Created
July 6, 2023 10:59
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/136739 (:no_entry:) running on GitHub PR neuronsimulator/nrn#2389.
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1688640514:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1688640514:resolve_secrets [0Ksection_start:1688640514:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2414645909, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 136739, build ref , job ID 796665 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J796665_PROD_P2160_CP0_C0 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1609431 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J796665_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739 --ntasks=2 --jobid=1609431 --cpus-per-task=8 --mem=76G | |
| section_end:1688640516:prepare_executor [0Ksection_start:1688640516:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i6n25 via bbpv1.epfl.ch... | |
| section_end:1688640519:prepare_script [0Ksection_start:1688640519:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1688640520:get_sources [0Ksection_start:1688640520:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=103544 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1688640526:restore_cache [0Ksection_start:1688640526:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (796664)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=103668 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=796664 responseStatus[0;m=200 OK token[0;m=64_2457- | |
| section_end:1688640527:download_artifacts [0Ksection_start:1688640527:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739/J796665_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/zlmltvgvaevja4rnq63lrqpowknrsuu3 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1609431/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1609431/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Jul 6 12:48:52 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.45 / 0.51 (88.42 %) | |
| Files: 22004 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - zc2f6fb neuron@develop%oneapi@2022.2.1~caliper~codegenopt+coreneuron~gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
| [^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
| [^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
| [^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7pokw4h ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| - dvav7kc ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] einzmbz ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake | |
| [^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] zlmltvg ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] hexz5ps ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
| [+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| ==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
| ==> Installing libsonata-report-develop-dvav7kcoa4bw2beztpa4apwx6uizgkcn | |
| ==> No binary for libsonata-report-develop-dvav7kcoa4bw2beztpa4apwx6uizgkcn found: installing from source | |
| ==> No patches needed for libsonata-report | |
| ==> libsonata-report: Executing phase: 'cmake' | |
| ==> libsonata-report: Executing phase: 'build' | |
| ==> libsonata-report: Executing phase: 'install' | |
| ==> libsonata-report: Successfully installed libsonata-report-develop-dvav7kcoa4bw2beztpa4apwx6uizgkcn | |
| Fetch: 2.50s. Build: 5.29s. Total: 7.79s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2.0-skylake/libsonata-report-develop-dvav7k | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2.0-skylake/nmodl-develop-zlmltv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml | |
| ==> Installing neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn | |
| ==> No binary for neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 1: | |
| '/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc/bin/ninja' '-j8' '-v' | |
| 7 errors found in build log: | |
| 1052 icpx: warning: -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021 | |
| .4.0-q7vl7m/mkl/2021.4.0/lib/intel64: 'linker' input unused [-Wunu | |
| sed-command-line-argument] | |
| 1053 [648/2075] cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfe | |
| ayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb/bin && /gpfs/bbp.cscs.c | |
| h/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skyla | |
| ke/cmake-3.24.3-4blf3d/bin/cmake -E env NMODLHOME= /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/ | |
| spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack- | |
| build-zc2f6fb/bin/nrnivmodl-core -b STATIC -m /gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2 | |
| .0-skylake/nmodl-develop-zlmltv/bin/nmodl -n internal -p 4 . | |
| 1054 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuron- | |
| develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb/bin', | |
| compiling default ones only! | |
| 1055 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuron-deve | |
| lop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb/share/cor | |
| eneuron/nrnivmodl_core_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_ | |
| map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-ne | |
| uron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb | |
| MECHLIB_SUFFIX=internal NMODL_BINARY=/gpfs/bbp.cscs.ch/ssd/gitlab_ | |
| map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2.0-skylak | |
| e/nmodl-develop-zlmltv/bin/nmodl MODS_PATH=x86_64/corenrn/mod2c BU | |
| ILD_TYPE=STATIC NRN_PRCELLSTATE=0 | |
| 1056 make: xcrun: Command not found | |
| 1057 Default NMODL flags: | |
| >> 1058 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 1059 [NMODL] [info] :: Processing x86_64/corenrn/mod2c/expsyn.mod | |
| 1060 [NMODL] [info] :: Running symtab visitor | |
| 1061 [NMODL] [info] :: Running semantic analysis visitor | |
| 1062 [NMODL] [info] :: Running CVode to cnexp visitor | |
| 1063 [NMODL] [info] :: Running code compatibility checker | |
| 1064 [NMODL] [info] :: Running verbatim rename visitor | |
| ... | |
| 1187 icpx: warning: -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021 | |
| .4.0-q7vl7m/mkl/2021.4.0/lib/intel64: 'linker' input unused [-Wunu | |
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| XPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd | |
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| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build- | |
| zc2f6fb -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P13 | |
| 6739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk2 | |
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| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/sr | |
| c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J | |
| 796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaaw | |
| on7t4wwf3obn/spack-src/external/Random123/include -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build | |
| /spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack | |
| -build-zc2f6fb/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps | |
| /bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python- | |
| 3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/ | |
| 2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25 | |
| .hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-z | |
| c2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/nrniv/nrniv_lib -I/g | |
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| /spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4w | |
| wf3obn/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuron-deve | |
| lop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb/src/ivos | |
| -g -fno-omit-frame-pointer -O1 -fp-model=precise -march=skylake -m | |
| tune=skylake -fPIC -pthread -std=c++17 -MD -MT src/nrniv/CMakeFile | |
| s/nrniv_lib.dir/__/ivoc/htlist.cpp.o -MF src/nrniv/CMakeFiles/nrni | |
| v_lib.dir/__/ivoc/htlist.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib | |
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| /bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuron-dev | |
| elop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/ivoc/htlist.cp | |
| p | |
| 1189 icpx: warning: -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021 | |
| .4.0-q7vl7m/mkl/2021.4.0/lib/intel64: 'linker' input unused [-Wunu | |
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| 1190 [652/2075] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
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| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_E | |
| XPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build- | |
| zc2f6fb -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P13 | |
| 6739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk2 | |
| 2uhaawon7t4wwf3obn/spack-build-zc2f6fb/src -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/sr | |
| c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J | |
| 796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaaw | |
| on7t4wwf3obn/spack-src/external/Random123/include -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build | |
| /spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack | |
| -build-zc2f6fb/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps | |
| /bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python- | |
| 3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/ | |
| 2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25 | |
| .hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-z | |
| c2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/nrniv/nrniv_lib -I/g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665 | |
| /spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4w | |
| wf3obn/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuron-deve | |
| lop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb/src/ivos | |
| -g -fno-omit-frame-pointer -O1 -fp-model=precise -march=skylake -m | |
| tune=skylake -fPIC -pthread -std=c++17 -MD -MT src/nrniv/CMakeFile | |
| s/nrniv_lib.dir/__/ivoc/grglyph.cpp.o -MF src/nrniv/CMakeFiles/nrn | |
| iv_lib.dir/__/ivoc/grglyph.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_l | |
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| obs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuron- | |
| develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/ivoc/grglyp | |
| h.cpp | |
| 1191 icpx: warning: -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021 | |
| .4.0-q7vl7m/mkl/2021.4.0/lib/intel64: 'linker' input unused [-Wunu | |
| sed-command-line-argument] | |
| 1192 [653/2075] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/oneapi/icpx -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_E | |
| XPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build- | |
| zc2f6fb -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P13 | |
| 6739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk2 | |
| 2uhaawon7t4wwf3obn/spack-build-zc2f6fb/src -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/sr | |
| c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J | |
| 796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaaw | |
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| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build | |
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| -build-zc2f6fb/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps | |
| /bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python- | |
| 3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/ | |
| 2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25 | |
| .hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-z | |
| c2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/nrniv/nrniv_lib -I/g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665 | |
| /spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4w | |
| wf3obn/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuron-deve | |
| lop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb/src/ivos | |
| -g -fno-omit-frame-pointer -O1 -fp-model=precise -march=skylake -m | |
| tune=skylake -fPIC -pthread -std=c++17 -MD -MT src/nrniv/CMakeFile | |
| s/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o -MF src/nrniv/CMakeFiles/nr | |
| niv_lib.dir/__/ivoc/ivocmain.cpp.o.d -o src/nrniv/CMakeFiles/nrniv | |
| _lib.dir/__/ivoc/ivocmain.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neur | |
| on-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/ivoc/ivo | |
| cmain.cpp | |
| >> 1193 FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o | |
| 1194 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 62/spack/lib/spack/env/oneapi/icpx -DHAVE_CONFIG_H -DMPICH_SKIP_MP | |
| ICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_ | |
| THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUS | |
| EBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuro | |
| n-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb -I/ | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J79666 | |
| 5/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4 | |
| wwf3obn/spack-build-zc2f6fb/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuro | |
| n-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src -I/gpfs/b | |
| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spac | |
| k-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3ob | |
| n/spack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/git | |
| lab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stag | |
| e-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f | |
| 6fb/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-0 | |
| 2-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6 | |
| l5/include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/ | |
| stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7 | |
| w/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 136739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeay | |
| k22uhaawon7t4wwf3obn/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-buil | |
| d/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spac | |
| k-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P136739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fb | |
| pfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb/src/ivos -g -fno-omi | |
| t-frame-pointer -O1 -fp-model=precise -march=skylake -mtune=skylak | |
| e -fPIC -pthread -std=c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib | |
| .dir/__/ivoc/ivocmain.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/ivocmain.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__ | |
| /ivoc/ivocmain.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop- | |
| zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/ivoc/ivocmain.cpp | |
| 1195 icpx: warning: -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021 | |
| .4.0-q7vl7m/mkl/2021.4.0/lib/intel64: 'linker' input unused [-Wunu | |
| sed-command-line-argument] | |
| 1196 In file included from /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-zc | |
| 2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/ivoc/ivocmain.cpp:37: | |
| >> 1197 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 65/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t | |
| 4wwf3obn/spack-src/src/oc/nrnmpi.h:3:10: fatal error: 'nrnmpiuse.h | |
| ' file not found | |
| 1198 #include "nrnmpiuse.h" | |
| 1199 ^~~~~~~~~~~~~ | |
| 1200 1 error generated. | |
| 1201 [654/2075] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/oneapi/icpx -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_E | |
| XPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build- | |
| zc2f6fb -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P13 | |
| 6739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk2 | |
| 2uhaawon7t4wwf3obn/spack-build-zc2f6fb/src -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/sr | |
| c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J | |
| 796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaaw | |
| on7t4wwf3obn/spack-src/external/Random123/include -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build | |
| /spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack | |
| -build-zc2f6fb/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps | |
| /bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python- | |
| 3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/ | |
| 2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25 | |
| .hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-z | |
| c2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/nrniv/nrniv_lib -I/g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665 | |
| /spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4w | |
| wf3obn/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuron-deve | |
| lop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb/src/ivos | |
| -g -fno-omit-frame-pointer -O1 -fp-model=precise -march=skylake -m | |
| tune=skylake -fPIC -pthread -std=c++17 -MD -MT src/nrniv/CMakeFile | |
| s/nrniv_lib.dir/__/ivoc/graph.cpp.o -MF src/nrniv/CMakeFiles/nrniv | |
| _lib.dir/__/ivoc/graph.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.d | |
| ir/__/ivoc/graph.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb | |
| pcihpcproj12/P136739/J796665/spack-build/spack-stage-neuron-develo | |
| p-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/ivoc/graph.cpp | |
| 1202 icpx: warning: -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021 | |
| .4.0-q7vl7m/mkl/2021.4.0/lib/intel64: 'linker' input unused [-Wunu | |
| sed-command-line-argument] | |
| 1203 [655/2075] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/oneapi/icpx -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_E | |
| XPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build- | |
| zc2f6fb -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P13 | |
| 6739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk2 | |
| 2uhaawon7t4wwf3obn/spack-build-zc2f6fb/src -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/sr | |
| c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J | |
| 796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaaw | |
| on7t4wwf3obn/spack-src/external/Random123/include -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build | |
| /spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack | |
| -build-zc2f6fb/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps | |
| /bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python- | |
| 3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/ | |
| 2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25 | |
| .hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-z | |
| c2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/nrniv/nrniv_lib -I/g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665 | |
| /spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4w | |
| wf3obn/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuron-deve | |
| lop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb/src/ivos | |
| -g -fno-omit-frame-pointer -O1 -fp-model=precise -march=skylake -m | |
| tune=skylake -fPIC -pthread -std=c++17 -MD -MT src/nrniv/CMakeFile | |
| s/nrniv_lib.dir/__/ivoc/ivoc.cpp.o -MF src/nrniv/CMakeFiles/nrniv_ | |
| lib.dir/__/ivoc/ivoc.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/ivoc.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-z | |
| c2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/ivoc/ivoc.cpp | |
| >> 1204 FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o | |
| 1205 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 62/spack/lib/spack/env/oneapi/icpx -DHAVE_CONFIG_H -DMPICH_SKIP_MP | |
| ICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_ | |
| THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUS | |
| EBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuro | |
| n-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb -I/ | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J79666 | |
| 5/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4 | |
| wwf3obn/spack-build-zc2f6fb/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuro | |
| n-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src -I/gpfs/b | |
| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spac | |
| k-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3ob | |
| n/spack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/git | |
| lab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stag | |
| e-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f | |
| 6fb/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-0 | |
| 2-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6 | |
| l5/include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/ | |
| stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7 | |
| w/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 136739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeay | |
| k22uhaawon7t4wwf3obn/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-buil | |
| d/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spac | |
| k-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P136739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fb | |
| pfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb/src/ivos -g -fno-omi | |
| t-frame-pointer -O1 -fp-model=precise -march=skylake -mtune=skylak | |
| e -fPIC -pthread -std=c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib | |
| .dir/__/ivoc/ivoc.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ | |
| ivoc/ivoc.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/iv | |
| oc.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 136739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeay | |
| k22uhaawon7t4wwf3obn/spack-src/src/ivoc/ivoc.cpp | |
| 1206 icpx: warning: -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021 | |
| .4.0-q7vl7m/mkl/2021.4.0/lib/intel64: 'linker' input unused [-Wunu | |
| sed-command-line-argument] | |
| 1207 In file included from /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-zc | |
| 2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/ivoc/ivoc.cpp:10: | |
| 1208 In file included from /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-zc | |
| 2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/oc/ocfunc.h:2: | |
| >> 1209 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 65/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t | |
| 4wwf3obn/spack-src/src/oc/nrnfilewrap.h:3:10: fatal error: 'nrnmpi | |
| use.h' file not found | |
| 1210 #include "nrnmpiuse.h" | |
| 1211 ^~~~~~~~~~~~~ | |
| 1212 1 error generated. | |
| 1213 [656/2075] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/oneapi/icpx -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_E | |
| XPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build- | |
| zc2f6fb -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P13 | |
| 6739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk2 | |
| 2uhaawon7t4wwf3obn/spack-build-zc2f6fb/src -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/sr | |
| c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J | |
| 796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaaw | |
| on7t4wwf3obn/spack-src/external/Random123/include -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build | |
| /spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack | |
| -build-zc2f6fb/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps | |
| /bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python- | |
| 3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/ | |
| 2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25 | |
| .hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-z | |
| c2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/nrniv/nrniv_lib -I/g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665 | |
| /spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4w | |
| wf3obn/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuron-deve | |
| lop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb/src/ivos | |
| -g -fno-omit-frame-pointer -O1 -fp-model=precise -march=skylake -m | |
| tune=skylake -fPIC -pthread -std=c++17 -MD -MT src/nrniv/CMakeFile | |
| s/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o -MF src/nrniv/CMakeFiles/nr | |
| niv_lib.dir/__/ivoc/ivocvect.cpp.o.d -o src/nrniv/CMakeFiles/nrniv | |
| _lib.dir/__/ivoc/ivocvect.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neur | |
| on-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/ivoc/ivo | |
| cvect.cpp | |
| >> 1214 FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o | |
| 1215 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 62/spack/lib/spack/env/oneapi/icpx -DHAVE_CONFIG_H -DMPICH_SKIP_MP | |
| ICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_ | |
| THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUS | |
| EBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuro | |
| n-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb -I/ | |
| gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J79666 | |
| 5/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4 | |
| wwf3obn/spack-build-zc2f6fb/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuro | |
| n-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src -I/gpfs/b | |
| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spac | |
| k-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3ob | |
| n/spack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/git | |
| lab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stag | |
| e-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f | |
| 6fb/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-0 | |
| 2-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6 | |
| l5/include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/ | |
| stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7 | |
| w/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P | |
| 136739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeay | |
| k22uhaawon7t4wwf3obn/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-buil | |
| d/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spac | |
| k-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P136739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fb | |
| pfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb/src/ivos -g -fno-omi | |
| t-frame-pointer -O1 -fp-model=precise -march=skylake -mtune=skylak | |
| e -fPIC -pthread -std=c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib | |
| .dir/__/ivoc/ivocvect.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/ivocvect.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__ | |
| /ivoc/ivocvect.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop- | |
| zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/ivoc/ivocvect.cpp | |
| 1216 icpx: warning: -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021 | |
| .4.0-q7vl7m/mkl/2021.4.0/lib/intel64: 'linker' input unused [-Wunu | |
| sed-command-line-argument] | |
| 1217 In file included from /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-zc | |
| 2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/ivoc/ivocvect.cpp:125 | |
| : | |
| 1218 In file included from /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih | |
| pcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-zc | |
| 2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/oc/ocfunc.h:2: | |
| >> 1219 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 65/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t | |
| 4wwf3obn/spack-src/src/oc/nrnfilewrap.h:3:10: fatal error: 'nrnmpi | |
| use.h' file not found | |
| 1220 #include "nrnmpiuse.h" | |
| 1221 ^~~~~~~~~~~~~ | |
| 1222 1 error generated. | |
| 1223 [657/2075] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/oneapi/icpx -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_E | |
| XPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build- | |
| zc2f6fb -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P13 | |
| 6739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk2 | |
| 2uhaawon7t4wwf3obn/spack-build-zc2f6fb/src -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/sr | |
| c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J | |
| 796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaaw | |
| on7t4wwf3obn/spack-src/external/Random123/include -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build | |
| /spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack | |
| -build-zc2f6fb/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps | |
| /bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python- | |
| 3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/ | |
| 2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25 | |
| .hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-z | |
| c2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/nrniv/nrniv_lib -I/g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665 | |
| /spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4w | |
| wf3obn/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuron-deve | |
| lop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb/src/ivos | |
| -g -fno-omit-frame-pointer -O1 -fp-model=precise -march=skylake -m | |
| tune=skylake -fPIC -pthread -std=c++17 -MD -MT src/nrniv/CMakeFile | |
| s/nrniv_lib.dir/__/ivoc/mlinedit.cpp.o -MF src/nrniv/CMakeFiles/nr | |
| niv_lib.dir/__/ivoc/mlinedit.cpp.o.d -o src/nrniv/CMakeFiles/nrniv | |
| _lib.dir/__/ivoc/mlinedit.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neur | |
| on-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/ivoc/mli | |
| nedit.cpp | |
| 1224 icpx: warning: -Wl,-rpath,/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021 | |
| .4.0-q7vl7m/mkl/2021.4.0/lib/intel64: 'linker' input unused [-Wunu | |
| sed-command-line-argument] | |
| 1225 [658/2075] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/oneapi/icpx -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_E | |
| XPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build- | |
| zc2f6fb -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P13 | |
| 6739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk2 | |
| 2uhaawon7t4wwf3obn/spack-build-zc2f6fb/src -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack- | |
| stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/sr | |
| c -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J | |
| 796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaaw | |
| on7t4wwf3obn/spack-src/external/Random123/include -I/gpfs/bbp.cscs | |
| .ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build | |
| /spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack | |
| -build-zc2f6fb/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps | |
| /bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python- | |
| 3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/ | |
| 2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25 | |
| .hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpci | |
| hpcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-z | |
| c2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/nrniv/nrniv_lib -I/g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665 | |
| /spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4w | |
| wf3obn/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuron-deve | |
| lop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-zc2f6fb/src/ivos | |
| -g -fno-omit-frame-pointer -O1 -fp-model=precise -march=skylake -m | |
| tune=skylake -fPIC -pthread -std=c++17 -MD -MT src/nrniv/CMakeFile | |
| s/nrniv_lib.dir/__/ivoc/ivocrand.cpp.o -MF src/nrniv/CMakeFiles/nr | |
| niv_lib.dir/__/ivoc/ivocrand.cpp.o.d -o src/nrniv/CMakeFiles/nrniv | |
| _lib.dir/__/ivoc/ivocrand.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_ma | |
| p_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neur | |
| on-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-src/src/ivoc/ivo | |
| crand.cpp | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796665/spack-build/spack-stage-neuron-develop-zc2f6fbpfeayk22uhaawon7t4wwf3obn/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r1i6n25: task 0: Exited with exit code 1 | |
| section_end:1688640800:step_script [0Ksection_start:1688640800:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=111235 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=796665 responseStatus[0;m=201 Created token[0;m=64_2457- | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=111277 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=796665 responseStatus[0;m=201 Created token[0;m=64_2457- | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=111319 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=796665 responseStatus[0;m=201 Created token[0;m=64_2457- | |
| section_end:1688640802:upload_artifacts_on_failure [0Ksection_start:1688640802:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1688640803:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1688640515:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1688640515:resolve_secrets [0Ksection_start:1688640515:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor922115326, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 136739, build ref , job ID 796667 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J796667_PROD_P2160_CP3_C6 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1609433 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J796667_PROD_P2160_CP3_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739 --ntasks=2 --jobid=1609433 --cpus-per-task=8 --mem=76G | |
| section_end:1688640517:prepare_executor [0Ksection_start:1688640517:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n26 via bbpv1.epfl.ch... | |
| section_end:1688640521:prepare_script [0Ksection_start:1688640521:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1688640522:get_sources [0Ksection_start:1688640522:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=179280 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1688640528:restore_cache [0Ksection_start:1688640528:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (796664)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=180127 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=796664 responseStatus[0;m=200 OK token[0;m=64_c-Jq_ | |
| section_end:1688640529:download_artifacts [0Ksection_start:1688640529:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739/J796667_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/zlmltvgvaevja4rnq63lrqpowknrsuu3 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1609433/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1609433/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Jul 6 12:48:54 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.45 / 0.51 (87.81 %) | |
| Files: 22722 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| [+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - ky6wwb6 neuron@develop%nvhpc@23.1~caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
| [^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
| [^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
| [^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7pokw4h ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| - dvav7kc ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] einzmbz ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake | |
| [^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] zlmltvg ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] hexz5ps ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739, but it is owned by 0 | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
| [+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| ==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2.0-skylake/libsonata-report-develop-dvav7k | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2.0-skylake/nmodl-develop-zlmltv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml | |
| ==> Installing neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes | |
| ==> No binary for neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 1: | |
| '/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc/bin/ninja' '-j8' '-v' | |
| 7 errors found in build log: | |
| 811 [620/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DCOMPILE_DEFINITION | |
| S -DCVODE=1 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND | |
| =1 -DNMODL=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_DYNAMIC_UNITS=1 -DNR | |
| N_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DR123_USE_INTRIN_H=0 -DUSE_ | |
| PYTHON -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4 | |
| ur3thve7kv5rtjhes/spack-build-ky6wwb6/src/nrniv/nocmodl_generated | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J79 | |
| 6667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve | |
| 7kv5rtjhes/spack-src/src/nmodl -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron | |
| -develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb6 -I/g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667 | |
| /spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5 | |
| rtjhes/spack-build-ky6wwb6/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_ | |
| jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron | |
| -develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/src -I/gpfs/bb | |
| p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack | |
| -build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes | |
| /spack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitl | |
| ab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage | |
| -neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/src/nrn | |
| iv/nrniv_lib -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P136739/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64x | |
| a23dp4ur3thve7kv5rtjhes/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack- | |
| stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build- | |
| ky6wwb6/src/ivos -g -O1 --diag_suppress=1,47,111,128,170,174,177,1 | |
| 80,186,301,541,550,816,941,2465 -noswitcherror -O0 --c++17 -MD -MT | |
| src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o - | |
| MF src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o | |
| .d -o src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cp | |
| p.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P13673 | |
| 9/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur | |
| 3thve7kv5rtjhes/spack-build-ky6wwb6/src/nrniv/nocmodl_generated/pa | |
| rse1.cpp | |
| 812 [621/2529] cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64xa | |
| 23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb6/bin && /gpfs/bbp.cscs.c | |
| h/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skyla | |
| ke/cmake-3.24.3-4blf3d/bin/cmake -E env NMODLHOME= /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/ | |
| spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack- | |
| build-ky6wwb6/bin/nrnivmodl-core -b STATIC -m /gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2 | |
| .0-skylake/nmodl-develop-zlmltv/bin/nmodl -n internal -p 4 . | |
| 813 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron- | |
| develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb6/bin', | |
| compiling default ones only! | |
| 814 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron-deve | |
| lop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb6/share/cor | |
| eneuron/nrnivmodl_core_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_ | |
| map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-ne | |
| uron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb6 | |
| MECHLIB_SUFFIX=internal NMODL_BINARY=/gpfs/bbp.cscs.ch/ssd/gitlab_ | |
| map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2.0-skylak | |
| e/nmodl-develop-zlmltv/bin/nmodl MODS_PATH=x86_64/corenrn/mod2c BU | |
| ILD_TYPE=STATIC NRN_PRCELLSTATE=0 | |
| 815 make: xcrun: Command not found | |
| 816 Default NMODL flags: | |
| >> 817 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 818 [NMODL] [info] :: Processing x86_64/corenrn/mod2c/exp2syn.mod | |
| 819 [NMODL] [info] :: Running symtab visitor | |
| 820 [NMODL] [info] :: Running semantic analysis visitor | |
| 821 [NMODL] [info] :: Running CVode to cnexp visitor | |
| 822 [NMODL] [info] :: Running code compatibility checker | |
| 823 [NMODL] [info] :: Running verbatim rename visitor | |
| ... | |
| 1005 [651/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DR123_USE_INTRIN_H=0 -DUS | |
| E_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7 | |
| kv5rtjhes/spack-build-ky6wwb6 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron- | |
| develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb6/src - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7 | |
| kv5rtjhes/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb | |
| pcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron-develo | |
| p-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/external/Random123/in | |
| clude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1367 | |
| 39/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4u | |
| r3thve7kv5rtjhes/spack-build-ky6wwb6/src/nrniv/oc_generated -I/gpf | |
| s/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc- | |
| 12.2.0-skylake/python-3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp | |
| .cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2. | |
| 0-skylake/hpe-mpi-2.25.hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack- | |
| stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/sr | |
| c/nrniv/nrniv_lib -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796667/spack-build/spack-stage-neuron-develop-ky6w | |
| wb64xa23dp4ur3thve7kv5rtjhes/spack-src/src/ivos -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/s | |
| pack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-b | |
| uild-ky6wwb6/src/ivos -g -O1 -fPIC --diag_suppress=1,47,111,128,17 | |
| 0,174,177,180,186,301,541,550,816,941,2465 -noswitcherror --c++17 | |
| -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grmanip.cpp.o - | |
| MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grmanip.cpp.o.d -o s | |
| rc/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grmanip.cpp.o -c /gpfs/b | |
| bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spac | |
| k-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhe | |
| s/spack-src/src/ivoc/grmanip.cpp | |
| 1006 [652/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DR123_USE_INTRIN_H=0 -DUS | |
| E_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7 | |
| kv5rtjhes/spack-build-ky6wwb6 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron- | |
| develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb6/src - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7 | |
| kv5rtjhes/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb | |
| pcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron-develo | |
| p-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/external/Random123/in | |
| clude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1367 | |
| 39/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4u | |
| r3thve7kv5rtjhes/spack-build-ky6wwb6/src/nrniv/oc_generated -I/gpf | |
| s/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc- | |
| 12.2.0-skylake/python-3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp | |
| .cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2. | |
| 0-skylake/hpe-mpi-2.25.hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack- | |
| stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/sr | |
| c/nrniv/nrniv_lib -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796667/spack-build/spack-stage-neuron-develop-ky6w | |
| wb64xa23dp4ur3thve7kv5rtjhes/spack-src/src/ivos -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/s | |
| pack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-b | |
| uild-ky6wwb6/src/ivos -g -O1 -fPIC --diag_suppress=1,47,111,128,17 | |
| 0,174,177,180,186,301,541,550,816,941,2465 -noswitcherror --c++17 | |
| -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o -M | |
| F src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o.d -o src | |
| /nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o -c /gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-b | |
| uild/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/s | |
| pack-src/src/ivoc/htlist.cpp | |
| 1007 [653/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DR123_USE_INTRIN_H=0 -DUS | |
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| MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/fourier.cpp.o.d -o s | |
| rc/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/fourier.cpp.o -c /gpfs/b | |
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| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DR123_USE_INTRIN_H=0 -DUS | |
| E_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 - | |
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| p-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/external/Random123/in | |
| clude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1367 | |
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| 12.2.0-skylake/python-3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp | |
| .cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2. | |
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| uild-ky6wwb6/src/ivos -g -O1 -fPIC --diag_suppress=1,47,111,128,17 | |
| 0,174,177,180,186,301,541,550,816,941,2465 -noswitcherror --c++17 | |
| -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grglyph.cpp.o - | |
| MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grglyph.cpp.o.d -o s | |
| rc/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grglyph.cpp.o -c /gpfs/b | |
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| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DR123_USE_INTRIN_H=0 -DUS | |
| E_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
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| obs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron- | |
| develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb6/src - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
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| pcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron-develo | |
| p-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/external/Random123/in | |
| clude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1367 | |
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| s/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc- | |
| 12.2.0-skylake/python-3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp | |
| .cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2. | |
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| uild-ky6wwb6/src/ivos -g -O1 -fPIC --diag_suppress=1,47,111,128,17 | |
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| -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/graph.cpp.o -MF | |
| src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/graph.cpp.o.d -o src/n | |
| rniv/CMakeFiles/nrniv_lib.dir/__/ivoc/graph.cpp.o -c /gpfs/bbp.csc | |
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| E_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
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| 667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7 | |
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| pcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron-develo | |
| p-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/external/Random123/in | |
| clude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1367 | |
| 39/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4u | |
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| s/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc- | |
| 12.2.0-skylake/python-3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp | |
| .cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2. | |
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| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack- | |
| stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/sr | |
| c/nrniv/nrniv_lib -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796667/spack-build/spack-stage-neuron-develop-ky6w | |
| wb64xa23dp4ur3thve7kv5rtjhes/spack-src/src/ivos -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/s | |
| pack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-b | |
| uild-ky6wwb6/src/ivos -g -O1 -fPIC --diag_suppress=1,47,111,128,17 | |
| 0,174,177,180,186,301,541,550,816,941,2465 -noswitcherror --c++17 | |
| -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o | |
| -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o.d -o | |
| src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o -c /gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/s | |
| pack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rt | |
| jhes/spack-src/src/ivoc/ivocmain.cpp | |
| >> 1011 FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o | |
| 1012 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 62/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMPICH_SKIP_MP | |
| ICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_ | |
| THREADS -DOMPI_SKIP_MPICXX=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -D | |
| nrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-b | |
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| pack-build-ky6wwb6 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp | |
| cproj12/P136739/J796667/spack-build/spack-stage-neuron-develop-ky6 | |
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| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-b | |
| uild/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/s | |
| pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P136739/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64x | |
| a23dp4ur3thve7kv5rtjhes/spack-src/external/Random123/include -I/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/ | |
| spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5r | |
| tjhes/spack-build-ky6wwb6/src/nrniv/oc_generated -I/gpfs/bbp.cscs. | |
| ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skyl | |
| ake/python-3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp.cscs.ch/ss | |
| d/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/h | |
| pe-mpi-2.25.hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-neuro | |
| n-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/src/nrniv/nrn | |
| iv_lib -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4 | |
| ur3thve7kv5rtjhes/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage- | |
| neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb | |
| 6/src/ivos -g -O1 -fPIC --diag_suppress=1,47,111,128,170,174,177,1 | |
| 80,186,301,541,550,816,941,2465 -noswitcherror --c++17 -MD -MT src | |
| /nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o -MF src/nrn | |
| iv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o.d -o src/nrniv/ | |
| CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o -c /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/ | |
| spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack- | |
| src/src/ivoc/ivocmain.cpp | |
| >> 1013 "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7 | |
| kv5rtjhes/spack-src/src/oc/nrnmpi.h", line 3: catastrophic error: | |
| cannot open source file "nrnmpiuse.h" | |
| 1014 #include "nrnmpiuse.h" | |
| 1015 ^ | |
| 1016 | |
| 1017 1 catastrophic error detected in the compilation of "/gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-buil | |
| d/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spac | |
| k-src/src/ivoc/ivocmain.cpp". | |
| 1018 Compilation terminated. | |
| 1019 [657/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DR123_USE_INTRIN_H=0 -DUS | |
| E_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7 | |
| kv5rtjhes/spack-build-ky6wwb6 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron- | |
| develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb6/src - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7 | |
| kv5rtjhes/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb | |
| pcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron-develo | |
| p-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/external/Random123/in | |
| clude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1367 | |
| 39/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4u | |
| r3thve7kv5rtjhes/spack-build-ky6wwb6/src/nrniv/oc_generated -I/gpf | |
| s/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc- | |
| 12.2.0-skylake/python-3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp | |
| .cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2. | |
| 0-skylake/hpe-mpi-2.25.hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack- | |
| stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/sr | |
| c/nrniv/nrniv_lib -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796667/spack-build/spack-stage-neuron-develop-ky6w | |
| wb64xa23dp4ur3thve7kv5rtjhes/spack-src/src/ivos -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/s | |
| pack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-b | |
| uild-ky6wwb6/src/ivos -g -O1 -fPIC --diag_suppress=1,47,111,128,17 | |
| 0,174,177,180,186,301,541,550,816,941,2465 -noswitcherror --c++17 | |
| -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o -MF | |
| src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o.d -o src/nrn | |
| iv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o -c /gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/s | |
| pack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-s | |
| rc/src/ivoc/ivoc.cpp | |
| >> 1020 FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o | |
| 1021 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 62/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMPICH_SKIP_MP | |
| ICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_ | |
| THREADS -DOMPI_SKIP_MPICXX=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -D | |
| nrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-b | |
| uild/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/s | |
| pack-build-ky6wwb6 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp | |
| cproj12/P136739/J796667/spack-build/spack-stage-neuron-develop-ky6 | |
| wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb6/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-b | |
| uild/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/s | |
| pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P136739/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64x | |
| a23dp4ur3thve7kv5rtjhes/spack-src/external/Random123/include -I/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/ | |
| spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5r | |
| tjhes/spack-build-ky6wwb6/src/nrniv/oc_generated -I/gpfs/bbp.cscs. | |
| ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skyl | |
| ake/python-3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp.cscs.ch/ss | |
| d/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/h | |
| pe-mpi-2.25.hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-neuro | |
| n-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/src/nrniv/nrn | |
| iv_lib -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4 | |
| ur3thve7kv5rtjhes/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage- | |
| neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb | |
| 6/src/ivos -g -O1 -fPIC --diag_suppress=1,47,111,128,170,174,177,1 | |
| 80,186,301,541,550,816,941,2465 -noswitcherror --c++17 -MD -MT src | |
| /nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o -MF src/nrniv/C | |
| MakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o.d -o src/nrniv/CMakeFil | |
| es/nrniv_lib.dir/__/ivoc/ivoc.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage- | |
| neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/src/ivoc | |
| /ivoc.cpp | |
| >> 1022 "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7 | |
| kv5rtjhes/spack-src/src/oc/nrnfilewrap.h", line 3: catastrophic er | |
| ror: cannot open source file "nrnmpiuse.h" | |
| 1023 #include "nrnmpiuse.h" | |
| 1024 ^ | |
| 1025 | |
| 1026 1 catastrophic error detected in the compilation of "/gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-buil | |
| d/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spac | |
| k-src/src/ivoc/ivoc.cpp". | |
| 1027 Compilation terminated. | |
| 1028 [658/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DR123_USE_INTRIN_H=0 -DUS | |
| E_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7 | |
| kv5rtjhes/spack-build-ky6wwb6 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron- | |
| develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb6/src - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7 | |
| kv5rtjhes/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb | |
| pcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron-develo | |
| p-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/external/Random123/in | |
| clude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1367 | |
| 39/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4u | |
| r3thve7kv5rtjhes/spack-build-ky6wwb6/src/nrniv/oc_generated -I/gpf | |
| s/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc- | |
| 12.2.0-skylake/python-3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp | |
| .cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2. | |
| 0-skylake/hpe-mpi-2.25.hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack- | |
| stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/sr | |
| c/nrniv/nrniv_lib -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796667/spack-build/spack-stage-neuron-develop-ky6w | |
| wb64xa23dp4ur3thve7kv5rtjhes/spack-src/src/ivos -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/s | |
| pack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-b | |
| uild-ky6wwb6/src/ivos -g -O1 -fPIC --diag_suppress=1,47,111,128,17 | |
| 0,174,177,180,186,301,541,550,816,941,2465 -noswitcherror --c++17 | |
| -O1 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cp | |
| p.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o. | |
| d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o -c | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 67/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7k | |
| v5rtjhes/spack-src/src/ivoc/ivocvect.cpp | |
| >> 1029 FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o | |
| 1030 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 62/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMPICH_SKIP_MP | |
| ICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_ | |
| THREADS -DOMPI_SKIP_MPICXX=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -D | |
| nrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-b | |
| uild/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/s | |
| pack-build-ky6wwb6 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihp | |
| cproj12/P136739/J796667/spack-build/spack-stage-neuron-develop-ky6 | |
| wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb6/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-b | |
| uild/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/s | |
| pack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1 | |
| 2/P136739/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64x | |
| a23dp4ur3thve7kv5rtjhes/spack-src/external/Random123/include -I/gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/ | |
| spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5r | |
| tjhes/spack-build-ky6wwb6/src/nrniv/oc_generated -I/gpfs/bbp.cscs. | |
| ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skyl | |
| ake/python-3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp.cscs.ch/ss | |
| d/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/h | |
| pe-mpi-2.25.hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map | |
| _jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-neuro | |
| n-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/src/nrniv/nrn | |
| iv_lib -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4 | |
| ur3thve7kv5rtjhes/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage- | |
| neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb | |
| 6/src/ivos -g -O1 -fPIC --diag_suppress=1,47,111,128,170,174,177,1 | |
| 80,186,301,541,550,816,941,2465 -noswitcherror --c++17 -O1 -MD -MT | |
| src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o -MF src | |
| /nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o.d -o src/nr | |
| niv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o -c /gpfs/bbp.c | |
| scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-bu | |
| ild/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/sp | |
| ack-src/src/ivoc/ivocvect.cpp | |
| >> 1031 "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7 | |
| kv5rtjhes/spack-src/src/oc/nrnfilewrap.h", line 3: catastrophic er | |
| ror: cannot open source file "nrnmpiuse.h" | |
| 1032 #include "nrnmpiuse.h" | |
| 1033 ^ | |
| 1034 | |
| 1035 1 catastrophic error detected in the compilation of "/gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-buil | |
| d/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spac | |
| k-src/src/ivoc/ivocvect.cpp". | |
| 1036 Compilation terminated. | |
| 1037 [659/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DR123_USE_INTRIN_H=0 -DUS | |
| E_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7 | |
| kv5rtjhes/spack-build-ky6wwb6 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron- | |
| develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-ky6wwb6/src - | |
| I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7 | |
| kv5rtjhes/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bb | |
| pcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron-develo | |
| p-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/external/Random123/in | |
| clude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1367 | |
| 39/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4u | |
| r3thve7kv5rtjhes/spack-build-ky6wwb6/src/nrniv/oc_generated -I/gpf | |
| s/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc- | |
| 12.2.0-skylake/python-3.10.8-rvn6l5/include/python3.10 -I/gpfs/bbp | |
| .cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2. | |
| 0-skylake/hpe-mpi-2.25.hmpt-mgws7w/include -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack- | |
| stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-src/sr | |
| c/nrniv/nrniv_lib -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796667/spack-build/spack-stage-neuron-develop-ky6w | |
| wb64xa23dp4ur3thve7kv5rtjhes/spack-src/src/ivos -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/s | |
| pack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-b | |
| uild-ky6wwb6/src/ivos -g -O1 -fPIC --diag_suppress=1,47,111,128,17 | |
| 0,174,177,180,186,301,541,550,816,941,2465 -noswitcherror --c++17 | |
| -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocrand.cpp.o | |
| -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocrand.cpp.o.d -o | |
| src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocrand.cpp.o -c /gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/s | |
| pack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rt | |
| jhes/spack-src/src/ivoc/ivocrand.cpp | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796667/spack-build/spack-stage-neuron-develop-ky6wwb64xa23dp4ur3thve7kv5rtjhes/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r1i7n26: task 0: Exited with exit code 1 | |
| section_end:1688641123:step_script [0Ksection_start:1688641123:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=205313 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=796667 responseStatus[0;m=201 Created token[0;m=64_c-Jq_ | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=205368 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=796667 responseStatus[0;m=201 Created token[0;m=64_c-Jq_ | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=205413 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=796667 responseStatus[0;m=201 Created token[0;m=64_c-Jq_ | |
| section_end:1688641125:upload_artifacts_on_failure [0Ksection_start:1688641125:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1688641126:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1688640516:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1688640516:resolve_secrets [0Ksection_start:1688640516:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1159469246, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 136739, build ref , job ID 796669 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J796669_PROD_P2160_CP5_C8 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1609435 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J796669_PROD_P2160_CP5_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739 --ntasks=2 --jobid=1609435 --cpus-per-task=8 --mem=76G | |
| section_end:1688640519:prepare_executor [0Ksection_start:1688640519:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i7n26 via bbpv1.epfl.ch... | |
| section_end:1688640525:prepare_script [0Ksection_start:1688640525:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1688640525:get_sources [0Ksection_start:1688640525:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=179906 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1688640532:restore_cache [0Ksection_start:1688640532:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (796664)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=181334 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=796664 responseStatus[0;m=200 OK token[0;m=64_PKrBM | |
| section_end:1688640533:download_artifacts [0Ksection_start:1688640533:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739/J796669_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/zlmltvgvaevja4rnq63lrqpowknrsuu3 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1609435/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1609435/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Jul 6 12:48:57 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.46 / 0.51 (90.57 %) | |
| Files: 23452 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^caliper+cuda cuda_arch=70 | |
| [+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - ihzwd43 neuron@develop%nvhpc@23.1+caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [^] c3723hn ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] pcfmpqe ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7yt5klx ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake | |
| [^] zttduab ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake | |
| [^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
| [^] ja6blio ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] 3gsobub ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
| [^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
| [^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7pokw4h ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| - dvav7kc ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] einzmbz ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake | |
| [^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] zlmltvg ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] hexz5ps ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
| [+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
| [+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| ==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-pcfmpq | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-c3723h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2.0-skylake/nmodl-develop-zlmltv | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2.0-skylake/libsonata-report-develop-dvav7k | |
| ==> Installing neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob | |
| ==> No binary for neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 1: | |
| '/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc/bin/ninja' '-j8' '-v' | |
| 7 errors found in build log: | |
| 875 Notice: LINEAR is not thread safe. | |
| 876 [640/2529] cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2j | |
| rehd4lbg4ctmov64dajrob/spack-build-ihzwd43/bin && /gpfs/bbp.cscs.c | |
| h/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skyla | |
| ke/cmake-3.24.3-4blf3d/bin/cmake -E env NMODLHOME= /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/ | |
| spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack- | |
| build-ihzwd43/bin/nrnivmodl-core -b STATIC -m /gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2 | |
| .0-skylake/nmodl-develop-zlmltv/bin/nmodl -n internal -p 4 . | |
| 877 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron- | |
| develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43/bin', | |
| compiling default ones only! | |
| 878 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-deve | |
| lop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43/share/cor | |
| eneuron/nrnivmodl_core_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_ | |
| map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-ne | |
| uron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 | |
| MECHLIB_SUFFIX=internal NMODL_BINARY=/gpfs/bbp.cscs.ch/ssd/gitlab_ | |
| map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2.0-skylak | |
| e/nmodl-develop-zlmltv/bin/nmodl MODS_PATH=x86_64/corenrn/mod2c BU | |
| ILD_TYPE=STATIC NRN_PRCELLSTATE=0 | |
| 879 make: xcrun: Command not found | |
| 880 Default NMODL flags: | |
| >> 881 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 882 [NMODL] [info] :: Processing x86_64/corenrn/mod2c/exp2syn.mod | |
| 883 [NMODL] [info] :: Running symtab visitor | |
| 884 [NMODL] [info] :: Running semantic analysis visitor | |
| 885 [NMODL] [info] :: Running CVode to cnexp visitor | |
| 886 [NMODL] [info] :: Running code compatibility checker | |
| 887 [NMODL] [info] :: Running verbatim rename visitor | |
| ... | |
| 1008 [651/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_CALIPER -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICX | |
| X=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBB | |
| S=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/s | |
| pack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64da | |
| jrob/spack-build-ihzwd43/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-b | |
| uild/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/s | |
| pack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-n | |
| euron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 | |
| /src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/ | |
| include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/sta | |
| ge_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/i | |
| nclude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4 | |
| lbg4ctmov64dajrob/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/s | |
| pack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-s | |
| rc/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2j | |
| rehd4lbg4ctmov64dajrob/spack-build-ihzwd43/src/ivos -isystem /gpfs | |
| /bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gc | |
| c-12.2.0-skylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_ | |
| suppress=1,47,111,128,170,174,177,180,186,301,541,550,816,941,2465 | |
| -noswitcherror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/grmanip.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/i | |
| voc/grmanip.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ | |
| grmanip.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43 | |
| s2jrehd4lbg4ctmov64dajrob/spack-src/src/ivoc/grmanip.cpp | |
| 1009 [652/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_CALIPER -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICX | |
| X=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBB | |
| S=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/s | |
| pack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64da | |
| jrob/spack-build-ihzwd43/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-b | |
| uild/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/s | |
| pack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-n | |
| euron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 | |
| /src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/ | |
| include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/sta | |
| ge_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/i | |
| nclude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4 | |
| lbg4ctmov64dajrob/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/s | |
| pack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-s | |
| rc/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2j | |
| rehd4lbg4ctmov64dajrob/spack-build-ihzwd43/src/ivos -isystem /gpfs | |
| /bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gc | |
| c-12.2.0-skylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_ | |
| suppress=1,47,111,128,170,174,177,180,186,301,541,550,816,941,2465 | |
| -noswitcherror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/idraw.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivo | |
| c/idraw.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/idra | |
| w.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jreh | |
| d4lbg4ctmov64dajrob/spack-src/src/ivoc/idraw.cpp | |
| 1010 [653/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_CALIPER -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICX | |
| X=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBB | |
| S=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/s | |
| pack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64da | |
| jrob/spack-build-ihzwd43/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-b | |
| uild/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/s | |
| pack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-n | |
| euron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 | |
| /src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/ | |
| include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/sta | |
| ge_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/i | |
| nclude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4 | |
| lbg4ctmov64dajrob/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/s | |
| pack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-s | |
| rc/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2j | |
| rehd4lbg4ctmov64dajrob/spack-build-ihzwd43/src/ivos -isystem /gpfs | |
| /bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gc | |
| c-12.2.0-skylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_ | |
| suppress=1,47,111,128,170,174,177,180,186,301,541,550,816,941,2465 | |
| -noswitcherror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/fourier.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/i | |
| voc/fourier.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ | |
| fourier.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43 | |
| s2jrehd4lbg4ctmov64dajrob/spack-src/src/ivoc/fourier.cpp | |
| 1011 [654/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_CALIPER -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICX | |
| X=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBB | |
| S=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/s | |
| pack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64da | |
| jrob/spack-build-ihzwd43/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-b | |
| uild/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/s | |
| pack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-n | |
| euron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 | |
| /src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/ | |
| include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/sta | |
| ge_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/i | |
| nclude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4 | |
| lbg4ctmov64dajrob/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/s | |
| pack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-s | |
| rc/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2j | |
| rehd4lbg4ctmov64dajrob/spack-build-ihzwd43/src/ivos -isystem /gpfs | |
| /bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gc | |
| c-12.2.0-skylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_ | |
| suppress=1,47,111,128,170,174,177,180,186,301,541,550,816,941,2465 | |
| -noswitcherror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/grglyph.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/i | |
| voc/grglyph.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ | |
| grglyph.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro | |
| j12/P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43 | |
| s2jrehd4lbg4ctmov64dajrob/spack-src/src/ivoc/grglyph.cpp | |
| 1012 [655/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_CALIPER -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICX | |
| X=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBB | |
| S=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/s | |
| pack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64da | |
| jrob/spack-build-ihzwd43/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-b | |
| uild/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/s | |
| pack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-n | |
| euron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 | |
| /src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/ | |
| include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/sta | |
| ge_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/i | |
| nclude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4 | |
| lbg4ctmov64dajrob/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/s | |
| pack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-s | |
| rc/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2j | |
| rehd4lbg4ctmov64dajrob/spack-build-ihzwd43/src/ivos -isystem /gpfs | |
| /bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gc | |
| c-12.2.0-skylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_ | |
| suppress=1,47,111,128,170,174,177,180,186,301,541,550,816,941,2465 | |
| -noswitcherror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/graph.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivo | |
| c/graph.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grap | |
| h.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jreh | |
| d4lbg4ctmov64dajrob/spack-src/src/ivoc/graph.cpp | |
| 1013 [656/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_CALIPER -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICX | |
| X=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBB | |
| S=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/s | |
| pack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64da | |
| jrob/spack-build-ihzwd43/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-b | |
| uild/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/s | |
| pack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-n | |
| euron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 | |
| /src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/ | |
| include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/sta | |
| ge_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/i | |
| nclude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4 | |
| lbg4ctmov64dajrob/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/s | |
| pack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-s | |
| rc/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2j | |
| rehd4lbg4ctmov64dajrob/spack-build-ihzwd43/src/ivos -isystem /gpfs | |
| /bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gc | |
| c-12.2.0-skylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_ | |
| suppress=1,47,111,128,170,174,177,180,186,301,541,550,816,941,2465 | |
| -noswitcherror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/ivocmain.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ | |
| ivoc/ivocmain.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivo | |
| c/ivocmain.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796669/spack-build/spack-stage-neuron-develop-ihzw | |
| d43s2jrehd4lbg4ctmov64dajrob/spack-src/src/ivoc/ivocmain.cpp | |
| >> 1014 FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o | |
| 1015 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 62/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMPICH_SKIP_MP | |
| ICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER | |
| -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DR123_ | |
| USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGN | |
| U=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796669/spack-build/spack-stage-neuron-develop-ihzw | |
| d43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 -I/gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/ | |
| spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack- | |
| build-ihzwd43/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796669/spack-build/spack-stage-neuron-develop-ihzw | |
| d43s2jrehd4lbg4ctmov64dajrob/spack-src/src -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack- | |
| stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/ex | |
| ternal/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b | |
| bpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-devel | |
| op-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43/src/nrniv/ | |
| oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_ext | |
| ernals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/include/pyt | |
| hon3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_external | |
| s/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/include -I/g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669 | |
| /spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64 | |
| dajrob/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage- | |
| neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/src/ivos | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7 | |
| 96669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ct | |
| mov64dajrob/spack-build-ihzwd43/src/ivos -isystem /gpfs/bbp.cscs.c | |
| h/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-sk | |
| ylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_suppress=1, | |
| 47,111,128,170,174,177,180,186,301,541,550,816,941,2465 -noswitche | |
| rror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/iv | |
| ocmain.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocma | |
| in.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain. | |
| cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4 | |
| lbg4ctmov64dajrob/spack-src/src/ivoc/ivocmain.cpp | |
| >> 1016 "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmo | |
| v64dajrob/spack-src/src/oc/nrnmpi.h", line 3: catastrophic error: | |
| cannot open source file "nrnmpiuse.h" | |
| 1017 #include "nrnmpiuse.h" | |
| 1018 ^ | |
| 1019 | |
| 1020 1 catastrophic error detected in the compilation of "/gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-buil | |
| d/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spac | |
| k-src/src/ivoc/ivocmain.cpp". | |
| 1021 Compilation terminated. | |
| 1022 [657/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_CALIPER -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICX | |
| X=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBB | |
| S=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/s | |
| pack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64da | |
| jrob/spack-build-ihzwd43/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-b | |
| uild/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/s | |
| pack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-n | |
| euron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 | |
| /src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/ | |
| include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/sta | |
| ge_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/i | |
| nclude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4 | |
| lbg4ctmov64dajrob/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/s | |
| pack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-s | |
| rc/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2j | |
| rehd4lbg4ctmov64dajrob/spack-build-ihzwd43/src/ivos -isystem /gpfs | |
| /bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gc | |
| c-12.2.0-skylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_ | |
| suppress=1,47,111,128,170,174,177,180,186,301,541,550,816,941,2465 | |
| -noswitcherror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/ivoc.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc | |
| /ivoc.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.c | |
| pp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1367 | |
| 39/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4l | |
| bg4ctmov64dajrob/spack-src/src/ivoc/ivoc.cpp | |
| >> 1023 FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o | |
| 1024 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 62/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMPICH_SKIP_MP | |
| ICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER | |
| -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DR123_ | |
| USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGN | |
| U=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796669/spack-build/spack-stage-neuron-develop-ihzw | |
| d43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 -I/gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/ | |
| spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack- | |
| build-ihzwd43/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796669/spack-build/spack-stage-neuron-develop-ihzw | |
| d43s2jrehd4lbg4ctmov64dajrob/spack-src/src -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack- | |
| stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/ex | |
| ternal/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b | |
| bpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-devel | |
| op-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43/src/nrniv/ | |
| oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_ext | |
| ernals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/include/pyt | |
| hon3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_external | |
| s/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/include -I/g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669 | |
| /spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64 | |
| dajrob/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage- | |
| neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/src/ivos | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7 | |
| 96669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ct | |
| mov64dajrob/spack-build-ihzwd43/src/ivos -isystem /gpfs/bbp.cscs.c | |
| h/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-sk | |
| ylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_suppress=1, | |
| 47,111,128,170,174,177,180,186,301,541,550,816,941,2465 -noswitche | |
| rror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/iv | |
| oc.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o | |
| .d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o -c /gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/ | |
| spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64d | |
| ajrob/spack-src/src/ivoc/ivoc.cpp | |
| >> 1025 "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmo | |
| v64dajrob/spack-src/src/oc/nrnfilewrap.h", line 3: catastrophic er | |
| ror: cannot open source file "nrnmpiuse.h" | |
| 1026 #include "nrnmpiuse.h" | |
| 1027 ^ | |
| 1028 | |
| 1029 1 catastrophic error detected in the compilation of "/gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-buil | |
| d/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spac | |
| k-src/src/ivoc/ivoc.cpp". | |
| 1030 Compilation terminated. | |
| 1031 [658/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_CALIPER -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICX | |
| X=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBB | |
| S=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/s | |
| pack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64da | |
| jrob/spack-build-ihzwd43/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-b | |
| uild/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/s | |
| pack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-n | |
| euron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 | |
| /src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/ | |
| include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/sta | |
| ge_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/i | |
| nclude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4 | |
| lbg4ctmov64dajrob/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/s | |
| pack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-s | |
| rc/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2j | |
| rehd4lbg4ctmov64dajrob/spack-build-ihzwd43/src/ivos -isystem /gpfs | |
| /bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gc | |
| c-12.2.0-skylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_ | |
| suppress=1,47,111,128,170,174,177,180,186,301,541,550,816,941,2465 | |
| -noswitcherror --c++17 -O1 -MD -MT src/nrniv/CMakeFiles/nrniv_lib | |
| .dir/__/ivoc/ivocvect.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/ivocvect.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__ | |
| /ivoc/ivocvect.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-develop- | |
| ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/src/ivoc/ivocvect.cpp | |
| >> 1032 FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o | |
| 1033 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 62/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMPICH_SKIP_MP | |
| ICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER | |
| -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DR123_ | |
| USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGN | |
| U=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796669/spack-build/spack-stage-neuron-develop-ihzw | |
| d43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 -I/gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/ | |
| spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack- | |
| build-ihzwd43/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796669/spack-build/spack-stage-neuron-develop-ihzw | |
| d43s2jrehd4lbg4ctmov64dajrob/spack-src/src -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack- | |
| stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/ex | |
| ternal/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b | |
| bpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-devel | |
| op-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43/src/nrniv/ | |
| oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_ext | |
| ernals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/include/pyt | |
| hon3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_external | |
| s/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/include -I/g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669 | |
| /spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64 | |
| dajrob/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage- | |
| neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/src/ivos | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7 | |
| 96669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ct | |
| mov64dajrob/spack-build-ihzwd43/src/ivos -isystem /gpfs/bbp.cscs.c | |
| h/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-sk | |
| ylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_suppress=1, | |
| 47,111,128,170,174,177,180,186,301,541,550,816,941,2465 -noswitche | |
| rror --c++17 -O1 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivo | |
| c/ivocvect.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/iv | |
| ocvect.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocv | |
| ect.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/ | |
| P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jr | |
| ehd4lbg4ctmov64dajrob/spack-src/src/ivoc/ivocvect.cpp | |
| >> 1034 "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmo | |
| v64dajrob/spack-src/src/oc/nrnfilewrap.h", line 3: catastrophic er | |
| ror: cannot open source file "nrnmpiuse.h" | |
| 1035 #include "nrnmpiuse.h" | |
| 1036 ^ | |
| 1037 | |
| 1038 1 catastrophic error detected in the compilation of "/gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-buil | |
| d/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spac | |
| k-src/src/ivoc/ivocvect.cpp". | |
| 1039 Compilation terminated. | |
| 1040 [659/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_CALIPER -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICX | |
| X=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBB | |
| S=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/s | |
| pack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64da | |
| jrob/spack-build-ihzwd43/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-d | |
| evelop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-src/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-b | |
| uild/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/s | |
| pack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-n | |
| euron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-ihzwd43 | |
| /src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/ | |
| include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/sta | |
| ge_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/i | |
| nclude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4 | |
| lbg4ctmov64dajrob/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/s | |
| pack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-s | |
| rc/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2j | |
| rehd4lbg4ctmov64dajrob/spack-build-ihzwd43/src/ivos -isystem /gpfs | |
| /bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gc | |
| c-12.2.0-skylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_ | |
| suppress=1,47,111,128,170,174,177,180,186,301,541,550,816,941,2465 | |
| -noswitcherror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/ivocrand.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ | |
| ivoc/ivocrand.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivo | |
| c/ivocrand.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796669/spack-build/spack-stage-neuron-develop-ihzw | |
| d43s2jrehd4lbg4ctmov64dajrob/spack-src/src/ivoc/ivocrand.cpp | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796669/spack-build/spack-stage-neuron-develop-ihzwd43s2jrehd4lbg4ctmov64dajrob/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r1i7n26: task 0: Exited with exit code 1 | |
| section_end:1688641139:step_script [0Ksection_start:1688641139:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=207303 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=796669 responseStatus[0;m=201 Created token[0;m=64_PKrBM | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=207373 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=796669 responseStatus[0;m=201 Created token[0;m=64_PKrBM | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=207414 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=796669 responseStatus[0;m=201 Created token[0;m=64_PKrBM | |
| section_end:1688641141:upload_artifacts_on_failure [0Ksection_start:1688641141:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1688641142:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1688640517:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1688640517:resolve_secrets [0Ksection_start:1688640517:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor4288087186, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 136739, build ref , job ID 796670 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J796670_PROD_P2160_CP6_C9 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1609436 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J796670_PROD_P2160_CP6_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739 --ntasks=2 --jobid=1609436 --cpus-per-task=8 --mem=76G | |
| section_end:1688640519:prepare_executor [0Ksection_start:1688640519:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r2i0n8 via bbpv1.epfl.ch... | |
| section_end:1688640521:prepare_script [0Ksection_start:1688640521:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1688640522:get_sources [0Ksection_start:1688640522:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=239172 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1688640528:restore_cache [0Ksection_start:1688640528:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (796664)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=239282 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=796664 responseStatus[0;m=200 OK token[0;m=64_wKRub | |
| section_end:1688640529:download_artifacts [0Ksection_start:1688640529:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739/J796670_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/zlmltvgvaevja4rnq63lrqpowknrsuu3 | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1609436/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1609436/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Jul 6 12:48:53 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.45 / 0.51 (88.51 %) | |
| Files: 22831 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^caliper+cuda cuda_arch=70 | |
| [+] ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| Concretized | |
| -------------------------------- | |
| - 5ecrp6i neuron@develop%nvhpc@23.1+caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3gsnkau ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [^] c3723hn ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake | |
| [^] pcfmpqe ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7yt5klx ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake | |
| [^] zttduab ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake | |
| [^] ogdpwov ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake | |
| [^] ja6blio ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] 3gsobub ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] ajstvdu ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] xztjuru ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] ms32l57 ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] 455jiaa ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] sktzpiy ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake | |
| [^] q4mt2xu ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 3mknztm ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake | |
| [^] qy7gxuh ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7pokw4h ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| - dvav7kc ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] einzmbz ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake | |
| [^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] kjtivgw ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [+] zlmltvg ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] hexz5ps ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ly6cmfc ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [^] fnkrysr ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tm6pmld ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6pjz7mt ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] ht7d3fj ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td) | |
| [+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj) | |
| [+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| ==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-pcfmpq | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-c3723h | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2.0-skylake/nmodl-develop-zlmltv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2.0-skylake/libsonata-report-develop-dvav7k | |
| ==> Installing neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw | |
| ==> No binary for neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> Error: ProcessError: Command exited with status 1: | |
| '/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc/bin/ninja' '-j8' '-v' | |
| 7 errors found in build log: | |
| 875 Notice: LINEAR is not thread safe. | |
| 876 [640/2529] cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796670/spack-build/spack-stage-neuron-develop-5ecrp6ivwo | |
| snnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i/bin && /gpfs/bbp.cscs.c | |
| h/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skyla | |
| ke/cmake-3.24.3-4blf3d/bin/cmake -E env NMODLHOME= /gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/ | |
| spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack- | |
| build-5ecrp6i/bin/nrnivmodl-core -b STATIC -m /gpfs/bbp.cscs.ch/ss | |
| d/gitlab_map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2 | |
| .0-skylake/nmodl-develop-zlmltv/bin/nmodl -n internal -p 4 . | |
| 877 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j | |
| obs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-neuron- | |
| develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i/bin', | |
| compiling default ones only! | |
| 878 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/ | |
| bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-neuron-deve | |
| lop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i/share/cor | |
| eneuron/nrnivmodl_core_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_ | |
| map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-ne | |
| uron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i | |
| MECHLIB_SUFFIX=internal NMODL_BINARY=/gpfs/bbp.cscs.ch/ssd/gitlab_ | |
| map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2.0-skylak | |
| e/nmodl-develop-zlmltv/bin/nmodl MODS_PATH=x86_64/corenrn/mod2c BU | |
| ILD_TYPE=STATIC NRN_PRCELLSTATE=0 | |
| 879 make: xcrun: Command not found | |
| 880 Default NMODL flags: | |
| >> 881 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director | |
| y | |
| 882 [NMODL] [info] :: Processing x86_64/corenrn/mod2c/expsyn.mod | |
| 883 [NMODL] [info] :: Running symtab visitor | |
| 884 [NMODL] [info] :: Running semantic analysis visitor | |
| 885 [NMODL] [info] :: Running CVode to cnexp visitor | |
| 886 [NMODL] [info] :: Running code compatibility checker | |
| 887 [NMODL] [info] :: Running verbatim rename visitor | |
| ... | |
| 1019 [651/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_CALIPER -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICX | |
| X=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBB | |
| S=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-neuron-d | |
| evelop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/s | |
| pack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6 | |
| pgxw/spack-build-5ecrp6i/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-neuron-d | |
| evelop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-b | |
| uild/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/s | |
| pack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-n | |
| euron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i | |
| /src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/ | |
| include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/sta | |
| ge_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/i | |
| nclude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796670/spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4 | |
| y2wi3sixuskv6pgxw/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/s | |
| pack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-s | |
| rc/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
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| /bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gc | |
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| suppress=1,47,111,128,170,174,177,180,186,301,541,550,816,941,2465 | |
| -noswitcherror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/ivocmain.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ | |
| ivoc/ivocmain.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivo | |
| c/ivocmain.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796670/spack-build/spack-stage-neuron-develop-5ecr | |
| p6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/src/ivoc/ivocmain.cpp | |
| >> 1025 FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o | |
| 1026 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 62/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMPICH_SKIP_MP | |
| ICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER | |
| -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DR123_ | |
| USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGN | |
| U=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796670/spack-build/spack-stage-neuron-develop-5ecr | |
| p6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i -I/gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/ | |
| spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack- | |
| build-5ecrp6i/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796670/spack-build/spack-stage-neuron-develop-5ecr | |
| p6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/src -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/spack- | |
| stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/ex | |
| ternal/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b | |
| bpcihpcproj12/P136739/J796670/spack-build/spack-stage-neuron-devel | |
| op-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i/src/nrniv/ | |
| oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_ext | |
| ernals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/include/pyt | |
| hon3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_external | |
| s/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/include -I/g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670 | |
| /spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixusk | |
| v6pgxw/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage- | |
| neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/src/ivos | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7 | |
| 96670/spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3s | |
| ixuskv6pgxw/spack-build-5ecrp6i/src/ivos -isystem /gpfs/bbp.cscs.c | |
| h/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-sk | |
| ylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_suppress=1, | |
| 47,111,128,170,174,177,180,186,301,541,550,816,941,2465 -noswitche | |
| rror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/iv | |
| ocmain.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocma | |
| in.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain. | |
| cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796670/spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4 | |
| y2wi3sixuskv6pgxw/spack-src/src/ivoc/ivocmain.cpp | |
| >> 1027 "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 670/spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3six | |
| uskv6pgxw/spack-src/src/oc/nrnmpi.h", line 3: catastrophic error: | |
| cannot open source file "nrnmpiuse.h" | |
| 1028 #include "nrnmpiuse.h" | |
| 1029 ^ | |
| 1030 | |
| 1031 1 catastrophic error detected in the compilation of "/gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-buil | |
| d/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spac | |
| k-src/src/ivoc/ivocmain.cpp". | |
| 1032 Compilation terminated. | |
| 1033 [657/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_CALIPER -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICX | |
| X=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBB | |
| S=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-neuron-d | |
| evelop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/s | |
| pack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6 | |
| pgxw/spack-build-5ecrp6i/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-neuron-d | |
| evelop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-b | |
| uild/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/s | |
| pack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-n | |
| euron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i | |
| /src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/ | |
| include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/sta | |
| ge_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/i | |
| nclude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796670/spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4 | |
| y2wi3sixuskv6pgxw/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/s | |
| pack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-s | |
| rc/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796670/spack-build/spack-stage-neuron-develop-5ecrp6ivwo | |
| snnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i/src/ivos -isystem /gpfs | |
| /bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gc | |
| c-12.2.0-skylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_ | |
| suppress=1,47,111,128,170,174,177,180,186,301,541,550,816,941,2465 | |
| -noswitcherror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/ivoc.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc | |
| /ivoc.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.c | |
| pp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1367 | |
| 39/J796670/spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y | |
| 2wi3sixuskv6pgxw/spack-src/src/ivoc/ivoc.cpp | |
| >> 1034 FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o | |
| 1035 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 62/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMPICH_SKIP_MP | |
| ICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER | |
| -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DR123_ | |
| USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGN | |
| U=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796670/spack-build/spack-stage-neuron-develop-5ecr | |
| p6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i -I/gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/ | |
| spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack- | |
| build-5ecrp6i/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796670/spack-build/spack-stage-neuron-develop-5ecr | |
| p6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/src -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/spack- | |
| stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/ex | |
| ternal/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b | |
| bpcihpcproj12/P136739/J796670/spack-build/spack-stage-neuron-devel | |
| op-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i/src/nrniv/ | |
| oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_ext | |
| ernals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/include/pyt | |
| hon3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_external | |
| s/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/include -I/g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670 | |
| /spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixusk | |
| v6pgxw/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage- | |
| neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/src/ivos | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7 | |
| 96670/spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3s | |
| ixuskv6pgxw/spack-build-5ecrp6i/src/ivos -isystem /gpfs/bbp.cscs.c | |
| h/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-sk | |
| ylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_suppress=1, | |
| 47,111,128,170,174,177,180,186,301,541,550,816,941,2465 -noswitche | |
| rror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/iv | |
| oc.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o | |
| .d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o -c /gp | |
| fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/ | |
| spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv | |
| 6pgxw/spack-src/src/ivoc/ivoc.cpp | |
| >> 1036 "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 670/spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3six | |
| uskv6pgxw/spack-src/src/oc/nrnfilewrap.h", line 3: catastrophic er | |
| ror: cannot open source file "nrnmpiuse.h" | |
| 1037 #include "nrnmpiuse.h" | |
| 1038 ^ | |
| 1039 | |
| 1040 1 catastrophic error detected in the compilation of "/gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-buil | |
| d/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spac | |
| k-src/src/ivoc/ivoc.cpp". | |
| 1041 Compilation terminated. | |
| 1042 [658/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_CALIPER -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICX | |
| X=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBB | |
| S=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-neuron-d | |
| evelop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/s | |
| pack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6 | |
| pgxw/spack-build-5ecrp6i/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-neuron-d | |
| evelop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-b | |
| uild/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/s | |
| pack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-n | |
| euron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i | |
| /src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/ | |
| include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/sta | |
| ge_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/i | |
| nclude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796670/spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4 | |
| y2wi3sixuskv6pgxw/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/s | |
| pack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-s | |
| rc/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796670/spack-build/spack-stage-neuron-develop-5ecrp6ivwo | |
| snnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i/src/ivos -isystem /gpfs | |
| /bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gc | |
| c-12.2.0-skylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_ | |
| suppress=1,47,111,128,170,174,177,180,186,301,541,550,816,941,2465 | |
| -noswitcherror --c++17 -O1 -MD -MT src/nrniv/CMakeFiles/nrniv_lib | |
| .dir/__/ivoc/ivocvect.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/ivocvect.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__ | |
| /ivoc/ivocvect.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc | |
| ihpcproj12/P136739/J796670/spack-build/spack-stage-neuron-develop- | |
| 5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/src/ivoc/ivocvect.cpp | |
| >> 1043 FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o | |
| 1044 /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7966 | |
| 62/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMPICH_SKIP_MP | |
| ICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER | |
| -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DR123_ | |
| USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGN | |
| U=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796670/spack-build/spack-stage-neuron-develop-5ecr | |
| p6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i -I/gpfs/bbp.cscs. | |
| ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/ | |
| spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack- | |
| build-5ecrp6i/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796670/spack-build/spack-stage-neuron-develop-5ecr | |
| p6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/src -I/gpfs/bbp.cscs.ch/ssd | |
| /gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/spack- | |
| stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/ex | |
| ternal/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b | |
| bpcihpcproj12/P136739/J796670/spack-build/spack-stage-neuron-devel | |
| op-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i/src/nrniv/ | |
| oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_ext | |
| ernals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/include/pyt | |
| hon3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_external | |
| s/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/include -I/g | |
| pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670 | |
| /spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixusk | |
| v6pgxw/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.ch/ssd/gitla | |
| b_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage- | |
| neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/src/ivos | |
| -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J7 | |
| 96670/spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3s | |
| ixuskv6pgxw/spack-build-5ecrp6i/src/ivos -isystem /gpfs/bbp.cscs.c | |
| h/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-sk | |
| ylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_suppress=1, | |
| 47,111,128,170,174,177,180,186,301,541,550,816,941,2465 -noswitche | |
| rror --c++17 -O1 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivo | |
| c/ivocvect.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/iv | |
| ocvect.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocv | |
| ect.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/ | |
| P136739/J796670/spack-build/spack-stage-neuron-develop-5ecrp6ivwos | |
| nnb4y2wi3sixuskv6pgxw/spack-src/src/ivoc/ivocvect.cpp | |
| >> 1045 "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796 | |
| 670/spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3six | |
| uskv6pgxw/spack-src/src/oc/nrnfilewrap.h", line 3: catastrophic er | |
| ror: cannot open source file "nrnmpiuse.h" | |
| 1046 #include "nrnmpiuse.h" | |
| 1047 ^ | |
| 1048 | |
| 1049 1 catastrophic error detected in the compilation of "/gpfs/bbp.csc | |
| s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-buil | |
| d/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spac | |
| k-src/src/ivoc/ivocvect.cpp". | |
| 1050 Compilation terminated. | |
| 1051 [659/2529] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P1 | |
| 36739/J796662/spack/lib/spack/env/nvhpc/nvc++ -DHAVE_CONFIG_H -DMP | |
| ICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_AVOID_ABSOLUTE_PATHS -D | |
| NRN_CALIPER -DNRN_ENABLE_THREADS -DNRN_PROFILING -DOMPI_SKIP_MPICX | |
| X=1 -DR123_USE_INTRIN_H=0 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBB | |
| S=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-neuron-d | |
| evelop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i -I/gpf | |
| s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/s | |
| pack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6 | |
| pgxw/spack-build-5ecrp6i/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jo | |
| bs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-neuron-d | |
| evelop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/src -I/gpfs/bbp. | |
| cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-b | |
| uild/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/s | |
| pack-src/external/Random123/include -I/gpfs/bbp.cscs.ch/ssd/gitlab | |
| _map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-n | |
| euron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i | |
| /src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-2 | |
| 3/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/ | |
| include/python3.10 -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/sta | |
| ge_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w/i | |
| nclude -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136 | |
| 739/J796670/spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4 | |
| y2wi3sixuskv6pgxw/spack-src/src/nrniv/nrniv_lib -I/gpfs/bbp.cscs.c | |
| h/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/s | |
| pack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-s | |
| rc/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12 | |
| /P136739/J796670/spack-build/spack-stage-neuron-develop-5ecrp6ivwo | |
| snnb4y2wi3sixuskv6pgxw/spack-build-5ecrp6i/src/ivos -isystem /gpfs | |
| /bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gc | |
| c-12.2.0-skylake/caliper-2.8.0-c3723h/include -g -O1 -fPIC --diag_ | |
| suppress=1,47,111,128,170,174,177,180,186,301,541,550,816,941,2465 | |
| -noswitcherror --c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir | |
| /__/ivoc/mlinedit.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ | |
| ivoc/mlinedit.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivo | |
| c/mlinedit.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc | |
| proj12/P136739/J796670/spack-build/spack-stage-neuron-develop-5ecr | |
| p6ivwosnnb4y2wi3sixuskv6pgxw/spack-src/src/ivoc/mlinedit.cpp | |
| See build log for details: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796670/spack-build/spack-stage-neuron-develop-5ecrp6ivwosnnb4y2wi3sixuskv6pgxw/spack-build-out.txt | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| srun: error: r2i0n8: task 0: Exited with exit code 1 | |
| section_end:1688640962:step_script [0Ksection_start:1688640962:upload_artifacts_on_failure [0K[0K[36;1mUploading artifacts for failed job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=249891 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=796670 responseStatus[0;m=201 Created token[0;m=64_wKRub | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=249930 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=796670 responseStatus[0;m=201 Created token[0;m=64_wKRub | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=249971 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=796670 responseStatus[0;m=201 Created token[0;m=64_wKRub | |
| section_end:1688640964:upload_artifacts_on_failure [0Ksection_start:1688640964:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1688640965:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1688640187:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1688640187:resolve_secrets [0Ksection_start:1688640187:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2791961321, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 136739, build ref , job ID 796664 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J796664_PROD_P2160_CP0_C0 | |
| Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1609424 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G --job-name=GL_J796664_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739 --ntasks=2 --jobid=1609424 --cpus-per-task=8 --mem=76G | |
| section_end:1688640188:prepare_executor [0Ksection_start:1688640188:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i6n25 via bbpv1.epfl.ch... | |
| section_end:1688640192:prepare_script [0Ksection_start:1688640192:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1688640192:get_sources [0Ksection_start:1688640192:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=99055 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1688640203:restore_cache [0Ksection_start:1688640203:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for spack_setup (796662)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=99183 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=796662 responseStatus[0;m=200 OK token[0;m=64_cHfxp | |
| section_end:1688640204:download_artifacts [0Ksection_start:1688640204:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796664/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796664/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796664/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796664/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796664/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:18 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:19 # This is the path to the root of the Spack install tree. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:19 # You can use $spack here to refer to the root of the spack instance. | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:37 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:38 # Directory where licenses should be located | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:76 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:89 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:95 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:100 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:108 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:114 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:119 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:124 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:129 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:137 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:146 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:151 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:180 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:187 db_lock_timeout: 300 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:195 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:200 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:205 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:211 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:216 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:221 terminal_title: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/config.yaml:225 binary_index_ttl: 600 | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796664/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:22 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:26 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:30 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662/spack/etc/spack/defaults/concretizer.yaml:36 unify: True | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739/J796664_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl%gcc ~legacy-unit | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1609424/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1609424/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Jul 6 12:43:34 2023 | |
| Hits: 0 / 0 | |
| Direct: 0 / 0 | |
| Preprocessed: 0 / 0 | |
| Misses: 0 | |
| Direct: 0 | |
| Preprocessed: 0 | |
| Primary storage: | |
| Hits: 0 / 0 | |
| Misses: 0 | |
| Cache size (GB): 0.45 / 0.51 (87.96 %) | |
| Files: 1697 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl%gcc~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - zlmltvg nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] sgwmsqz ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 7v6k26x ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] u27b4to ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] vb7bdpg ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [^] bbjadbi ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] t7yyhxk ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake | |
| [^] zk4skox ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ee7ugzv ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] 3s7iuck ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4uhr4f ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 3wgk4cb ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] c6hdpvj ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] ffmy45c ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] pi3gdaj ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [^] gv336wl ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] axib53z ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] s5xlzyb ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ugynn7h ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4ld7fki ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d7dkmvv ^py-flit-core@3.7.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4kxd5n3 ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jrwy3zz ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] zbqiukk ^py-setuptools-scm@7.0.5%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ihcuyox ^py-typing-extensions@4.3.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] ksqdpfx ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d4xzk5t ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] skgytub ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] bjojgfi ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] d5vf2au ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7rza5j7 ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] c2xj4m2 ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake | |
| [^] xfi3vdr ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id) | |
| ==> cmake@3.24.3 : has external module in ['cmake/3.24.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg) | |
| ==> python@3.10.8 : has external module in ['python/3.10.8'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-flit-core-3.7.1-d7dkmv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-typing-extensions-4.3.0-ihcuyo | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-scm-7.0.5-zbqiuk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w | |
| ==> Installing nmodl-develop-zlmltvgvaevja4rnq63lrqpowknrsuu3 | |
| ==> No binary for nmodl-develop-zlmltvgvaevja4rnq63lrqpowknrsuu3 found: installing from source | |
| ==> No patches needed for nmodl | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| ==> nmodl: Successfully installed nmodl-develop-zlmltvgvaevja4rnq63lrqpowknrsuu3 | |
| Fetch: 54.93s. Build: 2m 17.63s. Total: 3m 12.56s. | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/software/install_gcc-12.2.0-skylake/nmodl-develop-zlmltv | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be zlmltvgvaevja4rnq63lrqpowknrsuu3 | |
| [32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m | |
| [32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Summary: | |
| Cache directory: /nvme/bbpcihpcproj12/1609424/ccache | |
| Primary config: /nvme/bbpcihpcproj12/1609424/ccache/ccache.conf | |
| Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf | |
| Stats updated: Thu Jul 6 12:48:09 2023 | |
| Hits: 129 / 131 (98.47 %) | |
| Direct: 27 / 131 (20.61 %) | |
| Preprocessed: 102 / 104 (98.08 %) | |
| Misses: 2 | |
| Direct: 104 | |
| Preprocessed: 2 | |
| Uncacheable: 25 | |
| Primary storage: | |
| Hits: 156 / 262 (59.54 %) | |
| Misses: 106 | |
| Cache size (GB): 0.45 / 0.51 (87.99 %) | |
| Files: 1701 | |
| Uncacheable: | |
| Called for linking: 24 | |
| No input file: 1 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| Autoloading python/3.10.8 | |
| Autoloading intel-oneapi-mkl/2021.4.0 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1688640490:step_script [0Ksection_start:1688640490:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102499 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1688640510:archive_cache [0Ksection_start:1688640510:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102691 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=796664 responseStatus[0;m=201 Created token[0;m=64_cHfxp | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102732 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=796664 responseStatus[0;m=201 Created token[0;m=64_cHfxp | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=102776 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=796664 responseStatus[0;m=201 Created token[0;m=64_cHfxp | |
| section_end:1688640512:upload_artifacts_on_success [0Ksection_start:1688640512:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1688640512:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m | |
| [0K on macos-arm64 vGzz-bdp[0;m | |
| section_start:1688640017:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1688640017:resolve_secrets [0Ksection_start:1688640017:prepare_executor [0K[0K[36;1mPreparing the "shell" executor[0;m[0;m | |
| [0KUsing Shell executor...[0;m | |
| section_end:1688640017:prepare_executor [0Ksection_start:1688640017:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on bbpmacglr01.bbp.epfl.ch... | |
| section_end:1688640017:prepare_script [0Ksection_start:1688640017:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mFetching changes with git depth set to 20...[0;m | |
| Initialized empty Git repository in /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/.git/ | |
| [32;1mCreated fresh repository.[0;m | |
| [32;1mChecking out a40e447d as cornu/clean_headers...[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1688640019:get_sources [0Ksection_start:1688640019:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-cornu/clean_headers-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=arm64 os[0;m=darwin pid[0;m=4538 revision[0;m=43b2dc3d version[0;m=15.4.0 | |
| No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1688640023:restore_cache [0Ksection_start:1688640023:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [32;1m$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ real_python=$(python3 resolve_shim.py)[0;m | |
| [32;1m$ echo "python3=$(command -v python3) is really ${real_python}"[0;m | |
| python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.8/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python | |
| [32;1m$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv[0;m | |
| [32;1m$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt[0;m | |
| Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (22.2.2) | |
| Collecting pip | |
| Using cached pip-23.1.2-py3-none-any.whl (2.1 MB) | |
| Collecting wheel | |
| Using cached wheel-0.40.0-py3-none-any.whl (64 kB) | |
| Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (65.4.1) | |
| Collecting setuptools | |
| Using cached setuptools-68.0.0-py3-none-any.whl (804 kB) | |
| Collecting setuptools_scm | |
| Using cached setuptools_scm-7.1.0-py3-none-any.whl (43 kB) | |
| Collecting scikit-build | |
| Using cached scikit_build-0.17.6-py3-none-any.whl (84 kB) | |
| Collecting matplotlib | |
| Using cached matplotlib-3.7.2-cp310-cp310-macosx_11_0_arm64.whl (7.3 MB) | |
| Collecting bokeh<3 | |
| Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB) | |
| Collecting ipython | |
| Using cached ipython-8.14.0-py3-none-any.whl (798 kB) | |
| Collecting cython | |
| Using cached Cython-0.29.36-py2.py3-none-any.whl (988 kB) | |
| Collecting packaging | |
| Using cached packaging-23.1-py3-none-any.whl (48 kB) | |
| Collecting pytest | |
| Using cached pytest-7.4.0-py3-none-any.whl (323 kB) | |
| Collecting pytest-cov | |
| Using cached pytest_cov-4.1.0-py3-none-any.whl (21 kB) | |
| Collecting mpi4py | |
| Using cached mpi4py-3.1.4-cp310-cp310-macosx_12_0_arm64.whl | |
| Collecting numpy | |
| Using cached numpy-1.25.0-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB) | |
| Collecting find_libpython | |
| Using cached find_libpython-0.3.0-py3-none-any.whl (8.5 kB) | |
| Collecting tomli>=1.0.0 | |
| Using cached tomli-2.0.1-py3-none-any.whl (12 kB) | |
| Collecting typing-extensions | |
| Using cached typing_extensions-4.7.1-py3-none-any.whl (33 kB) | |
| Collecting distro | |
| Using cached distro-1.8.0-py3-none-any.whl (20 kB) | |
| Collecting pyparsing<3.1,>=2.3.1 | |
| Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB) | |
| Collecting kiwisolver>=1.0.1 | |
| Using cached kiwisolver-1.4.4-cp310-cp310-macosx_11_0_arm64.whl (63 kB) | |
| Collecting python-dateutil>=2.7 | |
| Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) | |
| Collecting pillow>=6.2.0 | |
| Using cached Pillow-10.0.0-cp310-cp310-macosx_11_0_arm64.whl (3.1 MB) | |
| Collecting cycler>=0.10 | |
| Using cached cycler-0.11.0-py3-none-any.whl (6.4 kB) | |
| Collecting contourpy>=1.0.1 | |
| Using cached contourpy-1.1.0-cp310-cp310-macosx_11_0_arm64.whl (229 kB) | |
| Collecting fonttools>=4.22.0 | |
| Using cached fonttools-4.40.0-cp310-cp310-macosx_10_9_universal2.whl (2.6 MB) | |
| Collecting PyYAML>=3.10 | |
| Using cached PyYAML-6.0-cp310-cp310-macosx_11_0_arm64.whl (173 kB) | |
| Collecting tornado>=5.1 | |
| Using cached tornado-6.3.2-cp38-abi3-macosx_10_9_universal2.whl (424 kB) | |
| Collecting Jinja2>=2.9 | |
| Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB) | |
| Collecting pygments>=2.4.0 | |
| Using cached Pygments-2.15.1-py3-none-any.whl (1.1 MB) | |
| Collecting pexpect>4.3 | |
| Using cached pexpect-4.8.0-py2.py3-none-any.whl (59 kB) | |
| Collecting decorator | |
| Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB) | |
| Collecting pickleshare | |
| Using cached pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB) | |
| Collecting traitlets>=5 | |
| Using cached traitlets-5.9.0-py3-none-any.whl (117 kB) | |
| Collecting appnope | |
| Using cached appnope-0.1.3-py2.py3-none-any.whl (4.4 kB) | |
| Collecting stack-data | |
| Using cached stack_data-0.6.2-py3-none-any.whl (24 kB) | |
| Collecting backcall | |
| Using cached backcall-0.2.0-py2.py3-none-any.whl (11 kB) | |
| Collecting matplotlib-inline | |
| Using cached matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB) | |
| Collecting jedi>=0.16 | |
| Using cached jedi-0.18.2-py2.py3-none-any.whl (1.6 MB) | |
| Collecting prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30 | |
| Using cached prompt_toolkit-3.0.39-py3-none-any.whl (385 kB) | |
| Collecting pluggy<2.0,>=0.12 | |
| Using cached pluggy-1.2.0-py3-none-any.whl (17 kB) | |
| Collecting iniconfig | |
| Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB) | |
| Collecting exceptiongroup>=1.0.0rc8 | |
| Using cached exceptiongroup-1.1.2-py3-none-any.whl (14 kB) | |
| Collecting coverage[toml]>=5.2.1 | |
| Using cached coverage-7.2.7-cp310-cp310-macosx_11_0_arm64.whl (201 kB) | |
| Collecting parso<0.9.0,>=0.8.0 | |
| Using cached parso-0.8.3-py2.py3-none-any.whl (100 kB) | |
| Collecting MarkupSafe>=2.0 | |
| Using cached MarkupSafe-2.1.3-cp310-cp310-macosx_10_9_universal2.whl (17 kB) | |
| Collecting ptyprocess>=0.5 | |
| Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB) | |
| Collecting wcwidth | |
| Using cached wcwidth-0.2.6-py2.py3-none-any.whl (29 kB) | |
| Collecting six>=1.5 | |
| Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) | |
| Collecting pure-eval | |
| Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB) | |
| Collecting executing>=1.2.0 | |
| Using cached executing-1.2.0-py2.py3-none-any.whl (24 kB) | |
| Collecting asttokens>=2.1.0 | |
| Using cached asttokens-2.2.1-py2.py3-none-any.whl (26 kB) | |
| Installing collected packages: wcwidth, pure-eval, ptyprocess, pickleshare, find_libpython, executing, backcall, appnope, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pip, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, exceptiongroup, distro, decorator, cython, cycler, coverage, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython | |
| Attempting uninstall: setuptools | |
| Found existing installation: setuptools 65.4.1 | |
| Uninstalling setuptools-65.4.1: | |
| Successfully uninstalled setuptools-65.4.1 | |
| Attempting uninstall: pip | |
| Found existing installation: pip 22.2.2 | |
| Uninstalling pip-22.2.2: | |
| Successfully uninstalled pip-22.2.2 | |
| Successfully installed Jinja2-3.1.2 MarkupSafe-2.1.3 PyYAML-6.0 appnope-0.1.3 asttokens-2.2.1 backcall-0.2.0 bokeh-2.4.3 contourpy-1.1.0 coverage-7.2.7 cycler-0.11.0 cython-0.29.36 decorator-5.1.1 distro-1.8.0 exceptiongroup-1.1.2 executing-1.2.0 find_libpython-0.3.0 fonttools-4.40.0 iniconfig-2.0.0 ipython-8.14.0 jedi-0.18.2 kiwisolver-1.4.4 matplotlib-3.7.2 matplotlib-inline-0.1.6 mpi4py-3.1.4 numpy-1.25.0 packaging-23.1 parso-0.8.3 pexpect-4.8.0 pickleshare-0.7.5 pillow-10.0.0 pip-23.1.2 pluggy-1.2.0 prompt-toolkit-3.0.39 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.15.1 pyparsing-3.0.9 pytest-7.4.0 pytest-cov-4.1.0 python-dateutil-2.8.2 scikit-build-0.17.6 setuptools-68.0.0 setuptools_scm-7.1.0 six-1.16.0 stack-data-0.6.2 tomli-2.0.1 tornado-6.3.2 traitlets-5.9.0 typing-extensions-4.7.1 wcwidth-0.2.6 wheel-0.40.0 | |
| [32;1m$ git submodule update --init --recursive --force --depth 1 -- external/nmodl[0;m | |
| Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl' | |
| Cloning into '/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/nmodl'... | |
| From https://github.com/BlueBrain/nmodl | |
| * branch 2ce4a2b91dfcfe6356b6a5003c4e99b8711564ee -> FETCH_HEAD | |
| Submodule path 'external/nmodl': checked out '2ce4a2b91dfcfe6356b6a5003c4e99b8711564ee' | |
| Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions' | |
| Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2' | |
| Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11' | |
| Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen' | |
| Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt' | |
| Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json' | |
| Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11' | |
| Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog' | |
| Cloning into '/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'... | |
| Cloning into '/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/nmodl/ext/catch2'... | |
| Cloning into '/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/nmodl/ext/cli11'... | |
| Cloning into '/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/nmodl/ext/eigen'... | |
| Cloning into '/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/nmodl/ext/fmt'... | |
| Cloning into '/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/nmodl/ext/json'... | |
| Cloning into '/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/nmodl/ext/pybind11'... | |
| Cloning into '/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/nmodl/ext/spdlog'... | |
| Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d' | |
| From https://github.com/catchorg/Catch2 | |
| * branch 3f0283de7a9c43200033da996ff9093be3ac84dc -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/catch2': checked out '3f0283de7a9c43200033da996ff9093be3ac84dc' | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch b9be5b9444772324459989177108a6a65b8b2769 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/cli11': checked out 'b9be5b9444772324459989177108a6a65b8b2769' | |
| From https://gitlab.com/libeigen/eigen | |
| * branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
| From https://github.com/fmtlib/fmt | |
| * branch a33701196adfad74917046096bf5a2aa0ab0bb50 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/fmt': checked out 'a33701196adfad74917046096bf5a2aa0ab0bb50' | |
| From https://github.com/nlohmann/json | |
| * branch 4f8fba14066156b73f1189a2b8bd568bde5284c5 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/json': checked out '4f8fba14066156b73f1189a2b8bd568bde5284c5' | |
| From https://github.com/pybind/pybind11 | |
| * branch 914c06fb252b6cc3727d0eedab6736e88a3fcb01 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/pybind11': checked out '914c06fb252b6cc3727d0eedab6736e88a3fcb01' | |
| From https://github.com/gabime/spdlog | |
| * branch 76fb40d95455f249bd70824ecfcae7a8f0930fa3 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/spdlog': checked out '76fb40d95455f249bd70824ecfcae7a8f0930fa3' | |
| [32;1m$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt[0;m | |
| Requirement already satisfied: Jinja2>=2.9.3 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 1)) (3.1.2) | |
| Requirement already satisfied: PyYAML>=3.13 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 2)) (6.0) | |
| Requirement already satisfied: pytest in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 3)) (7.4.0) | |
| Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 4)) (4.1.0) | |
| Collecting sympy (from -r external/nmodl/requirements.txt (line 5)) | |
| Using cached sympy-1.12-py3-none-any.whl (5.7 MB) | |
| Requirement already satisfied: numpy in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 6)) (1.25.0) | |
| Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 7)) (0.3.0) | |
| Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 1)) (2.1.3) | |
| Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.0) | |
| Requirement already satisfied: packaging in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (23.1) | |
| Requirement already satisfied: pluggy<2.0,>=0.12 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.2.0) | |
| Requirement already satisfied: exceptiongroup>=1.0.0rc8 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.1.2) | |
| Requirement already satisfied: tomli>=1.0.0 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.1) | |
| Requirement already satisfied: coverage[toml]>=5.2.1 in ./venv/lib/python3.10/site-packages (from pytest-cov->-r external/nmodl/requirements.txt (line 4)) (7.2.7) | |
| Collecting mpmath>=0.19 (from sympy->-r external/nmodl/requirements.txt (line 5)) | |
| Using cached mpmath-1.3.0-py3-none-any.whl (536 kB) | |
| Installing collected packages: mpmath, sympy | |
| Successfully installed mpmath-1.3.0 sympy-1.12 | |
| [32;1m$ source ./venv/bin/activate[0;m | |
| [32;1m$ export PYTHON=${PWD}/venv/bin/python[0;m | |
| [32;1m$ ${PYTHON} --version[0;m | |
| Python 3.10.8 | |
| [32;1m$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"[0;m | |
| [32;1m$ export CXX=${CXX:-g++}[0;m | |
| [32;1m$ export CC=${CC:-gcc}[0;m | |
| [32;1m$ brew install flex bison[0;m | |
| Running `brew update --auto-update`... | |
| Warning: flex 2.6.4_2 is already installed and up-to-date. | |
| To reinstall 2.6.4_2, run: | |
| brew reinstall flex | |
| Warning: bison 3.8.2 is already installed and up-to-date. | |
| To reinstall 3.8.2, run: | |
| brew reinstall bison | |
| [32;1m$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"[0;m | |
| [32;1m$ export INSTALL_DIR=$(pwd)/install[0;m | |
| [32;1m$ echo $LANG[0;m | |
| [32;1m$ echo $LC_ALL[0;m | |
| [32;1m$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")[0;m | |
| [32;1m$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'[0;m | |
| [32;1m$ cmake_args=(-G Ninja)[0;m | |
| [32;1m$ if [[ -n "${sanitizer}" ]]; then[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})[0;m | |
| [32;1m$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")[0;m | |
| [32;1m$ mkdir build && cd build[0;m | |
| [32;1m$ echo "Building with ${cmake_args[@]}"[0;m | |
| Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/venv/bin/python | |
| [32;1m$ cmake .. "${cmake_args[@]}"[0;m | |
| -- The C compiler identification is AppleClang 14.0.0.14000029 | |
| -- The CXX compiler identification is AppleClang 14.0.0.14000029 | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working C compiler: /usr/bin/gcc - skipped | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Check for working CXX compiler: /usr/bin/g++ - skipped | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check | |
| -- Sub-module : missing external/coding-conventions : running git submodule update --init | |
| Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions' | |
| Cloning into '/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/coding-conventions'... | |
| Submodule path 'external/coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d' | |
| -- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123 | |
| Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123' | |
| Cloning into '/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/Random123'... | |
| From https://github.com/BlueBrain/Random123 | |
| * branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD | |
| Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1' | |
| -- 3rd party project: using Random123 from "external/Random123" | |
| -- Enabling sanitizers: address | |
| -- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
| -- Checking if /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/venv/bin/python is a working python | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2") | |
| -- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6") | |
| -- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include | |
| -- Found MPI_C: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Detected OpenMPI 4.1.4 | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success | |
| -- Found Threads: TRUE | |
| -- Building CoreNEURON | |
| -- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11 | |
| Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11' | |
| Cloning into '/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/CLI11'... | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD | |
| Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2' | |
| -- 3rd party project: using CLI11 from "external/CLI11" | |
| -- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)") | |
| -- Found Perl: /usr/bin/perl (found version "5.30.3") | |
| -- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH) | |
| -- Sub-project : using nmodl from from /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/nmodl | |
| -- CHECKING FOR FLEX/BISON | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0") | |
| -- Adding Flex include path as : /opt/homebrew/opt/flex/include/ | |
| -- NMODL_TEST_FORMATTING: OFF | |
| -- NMODL_GIT_HOOKS: OFF | |
| -- NMODL_GIT_COMMIT_HOOKS: | |
| -- NMODL_GIT_PUSH_HOOKS: courtesy-msg | |
| -- NMODL_STATIC_ANALYSIS: OFF | |
| -- NMODL_TEST_STATIC_ANALYSIS: OFF | |
| -- 3rd party project: using eigen from "ext/eigen" | |
| -- 3rd party project: using fmt from "ext/fmt" | |
| -- Module support is disabled. | |
| -- Version: 9.1.0 | |
| -- Build type: Custom | |
| -- CXX_STANDARD: 17 | |
| -- Required features: cxx_variadic_templates | |
| -- 3rd party project: using json from "ext/json" | |
| -- Using the single-header code from /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/nmodl/ext/json/single_include/ | |
| -- 3rd party project: using pybind11 from "ext/pybind11" | |
| -- pybind11 v2.9.2 | |
| -- Found PythonInterp: /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/venv/bin/python (found version "3.10.8") | |
| -- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- 3rd party project: using spdlog from "ext/spdlog" | |
| -- Build spdlog: 1.10.0 | |
| -- Build type: Custom | |
| -- CHECKING FOR PYTHON | |
| -- Found PythonInterp: /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.8", minimum required is "3.8") | |
| -- | |
| -- Configured NMODL 0.0 (2ce4a2b 2023-06-05 16:57:21 +0200) | |
| -- | |
| -- You can now build NMODL using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------------+-------------------------------------------------------- | |
| -- test | Run unit tests | |
| -- install | Will install NMODL to: /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/install | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g | |
| -- Build Type | Custom | |
| -- Legacy Units | OFF | |
| -- Python Bindings | ON | |
| -- Flex | /opt/homebrew/opt/flex/bin/flex | |
| -- Bison | /opt/homebrew/opt/bison/bin/bison | |
| -- Python | /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/venv/bin/python | |
| -- Linked against | TRUE | |
| -- --------------+-------------------------------------------------------------- | |
| -- See documentation : https://github.com/BlueBrain/nmodl/ | |
| -- --------------+-------------------------------------------------------------- | |
| -- | |
| -- Boost found, unit tests enabled | |
| -- | |
| -- CoreNEURON is enabled with following build configuration: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -std=c++17 -DCORENEURON_BUILD -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -DCORENEURON_USE_LEGACY_UNITS=0 -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope | |
| -- Build Type | SHARED | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include | |
| -- OpenMP | ON | |
| -- Use legacy units | OFF | |
| -- NMODL PATH | /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build/bin/nmodl | |
| -- NMODL FLAGS | | |
| -- GPU Support | OFF | |
| -- Auto Timeout | ON | |
| -- Wrap exp() | OFF | |
| -- SplayTree Queue | ON | |
| -- NetReceive Buffer | ON | |
| -- Caliper | OFF | |
| -- Likwid | OFF | |
| -- Unit Tests | ON | |
| -- Reporting | OFF | |
| -- --------------+-------------------------------------------------------------- | |
| -- | |
| Extracting link flags from target 'nrngnu', beware that this can be fragile. Got: | |
| Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: | |
| Generating link flags from path /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib | |
| Generating link flags from path /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib | |
| -- Sub-module : missing /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/catch2 : running git submodule update --init | |
| Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2' | |
| Cloning into '/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/catch2'... | |
| Submodule path 'external/catch2': checked out 'c4e3767e265808590986d5db6ca1b5532a7f3d13' | |
| -- Found Python module 'pytest' with version(s): 7.4.0 | |
| -- Found Python module 'pytest_cov' with version(s): 4.1.0 | |
| -- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata | |
| Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata' | |
| Cloning into '/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/test/rxd/testdata'... | |
| From https://github.com/neuronsimulator/rxdtestdata | |
| * branch be297655abf0f98be95a051576d43aad23cebbf0 -> FETCH_HEAD | |
| Submodule path 'test/rxd/testdata': checked out 'be297655abf0f98be95a051576d43aad23cebbf0' | |
| -- 3rd party project: using rxd/testdata from "test/rxd/testdata" | |
| -- Found Python module 'mpi4py' with version(s): 3.1.4 | |
| -- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled | |
| -- Found Python module 'mpi4py' with version(s): 3.1.4 | |
| -- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::inputpresyn_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled | |
| -- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled | |
| -- Could NOT find OpenSSL, try to set the path to OpenSSL root folder in the system variable OPENSSL_ROOT_DIR (missing: OPENSSL_CRYPTO_LIBRARY OPENSSL_INCLUDE_DIR) | |
| -- Skipping tqperf test as OpenSSL package not found | |
| -- | |
| -- Configured NEURON 9.0.0 | |
| -- | |
| -- You can now build NEURON using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------+-------------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------+-------------------------------------------------------------- | |
| -- install | Will install NEURON to: /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/install | |
| -- | Change the install location of NEURON using: | |
| -- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path> | |
| -- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean | |
| -- uninstall | Removes files installed by make install (todo) | |
| -- --------------+-------------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------+-------------------------------------------------------------- | |
| -- C COMPILER | /usr/bin/gcc | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast) | |
| -- COMPILE FLAGS | -O1 -g -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope | |
| -- Shared | ON | |
| -- Default units | modern units (2019 nist constants) | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include | |
| -- LIB | /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib | |
| -- Python | ON | |
| -- DYNAMIC | OFF | |
| -- MODULE | ON | |
| -- python3.10 (default) | |
| -- EXE | /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/venv/bin/python | |
| -- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 | |
| -- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd | |
| -- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd | |
| -- RX3D | OFF | |
| -- Interviews | OFF | |
| -- CoreNEURON | ON | |
| -- PATH | /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/coreneuron | |
| -- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib | |
| -- Legacy Units| OFF | |
| -- Tests | ON | |
| -- --------------+-------------------------------------------------------------- | |
| -- See documentation : https://www.neuron.yale.edu/neuron/ | |
| -- --------------+-------------------------------------------------------------- | |
| -- | |
| -- Configuring done | |
| -- Generating done | |
| -- Build files have been written to: /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build | |
| [32;1m$ ccache -z[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache -vs 2>/dev/null[0;m | |
| Cache directory: /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/ccache | |
| Config file: /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/ccache/ccache.conf | |
| System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf | |
| Stats updated: Thu Jul 6 12:41:34 2023 | |
| Local storage: | |
| Cache size (GB): 0.52 / 5.00 (10.38%) | |
| Files: 4308 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ cmake --build . --parallel[0;m | |
| [0/2] Re-checking globbed directories... | |
| [1/1732] Generating share/nrn/demo/demo.hoc | |
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| ../../../../../external/nmodl/src/parser/nmodl.yy:65.1-39: warning: deprecated directive: '%define parser_class_name {NmodlParser}', use '%define api.parser.class {NmodlParser}' [-Wdeprecated] | |
| 65 | %define parser_class_name {NmodlParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.parser.class {NmodlParser} | |
| ../../../../../external/nmodl/src/parser/nmodl.yy: warning: 3 shift/reduce conflicts [-Wconflicts-sr] | |
| ../../../../../external/nmodl/src/parser/nmodl.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| ../../../../../external/nmodl/src/parser/nmodl.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
| [485/1732] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/perf_stat.cpp.o | |
| [486/1732] -- COPYING NMODL PYTHON FILES -- | |
| [487/1732] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/string_utils.cpp.o | |
| [488/1732] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/ACG.cpp.o | |
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| [504/1732] [FLEX][modlunitlexer] Building scanner with flex 2.6.4 | |
| [505/1732] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Uniform.cpp.o | |
| [506/1732] [FLEX][nocmodllexer] Building scanner with flex 2.6.4 | |
| [507/1732] [BISON][nocmodlparser] Building parser with bison 3.8.2 | |
| ../src/nmodl/diffeq.ypp: warning: 5 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/nmodl/diffeq.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
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| [509/1732] Linking CXX static library lib/libnrngnu.a | |
| [510/1732] [BISON][modlunitparser] Building parser with bison 3.8.2 | |
| [511/1732] [BISON][ocparser] Building parser with bison 3.8.2 | |
| ../src/oc/parse.ypp: warning: 96 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/oc/parse.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| [512/1732] [BISON][nocmodlparser] Building parser with bison 3.8.2 | |
| ../src/nmodl/parse1.ypp: warning: 3 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/nmodl/parse1.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| [513/1732] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/consist.cpp.o | |
| [514/1732] cd /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h | |
| fatal: No names found, cannot describe anything. | |
| [515/1732] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/declare.cpp.o | |
| [516/1732] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/init.cpp.o | |
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| [537/1732] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/kinetic.cpp.o | |
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| [541/1732] Linking CXX static library lib/libcoreneuron-core.a | |
| [542/1732] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/noccout.cpp.o | |
| [543/1732] Linking CXX static library lib/libspdlog.a | |
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| [551/1732] Generating coreneuron_standalone/test_nrn_corenrn_standalone/test/coreneuron/test_psolve.py | |
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| [578/1732] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o | |
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| [588/1732] Generating nrniv_py3.10_python_check_sys_stderr.encoding/check_sys_attr.py | |
| [589/1732] Linking CXX shared library lib/librxdmath.dylib | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| [590/1732] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o | |
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| [627/1732] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc | |
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| [633/1732] Generating ../../compare_test_results.py | |
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| [635/1732] Generating ../tests/ringtest/reference_data/spk1.100ms.std.ref | |
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| [638/1732] Generating ../tests/testcorenrn/reference/out_conc.spk | |
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| [641/1732] Generating ../tests/testcorenrn/reference/out_patstim.spk | |
| [642/1732] Generating ../tests/testcorenrn/reference/out_netstimdirect.spk | |
| [643/1732] Generating ../tests/testcorenrn/reference/out_vecevent.spk | |
| [644/1732] Generating ../tests/testcorenrn/reference/out_vecplay.spk | |
| [645/1732] Generating ../tests/testcorenrn/reference/out_watch.spk | |
| [646/1732] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o | |
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| [648/1732] Linking CXX executable bin/nocmodl | |
| [649/1732] Building CXX object external/nmodl/src/pybind/CMakeFiles/pywrapper.dir/wrapper.cpp.o | |
| [650/1732] Linking CXX static library lib/libpywrapper.a | |
| [651/1732] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/logger.cpp.o | |
| [652/1732] Linking CXX static library lib/libutil.a | |
| [653/1732] -- NMODL : GENERATING NMODL LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/nmodl.ll:506: warning, -s option given but default rule can be matched | |
| [654/1732] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! -- | |
| [655/1732] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/diffeq.ll:103: warning, -s option given but default rule can be matched | |
| [656/1732] -- NMODL : GENERATING C(11) LEXER WITH FLEX! -- | |
| [657/1732] -- NMODL : GENERATING UNIT LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched | |
| [658/1732] Generating ../nrnoc/intfire1.cpp | |
| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/intfire1.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/expsyn.cpp | |
| Thread Safe | |
| [660/1732] Generating ../nrnoc/apcount.cpp | |
| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/apcount.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/feature.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
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| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/hh.cpp | |
| Thread Safe | |
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| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/intfire4.cpp | |
| Thread Safe | |
| [665/1732] Generating ../nrnoc/netstim.cpp | |
| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/netstim.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| [666/1732] Generating ../nrnoc/intfire2.cpp | |
| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/intfire2.cpp | |
| Thread Safe | |
| [667/1732] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_transform_visitor.cpp.o | |
| [668/1732] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_info.cpp.o | |
| [669/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/modtoken.cpp.o | |
| [670/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/token_mapping.cpp.o | |
| [671/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/nmodl_utils.cpp.o | |
| [672/1732] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_utils.cpp.o | |
| [673/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/verbatim_lexer.cpp.o | |
| [674/1732] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_acc_visitor.cpp.o | |
| [675/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/diffeq_base_lexer.cpp.o | |
| [676/1732] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_compatibility_visitor.cpp.o | |
| [677/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/c11_base_lexer.cpp.o | |
| [678/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/unit_base_lexer.cpp.o | |
| [679/1732] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_helper_visitor.cpp.o | |
| [680/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_context.cpp.o | |
| [681/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_driver.cpp.o | |
| [682/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/nmodl_base_lexer.cpp.o | |
| [683/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/verbatim_parser.cpp.o | |
| [684/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/c11_driver.cpp.o | |
| [685/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/unit_driver.cpp.o | |
| [686/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/c/c11_parser.cpp.o | |
| [687/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq/diffeq_parser.cpp.o | |
| [688/1732] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol_properties.cpp.o | |
| [689/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/unit/unit_parser.cpp.o | |
| [690/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/nmodl_driver.cpp.o | |
| [691/1732] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol.cpp.o | |
| [692/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/units/units.cpp.o | |
| [693/1732] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol_table.cpp.o | |
| [694/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/global_var_visitor.cpp.o | |
| [695/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/implicit_argument_visitor.cpp.o | |
| [696/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/indexedname_visitor.cpp.o | |
| [697/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/after_cvode_to_cnexp_visitor.cpp.o | |
| [698/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/constant_folder_visitor.cpp.o | |
| [699/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/local_to_assigned_visitor.cpp.o | |
| [700/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/nmodl/nmodl_parser.cpp.o | |
| [701/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/defuse_analyze_visitor.cpp.o | |
| [702/1732] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_cpp_visitor.cpp.o | |
| [703/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/local_var_rename_visitor.cpp.o | |
| [704/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/perf_visitor.cpp.o | |
| [705/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/kinetic_block_visitor.cpp.o | |
| [706/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/loop_unroll_visitor.cpp.o | |
| [707/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/inline_visitor.cpp.o | |
| [708/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/localize_visitor.cpp.o | |
| [709/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/neuron_solve_visitor.cpp.o | |
| [710/1732] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/ast/ast.cpp.o | |
| [711/1732] Linking CXX static library lib/liblexer.a | |
| [712/1732] Linking CXX static library lib/libsymtab.a | |
| [713/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/semantic_analysis_visitor.cpp.o | |
| [714/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/solve_block_visitor.cpp.o | |
| [715/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/rename_visitor.cpp.o | |
| [716/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/var_usage_visitor.cpp.o | |
| [717/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/verbatim_visitor.cpp.o | |
| [718/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/units_visitor.cpp.o | |
| [719/1732] Building CXX object external/nmodl/src/CMakeFiles/nmodl.dir/main.cpp.o | |
| [720/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/ast_visitor.cpp.o | |
| [721/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/steadystate_visitor.cpp.o | |
| [722/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/checkparent_visitor.cpp.o | |
| [723/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/json_visitor.cpp.o | |
| [724/1732] Linking CXX static library lib/libpyembed.a | |
| [725/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/verbatim_var_rename_visitor.cpp.o | |
| [726/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/lookup_visitor.cpp.o | |
| [727/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/visitor_utils.cpp.o | |
| [728/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_conductance_visitor.cpp.o | |
| [729/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_replace_solutions_visitor.cpp.o | |
| [730/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/nmodl_visitor.cpp.o | |
| [731/1732] Generating ../nrnoc/oclmp.cpp | |
| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/oclmp.cpp | |
| Thread Safe | |
| [732/1732] Generating ../nrnoc/passive.cpp | |
| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/passive.cpp | |
| Thread Safe | |
| [733/1732] Generating ../nrnoc/pattern.cpp | |
| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/pattern.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| [734/1732] Generating ../nrnoc/ppmark.cpp | |
| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/ppmark.cpp | |
| Thread Safe | |
| [735/1732] Generating ../nrnoc/stim.cpp | |
| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/stim.cpp | |
| Thread Safe | |
| [736/1732] Generating ../nrnoc/svclmp.cpp | |
| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/svclmp.cpp | |
| Thread Safe | |
| [737/1732] Generating ../nrnoc/syn.cpp | |
| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/syn.cpp | |
| Thread Safe | |
| [738/1732] Generating ../nrnoc/vclmp.cpp | |
| Translating /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrnoc/vclmp.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| Notice: LINEAR is not thread safe. | |
| [739/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/axis.cpp.o | |
| [740/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/apwindow.cpp.o | |
| [741/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/symtab_visitor.cpp.o | |
| [742/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/bndedval.cpp.o | |
| [743/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/cbwidget.cpp.o | |
| [744/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/checkpnt.cpp.o | |
| [745/1732] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_solver_visitor.cpp.o | |
| [746/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/epsprint.cpp.o | |
| [747/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/gifimage.cpp.o | |
| [748/1732] Linking CXX static library lib/libvisitor.a | |
| [749/1732] Linking CXX static library lib/libcodegen.a | |
| [750/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/fourier.cpp.o | |
| [751/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/graphvec.cpp.o | |
| [752/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/graph.cpp.o | |
| [753/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grmanip.cpp.o | |
| [754/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grglyph.cpp.o | |
| [755/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/hocmark.cpp.o | |
| [756/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/htlist.cpp.o | |
| [757/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/idraw.cpp.o | |
| [758/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o | |
| FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o | |
| ccache /usr/bin/g++ -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_ASAN_ENABLED -DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/Random123/include -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build/src/nrniv/oc_generated -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -I/opt/homebrew/Cellar/open-mpi/4.1.4_2/include -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrniv/nrniv_lib -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/ivos -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build/src/ivos -O1 -g -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -fPIC -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o -c /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/ivoc/ivoc.cpp | |
| In file included from /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/ivoc/ivoc.cpp:10: | |
| In file included from /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/oc/ocfunc.h:2: | |
| /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/oc/nrnfilewrap.h:3:10: fatal error: 'nrnmpiuse.h' file not found | |
| #include "nrnmpiuse.h" | |
| ^~~~~~~~~~~~~ | |
| 1 error generated. | |
| [759/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o | |
| FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o | |
| ccache /usr/bin/g++ -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_ASAN_ENABLED -DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/Random123/include -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build/src/nrniv/oc_generated -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -I/opt/homebrew/Cellar/open-mpi/4.1.4_2/include -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrniv/nrniv_lib -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/ivos -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build/src/ivos -O1 -g -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -fPIC -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocmain.cpp.o -c /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/ivoc/ivocmain.cpp | |
| In file included from /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/ivoc/ivocmain.cpp:37: | |
| /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/oc/nrnmpi.h:3:10: fatal error: 'nrnmpiuse.h' file not found | |
| #include "nrnmpiuse.h" | |
| ^~~~~~~~~~~~~ | |
| 1 error generated. | |
| [760/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o | |
| FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o | |
| ccache /usr/bin/g++ -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_ASAN_ENABLED -DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -DUSEBBS=1 -DUSEGNU=1 -DUSEMATRIX=1 -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/external/Random123/include -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build/src/nrniv/oc_generated -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -I/opt/homebrew/Cellar/open-mpi/4.1.4_2/include -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/nrniv/nrniv_lib -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/ivos -I/Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/build/src/ivos -O1 -g -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -fPIC -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17 -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o -c /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/ivoc/ivocvect.cpp | |
| In file included from /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/ivoc/ivocvect.cpp:125: | |
| In file included from /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/oc/ocfunc.h:2: | |
| /Users/gitlab-runner/builds/0/P136739/J796661/hpc/cellular/nrn/src/oc/nrnfilewrap.h:3:10: fatal error: 'nrnmpiuse.h' file not found | |
| #include "nrnmpiuse.h" | |
| ^~~~~~~~~~~~~ | |
| 1 error generated. | |
| [761/1732] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocrand.cpp.o | |
| [762/1732] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pynmodl.cpp.o | |
| [763/1732] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pyast.cpp.o | |
| [764/1732] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pysymtab.cpp.o | |
| [765/1732] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pynode_0.cpp.o | |
| [766/1732] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pynode_1.cpp.o | |
| [767/1732] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pyvisitor.cpp.o | |
| ninja: build stopped: subcommand failed. | |
| section_end:1688640153:step_script [0Ksection_start:1688640153:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1688640153:cleanup_file_variables [0K[31;1mERROR: Job failed: exit status 1 | |
| [0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1688640016:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1688640016:resolve_secrets [0Ksection_start:1688640016:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1588505691, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 136739, build ref , job ID 796662 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J796662_PROD_P2160_CP0_C0 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 1609422 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J796662_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739 --ntasks=1 --jobid=1609422 --cpus-per-task=6 --mem=30750M | |
| section_end:1688640017:prepare_executor [0Ksection_start:1688640017:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i6n25 via bbpv1.epfl.ch... | |
| section_end:1688640021:prepare_script [0Ksection_start:1688640021:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1688640022:get_sources [0Ksection_start:1688640022:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| # special case for SPACK_DEPLOYMENT_SUFFIX=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+\.]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| is_deployment_suffix = ref_type == 'suffix' and m.group(1).lower() == 'spack_deployment' | |
| if ref_type not in {'branch', 'tag', 'ref'} and not is_deployment_suffix: return | |
| print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3)) | |
| if pr_body is not None: | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m | |
| Autoloading python/3.10.8 | |
| Autoloading intel-oneapi-mkl/2021.4.0 | |
| Autoloading hpe-mpi/2.25.hmpt | |
| [32;1m$ else[0;m | |
| [32;1m$ cat input_variables.env[0;m | |
| [32;1m$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m | |
| [32;1m$ set -o allexport[0;m | |
| [32;1m$ . input_variables.env[0;m | |
| [32;1m$ set +o allexport[0;m | |
| [32;1m$ unset MODULEPATH[0;m | |
| [32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m | |
| [32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m | |
| [32;1m$ echo Preparing to clone Spack into ${PWD}[0;m | |
| Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P136739/J796662 | |
| [32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the develop of Spack... | |
| [32;1m$ module load unstable git[0;m | |
| [32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
| Cloning into 'spack'... | |
| Updating files: 2% (254/10327) Updating files: 3% (310/10327) Updating files: 4% (414/10327) Updating files: 4% (503/10327) Updating files: 5% (517/10327) Updating files: 6% (620/10327) Updating files: 7% (723/10327) Updating files: 7% (734/10327) Updating files: 8% (827/10327) Updating files: 9% (930/10327) Updating files: 9% (988/10327) Updating files: 10% (1033/10327) Updating files: 11% (1136/10327) Updating files: 11% (1153/10327) Updating files: 12% (1240/10327) Updating files: 13% (1343/10327) Updating files: 13% (1385/10327) Updating files: 14% (1446/10327) Updating files: 15% (1550/10327) Updating files: 15% (1576/10327) Updating files: 16% (1653/10327) Updating files: 16% (1662/10327) Updating files: 17% (1756/10327) Updating files: 18% (1859/10327) Updating files: 18% (1863/10327) Updating files: 19% (1963/10327) Updating files: 20% (2066/10327) Updating files: 20% (2096/10327) Updating files: 21% (2169/10327) Updating files: 21% (2242/10327) Updating files: 22% (2272/10327) Updating files: 22% (2356/10327) Updating files: 23% (2376/10327) Updating files: 24% (2479/10327) Updating files: 24% (2480/10327) Updating files: 25% (2582/10327) Updating files: 26% (2686/10327) Updating files: 26% (2705/10327) Updating files: 27% (2789/10327) Updating files: 28% (2892/10327) Updating files: 28% (2894/10327) Updating files: 29% (2995/10327) Updating files: 29% (3056/10327) Updating files: 30% (3099/10327) Updating files: 30% (3186/10327) Updating files: 31% (3202/10327) Updating files: 31% (3234/10327) Updating files: 32% (3305/10327) Updating files: 33% (3408/10327) Updating files: 34% (3512/10327) Updating files: 34% (3532/10327) Updating files: 35% (3615/10327) Updating files: 35% (3691/10327) Updating files: 36% (3718/10327) Updating files: 36% (3814/10327) Updating files: 37% (3821/10327) Updating files: 38% (3925/10327) Updating files: 38% (4018/10327) Updating files: 39% (4028/10327) Updating files: 40% (4131/10327) Updating files: 40% (4177/10327) Updating files: 41% (4235/10327) Updating files: 42% (4338/10327) Updating files: 42% (4362/10327) Updating files: 43% (4441/10327) Updating files: 43% (4504/10327) Updating files: 43% (4510/10327) Updating files: 44% (4544/10327) Updating files: 45% (4648/10327) Updating files: 46% (4751/10327) Updating files: 46% (4754/10327) Updating files: 47% (4854/10327) Updating files: 47% (4878/10327) Updating files: 48% (4957/10327) Updating files: 48% (4993/10327) Updating files: 49% (5061/10327) Updating files: 49% (5149/10327) Updating files: 50% (5164/10327) Updating files: 51% (5267/10327) Updating files: 52% (5371/10327) Updating files: 52% (5394/10327) Updating files: 52% (5453/10327) Updating files: 53% (5474/10327) Updating files: 54% (5577/10327) Updating files: 55% (5680/10327) Updating files: 56% (5784/10327) Updating files: 56% (5813/10327) Updating files: 57% (5887/10327) Updating files: 58% (5990/10327) Updating files: 58% (6003/10327) Updating files: 59% (6093/10327) Updating files: 60% (6197/10327) Updating files: 60% (6284/10327) Updating files: 61% (6300/10327) Updating files: 62% (6403/10327) Updating files: 63% (6507/10327) Updating files: 63% (6597/10327) Updating files: 64% (6610/10327) Updating files: 65% (6713/10327) Updating files: 66% (6816/10327) Updating files: 66% (6837/10327) Updating files: 67% (6920/10327) Updating files: 68% (7023/10327) Updating files: 69% (7126/10327) Updating files: 69% (7226/10327) Updating files: 70% (7229/10327) Updating files: 71% (7333/10327) Updating files: 71% (7405/10327) Updating files: 72% (7436/10327) Updating files: 73% (7539/10327) Updating files: 74% (7642/10327) Updating files: 74% (7723/10327) Updating files: 75% (7746/10327) Updating files: 76% (7849/10327) Updating files: 76% (7854/10327) Updating files: 77% (7952/10327) Updating files: 78% (8056/10327) Updating files: 79% (8159/10327) Updating files: 80% (8262/10327) Updating files: 81% (8365/10327) Updating files: 81% (8389/10327) Updating files: 82% (8469/10327) Updating files: 82% (8482/10327) Updating files: 83% (8572/10327) Updating files: 84% (8675/10327) Updating files: 85% (8778/10327) Updating files: 86% (8882/10327) Updating files: 86% (8952/10327) Updating files: 87% (8985/10327) Updating files: 88% (9088/10327) Updating files: 89% (9192/10327) Updating files: 89% (9199/10327) Updating files: 90% (9295/10327) Updating files: 91% (9398/10327) Updating files: 91% (9415/10327) Updating files: 92% (9501/10327) Updating files: 93% (9605/10327) Updating files: 94% (9708/10327) Updating files: 94% (9727/10327) Updating files: 95% (9811/10327) Updating files: 96% (9914/10327) Updating files: 97% (10018/10327) Updating files: 98% (10121/10327) Updating files: 99% (10224/10327) Updating files: 99% (10251/10327) Updating files: 100% (10327/10327) Updating files: 100% (10327/10327), done. | |
| [32;1m$ export SPACK_ROOT=${PWD}/spack[0;m | |
| [32;1m$ export SPACK_RESOLVED_COMMIT=$(cd "${SPACK_ROOT}" && git rev-parse HEAD)[0;m | |
| [32;1m$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"[0;m | |
| [32;1m$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"[0;m | |
| [32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_RESOLVED_COMMIT=${SPACK_RESOLVED_COMMIT}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P136739/J796662_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ env -0 | sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\|COMMIT\|TAG\)=.\+/p' | xargs -0t spack ${SPACK_EXTRA_FLAGS} configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env[0;m | |
| spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED BLUECONFIGS --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=cornu/clean_headers SPACK_RESOLVED_COMMIT=97d3a39f5b32f383fc093902b97bf2ff02e3c616 GITLAB_PIPELINES_BRANCH=main NEURON_COMMIT=a40e447d3ae4cf1d332c22234a79be974ce54589 NMODL_BRANCH=master LIBSONATA_REPORT_BRANCH=master SPACK_BRANCH=develop CI_DEFAULT_BRANCH=master BLUECONFIGS_BRANCH=main | |
| ==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=cornu/clean_headers | |
| ==> SPACK_RESOLVED: ignoring SPACK_RESOLVED_COMMIT=97d3a39f5b32f383fc093902b97bf2ff02e3c616 | |
| ==> GITLAB_PIPELINES: ignoring GITLAB_PIPELINES_BRANCH=main | |
| ==> SPACK: ignoring SPACK_BRANCH=develop | |
| ==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master | |
| ==> BLUECONFIGS: ignoring BLUECONFIGS_BRANCH=main | |
| ==> nmodl: resolved branch master to 2135b19de96956faf21485a040032b69f8793d56 | |
| ==> libsonata-report: resolved branch master to b95d1c8633282c6bd5358d2511777d399b8c447f | |
| ==> neuron@develop: remove branch/commit/tag | |
| ==> neuron@develop: use commit="a40e447d3ae4cf1d332c22234a79be974ce54589" | |
| ==> neuron@develop: add preferred=True | |
| ==> nmodl@develop: remove branch/commit/tag | |
| ==> nmodl@develop: use commit="2135b19de96956faf21485a040032b69f8793d56" | |
| ==> nmodl@develop: add preferred=True | |
| ==> libsonata-report@develop: remove branch/commit/tag | |
| ==> libsonata-report@develop: use commit="b95d1c8633282c6bd5358d2511777d399b8c447f" | |
| ==> libsonata-report@develop: add preferred=True | |
| [32;1m$ (cd "${SPACK_ROOT}" && git diff)[0;m | |
| diff --git a/bluebrain/repo-bluebrain/packages/libsonata-report/package.py b/bluebrain/repo-bluebrain/packages/libsonata-report/package.py | |
| index 6e7fe956..6b63c942 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/libsonata-report/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/libsonata-report/package.py | |
| @@ -17,7 +17,7 @@ class LibsonataReport(CMakePackage): | |
| homepage = "https://github.com/BlueBrain/libsonatareport" | |
| git = "https://github.com/BlueBrain/libsonatareport.git" | |
| - version("develop", branch="master", submodules=False, get_full_repo=True) | |
| + version('develop', preferred=True, commit='b95d1c8633282c6bd5358d2511777d399b8c447f', submodules=False, get_full_repo=True) # old: branch="master" | |
| version("1.2.1", tag="1.2.1", submodules=False) | |
| version("1.2", tag="1.2", submodules=False) | |
| version("1.1.1", tag="1.1.1", submodules=False) | |
| diff --git a/bluebrain/repo-bluebrain/packages/nmodl/package.py b/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| index 9e0d5583..c0cc4be3 100644 | |
| --- a/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| +++ b/bluebrain/repo-bluebrain/packages/nmodl/package.py | |
| @@ -13,7 +13,7 @@ class Nmodl(CMakePackage): | |
| url = "https://github.com/BlueBrain/nmodl.git" | |
| git = "https://github.com/BlueBrain/nmodl.git" | |
| - version("develop", branch="master", submodules=True) | |
| + version('develop', preferred=True, commit='2135b19de96956faf21485a040032b69f8793d56', submodules=True) # old: branch="master" | |
| version("llvm", branch="llvm", submodules=True) | |
| version("0.7.a1", commit="2ce4a2b91dfcfe6356b6a5003c4e99b8711564ee") | |
| version("0.6.0", tag="0.6") | |
| diff --git a/bluebrain/repo-patches/packages/neuron/package.py b/bluebrain/repo-patches/packages/neuron/package.py | |
| index 3756ccd0..a0de537c 100644 | |
| --- a/bluebrain/repo-patches/packages/neuron/package.py | |
| +++ b/bluebrain/repo-patches/packages/neuron/package.py | |
| @@ -31,7 +31,7 @@ class Neuron(CMakePackage): | |
| # Patch for recent CMake versions that don't identify NVHPC as PGI | |
| patch("patch-v800-cmake-nvhpc.patch", when="@8.0.0%nvhpc^cmake@3.20:") | |
| - version("develop", branch="master") | |
| + version('develop', preferred=True, commit='a40e447d3ae4cf1d332c22234a79be974ce54589') # old: branch="master" | |
| version("9.0.a9", commit="baf3b14") | |
| version("9.0.a8", commit="67a672a") | |
| version("9.0.a5", commit="522c866") | |
| [32;1m$ cat commit-mapping.env[0;m | |
| NEURON_COMMIT=a40e447d3ae4cf1d332c22234a79be974ce54589 | |
| NMODL_COMMIT=2135b19de96956faf21485a040032b69f8793d56 | |
| LIBSONATA_REPORT_COMMIT=b95d1c8633282c6bd5358d2511777d399b8c447f | |
| [32;1m$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env[0;m | |
| [32;1m$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env[0;m | |
| [32;1m$ cat commit-mapping.env >> spack_clone_variables.env[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -IL ninja[0;m | |
| ==> Warning: Expected user 904556 to own /nvme/bbpcihpcproj12, but it is owned by 0 | |
| ==> Bootstrapping clingo from pre-built binaries | |
| ==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-prqkzynv2nwko5mktitebgkeumuxkveu.spec.json | |
| ==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.4/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-prqkzynv2nwko5mktitebgkeumuxkveu.spack | |
| ==> Installing "clingo-bootstrap@spack%gcc@10.2.1~docs~ipo+python+static_libstdcpp build_type=Release arch=linux-centos7-x86_64" from a buildcache | |
| Input spec | |
| -------------------------------- | |
| - ninja | |
| Concretized | |
| -------------------------------- | |
| [^] zk4skoxmkt7do2mk5lgnesas7ol3hhgg ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake | |
| [32;1m$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config --scope site add "config:ccache:true"[0;m | |
| [32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m | |
| [32;1m$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> commit-mapping.env[0;m | |
| [32;1m$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> spack_clone_variables.env[0;m | |
| section_end:1688640182:step_script [0Ksection_start:1688640182:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=98339 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| commit-mapping.env: found 1 matching files and directories[0;m | |
| input_variables.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=796662 responseStatus[0;m=201 Created token[0;m=64_NJz88 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=98365 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=796662 responseStatus[0;m=201 Created token[0;m=64_NJz88 | |
| section_end:1688640185:upload_artifacts_on_success [0Ksection_start:1688640185:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1688640185:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| Log was not fetched because job had status: skipped |
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