpgyo3mvilnx3wj5ijyait/spack-src/src/nrnpython/../oc -I/gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-b | |
| uild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef | |
| 61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/nrnpytho | |
| n/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/ | |
| P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec9527 | |
| 5624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyai | |
| t/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-ne | |
| uron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugx | |
| vnwpgyo3mvilnx3wj5ijyait/spack-src/src/nrnpython/../nrniv -I/gpfs/ | |
| bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/sp | |
| ack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839d | |
| a1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/nrn | |
| python/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp | |
| roj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572cca | |
| ec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj | |
| 5ijyait/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/ap | |
| ps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/pytho | |
| n-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/ | |
| gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_gcc-12.3.0 | |
| -skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/ | |
| ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/sp | |
| ack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_deve | |
| lop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/eigen -tp | |
| haswell -g -O1 -fno-omit-frame-pointer --c++17 -fPIC --diag_suppr | |
| ess=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherror - | |
| MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o -MF | |
| CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o.d -o CMakeFiles/nrn | |
| iv_lib.dir/__/ivoc/htlist.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neu | |
| ron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxv | |
| nwpgyo3mvilnx3wj5ijyait/spack-src/src/ivoc/htlist.cpp | |
| ... | |
| 3820 Mod files:INFO:root:Extension common compile flags defaultdict(<cl | |
| ass 'list'>, {'library_dirs': ['/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron | |
| -git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwp | |
| gyo3mvilnx3wj5ijyait/spack-build-nd2gzug/lib'], 'libraries': ['nrn | |
| iv'], 'language': 'c++'}) | |
| 3821 INFO:root:RX3D is DISABLED | |
| 3822 "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mo | |
| d" "./version_macros.mod" | |
| 3823 | |
| 3824 Creating 'x86_64' directory for .o files. | |
| 3825 | |
| >> 3826 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta | |
| ll_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx/lib/python3.11/s | |
| ite-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setu | |
| ptools.installer and fetch_build_eggs are deprecated. | |
| 3827 !! | |
| 3828 | |
| 3829 ********************************************************** | |
| ********************** | |
| 3830 Requirements should be satisfied by a PEP 517 installer. | |
| 3831 If you are using pip, you can try `pip install --use-pep51 | |
| 7`. | |
| 3832 ********************************************************** | |
| ********************** | |
| ... | |
| 3835 dist.fetch_build_eggs(dist.setup_requires) | |
| 3836 WARNING:root:WARNING: The wheel package is not available. | |
| 3837 MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./ver | |
| sion_macros.o | |
| 3838 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5i | |
| jyait/spack-build-nd2gzug MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 3839 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo | |
| 3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/c448d279dd3b9 | |
| 1940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0' | |
| 3840 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 3841 make[3]: xcrun: No such file or directory | |
| 3842 Default NMODL flags: | |
| >> 3843 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 3844 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3845 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3846 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 3847 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit | |
| h cnexp solver | |
| 3848 [ 42%] Building CXX object src/nrniv/CMakeFiles/nrniv.dir/__/oc/oc | |
| kludge.cpp.o | |
| 3849 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217449/J1322075/spack/lib/spack/env/nvhpc/nvc++ -DCOR | |
| ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN | |
| D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS | |
| -DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-buil | |
| d/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_ | |
| develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/ivoc -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/ | |
| spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f508583 | |
| 9da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/n | |
| rncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21 | |
| 7449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec9527562 | |
| 4d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/s | |
| pack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp | |
| cproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572c | |
| caec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3 | |
| wj5ijyait/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron | |
| -git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwp | |
| gyo3mvilnx3wj5ijyait/spack-src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitl | |
| ab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stag | |
| e-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2g | |
| zugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug -I/gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/src/nr | |
| ncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217 | |
| 449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624 | |
| d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/sp | |
| ack-build-nd2gzug/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job | |
| s/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-g | |
| it.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgy | |
| o3mvilnx3wj5ijyait/spack-build-nd2gzug/src/nrnpython -I/gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-b | |
| uild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef | |
| 61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/sr | |
| c/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21744 | |
| 9/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d1 | |
| 0698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spac | |
| k-build-nd2gzug/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron- | |
| git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpg | |
| yo3mvilnx3wj5ijyait/spack-build-nd2gzug/src/sundials -I/gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-b | |
| uild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef | |
| 61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/sr | |
| c/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572cc | |
| aec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3w | |
| j5ijyait/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp | |
| cihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f | |
| 572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvi | |
| lnx3wj5ijyait/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neur | |
| on-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvn | |
| wpgyo3mvilnx3wj5ijyait/spack-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spac | |
| k-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develo | |
| p-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/nrnpython -I/gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/s | |
| pack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839 | |
| da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/pa | |
| rallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217 | |
| 449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624 | |
| d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/sp | |
| ack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f57 | |
| 2ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mviln | |
| x3wj5ijyait/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neu | |
| ron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxv | |
| nwpgyo3mvilnx3wj5ijyait/spack-src/src/sparse13 -I/gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/sundials -I/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083 | |
| /spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f50858 | |
| 39da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/ | |
| sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr | |
| oj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccae | |
| c95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5 | |
| ijyait/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-ne | |
| uron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugx | |
| vnwpgyo3mvilnx3wj5ijyait/spack-src/src/sundials/shared -I/gpfs/bbp | |
| .cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack | |
| -build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1f | |
| ef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/ | |
| src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01 | |
| /stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6 | |
| rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj | |
| 12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec9 | |
| 5275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ij | |
| yait/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb | |
| pcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2 | |
| f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mv | |
| ilnx3wj5ijyait/spack-src/src/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/ | |
| gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack- | |
| stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop- | |
| nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/nrnpython/../oc -I/ | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13220 | |
| 83/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f508 | |
| 5839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/sr | |
| c/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f57 | |
| 2ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mviln | |
| x3wj5ijyait/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spac | |
| k-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develo | |
| p-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/src/nrnpython/../nrni | |
| v -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J | |
| 1322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d1069 | |
| 8f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-s | |
| rc/src/nrnpython/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo | |
| 3mvilnx3wj5ijyait/spack-src/src/nrnpython/../ivos -I/gpfs/bbp.cscs | |
| .ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-sky | |
| lake/python-3.11.6-bj4i6m/include/python3.11 -isystem /gpfs/bbp.cs | |
| cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_ | |
| gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp/include -isystem /gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spac | |
| k-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1 | |
| fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/ | |
| eigen -tp haswell -g -O1 -fno-omit-frame-pointer --c++17 --diag_s | |
| uppress=1,47,111,128,170,174,177,186,541,550,816,2465 -noswitcherr | |
| or -MD -MT src/nrniv/CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o -MF | |
| CMakeFiles/nrniv.dir/__/oc/ockludge.cpp.o.d -o CMakeFiles/nrniv.d | |
| ir/__/oc/ockludge.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b | |
| bpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git. | |
| 2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3m | |
| vilnx3wj5ijyait/spack-src/src/oc/ockludge.cpp | |
| ... | |
| 4523 Thread Safe | |
| 4524 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijya | |
| it/spack-build-nd2gzug/test/nrnivmodl/c448d279dd3b91940d228c42e4a7 | |
| c280bafe100b4e840f9c938be979cceb8fe0/x86_64/unitstest.cpp | |
| 4525 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijya | |
| it/spack-build-nd2gzug/test/nrnivmodl/c448d279dd3b91940d228c42e4a7 | |
| c280bafe100b4e840f9c938be979cceb8fe0/x86_64/version_macros.cpp | |
| 4526 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5i | |
| jyait/spack-build-nd2gzug MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4527 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo | |
| 3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/c35d2f235e0f3 | |
| 860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7' | |
| 4528 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4529 make[3]: xcrun: No such file or directory | |
| 4530 Default NMODL flags: | |
| >> 4531 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4532 [NMODL] [error] :: PROTECT statement is not supported with GPU exe | |
| cution | |
| 4533 [NMODL] [error] :: PROTECT statement is not supported with GPU exe | |
| cution | |
| 4534 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4535 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4536 [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows < | |
| argument> definition in NetReceiveBlock | |
| 4537 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| ... | |
| 4676 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app | |
| s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake- | |
| 3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack | |
| -stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop | |
| -nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/tests/testcor | |
| enrn//mod/vecevent.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f57 | |
| 2ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mviln | |
| x3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/b62f97c7d3f6d905c77 | |
| 4d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod | |
| 4677 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/DGC_UK.mod | |
| 4678 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/tests/red | |
| uced_dentate//mechanisms/DGC_UK.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-ne | |
| uron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugx | |
| vnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/53c432 | |
| f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK. | |
| mod | |
| 4679 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5i | |
| jyait/spack-build-nd2gzug MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4680 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo | |
| 3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/a9c54b18e4b54 | |
| 351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff' | |
| 4681 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4682 make[3]: xcrun: No such file or directory | |
| 4683 Default NMODL flags: | |
| 4684 [ 45%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33 | |
| 00792f8f757b926b965c058a4d6ee876/Gfluct3.mod | |
| 4685 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app | |
| s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake- | |
| 3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack | |
| -stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop | |
| -nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/tests/testcor | |
| enrn//mod/Gfluct3.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572 | |
| ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx | |
| 3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/b62f97c7d3f6d905c774 | |
| d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod | |
| >> 4686 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4687 [ 45%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod | |
| 4688 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/tests/red | |
| uced_dentate//mechanisms/DGC_sAHP.mod /gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage- | |
| neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzu | |
| gxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/53c4 | |
| 32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_s | |
| AHP.mod | |
| 4689 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijya | |
| it/spack-build-nd2gzug/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/fh.cpp | |
| 4690 [ 46%] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b33 | |
| 00792f8f757b926b965c058a4d6ee876/hhderiv.mod | |
| 4691 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/external/testcorenrn && /gpfs/bbp.cscs.ch/ssd/app | |
| s/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake- | |
| 3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack | |
| -stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop | |
| -nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/tests/testcor | |
| enrn//mod/hhderiv.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572 | |
| ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx | |
| 3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/b62f97c7d3f6d905c774 | |
| d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod | |
| 4692 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| ... | |
| 4759 [ 46%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod | |
| 4760 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/tests/red | |
| uced_dentate//mechanisms/iconc_Ca.mod /gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage- | |
| neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzu | |
| gxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/53c4 | |
| 32f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc | |
| _Ca.mod | |
| 4761 MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o | |
| 4762 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5i | |
| jyait/spack-build-nd2gzug MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4763 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo | |
| 3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/b62f97c7d3f6d | |
| 905c774d64e10128b3300792f8f757b926b965c058a4d6ee876' | |
| 4764 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4765 make[3]: xcrun: No such file or directory | |
| 4766 Default NMODL flags: | |
| 4767 [ 46%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/kcaPR.mod | |
| 4768 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/tests/red | |
| uced_dentate//mechanisms/kcaPR.mod /gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neu | |
| ron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxv | |
| nwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/53c432f | |
| 7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mo | |
| d | |
| >> 4769 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4770 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4771 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4772 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4773 [NMODL] [warning] :: Can not inline function call to mynormrand | |
| 4774 [ 46%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/na3n.mod | |
| 4775 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/tests/red | |
| uced_dentate//mechanisms/na3n.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neur | |
| on-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvn | |
| wpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/53c432f7 | |
| 080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod | |
| ... | |
| 4777 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/tests/red | |
| uced_dentate//mechanisms/nca.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuro | |
| n-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnw | |
| pgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/53c432f70 | |
| 80fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod | |
| 4778 [ 47%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/spines.mod | |
| 4779 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/tests/red | |
| uced_dentate//mechanisms/spines.mod /gpfs/bbp.cscs.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-ne | |
| uron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugx | |
| vnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/53c432 | |
| f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines. | |
| mod | |
| 4780 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5i | |
| jyait/spack-build-nd2gzug INCFLAGS=-I/usr/include LINKFLAGS=/usr/l | |
| ib64/libcrypto.so MODS_PATH=x86_64/corenrn/mod2c BUILD_TYPE=STATIC | |
| NRN_PRCELLSTATE=0 | |
| 4781 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo | |
| 3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/f7f437ac4f0ea | |
| 140e809f1bdd7f7d03201e354b9a2041597f8faaf7fb7aebb7c' | |
| 4782 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4783 make[3]: xcrun: No such file or directory | |
| 4784 Default NMODL flags: | |
| >> 4785 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4786 [ 47%] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96 | |
| d387425d200c645a6b4cec93b5edfead/tca.mod | |
| 4787 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/external/reduced_dentate && /gpfs/bbp.cscs.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cm | |
| ake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs.ch | |
| /ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/s | |
| pack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_dev | |
| elop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/tests/red | |
| uced_dentate//mechanisms/tca.mod /gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuro | |
| n-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnw | |
| pgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/53c432f70 | |
| 80fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod | |
| 4788 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4789 [NMODL] [warning] :: Can not inline function call to specify_invl | |
| 4790 [ 47%] Building special[-core] for test group reduced_dentate | |
| 4791 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425 | |
| d200c645a6b4cec93b5edfead && cmake -E env NEURONHOME=/gpfs/bbp\.cs | |
| cs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-b | |
| uild/spack-stage-neuron-git\.2f572ccaec95275624d10698f5085839da1fe | |
| f61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/s | |
| hare/nrn NRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcp | |
| roj12/P217449/J1322083/spack-build/spack-stage-neuron-git\.2f572cc | |
| aec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3w | |
| j5ijyait/spack-build-nd2gzug PATH=/gpfs/bbp\.cscs\.ch/ssd/gitlab_m | |
| ap_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-ne | |
| uron-git\.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzug | |
| xvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/bin:/gpfs/bbp\.cscs\ | |
| .ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\. | |
| 0-skylake/readline-8\.2-pdugg7/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs | |
| d/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-co | |
| verage-7\.2\.6-wuxetk/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02 | |
| -01/stage_applications/install_gcc-12\.3\.0-skylake/py-pytest-7\.3 | |
| \.2-lrf2u3/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_a | |
| pplications/install_gcc-12\.3\.0-skylake/py-pip-23\.1\.2-77ku3v/bi | |
| n:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/i | |
| nstall_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1-elr5pn/bin:/gpfs/bbp | |
| \.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/ins | |
| tall_gcc-12\.3\.0-skylake/nmodl-git\.5ff221d045c92389b4cab5ee159d4 | |
| 6770aa12665_develop-53hy2e/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20 | |
| 24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-sympy- | |
| 1\.11\.1-t5tove/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st | |
| age_applications/install_gcc-12\.3\.0-skylake/py-pybind11-2\.11\.1 | |
| -tabj2m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_appl | |
| ications/install_gcc-12\.3\.0-skylake/py-find-libpython-0\.3\.1-5d | |
| ylnc/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2 | |
| 17449/software/install_nvhpc-23\.1-skylake/libsonata-report-git\.5 | |
| 602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi/bin:/gpfs/b | |
| bp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/i | |
| nstall_gcc-12\.3\.0-skylake/caliper-2\.11\.0-vjj3tp/bin:/gpfs/bbp\ | |
| .cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-1 | |
| 2\.3\.0-skylake/gettext-0\.22\.3-nbi5w5/bin:/gpfs/bbp\.cscs\.ch/ss | |
| d/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skyl | |
| ake/pigz-2\.7-dwjcgu/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02- | |
| 01/stage_applications/install_gcc-12\.3\.0-skylake/ncurses-6\.4-6k | |
| dbhv/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applica | |
| tions/install_gcc-12\.3\.0-skylake/pkgconf-1\.9\.5-e533uu/bin:/gpf | |
| s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install | |
| _gcc-12\.3\.0-skylake/gmake-4\.4\.1-swjylu/bin:/gpfs/bbp\.cscs\.ch | |
| /ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-s | |
| kylake/zstd-1\.5\.5-aivjoo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20 | |
| 24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/xz-5\.4\. | |
| 1-wwn5en/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_app | |
| lications/install_gcc-12\.3\.0-skylake/bzip2-1\.0\.8-vdqwmg/bin:/g | |
| pfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12\.3\.0-skylake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.c | |
| h/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-sky | |
| lake/python-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2 | |
| 024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/intel-oneap | |
| i-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/intel64:/gpfs/bbp\.cscs | |
| \.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0- | |
| skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/bin:/gpfs/bbp\.cscs\.ch/ssd | |
| /apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/ | |
| ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02 | |
| -01/stage_externals/install_gcc-12\.3\.0-skylake/flex-2\.6\.3-edx4 | |
| lf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals | |
| /install_gcc-12\.3\.0-skylake/cuda-12\.0\.0-ucajzb/bin:/gpfs/bbp\. | |
| cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3 | |
| \.0-skylake/cmake-3\.27\.7-slyoes/bin:/gpfs/bbp\.cscs\.ch/ssd/apps | |
| /bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/bison | |
| -3\.8\.2-qcx3sg/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P217449/J1322075/spack/lib/spack/env/nvhpc:/gpfs/bbp\.csc | |
| s\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/li | |
| b/spack/env/case-insensitive:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P217449/J1322075/spack/lib/spack/env:/gpfs/bbp\. | |
| cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3 | |
| \.0-skylake/intel-oneapi-mkl-2023\.2\.0-twl2n4/mkl/2023\.2\.0/bin/ | |
| intel64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_external | |
| s/install_gcc-12\.3\.0-skylake/ninja-1\.11\.1-nxtlgo/bin:/gpfs/bbp | |
| \.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\ | |
| .3\.0-skylake/flex-2\.6\.3-edx4lf/bin:/gpfs/bbp\.cscs\.ch/ssd/apps | |
| /bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/pytho | |
| n-3\.11\.6-bj4i6m/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/ | |
| stage_externals/install_gcc-12\.3\.0-skylake/cuda-12\.0\.0-ucajzb/ | |
| bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/in | |
| stall_gcc-12\.3\.0-skylake/hpe-mpi-2\.27\.p1\.hmpt-6rr256/bin:/gpf | |
| s/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gc | |
| c-12\.3\.0-skylake/cmake-3\.27\.7-slyoes/bin:/gpfs/bbp\.cscs\.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylak | |
| e/m4-1\.4\.19-wtcpud/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02- | |
| 01/stage_externals/install_gcc-12\.3\.0-skylake/bison-3\.8\.2-qcx3 | |
| sg/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals | |
| /install_gcc-12\.3\.0-skylake/binutils-2\.41-vvcm5q/bin:/gpfs/bbp\ | |
| .cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\. | |
| 3\.0-skylake/nvhpc-23\.1-vficpy/Linux_x86_64/23\.1/compilers/bin:/ | |
| gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/boot | |
| strap/store/linux-centos7-x86_64/gcc-10\.2\.1/patchelf-0\.18\.0-af | |
| v7arjarb7nzmlh7c5slkfxykybuqce/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bs | |
| d/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/ccache-4 | |
| \.7\.4-eompz5/bin:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P217449/J1322075/spack/bin:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd | |
| /2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/git-2\.42 | |
| \.0-sie4gc/bin:/opt/clmgr/sbin:/opt/clmgr/bin:/opt/sgi/sbin:/opt/s | |
| gi/bin:/usr/lib64/qt-3\.3/bin:/usr/lib64/ccache:/usr/local/bin:/bi | |
| n:/usr/bin:/usr/local/sbin:/usr/sbin:/gpfs/bbp\.cscs\.ch/ssd/apps/ | |
| bb5/systemtools:/opt/c3/bin:/opt/ddn/ime/bin:/opt/puppetlabs/bin:/ | |
| sbin:/bin:/gpfs/bbp\.cscs\.ch/home/bbpcihpcproj12/\.local/bin:/gpf | |
| s/bbp\.cscs\.ch/home/bbpcihpcproj12/bin LD_LIBRARY_PATH=/gpfs/bbp\ | |
| .cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spac | |
| k-build/spack-stage-neuron-git\.2f572ccaec95275624d10698f5085839da | |
| 1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzu | |
| g/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_externals/ | |
| install_gcc-12\.3\.0-skylake/intel-oneapi-mkl-2023\.2\.0-twl2n4/mk | |
| l/2023\.2\.0/lib/intel64:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02- | |
| 01/stage_externals/install_gcc-12\.3\.0-skylake/intel-oneapi-mkl-2 | |
| 023\.2\.0-twl2n4/mkl/2023\.2\.0/lib/intel64:/gpfs/bbp\.cscs\.ch/ss | |
| d/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake | |
| /hpe-mpi-2\.27\.p1\.hmpt-6rr256/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/b | |
| sd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/nvhpc-2 | |
| 3\.1-vficpy/Linux_x86_64/23\.1/compilers/lib:/gpfs/bbp\.cscs\.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylak | |
| e/cuda-12\.0\.0-ucajzb/extras/CUPTI/lib64:/gpfs/bbp\.cscs\.ch/ssd/ | |
| apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/h | |
| pe-mpi-2\.27\.p1\.hmpt-6rr256/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd | |
| /2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/hdf5-1 | |
| \.14\.3-5o77ye/lib CORENRNHOME=/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuro | |
| n-git\.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvn | |
| wpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug PYTHONPATH=/gpfs/bbp\.c | |
| scs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack- | |
| build/spack-stage-neuron-git\.2f572ccaec95275624d10698f5085839da1f | |
| ef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/ | |
| lib/python:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/ | |
| P217449/J1322083/spack-build/spack-stage-neuron-git\.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijya | |
| it/spack-src/test/rxd:/gpfs/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/software/install_gcc-12\.3\.0-skylake/nmodl-git | |
| \.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e/lib:/gpf | |
| s/bbp\.cscs\.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/softwar | |
| e/install_gcc-12\.3\.0-skylake/nmodl-git\.5ff221d045c92389b4cab5ee | |
| 159d46770aa12665_develop-53hy2e/lib:/gpfs/bbp\.cscs\.ch/ssd/apps/b | |
| sd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-p | |
| ytest-cov-4\.0\.0-z5nf6n/lib/python3\.11/site-packages:/gpfs/bbp\. | |
| cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12 | |
| \.3\.0-skylake/py-coverage-7\.2\.6-wuxetk/lib/python3\.11/site-pac | |
| kages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicatio | |
| ns/install_gcc-12\.3\.0-skylake/py-pytest-7\.3\.2-lrf2u3/lib/pytho | |
| n3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/s | |
| tage_applications/install_gcc-12\.3\.0-skylake/py-iniconfig-2\.0\. | |
| 0-mvxx6g/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/app | |
| s/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/p | |
| y-pluggy-1\.0\.0-6su7kv/lib/python3\.11/site-packages:/gpfs/bbp\.c | |
| scs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\ | |
| .3\.0-skylake/py-numpy-1\.26\.1-elr5pn/lib/python3\.11/site-packag | |
| es:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/ | |
| install_gcc-12\.3\.0-skylake/py-mpi4py-3\.1\.4-x733hw/lib/python3\ | |
| .11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_applications/install_gcc-12\.3\.0-skylake/py-sympy-1\.11\.1-t5to | |
| ve/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/ | |
| 2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-mpma | |
| th-1\.2\.1-4fflyi/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.c | |
| h/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0- | |
| skylake/py-packaging-23\.1-uqml2t/lib/python3\.11/site-packages:/g | |
| pfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/insta | |
| ll_gcc-12\.3\.0-skylake/py-pyyaml-5\.4\.1-2inh3r/lib/python3\.11/s | |
| ite-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_app | |
| lications/install_gcc-12\.3\.0-skylake/py-pybind11-2\.11\.1-tabj2m | |
| /lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/20 | |
| 24-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-jinja2 | |
| -3\.1\.2-7valid/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ | |
| ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-sk | |
| ylake/py-markupsafe-2\.1\.3-r3ehtm/lib/python3\.11/site-packages:/ | |
| gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/inst | |
| all_gcc-12\.3\.0-skylake/py-find-libpython-0\.3\.1-5dylnc/lib/pyth | |
| on3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/ | |
| stage_applications/install_gcc-12\.3\.0-skylake/py-setuptools-68\. | |
| 0\.0-p3xbqx/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/ | |
| apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylak | |
| e/py-pip-23\.1\.2-77ku3v/lib/python3\.11/site-packages:/gpfs/bbp\. | |
| cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12 | |
| \.3\.0-skylake/py-pytest-7\.3\.2-lrf2u3/lib/python3\.11/site-packa | |
| ges:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications | |
| /install_gcc-12\.3\.0-skylake/py-sympy-1\.11\.1-t5tove/lib/python3 | |
| \.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/sta | |
| ge_applications/install_gcc-12\.3\.0-skylake/py-coverage-7\.2\.6-w | |
| uxetk/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/b | |
| sd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py-m | |
| pi4py-3\.1\.4-x733hw/lib/python3\.11/site-packages:/gpfs/bbp\.cscs | |
| \.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\.3\ | |
| .0-skylake/py-mpmath-1\.2\.1-4fflyi/lib/python3\.11/site-packages: | |
| /gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/ins | |
| tall_gcc-12\.3\.0-skylake/py-setuptools-68\.0\.0-p3xbqx/lib/python | |
| 3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/st | |
| age_applications/install_gcc-12\.3\.0-skylake/py-iniconfig-2\.0\.0 | |
| -mvxx6g/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps | |
| /bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py | |
| -packaging-23\.1-uqml2t/lib/python3\.11/site-packages:/gpfs/bbp\.c | |
| scs\.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12\ | |
| .3\.0-skylake/py-pytest-cov-4\.0\.0-z5nf6n/lib/python3\.11/site-pa | |
| ckages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/stage_applicati | |
| ons/install_gcc-12\.3\.0-skylake/py-pluggy-1\.0\.0-6su7kv/lib/pyth | |
| on3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd/2024-02-01/ | |
| stage_applications/install_gcc-12\.3\.0-skylake/py-numpy-1\.26\.1- | |
| elr5pn/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\.ch/ssd/apps/ | |
| bsd/2024-02-01/stage_applications/install_gcc-12\.3\.0-skylake/py- | |
| pip-23\.1\.2-77ku3v/lib/python3\.11/site-packages:/gpfs/bbp\.cscs\ | |
| .ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12\.3\.0-s | |
| kylake/ninja-1\.11\.1-nxtlgo/misc:/gpfs/bbp\.cscs\.ch/ssd/apps/bsd | |
| /2024-02-01/stage_externals/install_gcc-12\.3\.0-skylake/ninja-1\. | |
| 11\.1-nxtlgo/misc /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr | |
| oj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccae | |
| c95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5 | |
| ijyait/spack-build-nd2gzug/bin/nrnivmodl -coreneuron . | |
| ... | |
| 4837 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/CoreConfig.mod /gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/ | |
| spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f508583 | |
| 9da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2 | |
| gzug/test/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d596 | |
| 3dc6fd47c3be88641a/CoreConfig.mod | |
| 4838 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/Ih.mod | |
| 4839 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/Ih.mod /gpfs/bbp.cs | |
| cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-bu | |
| ild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef6 | |
| 1_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/tes | |
| t/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47 | |
| c3be88641a/Ih.mod | |
| 4840 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5i | |
| jyait/spack-build-nd2gzug MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 4841 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo | |
| 3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/53c432f7080fe | |
| 7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead' | |
| 4842 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 4843 make[3]: xcrun: No such file or directory | |
| 4844 Default NMODL flags: | |
| >> 4845 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 4846 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4847 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4848 [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> | |
| definition in NMODL_GLOBAL | |
| 4849 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/Im.mod | |
| 4850 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test/external/channel-benchmark && /gpfs/bbp.cscs.ch/s | |
| sd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ | |
| cmake-3.27.7-slyoes/bin/cmake -E copy_if_different /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build | |
| /spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_d | |
| evelop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-src/external/tests/c | |
| hannel-benchmark/benchmark/channels/lib/modlib/Im.mod /gpfs/bbp.cs | |
| cs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-bu | |
| ild/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef6 | |
| 1_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2gzug/tes | |
| t/nrnivmodl/3a24bd33c51ee30c68f71d610b146a37c165552933d5963dc6fd47 | |
| c3be88641a/Im.mod | |
| 4851 [ 47%] Generating ../../nrnivmodl/3a24bd33c51ee30c68f71d610b146a37 | |
| c165552933d5963dc6fd47c3be88641a/K_Pst.mod | |
| ... | |
| 5003 | |
| 5004 MODOBJS= ./Gfluct.o ./ThreshDetect.o ./ampanmda.o ./distrt.o ./fi. | |
| o ./fi_stdp.o ./gap.o ./kamt.o ./kdrmt.o ./ks.o ./naxn.o ./orn.o . | |
| /ostimhelper.o | |
| 5005 MODOBJS= ./Ca.o ./CaDynamics_DC0.o ./CaDynamics_E2.o ./Ca_HVA.o ./ | |
| Ca_HVA2.o ./Ca_LVAst.o ./CoreConfig.o ./Ih.o ./Im.o ./K_Pst.o ./K_ | |
| Tst.o ./KdShu2007.o ./NaTa_t.o ./NaTg.o ./NaTs2_t.o ./Nap_Et2.o ./ | |
| ProbAMPANMDA_EMS.o ./ProbGABAAB_EMS.o ./ProfileHelper.o ./SK_E2.o | |
| ./SKv3_1.o ./TTXDynamicsSwitch.o ./VecStim.o ./cacumm.o ./cacummb. | |
| o ./cagk.o ./cal2.o ./can2.o ./cat.o ./gap.o ./h.o ./halfgap.o ./k | |
| adist.o ./kaprox.o ./kca.o ./kd.o ./kd2.o ./kdb.o ./kdrbca1.o ./kd | |
| rca1.o ./km.o ./kmb.o ./na3n.o ./naxn.o ./netstim_inhpoisson.o ./n | |
| ew_calcium_channels.o | |
| 5006 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5i | |
| jyait/spack-build-nd2gzug MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 5007 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo | |
| 3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/14c92ceb412f1 | |
| b4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab' | |
| 5008 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 5009 make[3]: xcrun: No such file or directory | |
| 5010 Default NMODL flags: | |
| >> 5011 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5012 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5013 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5014 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5015 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5016 [NMODL] [warning] :: SYMTAB :: w [Argument] in NetReceiveBlock sha | |
| dows <assigned_definition> definition in NMODL_GLOBAL | |
| 5017 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| ... | |
| 5019 [NMODL] [warning] :: SYMTAB :: step [Argument] in plast shadows <e | |
| xtern_method> definition in NMODL_GLOBAL | |
| 5020 [NMODL] [warning] :: SYMTAB :: w [Argument] in NetReceiveBlock sha | |
| dows <assigned_definition> definition in NMODL_GLOBAL | |
| 5021 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijya | |
| it/spack-build-nd2gzug/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/inatest.cpp | |
| 5022 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/share/coreneuron/nrnivmodl_co | |
| re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec | |
| 95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5i | |
| jyait/spack-build-nd2gzug MODS_PATH=x86_64/corenrn/mod2c BUILD_TYP | |
| E=STATIC NRN_PRCELLSTATE=0 | |
| 5023 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs | |
| /bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-gi | |
| t.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo | |
| 3mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/3a24bd33c51ee | |
| 30c68f71d610b146a37c165552933d5963dc6fd47c3be88641a' | |
| 5024 make[3]: warning: -j4 forced in submake: resetting jobserver mode. | |
| >> 5025 make[3]: xcrun: No such file or directory | |
| 5026 Default NMODL flags: | |
| >> 5027 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 5028 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijya | |
| it/spack-build-nd2gzug/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/ionleak.cpp | |
| 5029 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijya | |
| it/spack-build-nd2gzug/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/nacum.cpp | |
| 5030 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijya | |
| it/spack-build-nd2gzug/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/nacur.cpp | |
| 5031 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 5032 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| 5033 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado | |
| ws <extern_neuron_var> definition in NMODL_GLOBAL | |
| ... | |
| 5348 [ 50%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_nlayer.py | |
| 5349 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvil | |
| nx3wj5ijyait/spack-src//test/pytest_coreneuron/test_nlayer.py /gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/ | |
| spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f508583 | |
| 9da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2 | |
| gzug/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_coreneu | |
| ron/test_nlayer.py | |
| 5350 [ 50%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_nrnste.py | |
| 5351 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvil | |
| nx3wj5ijyait/spack-src//test/pytest_coreneuron/test_nrnste.py /gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/ | |
| spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f508583 | |
| 9da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2 | |
| gzug/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_coreneu | |
| ron/test_nrnste.py | |
| 5352 [ 50%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_nrntest_fast.py | |
| 5353 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvil | |
| nx3wj5ijyait/spack-src//test/pytest_coreneuron/test_nrntest_fast.p | |
| y /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13 | |
| 22083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f | |
| 5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bui | |
| ld-nd2gzug/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_c | |
| oreneuron/test_nrntest_fast.py | |
| >> 5354 "banocur.cpp", line 343: error: identifier "_globals" is undefined | |
| 5355 init ( _threadargs_ ) ; | |
| 5356 ^ | |
| 5357 | |
| 5358 1 error detected in the compilation of "banocur.cpp". | |
| >> 5359 make[3]: *** [makemod2c_inc:31: banocur.o] Error 2 | |
| 5360 make[3]: *** Waiting for unfinished jobs.... | |
| >> 5361 "bacur.cpp", line 373: error: identifier "_globals" is undefined | |
| 5362 init ( _threadargs_ ) ; | |
| 5363 ^ | |
| 5364 | |
| 5365 1 error detected in the compilation of "bacur.cpp". | |
| >> 5366 make[3]: *** [makemod2c_inc:23: bacur.o] Error 2 | |
| 5367 [ 50%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_partrans.py | |
| 5368 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvil | |
| nx3wj5ijyait/spack-src//test/pytest_coreneuron/test_partrans.py /g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J132208 | |
| 3/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085 | |
| 839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-n | |
| d2gzug/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_coren | |
| euron/test_partrans.py | |
| 5369 [ 50%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_py2nrnstring.py | |
| 5370 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvil | |
| nx3wj5ijyait/spack-src//test/pytest_coreneuron/test_py2nrnstring.p | |
| y /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13 | |
| 22083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f | |
| 5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bui | |
| ld-nd2gzug/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_c | |
| oreneuron/test_py2nrnstring.py | |
| >> 5371 "axial.cpp", line 243: error: identifier "_globals" is undefined | |
| 5372 foo ( _threadargs_ ) ; | |
| 5373 ^ | |
| 5374 | |
| 5375 1 error detected in the compilation of "axial.cpp". | |
| >> 5376 make[3]: *** [makemod2c_inc:7: axial.o] Error 2 | |
| >> 5377 "axial_pp.cpp", line 290: error: identifier "_globals" is undefine | |
| d | |
| 5378 foo ( _threadargs_ ) ; | |
| 5379 ^ | |
| 5380 | |
| 5381 1 error detected in the compilation of "axial_pp.cpp". | |
| >> 5382 make[3]: *** [makemod2c_inc:15: axial_pp.o] Error 2 | |
| 5383 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/c35d2f235e0f38 | |
| 60fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/x86_64' | |
| >> 5384 make[2]: *** [test/CMakeFiles/NRN_TEST_nrnivmodl_c35d2f235e0f3860f | |
| becadf05ec8c2b6901bba2525195c69836276a4b5d88ca7.dir/build.make:106 | |
| : test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c698 | |
| 36276a4b5d88ca7/x86_64/special] Error 2 | |
| 5385 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug' | |
| >> 5386 make[1]: *** [CMakeFiles/Makefile2:5929: test/CMakeFiles/NRN_TEST_ | |
| nrnivmodl_c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4 | |
| b5d88ca7.dir/all] Error 2 | |
| 5387 make[1]: *** Waiting for unfinished jobs.... | |
| 5388 [ 50%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_pycallobject.py | |
| 5389 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvil | |
| nx3wj5ijyait/spack-src//test/pytest_coreneuron/test_pycallobject.p | |
| y /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J13 | |
| 22083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f | |
| 5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bui | |
| ld-nd2gzug/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_c | |
| oreneuron/test_pycallobject.py | |
| 5390 [ 50%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_pyobj.py | |
| 5391 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1 | |
| 322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698 | |
| f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-bu | |
| ild-nd2gzug/test && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stag | |
| e_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cma | |
| ke -E copy_if_different /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvil | |
| nx3wj5ijyait/spack-src//test/pytest_coreneuron/test_pyobj.py /gpfs | |
| /bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/s | |
| pack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839 | |
| da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-nd2g | |
| zug/test/pytest_coreneuron/basic_tests_py3.11/test/pytest_coreneur | |
| on/test_pyobj.py | |
| 5392 [ 50%] Generating pytest_coreneuron/basic_tests_py3.11/test/pytest | |
| _coreneuron/test_swc.py | |
| ... | |
| 5479 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/share/nrn/demo/release/x86_64 | |
| ' | |
| 5480 Successfully created x86_64/special | |
| 5481 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug' | |
| 5482 [ 50%] Built target generate-neurondemo-mechanism-library | |
| 5483 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijya | |
| it/spack-build-nd2gzug/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/vclmp1.cpp | |
| 5484 -> Compiling /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec952 | |
| 75624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijya | |
| it/spack-build-nd2gzug/test/nrnivmodl/263a5c542e063ee6760ce51af8be | |
| 262e1c89db6e16b2211fb308c533e45334f2/x86_64/vlag.cpp | |
| >> 5485 "ampanmda.cpp", line 605: error: identifier "_globals" is undefine | |
| d | |
| 5486 _args[2] = _args[0] * plast ( _threadargscomma_ _args[1] ) | |
| ; | |
| 5487 ^ | |
| 5488 | |
| 5489 1 error detected in the compilation of "ampanmda.cpp". | |
| >> 5490 make[3]: *** [makemod2c_inc:23: ampanmda.o] Error 2 | |
| 5491 make[3]: *** Waiting for unfinished jobs.... | |
| 5492 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/14c92ceb412f1b | |
| 4e766bfda05bec75b2d552a2f4499313751329f0689cf9faab/x86_64' | |
| >> 5493 make[2]: *** [test/external/olfactory-bulb-3d/CMakeFiles/NRN_TEST_ | |
| nrnivmodl_14c92ceb412f1b4e766bfda05bec75b2d552a2f4499313751329f068 | |
| 9cf9faab.dir/build.make:102: test/nrnivmodl/14c92ceb412f1b4e766bfd | |
| a05bec75b2d552a2f4499313751329f0689cf9faab/x86_64/special] Error 2 | |
| 5494 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug' | |
| >> 5495 make[1]: *** [CMakeFiles/Makefile2:11803: test/external/olfactory- | |
| bulb-3d/CMakeFiles/NRN_TEST_nrnivmodl_14c92ceb412f1b4e766bfda05bec | |
| 75b2d552a2f4499313751329f0689cf9faab.dir/all] Error 2 | |
| 5496 => LINKING shared library "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/263a5c542e063e | |
| e6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/x86_64/./libnrn | |
| mech.so" | |
| 5497 => LINKING executable "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f5 | |
| 72ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvil | |
| nx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/263a5c542e063ee676 | |
| 0ce51af8be262e1c89db6e16b2211fb308c533e45334f2/x86_64/./special" L | |
| DFLAGS are: | |
| 5498 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/263a5c542e063e | |
| e6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/x86_64' | |
| 5499 Successfully created x86_64/special | |
| 5500 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug' | |
| 5501 [ 50%] Built target NRN_TEST_nrnivmodl_263a5c542e063ee6760ce51af8b | |
| e262e1c89db6e16b2211fb308c533e45334f2 | |
| ... | |
| 5883 /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_ | |
| gcc-12.3.0-skylake/binutils-2.41-vvcm5q/bin/ld: NOTE: This behavio | |
| ur is deprecated and will be removed in a future version of the li | |
| nker | |
| 5884 make[3]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug/test/nrnivmodl/3a24bd33c51ee3 | |
| 0c68f71d610b146a37c165552933d5963dc6fd47c3be88641a/x86_64' | |
| 5885 Successfully created x86_64/special | |
| 5886 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug' | |
| 5887 [ 50%] Built target NRN_TEST_nrnivmodl_3a24bd33c51ee30c68f71d610b1 | |
| 46a37c165552933d5963dc6fd47c3be88641a | |
| 5888 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git | |
| .2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3 | |
| mvilnx3wj5ijyait/spack-build-nd2gzug' | |
| >> 5889 make: *** [Makefile:169: all] Error 2 | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322083/spack-build/spack-stage-neuron-git.2f572ccaec95275624d10698f5085839da1fef61_develop-nd2gzugxvnwpgyo3mvilnx3wj5ijyait/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r1i4n31: task 0: Exited with exit code 1 | |
| section_end:1718649002:step_script [0Ksection_start:1718649002:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=95748 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1322083 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=95787 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1322083 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=95831 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1322083 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1718649004:upload_artifacts_on_failure [0Ksection_start:1718649004:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1718649005:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1718645416:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1718645416:resolve_secrets [0Ksection_start:1718645416:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor70583923, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 217449, build ref , job ID 1322077 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1322077_PROD_P2160_CP1_C1 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2255386 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1322077_PROD_P2160_CP1_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449 --ntasks=2 --jobid=2255386 --cpus-per-task=8 --mem=160G | |
| section_end:1718645417:prepare_executor [0Ksection_start:1718645417:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n21 via bbpv1.epfl.ch... | |
| section_end:1718645420:prepare_script [0Ksection_start:1718645420:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1718645422:get_sources [0Ksection_start:1718645422:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=248830 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1718645449:restore_cache [0Ksection_start:1718645449:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for spack_setup (1322075)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=248977 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1322075 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1718645451:download_artifacts [0Ksection_start:1718645451:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322077/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322077/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322077/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322077/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322077/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322077/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/J1322075/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P217449/J1322077_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl%gcc ~legacy-unit | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2255386/ccache | |
| Config file: /nvme/bbpcihpcproj12/2255386/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Mon Jun 17 19:31:18 2024 | |
| Local storage: | |
| Cache size (GB): 0.45 / 0.51 (87.19%) | |
| Files: 5131 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl%gcc~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - 53hy2ex nmodl@git.5ff221d045c92389b4cab5ee159d46770aa12665=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449, but it is owned by 0 | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| ==> Installing nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665=develop-53hy2ex7xntc24cnbuojh6rrc3l2auap [19/19] | |
| ==> No binary for nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665=develop-53hy2ex7xntc24cnbuojh6rrc3l2auap found: installing from source | |
| ==> No patches needed for nmodl | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| ==> nmodl: Successfully installed nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665=develop-53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| Stage: 50.22s. Cmake: 2.78s. Build: 1m 29.52s. Install: 3.47s. Post-install: 0.36s. Total: 2m 26.61s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P217449/software/install_gcc-12.3.0-skylake/nmodl-git.5ff221d045c92389b4cab5ee159d46770aa12665_develop-53hy2e | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be 53hy2ex7xntc24cnbuojh6rrc3l2auap | |
| [32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2255386/ccache | |
| Config file: /nvme/bbpcihpcproj12/2255386/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Mon Jun 17 19:35:59 2024 | |
| Cacheable calls: 138 / 165 (83.64%) | |
| Hits: 136 / 138 (98.55%) | |
| Direct: 28 / 136 (20.59%) | |
| Preprocessed: 108 / 136 (79.41%) | |
| Misses: 2 / 138 ( 1.45%) | |
| Uncacheable calls: 27 / 165 (16.36%) | |
| Called for linking: 24 / 27 (88.89%) | |
| No input file: 3 / 27 (11.11%) | |
| Successful lookups: | |
| Direct: 28 / 138 (20.29%) | |
| Preprocessed: 108 / 110 (98.18%) | |
| Local storage: | |
| Cache size (GB): 0.45 / 0.51 (87.20%) | |
| Files: 5135 | |
| Hits: 136 / 138 (98.55%) | |
| Misses: 2 / 138 ( 1.45%) | |
| Reads: 276 | |
| Writes: 4 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1718645760:step_script [0Ksection_start:1718645760:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=251507 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1718645784:archive_cache [0Ksection_start:1718645784:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=251694 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1322077 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=251737 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1322077 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=251778 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1322077 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1718645786:upload_artifacts_on_success [0Ksection_start:1718645786:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1718645787:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m | |
| [0K on macos-arm64 vGzz-bdp[0;m | |
| section_start:1718645294:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1718645294:resolve_secrets [0Ksection_start:1718645294:prepare_executor [0K[0K[36;1mPreparing the "shell" executor[0;m[0;m | |
| [0KUsing Shell executor...[0;m | |
| section_end:1718645294:prepare_executor [0Ksection_start:1718645294:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on bbpmacglr01.bbp.epfl.ch... | |
| section_end:1718645294:prepare_script [0Ksection_start:1718645294:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mFetching changes with git depth set to 20...[0;m | |
| Initialized empty Git repository in /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/.git/ | |
| [32;1mCreated fresh repository.[0;m | |
| [32;1mChecking out 2f572cca as cornu/use_globals...[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1718645296:get_sources [0Ksection_start:1718645296:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-cornu/use_globals-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=arm64 os[0;m=darwin pid[0;m=80967 revision[0;m=43b2dc3d version[0;m=15.4.0 | |
| No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1718645296:restore_cache [0Ksection_start:1718645296:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [32;1m$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ real_python=$(python3 resolve_shim.py)[0;m | |
| [32;1m$ echo "python3=$(command -v python3) is really ${real_python}"[0;m | |
| python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python | |
| [32;1m$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv[0;m | |
| [32;1m$ venv/bin/python3 -m ensurepip --upgrade --default-pip[0;m | |
| Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpli1sqt81 | |
| Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpli1sqt81/setuptools-68.2.2-py3-none-any.whl | |
| Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpli1sqt81/pip-23.3.1-py3-none-any.whl | |
| Installing collected packages: setuptools, pip | |
| Successfully installed pip-23.3.1 setuptools-68.2.2 | |
| [32;1m$ git submodule update --init --recursive --force --depth 1 -- external/nmodl[0;m | |
| Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl' | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/nmodl'... | |
| From https://github.com/BlueBrain/nmodl | |
| * branch c5ecfea39cbd53ffcc248b1dcf732c1e0ae1ffc4 -> FETCH_HEAD | |
| Submodule path 'external/nmodl': checked out 'c5ecfea39cbd53ffcc248b1dcf732c1e0ae1ffc4' | |
| Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions' | |
| Submodule 'ext/backward' (https://github.com/bombela/backward-cpp.git) registered for path 'external/nmodl/ext/backward' | |
| Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2' | |
| Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11' | |
| Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen' | |
| Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt' | |
| Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json' | |
| Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11' | |
| Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog' | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/nmodl/ext/backward'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/nmodl/ext/catch2'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/nmodl/ext/cli11'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/nmodl/ext/eigen'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/nmodl/ext/fmt'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/nmodl/ext/json'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/nmodl/ext/pybind11'... | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/nmodl/ext/spdlog'... | |
| From https://github.com/BlueBrain/hpc-coding-conventions | |
| * branch f8f8d69a66c23978d1c9c5dce62de79466f26e5d -> FETCH_HEAD | |
| Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d' | |
| Submodule path 'external/nmodl/ext/backward': checked out '51f0700452cf71c57d43c2d028277b24cde32502' | |
| From https://github.com/catchorg/Catch2 | |
| * branch 8ac8190e494a381072c89f5e161b92a08d98b37b -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b' | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch f4d0731cebb123ff0ace712c099dffbcd2c58e5a -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/cli11': checked out 'f4d0731cebb123ff0ace712c099dffbcd2c58e5a' | |
| From https://gitlab.com/libeigen/eigen | |
| * branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
| From https://github.com/fmtlib/fmt | |
| * branch e69e5f977d458f2650bb346dadf2ad30c5320281 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/fmt': checked out 'e69e5f977d458f2650bb346dadf2ad30c5320281' | |
| From https://github.com/nlohmann/json | |
| * branch 9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/json': checked out '9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03' | |
| From https://github.com/pybind/pybind11 | |
| * branch 3e9dfa2866941655c56877882565e7577de6fc7b -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/pybind11': checked out '3e9dfa2866941655c56877882565e7577de6fc7b' | |
| From https://github.com/gabime/spdlog | |
| * branch 7c02e204c92545f869e2f04edaab1f19fe8b19fd -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/spdlog': checked out '7c02e204c92545f869e2f04edaab1f19fe8b19fd' | |
| [32;1m$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt[0;m | |
| Ignoring importlib-metadata: markers 'python_version < "3.9"' don't match your environment | |
| Ignoring importlib-resources: markers 'python_version < "3.9"' don't match your environment | |
| Collecting scikit-build-core (from -r external/nmodl/requirements.txt (line 2)) | |
| Using cached scikit_build_core-0.9.6-py3-none-any.whl.metadata (19 kB) | |
| Collecting setuptools-scm>=8.0 (from -r external/nmodl/requirements.txt (line 3)) | |
| Using cached setuptools_scm-8.1.0-py3-none-any.whl.metadata (6.6 kB) | |
| Collecting Jinja2>=2.9.3 (from -r external/nmodl/requirements.txt (line 4)) | |
| Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) | |
| Collecting PyYAML>=3.13 (from -r external/nmodl/requirements.txt (line 5)) | |
| Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB) | |
| Collecting find_libpython (from -r external/nmodl/requirements.txt (line 7)) | |
| Using cached find_libpython-0.4.0-py3-none-any.whl.metadata (2.8 kB) | |
| Collecting sympy>=1.3 (from -r external/nmodl/requirements.txt (line 8)) | |
| Using cached sympy-1.12.1-py3-none-any.whl.metadata (12 kB) | |
| Collecting pytest<=8.1.1 (from -r external/nmodl/requirements.txt (line 12)) | |
| Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB) | |
| Collecting pytest-cov (from -r external/nmodl/requirements.txt (line 13)) | |
| Using cached pytest_cov-5.0.0-py3-none-any.whl.metadata (27 kB) | |
| Collecting numpy (from -r external/nmodl/requirements.txt (line 14)) | |
| Using cached numpy-2.0.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (114 kB) | |
| Collecting jupyter-client (from -r external/nmodl/requirements.txt (line 16)) | |
| Using cached jupyter_client-8.6.2-py3-none-any.whl.metadata (8.3 kB) | |
| Collecting jupyter (from -r external/nmodl/requirements.txt (line 17)) | |
| Using cached jupyter-1.0.0-py2.py3-none-any.whl.metadata (995 bytes) | |
| Collecting myst_parser<2.0.0 (from -r external/nmodl/requirements.txt (line 18)) | |
| Using cached myst_parser-1.0.0-py3-none-any.whl.metadata (5.5 kB) | |
| Collecting mistune<3 (from -r external/nmodl/requirements.txt (line 19)) | |
| Using cached mistune-2.0.5-py2.py3-none-any.whl.metadata (1.5 kB) | |
| Collecting nbconvert (from -r external/nmodl/requirements.txt (line 20)) | |
| Using cached nbconvert-7.16.4-py3-none-any.whl.metadata (8.5 kB) | |
| Collecting nbsphinx>=0.3.2 (from -r external/nmodl/requirements.txt (line 21)) | |
| Using cached nbsphinx-0.9.4-py3-none-any.whl.metadata (2.1 kB) | |
| Collecting sphinxcontrib-applehelp<1.0.3 (from -r external/nmodl/requirements.txt (line 22)) | |
| Using cached sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl.metadata (1.4 kB) | |
| Collecting sphinxcontrib-htmlhelp<=2.0.0 (from -r external/nmodl/requirements.txt (line 23)) | |
| Using cached sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl.metadata (1.6 kB) | |
| Collecting sphinx<6 (from -r external/nmodl/requirements.txt (line 24)) | |
| Using cached sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB) | |
| Collecting sphinx-rtd-theme (from -r external/nmodl/requirements.txt (line 25)) | |
| Using cached sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl.metadata (4.4 kB) | |
| Collecting docutils<0.20 (from -r external/nmodl/requirements.txt (line 26)) | |
| Using cached docutils-0.19-py3-none-any.whl.metadata (2.7 kB) | |
| Collecting exceptiongroup>=1.0 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) | |
| Using cached exceptiongroup-1.2.1-py3-none-any.whl.metadata (6.6 kB) | |
| Collecting packaging>=21.3 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) | |
| Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) | |
| Collecting pathspec>=0.10.1 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) | |
| Using cached pathspec-0.12.1-py3-none-any.whl.metadata (21 kB) | |
| Collecting tomli>=1.2.2 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2)) | |
| Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB) | |
| Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from setuptools-scm>=8.0->-r external/nmodl/requirements.txt (line 3)) (68.2.2) | |
| Collecting MarkupSafe>=2.0 (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 4)) | |
| Using cached MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl.metadata (3.0 kB) | |
| Collecting mpmath<1.4.0,>=1.1.0 (from sympy>=1.3->-r external/nmodl/requirements.txt (line 8)) | |
| Using cached mpmath-1.3.0-py3-none-any.whl.metadata (8.6 kB) | |
| Collecting iniconfig (from pytest<=8.1.1->-r external/nmodl/requirements.txt (line 12)) | |
| Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB) | |
| Collecting pluggy<2.0,>=1.4 (from pytest<=8.1.1->-r external/nmodl/requirements.txt (line 12)) | |
| Using cached pluggy-1.5.0-py3-none-any.whl.metadata (4.8 kB) | |
| Collecting coverage>=5.2.1 (from coverage[toml]>=5.2.1->pytest-cov->-r external/nmodl/requirements.txt (line 13)) | |
| Using cached coverage-7.5.3-cp310-cp310-macosx_11_0_arm64.whl.metadata (8.2 kB) | |
| Collecting jupyter-core!=5.0.*,>=4.12 (from jupyter-client->-r external/nmodl/requirements.txt (line 16)) | |
| Using cached jupyter_core-5.7.2-py3-none-any.whl.metadata (3.4 kB) | |
| Collecting python-dateutil>=2.8.2 (from jupyter-client->-r external/nmodl/requirements.txt (line 16)) | |
| Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) | |
| Collecting pyzmq>=23.0 (from jupyter-client->-r external/nmodl/requirements.txt (line 16)) | |
| Using cached pyzmq-26.0.3-cp310-cp310-macosx_10_15_universal2.whl.metadata (6.1 kB) | |
| Collecting tornado>=6.2 (from jupyter-client->-r external/nmodl/requirements.txt (line 16)) | |
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| Collecting arrow>=0.15.0 (from isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
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| Collecting types-python-dateutil>=2.8.10 (from arrow>=0.15.0->isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17)) | |
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| Installing collected packages: webencodings, wcwidth, snowballstemmer, pure-eval, ptyprocess, mpmath, mistune, find_libpython, fastjsonschema, widgetsnbextension, websocket-client, webcolors, urllib3, uri-template, typing-extensions, types-python-dateutil, traitlets, tornado, tomli, tinycss2, sympy, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, sniffio, six, send2trash, rpds-py, rfc3986-validator, pyzmq, PyYAML, python-json-logger, pygments, pycparser, psutil, prompt-toolkit, prometheus-client, pluggy, platformdirs, pexpect, pathspec, parso, pandocfilters, packaging, overrides, numpy, nest-asyncio, mdurl, MarkupSafe, jupyterlab-widgets, jupyterlab-pygments, jsonpointer, json5, iniconfig, imagesize, idna, h11, fqdn, executing, exceptiongroup, docutils, defusedxml, decorator, debugpy, coverage, charset-normalizer, certifi, babel, attrs, appnope, alabaster, terminado, setuptools-scm, scikit-build-core, rfc3339-validator, requests, referencing, qtpy, python-dateutil, pytest, matplotlib-inline, markdown-it-py, jupyter-core, Jinja2, jedi, httpcore, comm, cffi, bleach, beautifulsoup4, async-lru, asttokens, anyio, stack-data, sphinx, pytest-cov, mdit-py-plugins, jupyter-server-terminals, jupyter-client, jsonschema-specifications, httpx, arrow, argon2-cffi-bindings, sphinxcontrib-jquery, myst_parser, jsonschema, isoduration, ipython, argon2-cffi, sphinx-rtd-theme, nbformat, ipywidgets, ipykernel, qtconsole, nbclient, jupyter-events, jupyter-console, nbconvert, nbsphinx, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab, notebook, jupyter | |
| Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 PyYAML-6.0.1 alabaster-0.7.16 anyio-4.4.0 appnope-0.1.4 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 asttokens-2.4.1 async-lru-2.0.4 attrs-23.2.0 babel-2.15.0 beautifulsoup4-4.12.3 bleach-6.1.0 certifi-2024.6.2 cffi-1.16.0 charset-normalizer-3.3.2 comm-0.2.2 coverage-7.5.3 debugpy-1.8.1 decorator-5.1.1 defusedxml-0.7.1 docutils-0.19 exceptiongroup-1.2.1 executing-2.0.1 fastjsonschema-2.20.0 find_libpython-0.4.0 fqdn-1.5.1 h11-0.14.0 httpcore-1.0.5 httpx-0.27.0 idna-3.7 imagesize-1.4.1 iniconfig-2.0.0 ipykernel-6.29.4 ipython-8.25.0 ipywidgets-8.1.3 isoduration-20.11.0 jedi-0.19.1 json5-0.9.25 jsonpointer-3.0.0 jsonschema-4.22.0 jsonschema-specifications-2023.12.1 jupyter-1.0.0 jupyter-client-8.6.2 jupyter-console-6.6.3 jupyter-core-5.7.2 jupyter-events-0.10.0 jupyter-lsp-2.2.5 jupyter-server-2.14.1 jupyter-server-terminals-0.5.3 jupyterlab-4.2.2 jupyterlab-pygments-0.3.0 jupyterlab-server-2.27.2 jupyterlab-widgets-3.0.11 markdown-it-py-2.2.0 matplotlib-inline-0.1.7 mdit-py-plugins-0.3.5 mdurl-0.1.2 mistune-2.0.5 mpmath-1.3.0 myst_parser-1.0.0 nbclient-0.10.0 nbconvert-7.16.4 nbformat-5.10.4 nbsphinx-0.9.4 nest-asyncio-1.6.0 notebook-7.2.1 notebook-shim-0.2.4 numpy-2.0.0 overrides-7.7.0 packaging-24.1 pandocfilters-1.5.1 parso-0.8.4 pathspec-0.12.1 pexpect-4.9.0 platformdirs-4.2.2 pluggy-1.5.0 prometheus-client-0.20.0 prompt-toolkit-3.0.47 psutil-5.9.8 ptyprocess-0.7.0 pure-eval-0.2.2 pycparser-2.22 pygments-2.18.0 pytest-8.1.1 pytest-cov-5.0.0 python-dateutil-2.9.0.post0 python-json-logger-2.0.7 pyzmq-26.0.3 qtconsole-5.5.2 qtpy-2.4.1 referencing-0.35.1 requests-2.32.3 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.18.1 scikit-build-core-0.9.6 send2trash-1.8.3 setuptools-scm-8.1.0 six-1.16.0 sniffio-1.3.1 snowballstemmer-2.2.0 soupsieve-2.5 sphinx-5.3.0 sphinx-rtd-theme-2.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 stack-data-0.6.3 sympy-1.12.1 terminado-0.18.1 tinycss2-1.3.0 tomli-2.0.1 tornado-6.4.1 traitlets-5.14.3 types-python-dateutil-2.9.0.20240316 typing-extensions-4.12.2 uri-template-1.3.0 urllib3-2.2.2 wcwidth-0.2.13 webcolors-24.6.0 webencodings-0.5.1 websocket-client-1.8.0 widgetsnbextension-4.0.11 | |
| [notice] A new release of pip is available: 23.3.1 -> 24.0 | |
| [notice] To update, run: /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/venv/bin/python3 -m pip install --upgrade pip | |
| [32;1m$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt[0;m | |
| Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (23.3.1) | |
| Collecting pip | |
| Using cached pip-24.0-py3-none-any.whl.metadata (3.6 kB) | |
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| Using cached wheel-0.43.0-py3-none-any.whl.metadata (2.2 kB) | |
| Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (68.2.2) | |
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| Requirement already satisfied: setuptools_scm in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 3)) (8.1.0) | |
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| Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB) | |
| Requirement already satisfied: packaging in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 10)) (24.1) | |
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| Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 15)) (0.4.0) | |
| Requirement already satisfied: tomli>=1 in ./venv/lib/python3.10/site-packages (from setuptools_scm->-r nrn_requirements.txt (line 3)) (2.0.1) | |
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| Collecting fonttools>=4.22.0 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached fonttools-4.53.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (162 kB) | |
| Collecting kiwisolver>=1.3.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.4 kB) | |
| Collecting pillow>=8 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached pillow-10.3.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.2 kB) | |
| Collecting pyparsing>=2.3.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB) | |
| Requirement already satisfied: python-dateutil>=2.7 in ./venv/lib/python3.10/site-packages (from matplotlib->-r nrn_requirements.txt (line 5)) (2.9.0.post0) | |
| Requirement already satisfied: Jinja2>=2.9 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (3.1.4) | |
| Requirement already satisfied: PyYAML>=3.10 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (6.0.1) | |
| Requirement already satisfied: tornado>=5.1 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (6.4.1) | |
| Requirement already satisfied: typing-extensions>=3.10.0 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (4.12.2) | |
| Requirement already satisfied: decorator in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (5.1.1) | |
| Requirement already satisfied: jedi>=0.16 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.19.1) | |
| Requirement already satisfied: matplotlib-inline in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.1.7) | |
| Requirement already satisfied: prompt-toolkit<3.1.0,>=3.0.41 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (3.0.47) | |
| Requirement already satisfied: pygments>=2.4.0 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (2.18.0) | |
| Requirement already satisfied: stack-data in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.6.3) | |
| Requirement already satisfied: traitlets>=5.13.0 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (5.14.3) | |
| Requirement already satisfied: exceptiongroup in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (1.2.1) | |
| Requirement already satisfied: pexpect>4.3 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (4.9.0) | |
| Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest<=8.1.1->-r nrn_requirements.txt (line 11)) (2.0.0) | |
| Requirement already satisfied: pluggy<2.0,>=1.4 in ./venv/lib/python3.10/site-packages (from pytest<=8.1.1->-r nrn_requirements.txt (line 11)) (1.5.0) | |
| Requirement already satisfied: coverage>=5.2.1 in ./venv/lib/python3.10/site-packages (from coverage[toml]>=5.2.1->pytest-cov->-r nrn_requirements.txt (line 12)) (7.5.3) | |
| Requirement already satisfied: parso<0.9.0,>=0.8.3 in ./venv/lib/python3.10/site-packages (from jedi>=0.16->ipython->-r nrn_requirements.txt (line 8)) (0.8.4) | |
| Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9->bokeh<3->-r nrn_requirements.txt (line 7)) (2.1.5) | |
| Requirement already satisfied: ptyprocess>=0.5 in ./venv/lib/python3.10/site-packages (from pexpect>4.3->ipython->-r nrn_requirements.txt (line 8)) (0.7.0) | |
| Requirement already satisfied: wcwidth in ./venv/lib/python3.10/site-packages (from prompt-toolkit<3.1.0,>=3.0.41->ipython->-r nrn_requirements.txt (line 8)) (0.2.13) | |
| Requirement already satisfied: six>=1.5 in ./venv/lib/python3.10/site-packages (from python-dateutil>=2.7->matplotlib->-r nrn_requirements.txt (line 5)) (1.16.0) | |
| Requirement already satisfied: executing>=1.2.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (2.0.1) | |
| Requirement already satisfied: asttokens>=2.1.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (2.4.1) | |
| Requirement already satisfied: pure-eval in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (0.2.2) | |
| Using cached pip-24.0-py3-none-any.whl (2.1 MB) | |
| Using cached wheel-0.43.0-py3-none-any.whl (65 kB) | |
| Using cached setuptools-70.0.0-py3-none-any.whl (863 kB) | |
| Using cached scikit_build-0.17.6-py3-none-any.whl (84 kB) | |
| Using cached matplotlib-3.9.0-cp310-cp310-macosx_11_0_arm64.whl (7.8 MB) | |
| Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB) | |
| Using cached Cython-0.29.37-py2.py3-none-any.whl (989 kB) | |
| Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB) | |
| Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl (244 kB) | |
| Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB) | |
| Using cached fonttools-4.53.0-cp310-cp310-macosx_11_0_arm64.whl (2.2 MB) | |
| Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB) | |
| Using cached pillow-10.3.0-cp310-cp310-macosx_11_0_arm64.whl (3.4 MB) | |
| Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB) | |
| Using cached distro-1.9.0-py3-none-any.whl (20 kB) | |
| Installing collected packages: wheel, setuptools, pyparsing, pip, pillow, numpy, mpi4py, kiwisolver, fonttools, distro, cython, cycler, scikit-build, contourpy, bokeh, matplotlib | |
| Attempting uninstall: setuptools | |
| Found existing installation: setuptools 68.2.2 | |
| Uninstalling setuptools-68.2.2: | |
| Successfully uninstalled setuptools-68.2.2 | |
| Attempting uninstall: pip | |
| Found existing installation: pip 23.3.1 | |
| Uninstalling pip-23.3.1: | |
| Successfully uninstalled pip-23.3.1 | |
| Attempting uninstall: numpy | |
| Found existing installation: numpy 2.0.0 | |
| Uninstalling numpy-2.0.0: | |
| Successfully uninstalled numpy-2.0.0 | |
| Successfully installed bokeh-2.4.3 contourpy-1.2.1 cycler-0.12.1 cython-0.29.37 distro-1.9.0 fonttools-4.53.0 kiwisolver-1.4.5 matplotlib-3.9.0 mpi4py-3.1.6 numpy-1.26.4 pillow-10.3.0 pip-24.0 pyparsing-3.1.2 scikit-build-0.17.6 setuptools-70.0.0 wheel-0.43.0 | |
| [32;1m$ source ./venv/bin/activate[0;m | |
| [32;1m$ export PYTHON=${PWD}/venv/bin/python[0;m | |
| [32;1m$ ${PYTHON} --version[0;m | |
| Python 3.10.13 | |
| [32;1m$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"[0;m | |
| [32;1m$ export CXX=${CXX:-g++}[0;m | |
| [32;1m$ export CC=${CC:-gcc}[0;m | |
| [32;1m$ brew install flex bison[0;m | |
| Warning: flex 2.6.4_2 is already installed and up-to-date. | |
| To reinstall 2.6.4_2, run: | |
| brew reinstall flex | |
| Warning: bison 3.8.2 is already installed and up-to-date. | |
| To reinstall 3.8.2, run: | |
| brew reinstall bison | |
| [32;1m$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"[0;m | |
| [32;1m$ export INSTALL_DIR=$(pwd)/install[0;m | |
| [32;1m$ echo $LANG[0;m | |
| [32;1m$ echo $LC_ALL[0;m | |
| [32;1m$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")[0;m | |
| [32;1m$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'[0;m | |
| [32;1m$ cmake_args=(-G Ninja)[0;m | |
| [32;1m$ if [[ -n "${sanitizer}" ]]; then[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})[0;m | |
| [32;1m$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")[0;m | |
| [32;1m$ mkdir build && cd build[0;m | |
| [32;1m$ echo "Building with ${cmake_args[@]}"[0;m | |
| Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/venv/bin/python | |
| [32;1m$ cmake .. "${cmake_args[@]}"[0;m | |
| -- The C compiler identification is AppleClang 14.0.0.14000029 | |
| -- The CXX compiler identification is AppleClang 14.0.0.14000029 | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working C compiler: /usr/bin/gcc - skipped | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Check for working CXX compiler: /usr/bin/g++ - skipped | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check | |
| -- Sub-module : missing external/coding-conventions : running git submodule update --init | |
| Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions' | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/coding-conventions'... | |
| Submodule path 'external/coding-conventions': checked out '3d157f9c8ea94d196a825aaa7f523265e360dc4b' | |
| -- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123 | |
| Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123' | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/Random123'... | |
| From https://github.com/BlueBrain/Random123 | |
| * branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD | |
| Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1' | |
| -- 3rd party project: using Random123 from "external/Random123" | |
| -- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen | |
| Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen' | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/eigen'... | |
| From https://gitlab.com/libeigen/eigen | |
| * branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
| Submodule path 'external/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
| -- 3rd party project: using eigen from "external/eigen" | |
| -- Enabling sanitizers: address | |
| -- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
| -- Checking if /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/venv/bin/python is a working python | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2") | |
| -- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6") | |
| -- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include | |
| -- Found MPI_C: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success | |
| -- Found Threads: TRUE | |
| -- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11 | |
| Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11' | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/CLI11'... | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD | |
| Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2' | |
| -- 3rd party project: using CLI11 from "external/CLI11" | |
| CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required): | |
| Compatibility with CMake < 3.5 will be removed from a future version of | |
| CMake. | |
| Update the VERSION argument <min> value or use a ...<max> suffix to tell | |
| CMake that the project does not need compatibility with older versions. | |
| -- Building CoreNEURON | |
| -- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)") | |
| -- Found Perl: /usr/bin/perl (found version "5.30.3") | |
| -- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH) | |
| -- Sub-project : using nmodl from from /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/nmodl | |
| -- CHECKING FOR FLEX/BISON | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0") | |
| -- Adding Flex include path as : /opt/homebrew/opt/flex/include/ | |
| -- NMODL_TEST_FORMATTING: OFF | |
| -- NMODL_GIT_HOOKS: OFF | |
| -- NMODL_GIT_COMMIT_HOOKS: | |
| -- NMODL_GIT_PUSH_HOOKS: courtesy-msg | |
| -- NMODL_STATIC_ANALYSIS: OFF | |
| -- NMODL_TEST_STATIC_ANALYSIS: OFF | |
| -- 3rd party project: using eigen from "ext/eigen" | |
| -- 3rd party project: using fmt from "ext/fmt" | |
| -- Version: 10.2.1 | |
| -- Build type: Custom | |
| -- 3rd party project: using json from "ext/json" | |
| -- Using the multi-header code from /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/nmodl/ext/json/include/ | |
| -- 3rd party project: using pybind11 from "ext/pybind11" | |
| -- pybind11 v2.12.0 | |
| -- Found PythonInterp: /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.6") | |
| -- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- 3rd party project: using spdlog from "ext/spdlog" | |
| -- Build spdlog: 1.13.0 | |
| -- Build type: Custom | |
| -- CHECKING FOR PYTHON | |
| -- Found Python: /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/venv/bin/python3.10 (found suitable version "3.10.13", minimum required is "3.8") found components: Interpreter | |
| CMake Warning (dev) at external/nmodl/src/pybind/CMakeLists.txt:27 (configure_file): | |
| configure_file called with unknown argument(s): | |
| @ONLY@ | |
| This warning is for project developers. Use -Wno-dev to suppress it. | |
| -- | |
| -- Configured NMODL 0.0 (c5ecfea 2024-06-10 16:25:23 +0200) | |
| -- | |
| -- You can now build NMODL using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------------+-------------------------------------------------------- | |
| -- test | Run unit tests | |
| -- install | Will install NMODL to: /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/install | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd | |
| -- Build Type | Custom | |
| -- Python Bindings | OFF | |
| -- Flex | /opt/homebrew/opt/flex/bin/flex | |
| -- Bison | /opt/homebrew/opt/bison/bin/bison | |
| -- Python | /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/venv/bin/python | |
| -- Linked against | ON | |
| -- --------------------+-------------------------------------------------------- | |
| -- See documentation : https://github.com/BlueBrain/nmodl/ | |
| -- --------------------+-------------------------------------------------------- | |
| -- | |
| -- | |
| -- CoreNEURON is enabled with following build configuration: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope | |
| -- Build Type | SHARED | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include | |
| -- OpenMP | ON | |
| -- NMODL PATH | /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/build/bin/nmodl | |
| -- NMODL FLAGS | | |
| -- GPU Support | OFF | |
| -- Auto Timeout | ON | |
| -- Wrap exp() | OFF | |
| -- SplayTree Queue | ON | |
| -- NetReceive Buffer | ON | |
| -- Caliper | OFF | |
| -- Likwid | OFF | |
| -- Unit Tests | ON | |
| -- Reporting | OFF | |
| -- --------------------+-------------------------------------------------------- | |
| -- | |
| Extracting link flags from target 'nrngnu', beware that this can be fragile. Got: | |
| Extracting link flags from target 'sparse13', beware that this can be fragile. Got: | |
| Generating link flags from name 'nrnpython', beware that this can be fragile. Got: -lnrnpython | |
| Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: -lnrnpython | |
| Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
| -- Sub-module : missing /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/catch2 : running git submodule update --init | |
| Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2' | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/external/catch2'... | |
| Submodule path 'external/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b' | |
| -- Found Python module 'pytest' with version(s): 8.1.1 | |
| -- Found Python module 'pytest_cov' with version(s): 5.0.0 | |
| -- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata | |
| Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata' | |
| Cloning into '/Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/test/rxd/testdata'... | |
| From https://github.com/neuronsimulator/rxdtestdata | |
| * branch 30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD | |
| Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58' | |
| -- 3rd party project: using rxd/testdata from "test/rxd/testdata" | |
| -- Found Python module 'mpi4py' with version(s): 3.1.6 | |
| -- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_nmodlrandom_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_nmodlrandom_syntax_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_file_mode_py_gpu: gpu not enabled | |
| -- Found Python module 'mpi4py' with version(s): 3.1.6 | |
| -- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled | |
| -- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled | |
| -- Found OpenSSL: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib (found version "3.2.0") | |
| -- | |
| -- Configured NEURON 9.0.0 | |
| -- | |
| -- You can now build NEURON using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------+-------------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------+-------------------------------------------------------------- | |
| -- install | Will install NEURON to: /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/install | |
| -- | Change the install location of NEURON using: | |
| -- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path> | |
| -- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean | |
| -- uninstall | Removes files installed by make install (todo) | |
| -- --------------+-------------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------+-------------------------------------------------------------- | |
| -- C COMPILER | /usr/bin/gcc | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug) | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd | |
| -- Shared | ON | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include | |
| -- LIB | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib | |
| -- Python | ON | |
| -- DYNAMIC | OFF | |
| -- MODULE | ON | |
| -- python3.10 (default) | |
| -- EXE | /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/venv/bin/python | |
| -- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 | |
| -- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd | |
| -- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd | |
| -- RX3D | OFF | |
| -- Interviews | OFF | |
| -- CoreNEURON | ON | |
| -- PATH | /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/src/coreneuron | |
| -- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib | |
| -- Tests | ON | |
| -- --------------+-------------------------------------------------------------- | |
| -- See documentation : https://www.neuron.yale.edu/neuron/ | |
| -- --------------+-------------------------------------------------------------- | |
| -- | |
| -- Configuring done (24.0s) | |
| -- Generating done (0.2s) | |
| -- Build files have been written to: /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/build | |
| [32;1m$ ccache -z[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache -vs 2>/dev/null[0;m | |
| Cache directory: /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/ccache | |
| Config file: /Users/gitlab-runner/builds/2/P217449/J1322074/hpc/cellular/nrn/ccache/ccache.conf | |
| System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf | |
| Stats updated: Mon Jun 17 19:29:29 2024 | |
| Local storage: | |
| Cache size (GiB): 0.0 / 5.0 ( 0.00%) | |
| Files: 0 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ cmake --build . --parallel[0;m | |
| [0/2] Re-checking globbed directories... | |
| [1/1930] Generating share/nrn/demo/demo.ses | |
| [2/1930] Generating share/nrn/demo/dend3/dend3.nrn | |
| [3/1930] Generating share/nrn/demo/cycle.hoc | |
| [4/1930] Generating share/nrn/demo/d3init.hoc | |
| [5/1930] Generating share/nrn/demo/dend3/control.hoc | |
| [6/1930] Generating share/nrn/demo/dend3/syn3.hoc | |
| [7/1930] Generating share/nrn/demo/dend3.ses | |
| [8/1930] Generating share/nrn/demo/demo.hoc | |
| [9/1930] Generating share/nrn/demo/dynchan.ses | |
| [10/1930] Generating share/nrn/demo/dynclamp.hoc | |
| [11/1930] Generating share/nrn/demo/dynclamp.ses | |
| [12/1930] Generating share/nrn/demo/hh.hoc | |
| [13/1930] Generating share/nrn/demo/hh.ses | |
| [14/1930] Generating share/nrn/demo/nomodel.hoc | |
| [15/1930] Generating share/nrn/demo/reconst.hoc | |
| [16/1930] Generating share/nrn/demo/pyramid.nrn | |
| [17/1930] Update hh.mod for CoreNEURON compatibility | |
| [18/1930] Generating share/nrn/demo/pyramid.ses | |
| [19/1930] Generating share/nrn/demo/release.hoc | |
| [20/1930] Generating share/nrn/demo/release/cabpump.mod | |
| [21/1930] Generating share/nrn/demo/release.ses | |
| [22/1930] Generating share/nrn/demo/release/invlfire.mod | |
| [23/1930] Generating share/nrn/demo/release/cachan1.mod | |
| [24/1930] Generating share/nrn/demo/release/camchan.mod | |
| [25/1930] Generating share/nrn/demo/release/capump.mod | |
| [26/1930] Generating share/nrn/demo/release/nacaex.mod | |
| [27/1930] Generating share/nrn/demo/release/nachan.mod | |
| [28/1930] Generating share/nrn/demo/rele |
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