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bbpbuildbot/GitLab logs for neuronsimulator-nrn#2909 Secret

Created June 13, 2024 09:35
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/216775 (:no_entry:) running on GitHub PR neuronsimulator/nrn#2909.
Raw
build-neuron-nmodl-intel-legacy.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718269857:resolve_secrets Resolving secrets
section_end:1718269857:resolve_secrets section_start:1718269857:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3566726270, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 216775, build ref , job ID 1318263
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1318263_PROD_P2160_CP0_C0
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2249753
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1318263_PROD_P2160_CP0_C0 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --ntasks=2 --jobid=2249753 --cpus-per-task=8 --mem=160G
section_end:1718269858:prepare_executor section_start:1718269858:prepare_script Preparing environment
Using git from spack modules
Running on r1i6n17 via bbpv1.epfl.ch...
section_end:1718269861:prepare_script section_start:1718269861:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718269862:get_sources section_start:1718269862:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=182893 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1718269871:restore_cache section_start:1718269871:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1318262)...
Runtime platform  arch=amd64 os=linux pid=183019 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1318262 responseStatus=200 OK token=glcbt-64
section_end:1718269872:download_artifacts section_start:1718269872:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775/J1318263_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/d3mdhq7gjxncmj42lvxjtytypcjqpwmf
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2249753/ccache
Config file: /nvme/bbpcihpcproj12/2249753/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Thu Jun 13 11:11:20 2024
Local storage:
Cache size (GB): 0.46 / 0.51 (89.66%)
Files: 10269
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/d3mdhq7gjxncmj42lvxjtytypcjqpwmf
Concretized
--------------------------------
- xobabiv neuron@git.dbfe86634a09cf2329eea04707f711237ed86e76=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- fz3oxtc ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] d3mdhq7 ^nmodl@git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb_develop-d3mdhq
==> Installing neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76=develop-xobabiva46hmy7wgk36brm7z2ad74bre [49/49]
==> No binary for neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76=develop-xobabiva46hmy7wgk36brm7z2ad74bre found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
105 errors found in build log:
2757 [ 35%] Built target coreneuron-for-tests
2758 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318263/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-xobabiva46hmy7wgk36brm7z2ad74bre/spack-bu
ild-xobabiv/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak
e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P216775/J1318263/spack-build/spack-stage-neuron-git.dbfe866
34a09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7wgk36brm7z
2ad74bre/spack-build-xobabiv/bin/nrnivmodl-core -b STATIC -m /gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/i
nstall_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0df7
082f7ea5cb_develop-d3mdhq/bin/nmodl -n internal -p 4 .
2759 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P216775/J1318263/spack-build/spack-stage-neuron
-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-xobabiva46hm
y7wgk36brm7z2ad74bre/spack-build-xobabiv/bin', compiling default o
nes only!
2760 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318263/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7wg
k36brm7z2ad74bre/spack-build-xobabiv/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P216775/J1318263/spack-build/spack-stage-neuron-git.dbfe86634a
09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7wgk36brm7z2ad
74bre/spack-build-xobabiv MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software
/install_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0d
f7082f7ea5cb_develop-d3mdhq/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
2761 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P216775/J1318263/spack-build/spack-stage-neuron-gi
t.dbfe86634a09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7w
gk36brm7z2ad74bre/spack-build-xobabiv/bin'
2762 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2763 make[3]: xcrun: No such file or directory
2764 Default NMODL flags:
>> 2765 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
2766 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2767 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2768 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2769 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
2770 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318263/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7wg
k36brm7z2ad74bre/spack-build-xobabiv'
2771 [ 35%] Built target nrnpython
...
3364 [ 44%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/n
rnoc/intfire1.cpp.o
3365 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318263/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-xobabiva46hmy7wgk36brm7z2ad74bre/spack-bu
ild-xobabiv/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318260/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-build/spack-st
age-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-xo
babiva46hmy7wgk36brm7z2ad74bre/spack-build-xobabiv/include -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318263/s
pack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71123
7ed86e76_develop-xobabiva46hmy7wgk36brm7z2ad74bre/spack-src/src/iv
oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/
J1318263/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0
4707f711237ed86e76_develop-xobabiva46hmy7wgk36brm7z2ad74bre/spack-
src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P216775/J1318263/spack-build/spack-stage-neuron-git.dbfe8663
4a09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7wgk36brm7z2
ad74bre/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P216775/J1318263/spack-build/spack-stage-neuron-g
it.dbfe86634a09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7
wgk36brm7z2ad74bre/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-build/spack-sta
ge-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-xob
abiva46hmy7wgk36brm7z2ad74bre/spack-src/src/oc -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-build/s
pack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_dev
elop-xobabiva46hmy7wgk36brm7z2ad74bre/spack-build-xobabiv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318263/sp
ack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237
ed86e76_develop-xobabiva46hmy7wgk36brm7z2ad74bre/spack-build-xobab
iv/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr
oj12/P216775/J1318263/spack-build/spack-stage-neuron-git.dbfe86634
a09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7wgk36brm7z2a
d74bre/spack-build-xobabiv/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitla
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ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
/J1318263/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea
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gk36brm7z2ad74bre/spack-build-xobabiv/src/nrnoc/intfire2.cpp
3368 [ 44%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/n
rnoc/intfire4.cpp.o
3369 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318263/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
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cihpcproj12/P216775/J1318260/spack/lib/spack/env/oneapi/icpx -DCOR
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D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-build/spack-st
age-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-xo
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pack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71123
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J1318263/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0
4707f711237ed86e76_develop-xobabiva46hmy7wgk36brm7z2ad74bre/spack-
src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
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pack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_dev
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a09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7wgk36brm7z2a
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k-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed
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/J1318263/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea
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bpcihpcproj12/P216775/J1318263/spack-build/spack-stage-neuron-git.
dbfe86634a09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7wgk
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/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-build/spack
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-xobabiv/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P216775/J1318263/spack-build/spack-stage-neur
on-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-xobabiva46
hmy7wgk36brm7z2ad74bre/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-build/spack-
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xobabiva46hmy7wgk36brm7z2ad74bre/spack-src/src/nrnpython/.. -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318263/
spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f7112
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09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7wgk36brm7z2ad
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lab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-build/spack-sta
ge-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-xob
abiva46hmy7wgk36brm7z2ad74bre/spack-src/src/nrnpython/../ivoc -I/g
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3/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
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/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P216775/J1318263/spack-build/spack-stage-neuron-git.dbfe8
6634a09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7wgk36brm
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sd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-build/spa
ck-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_devel
op-xobabiva46hmy7wgk36brm7z2ad74bre/spack-src/src/nrnpython/../ivo
s -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/inst
all_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python3.11 -is
ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
/J1318263/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea
04707f711237ed86e76_develop-xobabiva46hmy7wgk36brm7z2ad74bre/spack
-src/external/eigen -march=skylake -mtune=skylake -fopenmp-simd -g
-O1 -fp-model precise -std=c++17 -fPIC -pthread -MD -MT src/nrni
v/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.o -MF CMakeFiles/
nrniv_lib.dir/__/nrnoc/intfire4.cpp.o.d -o CMakeFiles/nrniv_lib.di
r/__/nrnoc/intfire4.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P216775/J1318263/spack-build/spack-stage-neuron-gi
t.dbfe86634a09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7w
gk36brm7z2ad74bre/spack-build-xobabiv/src/nrnoc/intfire4.cpp
>> 3370 ../nrnoc/apcount.cpp:286:34: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3371 if (gind) { _globals = _thread[_gth].get<double*>(); }
3372 ^~~~
3373 _nt
3374 ../nrnoc/apcount.cpp:274:44: note: '_nt' declared here
3375 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3376 ^
>> 3377 ../nrnoc/apcount.cpp:286:33: error: array subscript is not an inte
ger
3378 if (gind) { _globals = _thread[_gth].get<double*>(); }
3379 ^~~~~
>> 3380 ../nrnoc/apcount.cpp:317:34: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3381 if (gind) { _globals = _thread[_gth].get<double*>(); }
3382 ^~~~
3383 _nt
3384 ../nrnoc/apcount.cpp:305:44: note: '_nt' declared here
3385 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3386 ^
>> 3387 ../nrnoc/apcount.cpp:317:33: error: array subscript is not an inte
ger
3388 if (gind) { _globals = _thread[_gth].get<double*>(); }
3389 ^~~~~
>> 3390 ../nrnoc/apcount.cpp:350:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3391 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3392 ^~~~
3393 _nt
3394 ../nrnoc/apcount.cpp:340:79: note: '_nt' declared here
3395 static void nrn_init(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type){
3396
^
>> 3397 ../nrnoc/apcount.cpp:350:36: error: array subscript is not an inte
ger
3398 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3399 ^~~~~
>> 3400 ../nrnoc/apcount.cpp:377:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3401 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3402 ^~~~
3403 _nt
3404 ../nrnoc/apcount.cpp:365:78: note: '_nt' declared here
3405 static void nrn_cur(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3406
^
>> 3407 ../nrnoc/apcount.cpp:377:36: error: array subscript is not an inte
ger
3408 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3409 ^~~~~
>> 3410 ../nrnoc/apcount.cpp:397:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3411 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3412 ^~~~
3413 _nt
3414 ../nrnoc/apcount.cpp:386:80: note: '_nt' declared here
3415 static void nrn_jacob(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3416
^
>> 3417 ../nrnoc/apcount.cpp:397:36: error: array subscript is not an inte
ger
3418 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3419 ^~~~~
>> 3420 ../nrnoc/apcount.cpp:415:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3421 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3422 ^~~~
3423 _nt
3424 ../nrnoc/apcount.cpp:405:80: note: '_nt' declared here
3425 static void nrn_state(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3426
^
>> 3427 ../nrnoc/apcount.cpp:415:36: error: array subscript is not an inte
ger
3428 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3429 ^~~~~
3430 12 errors generated.
>> 3431 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2511:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/apcount.cpp.o] Error 1
3432 make[2]: *** Waiting for unfinished jobs....
>> 3433 ../nrnoc/exp2syn.cpp:360:39: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3434 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3435 ^~~~
3436 _nt
3437 ../nrnoc/exp2syn.cpp:350:80: note: '_nt' declared here
3438 static void _ode_spec(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3439
^
>> 3440 ../nrnoc/exp2syn.cpp:360:38: error: array subscript is not an inte
ger
3441 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3442 ^~~~~
>> 3443 ../nrnoc/exp2syn.cpp:393:39: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3444 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3445 ^~~~
3446 _nt
3447 ../nrnoc/exp2syn.cpp:383:82: note: '_nt' declared here
3448 static void _ode_matsol(_nrn_model_sorted_token const& _sorted_tok
en, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3449
^
>> 3450 ../nrnoc/exp2syn.cpp:393:38: error: array subscript is not an inte
ger
3451 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3452 ^~~~~
>> 3453 ../nrnoc/exp2syn.cpp:433:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3454 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3455 ^~~~
3456 _nt
3457 ../nrnoc/exp2syn.cpp:423:79: note: '_nt' declared here
3458 static void nrn_init(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type){
3459
^
>> 3460 ../nrnoc/exp2syn.cpp:433:36: error: array subscript is not an inte
ger
3461 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3462 ^~~~~
>> 3463 ../nrnoc/exp2syn.cpp:466:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3464 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3465 ^~~~
3466 _nt
3467 ../nrnoc/exp2syn.cpp:454:78: note: '_nt' declared here
3468 static void nrn_cur(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3469
^
>> 3470 ../nrnoc/exp2syn.cpp:466:36: error: array subscript is not an inte
ger
3471 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3472 ^~~~~
>> 3473 ../nrnoc/exp2syn.cpp:493:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3474 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3475 ^~~~
3476 _nt
3477 ../nrnoc/exp2syn.cpp:482:80: note: '_nt' declared here
3478 static void nrn_jacob(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3479
^
>> 3480 ../nrnoc/exp2syn.cpp:493:36: error: array subscript is not an inte
ger
3481 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3482 ^~~~~
>> 3483 ../nrnoc/exp2syn.cpp:511:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3484 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3485 ^~~~
3486 _nt
3487 ../nrnoc/exp2syn.cpp:501:80: note: '_nt' declared here
3488 static void nrn_state(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3489
^
>> 3490 ../nrnoc/exp2syn.cpp:511:36: error: array subscript is not an inte
ger
3491 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3492 ^~~~~
3493 12 errors generated.
>> 3494 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2525:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/exp2syn.cpp.o] Error 1
>> 3495 ../nrnoc/expsyn.cpp:323:39: error: use of undeclared identifier '_
gth'; did you mean '_nt'?
3496 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3497 ^~~~
3498 _nt
3499 ../nrnoc/expsyn.cpp:313:80: note: '_nt' declared here
3500 static void _ode_spec(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3501
^
>> 3502 ../nrnoc/expsyn.cpp:323:38: error: array subscript is not an integ
er
3503 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3504 ^~~~~
>> 3505 ../nrnoc/expsyn.cpp:356:39: error: use of undeclared identifier '_
gth'; did you mean '_nt'?
3506 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3507 ^~~~
3508 _nt
3509 ../nrnoc/expsyn.cpp:346:82: note: '_nt' declared here
3510 static void _ode_matsol(_nrn_model_sorted_token const& _sorted_tok
en, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3511
^
>> 3512 ../nrnoc/expsyn.cpp:356:38: error: array subscript is not an integ
er
3513 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3514 ^~~~~
>> 3515 ../nrnoc/expsyn.cpp:384:37: error: use of undeclared identifier '_
gth'; did you mean '_nt'?
3516 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3517 ^~~~
3518 _nt
3519 ../nrnoc/expsyn.cpp:374:79: note: '_nt' declared here
3520 static void nrn_init(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type){
3521
^
>> 3522 ../nrnoc/expsyn.cpp:384:36: error: array subscript is not an integ
er
3523 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3524 ^~~~~
>> 3525 ../nrnoc/expsyn.cpp:416:37: error: use of undeclared identifier '_
gth'; did you mean '_nt'?
3526 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3527 ^~~~
3528 _nt
3529 ../nrnoc/expsyn.cpp:404:78: note: '_nt' declared here
3530 static void nrn_cur(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3531
^
>> 3532 ../nrnoc/expsyn.cpp:416:36: error: array subscript is not an integ
er
3533 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3534 ^~~~~
>> 3535 ../nrnoc/expsyn.cpp:443:37: error: use of undeclared identifier '_
gth'; did you mean '_nt'?
3536 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3537 ^~~~
3538 _nt
3539 ../nrnoc/expsyn.cpp:432:80: note: '_nt' declared here
3540 static void nrn_jacob(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3541
^
>> 3542 ../nrnoc/expsyn.cpp:443:36: error: array subscript is not an integ
er
3543 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3544 ^~~~~
>> 3545 ../nrnoc/expsyn.cpp:461:37: error: use of undeclared identifier '_
gth'; did you mean '_nt'?
3546 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3547 ^~~~
3548 _nt
3549 ../nrnoc/expsyn.cpp:451:80: note: '_nt' declared here
3550 static void nrn_state(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3551
^
>> 3552 ../nrnoc/expsyn.cpp:461:36: error: array subscript is not an integ
er
3553 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3554 ^~~~~
3555 12 errors generated.
>> 3556 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2539:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/expsyn.cpp.o] Error 1
>> 3557 ../nrnoc/hh.cpp:438:32: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3558 if (gind) { _globals = _thread[_gth].get<double*>(); }
3559 ^~~~
3560 _nt
3561 ../nrnoc/hh.cpp:426:44: note: '_nt' declared here
3562 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3563 ^
>> 3564 ../nrnoc/hh.cpp:438:31: error: array subscript is not an integer
3565 if (gind) { _globals = _thread[_gth].get<double*>(); }
3566 ^~~~~
>> 3567 ../nrnoc/hh.cpp:454:32: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3568 if (gind) { _globals = _thread[_gth].get<double*>(); }
3569 ^~~~
3570 _nt
3571 ../nrnoc/hh.cpp:447:44: note: '_nt' declared here
3572 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3573 ^
>> 3574 ../nrnoc/hh.cpp:454:31: error: array subscript is not an integer
3575 if (gind) { _globals = _thread[_gth].get<double*>(); }
3576 ^~~~~
>> 3577 ../nrnoc/hh.cpp:484:32: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3578 if (gind) { _globals = _thread[_gth].get<double*>(); }
3579 ^~~~
3580 _nt
3581 ../nrnoc/hh.cpp:475:44: note: '_nt' declared here
3582 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3583 ^
>> 3584 ../nrnoc/hh.cpp:484:31: error: array subscript is not an integer
3585 if (gind) { _globals = _thread[_gth].get<double*>(); }
3586 ^~~~~
>> 3587 ../nrnoc/hh.cpp:499:32: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3588 if (gind) { _globals = _thread[_gth].get<double*>(); }
3589 ^~~~
3590 _nt
3591 ../nrnoc/hh.cpp:492:44: note: '_nt' declared here
3592 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3593 ^
>> 3594 ../nrnoc/hh.cpp:499:31: error: array subscript is not an integer
3595 if (gind) { _globals = _thread[_gth].get<double*>(); }
3596 ^~~~~
>> 3597 ../nrnoc/hh.cpp:517:39: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3598 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3599 ^~~~
3600 _nt
3601 ../nrnoc/hh.cpp:507:80: note: '_nt' declared here
3602 static void _ode_spec(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3603
^
>> 3604 ../nrnoc/hh.cpp:517:38: error: array subscript is not an integer
3605 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3606 ^~~~~
>> 3607 ../nrnoc/hh.cpp:552:39: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3608 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3609 ^~~~
3610 _nt
3611 ../nrnoc/hh.cpp:542:82: note: '_nt' declared here
3612 static void _ode_matsol(_nrn_model_sorted_token const& _sorted_tok
en, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3613
^
>> 3614 ../nrnoc/hh.cpp:552:38: error: array subscript is not an integer
3615 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3616 ^~~~~
>> 3617 ../nrnoc/hh.cpp:587:37: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3618 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3619 ^~~~
3620 _nt
3621 ../nrnoc/hh.cpp:577:79: note: '_nt' declared here
3622 static void nrn_init(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type){
3623
^
>> 3624 ../nrnoc/hh.cpp:587:36: error: array subscript is not an integer
3625 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3626 ^~~~~
>> 3627 ../nrnoc/hh.cpp:626:37: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3628 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3629 ^~~~
3630 _nt
3631 ../nrnoc/hh.cpp:614:78: note: '_nt' declared here
3632 static void nrn_cur(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3633
^
>> 3634 ../nrnoc/hh.cpp:626:36: error: array subscript is not an integer
3635 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3636 ^~~~~
>> 3637 ../nrnoc/hh.cpp:661:37: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3638 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3639 ^~~~
3640 _nt
3641 ../nrnoc/hh.cpp:650:80: note: '_nt' declared here
3642 static void nrn_jacob(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3643
^
>> 3644 ../nrnoc/hh.cpp:661:36: error: array subscript is not an integer
3645 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3646 ^~~~~
>> 3647 ../nrnoc/hh.cpp:679:37: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3648 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3649 ^~~~
3650 _nt
3651 ../nrnoc/hh.cpp:669:80: note: '_nt' declared here
3652 static void nrn_state(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3653
^
3654 fatal error: too many errors emitted, stopping now [-ferror-limit=
]
3655 20 errors generated.
>> 3656 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2567:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/hh.cpp.o] Error 1
>> 3657 ../nrnoc/intfire1.cpp:282:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3658 if (gind) { _globals = _thread[_gth].get<double*>(); }
3659 ^~~~
3660 _nt
3661 ../nrnoc/intfire1.cpp:270:44: note: '_nt' declared here
3662 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3663 ^
>> 3664 ../nrnoc/intfire1.cpp:282:33: error: array subscript is not an int
eger
3665 if (gind) { _globals = _thread[_gth].get<double*>(); }
3666 ^~~~~
>> 3667 ../nrnoc/intfire1.cpp:336:37: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3668 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3669 ^~~~
3670 _nt
3671 ../nrnoc/intfire1.cpp:326:79: note: '_nt' declared here
3672 static void nrn_init(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type){
3673
^
>> 3674 ../nrnoc/intfire1.cpp:336:36: error: array subscript is not an int
eger
3675 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3676 ^~~~~
>> 3677 ../nrnoc/intfire1.cpp:360:37: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3678 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3679 ^~~~
3680 _nt
3681 ../nrnoc/intfire1.cpp:350:80: note: '_nt' declared here
3682 static void nrn_state(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3683
^
>> 3684 ../nrnoc/intfire1.cpp:360:36: error: array subscript is not an int
eger
3685 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3686 ^~~~~
3687 6 errors generated.
>> 3688 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2581:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire1.cpp.o] Error
1
>> 3689 ../nrnoc/intfire2.cpp:294:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3690 if (gind) { _globals = _thread[_gth].get<double*>(); }
3691 ^~~~
3692 _nt
3693 ../nrnoc/intfire2.cpp:282:44: note: '_nt' declared here
3694 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3695 ^
>> 3696 ../nrnoc/intfire2.cpp:294:33: error: array subscript is not an int
eger
3697 if (gind) { _globals = _thread[_gth].get<double*>(); }
3698 ^~~~~
>> 3699 ../nrnoc/intfire2.cpp:324:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3700 if (gind) { _globals = _thread[_gth].get<double*>(); }
3701 ^~~~
3702 _nt
3703 ../nrnoc/intfire2.cpp:312:44: note: '_nt' declared here
3704 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3705 ^
>> 3706 ../nrnoc/intfire2.cpp:324:33: error: array subscript is not an int
eger
3707 if (gind) { _globals = _thread[_gth].get<double*>(); }
3708 ^~~~~
>> 3709 ../nrnoc/intfire2.cpp:347:63: error: use of undeclared identifier
'_globals'
3710 artcell_net_send ( _tqitem, _args, _pnt, t + firetime ( _thr
eadargscomma_ ib , _libf , 0.0 ) , 1.0 ) ;
3711 ^
3712 ../nrnoc/intfire2.cpp:48:55: note: expanded from macro '_threadarg
scomma_'
3713 #define _threadargscomma_ _ml, _iml, _ppvar, _thread, _globals, _n
t,
3714 ^
>> 3715 ../nrnoc/intfire2.cpp:357:53: error: use of undeclared identifier
'_globals'
3716 artcell_net_move ( _tqitem, _pnt, firetime ( _threadargscom
ma_ ib , _libf , m ) + t ) ;
3717 ^
3718 ../nrnoc/intfire2.cpp:48:55: note: expanded from macro '_threadarg
scomma_'
3719 #define _threadargscomma_ _ml, _iml, _ppvar, _thread, _globals, _n
t,
3720 ^
>> 3721 ../nrnoc/intfire2.cpp:418:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3722 if (gind) { _globals = _thread[_gth].get<double*>(); }
3723 ^~~~
3724 _nt
3725 ../nrnoc/intfire2.cpp:406:44: note: '_nt' declared here
3726 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3727 ^
>> 3728 ../nrnoc/intfire2.cpp:418:33: error: array subscript is not an int
eger
3729 if (gind) { _globals = _thread[_gth].get<double*>(); }
3730 ^~~~~
>> 3731 ../nrnoc/intfire2.cpp:472:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3732 if (gind) { _globals = _thread[_gth].get<double*>(); }
3733 ^~~~
3734 _nt
3735 ../nrnoc/intfire2.cpp:460:44: note: '_nt' declared here
3736 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3737 ^
>> 3738 ../nrnoc/intfire2.cpp:472:33: error: array subscript is not an int
eger
3739 if (gind) { _globals = _thread[_gth].get<double*>(); }
3740 ^~~~~
>> 3741 ../nrnoc/intfire2.cpp:503:37: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3742 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3743 ^~~~
3744 _nt
3745 ../nrnoc/intfire2.cpp:493:79: note: '_nt' declared here
3746 static void nrn_init(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type){
3747
^
>> 3748 ../nrnoc/intfire2.cpp:503:36: error: array subscript is not an int
eger
3749 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3750 ^~~~~
>> 3751 ../nrnoc/intfire2.cpp:527:37: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3752 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3753 ^~~~
3754 _nt
3755 ../nrnoc/intfire2.cpp:517:80: note: '_nt' declared here
3756 static void nrn_state(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3757
^
>> 3758 ../nrnoc/intfire2.cpp:527:36: error: array subscript is not an int
eger
3759 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3760 ^~~~~
3761 14 errors generated.
>> 3762 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2595:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o] Error
1
>> 3763 ../nrnoc/intfire4.cpp:425:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3764 if (gind) { _globals = _thread[_gth].get<double*>(); }
3765 ^~~~
3766 _nt
3767 ../nrnoc/intfire4.cpp:413:44: note: '_nt' declared here
3768 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3769 ^
>> 3770 ../nrnoc/intfire4.cpp:425:33: error: array subscript is not an int
eger
3771 if (gind) { _globals = _thread[_gth].get<double*>(); }
3772 ^~~~~
>> 3773 ../nrnoc/intfire4.cpp:454:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3774 if (gind) { _globals = _thread[_gth].get<double*>(); }
3775 ^~~~
3776 _nt
3777 ../nrnoc/intfire4.cpp:442:44: note: '_nt' declared here
3778 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3779 ^
>> 3780 ../nrnoc/intfire4.cpp:454:33: error: array subscript is not an int
eger
3781 if (gind) { _globals = _thread[_gth].get<double*>(); }
3782 ^~~~~
>> 3783 ../nrnoc/intfire4.cpp:482:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3784 if (gind) { _globals = _thread[_gth].get<double*>(); }
3785 ^~~~
3786 _nt
3787 ../nrnoc/intfire4.cpp:470:44: note: '_nt' declared here
3788 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3789 ^
>> 3790 ../nrnoc/intfire4.cpp:482:33: error: array subscript is not an int
eger
3791 if (gind) { _globals = _thread[_gth].get<double*>(); }
3792 ^~~~~
>> 3793 ../nrnoc/intfire4.cpp:510:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3794 if (gind) { _globals = _thread[_gth].get<double*>(); }
3795 ^~~~
3796 _nt
3797 ../nrnoc/intfire4.cpp:498:44: note: '_nt' declared here
3798 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3799 ^
>> 3800 ../nrnoc/intfire4.cpp:510:33: error: array subscript is not an int
eger
3801 if (gind) { _globals = _thread[_gth].get<double*>(); }
3802 ^~~~~
>> 3803 ../nrnoc/intfire4.cpp:538:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3804 if (gind) { _globals = _thread[_gth].get<double*>(); }
3805 ^~~~
3806 _nt
3807 ../nrnoc/intfire4.cpp:526:44: note: '_nt' declared here
3808 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3809 ^
>> 3810 ../nrnoc/intfire4.cpp:538:33: error: array subscript is not an int
eger
3811 if (gind) { _globals = _thread[_gth].get<double*>(); }
3812 ^~~~~
>> 3813 ../nrnoc/intfire4.cpp:618:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3814 if (gind) { _globals = _thread[_gth].get<double*>(); }
3815 ^~~~
3816 _nt
3817 ../nrnoc/intfire4.cpp:606:44: note: '_nt' declared here
3818 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3819 ^
>> 3820 ../nrnoc/intfire4.cpp:618:33: error: array subscript is not an int
eger
3821 if (gind) { _globals = _thread[_gth].get<double*>(); }
3822 ^~~~~
>> 3823 ../nrnoc/intfire4.cpp:669:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3824 if (gind) { _globals = _thread[_gth].get<double*>(); }
3825 ^~~~
3826 _nt
3827 ../nrnoc/intfire4.cpp:657:44: note: '_nt' declared here
3828 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3829 ^
>> 3830 ../nrnoc/intfire4.cpp:669:33: error: array subscript is not an int
eger
3831 if (gind) { _globals = _thread[_gth].get<double*>(); }
3832 ^~~~~
>> 3833 ../nrnoc/intfire4.cpp:697:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3834 if (gind) { _globals = _thread[_gth].get<double*>(); }
3835 ^~~~
3836 _nt
3837 ../nrnoc/intfire4.cpp:685:44: note: '_nt' declared here
3838 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3839 ^
>> 3840 ../nrnoc/intfire4.cpp:697:33: error: array subscript is not an int
eger
3841 if (gind) { _globals = _thread[_gth].get<double*>(); }
3842 ^~~~~
>> 3843 ../nrnoc/intfire4.cpp:759:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3844 if (gind) { _globals = _thread[_gth].get<double*>(); }
3845 ^~~~
3846 _nt
3847 ../nrnoc/intfire4.cpp:747:44: note: '_nt' declared here
3848 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3849 ^
>> 3850 ../nrnoc/intfire4.cpp:759:33: error: array subscript is not an int
eger
3851 if (gind) { _globals = _thread[_gth].get<double*>(); }
3852 ^~~~~
>> 3853 ../nrnoc/intfire4.cpp:774:16: error: use of undeclared identifier
'_globals'
3854 newstates ( _threadargscomma_ t - t0 ) ;
3855 ^
3856 ../nrnoc/intfire4.cpp:52:55: note: expanded from macro '_threadarg
scomma_'
3857 #define _threadargscomma_ _ml, _iml, _ppvar, _thread, _globals, _n
t,
3858 ^
3859 fatal error: too many errors emitted, stopping now [-ferror-limit=
]
3860 20 errors generated.
>> 3861 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2609:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.o] Error
1
3862 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318263/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7wg
k36brm7z2ad74bre/spack-build-xobabiv'
>> 3863 make[1]: *** [CMakeFiles/Makefile2:2691: src/nrniv/CMakeFiles/nrni
v_lib.dir/all] Error 2
3864 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318263/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7wg
k36brm7z2ad74bre/spack-build-xobabiv'
>> 3865 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318263/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-xobabiva46hmy7wgk36brm7z2ad74bre/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i6n17: task 0: Exited with exit code 1
section_end:1718270227:step_script section_start:1718270227:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=191276 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1318263 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=191318 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1318263 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=191362 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1318263 responseStatus=201 Created token=glcbt-64
section_end:1718270230:upload_artifacts_on_failure section_start:1718270230:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718270231:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-intel-shared.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718269857:resolve_secrets Resolving secrets
section_end:1718269857:resolve_secrets section_start:1718269857:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1410982693, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 216775, build ref , job ID 1318264
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1318264_PROD_P2160_CP1_C2
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2249754
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1318264_PROD_P2160_CP1_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --ntasks=2 --jobid=2249754 --cpus-per-task=8 --mem=160G
section_end:1718269861:prepare_executor section_start:1718269861:prepare_script Preparing environment
Using git from spack modules
Running on r1i4n30 via bbpv1.epfl.ch...
section_end:1718269864:prepare_script section_start:1718269864:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718269865:get_sources section_start:1718269865:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:shared-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=210277 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1718269874:restore_cache section_start:1718269874:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1318262)...
Runtime platform  arch=amd64 os=linux pid=210391 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1318262 responseStatus=200 OK token=glcbt-64
section_end:1718269875:download_artifacts section_start:1718269875:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775/J1318264_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/d3mdhq7gjxncmj42lvxjtytypcjqpwmf
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2249754/ccache
Config file: /nvme/bbpcihpcproj12/2249754/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Thu Jun 13 11:11:22 2024
Local storage:
Cache size (GB): 0.46 / 0.51 (89.08%)
Files: 9766
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/d3mdhq7gjxncmj42lvxjtytypcjqpwmf
Concretized
--------------------------------
- pkci54k neuron@git.dbfe86634a09cf2329eea04707f711237ed86e76=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- fz3oxtc ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] d3mdhq7 ^nmodl@git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul [43/49]
==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul
Stage: 2.46s. Cmake: 5.15s. Build: 1.69s. Install: 0.11s. Post-install: 0.10s. Total: 9.70s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb_develop-d3mdhq
==> Installing neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76=develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk [49/49]
==> No binary for neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76=develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
105 errors found in build log:
2782 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bi
n/cmake -E env MODLUNIT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-git.dbf
e86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6
nkptd3rkqoyk/spack-build-pkci54k/share/nrn/lib/nrnunits.lib /gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/sp
ack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237
ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-build-pkci5
4k/bin/nocmodl /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09
cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkq
oyk/spack-src/src/nrnoc/intfire1.mod
2783 [ 34%] Generating ../nrnoc/intfire2.cpp
2784 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bi
n/cmake -E env MODLUNIT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-git.dbf
e86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6
nkptd3rkqoyk/spack-build-pkci54k/share/nrn/lib/nrnunits.lib /gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/sp
ack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237
ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-build-pkci5
4k/bin/nocmodl /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj1
2/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09
cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkq
oyk/spack-src/src/nrnoc/intfire2.mod
2785 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn
6tp6nkptd3rkqoyk/spack-build-pkci54k/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a
09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3r
kqoyk/spack-build-pkci54k MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software
/install_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0d
f7082f7ea5cb_develop-d3mdhq/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
2786 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-gi
t.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgs
n6tp6nkptd3rkqoyk/spack-build-pkci54k/bin'
2787 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2788 make[3]: xcrun: No such file or directory
2789 Default NMODL flags:
2790 Translating /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2
329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk
/spack-src/src/nrnoc/apcount.mod into /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-
neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54
k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnoc/apcount.cpp
2791 Thread Safe
2792 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && sed 's/_reg()/_reg_()/' /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/s
pack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_dev
elop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnoc/apcount.
cpp > /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea
04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack
-build-pkci54k/src/nrnoc/apcount.cpp
2793 Translating /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2
329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk
/spack-src/src/nrnoc/exp2syn.mod into /gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-
neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54
k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnoc/exp2syn.cpp
2794 Translating /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2
329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk
/spack-src/src/nrnoc/expsyn.mod into /gpfs/bbp.cscs.ch/ssd/gitlab_
map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-n
euron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k
7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnoc/expsyn.cpp
...
2807 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && sed 's/_reg()/_reg_()/' /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/s
pack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_dev
elop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnoc/intfire1
.cpp > /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21677
5/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329ee
a04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spac
k-build-pkci54k/src/nrnoc/intfire1.cpp
2808 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bi
n/cmake -E rm /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09c
f2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqo
yk/spack-src/src/nrnoc/apcount.cpp
2809 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bi
n/cmake -E rm /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09c
f2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqo
yk/spack-src/src/nrnoc/exp2syn.cpp
2810 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bi
n/cmake -E rm /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09c
f2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqo
yk/spack-src/src/nrnoc/hh.cpp
2811 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bi
n/cmake -E rm /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09c
f2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqo
yk/spack-src/src/nrnoc/expsyn.cpp
2812 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bi
n/cmake -E rm /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09c
f2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqo
yk/spack-src/src/nrnoc/feature.cpp
>> 2813 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
2814 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bi
n/cmake -E rm /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09c
f2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqo
yk/spack-src/src/nrnoc/intfire1.cpp
2815 Translating /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P
216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2
329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk
/spack-src/src/nrnoc/intfire2.mod into /gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage
-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci5
4k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnoc/intfire2.cpp
2816 Thread Safe
2817 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && sed 's/_reg()/_reg_()/' /gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/s
pack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_dev
elop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnoc/intfire2
.cpp > /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21677
5/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329ee
a04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spac
k-build-pkci54k/src/nrnoc/intfire2.cpp
2818 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bi
n/cmake -E rm /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12
/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09c
f2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqo
yk/spack-src/src/nrnoc/intfire2.cpp
2819 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
...
3371 [ 43%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/n
rnoc/intfire1.cpp.o
3372 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318260/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-st
age-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pk
ci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-build-pkci54k/include -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/s
pack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71123
7ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/iv
oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/
J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0
4707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-
src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe8663
4a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd
3rkqoyk/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-g
it.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhg
sn6tp6nkptd3rkqoyk/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-sta
ge-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkc
i54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/oc -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/s
pack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_dev
elop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-build-pkci54k -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/sp
ack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237
ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-build-pkci5
4k/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr
oj12/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634
a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3
rkqoyk/spack-build-pkci54k/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage
-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci5
4k7si4yhgsn6tp6nkptd3rkqoyk/spack-build-pkci54k/src/nrnpython -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
4/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
1237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-build-p
kci54k/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a0
9cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rk
qoyk/spack-build-pkci54k/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stag
e-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci
54k7si4yhgsn6tp6nkptd3rkqoyk/spack-build-pkci54k/src/sundials -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
4/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
1237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-build-p
kci54k/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-gi
t.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgs
n6tp6nkptd3rkqoyk/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neur
on-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si
4yhgsn6tp6nkptd3rkqoyk/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-s
tage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-p
kci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnmpi -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-b
uild/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e
76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnpytho
n -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J
1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04
707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-s
rc/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr
oj12/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634
a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3
rkqoyk/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron
-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4y
hgsn6tp6nkptd3rkqoyk/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-
stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-
pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/sparse13 -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spac
k-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed
86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/sundi
als -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea
04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack
-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-git.
dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6
tp6nkptd3rkqoyk/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack
-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop
-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/sundials/shared -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318
264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f
711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-build
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gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-
stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-
pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnpython/.. -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/
spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f7112
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kqoyk/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-sta
ge-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkc
i54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnpython/../ivoc -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
4/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
1237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src
/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe8
6634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nk
ptd3rkqoyk/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spa
ck-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_devel
op-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnpython/../ivo
s -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/inst
all_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python3.11 -is
ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea
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r/__/nrnoc/intfire1.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-gi
t.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgs
n6tp6nkptd3rkqoyk/spack-build-pkci54k/src/nrnoc/intfire1.cpp
3373 [ 43%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/n
rnoc/intfire2.cpp.o
3374 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318260/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-st
age-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pk
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/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/s
pack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71123
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oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/
J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0
4707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-
src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe8663
4a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd
3rkqoyk/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-g
it.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhg
sn6tp6nkptd3rkqoyk/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-sta
ge-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkc
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/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/s
pack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_dev
elop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-build-pkci54k -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/sp
ack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237
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oj12/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634
a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3
rkqoyk/spack-build-pkci54k/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage
-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci5
4k7si4yhgsn6tp6nkptd3rkqoyk/spack-build-pkci54k/src/nrnpython -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
4/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
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pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
4/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
1237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-build-p
kci54k/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-gi
t.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgs
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_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neur
on-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si
4yhgsn6tp6nkptd3rkqoyk/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-s
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n -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J
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p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spac
k-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed
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als -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
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/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318
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pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnpython/.. -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/
spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f7112
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kqoyk/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-sta
ge-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkc
i54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnpython/../ivoc -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
4/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
1237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src
/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe8
6634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nk
ptd3rkqoyk/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spa
ck-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_devel
op-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnpython/../ivo
s -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/inst
all_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python3.11 -is
ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea
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-src/external/eigen -march=skylake -mtune=skylake -fopenmp-simd -g
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v/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o -MF CMakeFiles/
nrniv_lib.dir/__/nrnoc/intfire2.cpp.o.d -o CMakeFiles/nrniv_lib.di
r/__/nrnoc/intfire2.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-gi
t.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgs
n6tp6nkptd3rkqoyk/spack-build-pkci54k/src/nrnoc/intfire2.cpp
3375 [ 43%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/n
rnoc/intfire4.cpp.o
3376 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-bu
ild-pkci54k/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318260/spack/lib/spack/env/oneapi/icpx -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-st
age-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pk
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/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/s
pack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71123
7ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/iv
oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/
J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0
4707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-
src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
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4a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd
3rkqoyk/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-g
it.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhg
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lab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-sta
ge-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkc
i54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/oc -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/s
pack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_dev
elop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-build-pkci54k -I/gpfs/
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pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
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kci54k/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
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9cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rk
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ab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stag
e-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci
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n -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J
1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04
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rc/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr
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rkqoyk/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
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p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spac
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als -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
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bpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-git.
dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6
tp6nkptd3rkqoyk/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack
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on-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si
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s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/
spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f7112
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j12/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a
09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3r
kqoyk/spack-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-sta
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pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
4/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
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/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe8
6634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nk
ptd3rkqoyk/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.cscs.ch/s
sd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spa
ck-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_devel
op-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-src/src/nrnpython/../ivo
s -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/inst
all_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/include/python3.11 -is
ystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea
04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack
-src/external/eigen -march=skylake -mtune=skylake -fopenmp-simd -g
-O1 -fp-model precise -std=c++17 -fPIC -pthread -MD -MT src/nrni
v/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.o -MF CMakeFiles/
nrniv_lib.dir/__/nrnoc/intfire4.cpp.o.d -o CMakeFiles/nrniv_lib.di
r/__/nrnoc/intfire4.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-gi
t.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgs
n6tp6nkptd3rkqoyk/spack-build-pkci54k/src/nrnoc/intfire4.cpp
>> 3377 ../nrnoc/apcount.cpp:286:34: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3378 if (gind) { _globals = _thread[_gth].get<double*>(); }
3379 ^~~~
3380 _nt
3381 ../nrnoc/apcount.cpp:274:44: note: '_nt' declared here
3382 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3383 ^
>> 3384 ../nrnoc/apcount.cpp:286:33: error: array subscript is not an inte
ger
3385 if (gind) { _globals = _thread[_gth].get<double*>(); }
3386 ^~~~~
>> 3387 ../nrnoc/apcount.cpp:317:34: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3388 if (gind) { _globals = _thread[_gth].get<double*>(); }
3389 ^~~~
3390 _nt
3391 ../nrnoc/apcount.cpp:305:44: note: '_nt' declared here
3392 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3393 ^
>> 3394 ../nrnoc/apcount.cpp:317:33: error: array subscript is not an inte
ger
3395 if (gind) { _globals = _thread[_gth].get<double*>(); }
3396 ^~~~~
>> 3397 ../nrnoc/apcount.cpp:350:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3398 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3399 ^~~~
3400 _nt
3401 ../nrnoc/apcount.cpp:340:79: note: '_nt' declared here
3402 static void nrn_init(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type){
3403
^
>> 3404 ../nrnoc/apcount.cpp:350:36: error: array subscript is not an inte
ger
3405 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3406 ^~~~~
>> 3407 ../nrnoc/apcount.cpp:377:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3408 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3409 ^~~~
3410 _nt
3411 ../nrnoc/apcount.cpp:365:78: note: '_nt' declared here
3412 static void nrn_cur(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3413
^
>> 3414 ../nrnoc/apcount.cpp:377:36: error: array subscript is not an inte
ger
3415 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3416 ^~~~~
>> 3417 ../nrnoc/apcount.cpp:397:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3418 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3419 ^~~~
3420 _nt
3421 ../nrnoc/apcount.cpp:386:80: note: '_nt' declared here
3422 static void nrn_jacob(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3423
^
>> 3424 ../nrnoc/apcount.cpp:397:36: error: array subscript is not an inte
ger
3425 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3426 ^~~~~
>> 3427 ../nrnoc/apcount.cpp:415:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3428 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3429 ^~~~
3430 _nt
3431 ../nrnoc/apcount.cpp:405:80: note: '_nt' declared here
3432 static void nrn_state(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3433
^
>> 3434 ../nrnoc/apcount.cpp:415:36: error: array subscript is not an inte
ger
3435 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3436 ^~~~~
3437 12 errors generated.
>> 3438 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2511:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/apcount.cpp.o] Error 1
3439 make[2]: *** Waiting for unfinished jobs....
>> 3440 ../nrnoc/expsyn.cpp:323:39: error: use of undeclared identifier '_
gth'; did you mean '_nt'?
3441 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3442 ^~~~
3443 _nt
3444 ../nrnoc/expsyn.cpp:313:80: note: '_nt' declared here
3445 static void _ode_spec(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3446
^
>> 3447 ../nrnoc/expsyn.cpp:323:38: error: array subscript is not an integ
er
3448 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3449 ^~~~~
>> 3450 ../nrnoc/expsyn.cpp:356:39: error: use of undeclared identifier '_
gth'; did you mean '_nt'?
3451 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3452 ^~~~
3453 _nt
3454 ../nrnoc/expsyn.cpp:346:82: note: '_nt' declared here
3455 static void _ode_matsol(_nrn_model_sorted_token const& _sorted_tok
en, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3456
^
>> 3457 ../nrnoc/expsyn.cpp:356:38: error: array subscript is not an integ
er
3458 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3459 ^~~~~
>> 3460 ../nrnoc/expsyn.cpp:384:37: error: use of undeclared identifier '_
gth'; did you mean '_nt'?
3461 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3462 ^~~~
3463 _nt
3464 ../nrnoc/expsyn.cpp:374:79: note: '_nt' declared here
3465 static void nrn_init(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type){
3466
^
>> 3467 ../nrnoc/expsyn.cpp:384:36: error: array subscript is not an integ
er
3468 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3469 ^~~~~
>> 3470 ../nrnoc/expsyn.cpp:416:37: error: use of undeclared identifier '_
gth'; did you mean '_nt'?
3471 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3472 ^~~~
3473 _nt
3474 ../nrnoc/expsyn.cpp:404:78: note: '_nt' declared here
3475 static void nrn_cur(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3476
^
>> 3477 ../nrnoc/expsyn.cpp:416:36: error: array subscript is not an integ
er
3478 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3479 ^~~~~
>> 3480 ../nrnoc/expsyn.cpp:443:37: error: use of undeclared identifier '_
gth'; did you mean '_nt'?
3481 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3482 ^~~~
3483 _nt
3484 ../nrnoc/expsyn.cpp:432:80: note: '_nt' declared here
3485 static void nrn_jacob(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3486
^
>> 3487 ../nrnoc/expsyn.cpp:443:36: error: array subscript is not an integ
er
3488 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3489 ^~~~~
>> 3490 ../nrnoc/expsyn.cpp:461:37: error: use of undeclared identifier '_
gth'; did you mean '_nt'?
3491 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3492 ^~~~
3493 _nt
3494 ../nrnoc/expsyn.cpp:451:80: note: '_nt' declared here
3495 static void nrn_state(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3496
^
>> 3497 ../nrnoc/expsyn.cpp:461:36: error: array subscript is not an integ
er
3498 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3499 ^~~~~
3500 12 errors generated.
>> 3501 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2539:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/expsyn.cpp.o] Error 1
>> 3502 ../nrnoc/exp2syn.cpp:360:39: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3503 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3504 ^~~~
3505 _nt
3506 ../nrnoc/exp2syn.cpp:350:80: note: '_nt' declared here
3507 static void _ode_spec(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3508
^
>> 3509 ../nrnoc/exp2syn.cpp:360:38: error: array subscript is not an inte
ger
3510 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3511 ^~~~~
>> 3512 ../nrnoc/exp2syn.cpp:393:39: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3513 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3514 ^~~~
3515 _nt
3516 ../nrnoc/exp2syn.cpp:383:82: note: '_nt' declared here
3517 static void _ode_matsol(_nrn_model_sorted_token const& _sorted_tok
en, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3518
^
>> 3519 ../nrnoc/exp2syn.cpp:393:38: error: array subscript is not an inte
ger
3520 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3521 ^~~~~
>> 3522 ../nrnoc/exp2syn.cpp:433:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3523 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3524 ^~~~
3525 _nt
3526 ../nrnoc/exp2syn.cpp:423:79: note: '_nt' declared here
3527 static void nrn_init(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type){
3528
^
>> 3529 ../nrnoc/exp2syn.cpp:433:36: error: array subscript is not an inte
ger
3530 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3531 ^~~~~
>> 3532 ../nrnoc/exp2syn.cpp:466:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3533 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3534 ^~~~
3535 _nt
3536 ../nrnoc/exp2syn.cpp:454:78: note: '_nt' declared here
3537 static void nrn_cur(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3538
^
>> 3539 ../nrnoc/exp2syn.cpp:466:36: error: array subscript is not an inte
ger
3540 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3541 ^~~~~
>> 3542 ../nrnoc/exp2syn.cpp:493:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3543 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3544 ^~~~
3545 _nt
3546 ../nrnoc/exp2syn.cpp:482:80: note: '_nt' declared here
3547 static void nrn_jacob(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3548
^
>> 3549 ../nrnoc/exp2syn.cpp:493:36: error: array subscript is not an inte
ger
3550 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3551 ^~~~~
>> 3552 ../nrnoc/exp2syn.cpp:511:37: error: use of undeclared identifier '
_gth'; did you mean '_nt'?
3553 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3554 ^~~~
3555 _nt
3556 ../nrnoc/exp2syn.cpp:501:80: note: '_nt' declared here
3557 static void nrn_state(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3558
^
>> 3559 ../nrnoc/exp2syn.cpp:511:36: error: array subscript is not an inte
ger
3560 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3561 ^~~~~
3562 12 errors generated.
>> 3563 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2525:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/exp2syn.cpp.o] Error 1
>> 3564 ../nrnoc/hh.cpp:438:32: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3565 if (gind) { _globals = _thread[_gth].get<double*>(); }
3566 ^~~~
3567 _nt
3568 ../nrnoc/hh.cpp:426:44: note: '_nt' declared here
3569 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3570 ^
>> 3571 ../nrnoc/hh.cpp:438:31: error: array subscript is not an integer
3572 if (gind) { _globals = _thread[_gth].get<double*>(); }
3573 ^~~~~
>> 3574 ../nrnoc/hh.cpp:454:32: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3575 if (gind) { _globals = _thread[_gth].get<double*>(); }
3576 ^~~~
3577 _nt
3578 ../nrnoc/hh.cpp:447:44: note: '_nt' declared here
3579 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3580 ^
>> 3581 ../nrnoc/hh.cpp:454:31: error: array subscript is not an integer
3582 if (gind) { _globals = _thread[_gth].get<double*>(); }
3583 ^~~~~
>> 3584 ../nrnoc/hh.cpp:484:32: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3585 if (gind) { _globals = _thread[_gth].get<double*>(); }
3586 ^~~~
3587 _nt
3588 ../nrnoc/hh.cpp:475:44: note: '_nt' declared here
3589 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3590 ^
>> 3591 ../nrnoc/hh.cpp:484:31: error: array subscript is not an integer
3592 if (gind) { _globals = _thread[_gth].get<double*>(); }
3593 ^~~~~
>> 3594 ../nrnoc/hh.cpp:499:32: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3595 if (gind) { _globals = _thread[_gth].get<double*>(); }
3596 ^~~~
3597 _nt
3598 ../nrnoc/hh.cpp:492:44: note: '_nt' declared here
3599 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3600 ^
>> 3601 ../nrnoc/hh.cpp:499:31: error: array subscript is not an integer
3602 if (gind) { _globals = _thread[_gth].get<double*>(); }
3603 ^~~~~
>> 3604 ../nrnoc/hh.cpp:517:39: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3605 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3606 ^~~~
3607 _nt
3608 ../nrnoc/hh.cpp:507:80: note: '_nt' declared here
3609 static void _ode_spec(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3610
^
>> 3611 ../nrnoc/hh.cpp:517:38: error: array subscript is not an integer
3612 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3613 ^~~~~
>> 3614 ../nrnoc/hh.cpp:552:39: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3615 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3616 ^~~~
3617 _nt
3618 ../nrnoc/hh.cpp:542:82: note: '_nt' declared here
3619 static void _ode_matsol(_nrn_model_sorted_token const& _sorted_tok
en, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3620
^
>> 3621 ../nrnoc/hh.cpp:552:38: error: array subscript is not an integer
3622 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3623 ^~~~~
>> 3624 ../nrnoc/hh.cpp:587:37: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3625 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3626 ^~~~
3627 _nt
3628 ../nrnoc/hh.cpp:577:79: note: '_nt' declared here
3629 static void nrn_init(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type){
3630
^
>> 3631 ../nrnoc/hh.cpp:587:36: error: array subscript is not an integer
3632 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3633 ^~~~~
>> 3634 ../nrnoc/hh.cpp:626:37: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3635 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3636 ^~~~
3637 _nt
3638 ../nrnoc/hh.cpp:614:78: note: '_nt' declared here
3639 static void nrn_cur(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3640
^
>> 3641 ../nrnoc/hh.cpp:626:36: error: array subscript is not an integer
3642 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3643 ^~~~~
>> 3644 ../nrnoc/hh.cpp:661:37: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3645 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3646 ^~~~
3647 _nt
3648 ../nrnoc/hh.cpp:650:80: note: '_nt' declared here
3649 static void nrn_jacob(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3650
^
>> 3651 ../nrnoc/hh.cpp:661:36: error: array subscript is not an integer
3652 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3653 ^~~~~
>> 3654 ../nrnoc/hh.cpp:679:37: error: use of undeclared identifier '_gth'
; did you mean '_nt'?
3655 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3656 ^~~~
3657 _nt
3658 ../nrnoc/hh.cpp:669:80: note: '_nt' declared here
3659 static void nrn_state(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3660
^
3661 fatal error: too many errors emitted, stopping now [-ferror-limit=
]
3662 20 errors generated.
>> 3663 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2567:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/hh.cpp.o] Error 1
>> 3664 ../nrnoc/intfire1.cpp:282:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3665 if (gind) { _globals = _thread[_gth].get<double*>(); }
3666 ^~~~
3667 _nt
3668 ../nrnoc/intfire1.cpp:270:44: note: '_nt' declared here
3669 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3670 ^
>> 3671 ../nrnoc/intfire1.cpp:282:33: error: array subscript is not an int
eger
3672 if (gind) { _globals = _thread[_gth].get<double*>(); }
3673 ^~~~~
>> 3674 ../nrnoc/intfire1.cpp:336:37: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3675 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3676 ^~~~
3677 _nt
3678 ../nrnoc/intfire1.cpp:326:79: note: '_nt' declared here
3679 static void nrn_init(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type){
3680
^
>> 3681 ../nrnoc/intfire1.cpp:336:36: error: array subscript is not an int
eger
3682 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3683 ^~~~~
>> 3684 ../nrnoc/intfire1.cpp:360:37: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3685 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3686 ^~~~
3687 _nt
3688 ../nrnoc/intfire1.cpp:350:80: note: '_nt' declared here
3689 static void nrn_state(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3690
^
>> 3691 ../nrnoc/intfire1.cpp:360:36: error: array subscript is not an int
eger
3692 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3693 ^~~~~
3694 6 errors generated.
>> 3695 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2581:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire1.cpp.o] Error
1
>> 3696 ../nrnoc/intfire2.cpp:294:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3697 if (gind) { _globals = _thread[_gth].get<double*>(); }
3698 ^~~~
3699 _nt
3700 ../nrnoc/intfire2.cpp:282:44: note: '_nt' declared here
3701 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3702 ^
>> 3703 ../nrnoc/intfire2.cpp:294:33: error: array subscript is not an int
eger
3704 if (gind) { _globals = _thread[_gth].get<double*>(); }
3705 ^~~~~
>> 3706 ../nrnoc/intfire2.cpp:324:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3707 if (gind) { _globals = _thread[_gth].get<double*>(); }
3708 ^~~~
3709 _nt
3710 ../nrnoc/intfire2.cpp:312:44: note: '_nt' declared here
3711 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3712 ^
>> 3713 ../nrnoc/intfire2.cpp:324:33: error: array subscript is not an int
eger
3714 if (gind) { _globals = _thread[_gth].get<double*>(); }
3715 ^~~~~
>> 3716 ../nrnoc/intfire2.cpp:347:63: error: use of undeclared identifier
'_globals'
3717 artcell_net_send ( _tqitem, _args, _pnt, t + firetime ( _thr
eadargscomma_ ib , _libf , 0.0 ) , 1.0 ) ;
3718 ^
3719 ../nrnoc/intfire2.cpp:48:55: note: expanded from macro '_threadarg
scomma_'
3720 #define _threadargscomma_ _ml, _iml, _ppvar, _thread, _globals, _n
t,
3721 ^
>> 3722 ../nrnoc/intfire2.cpp:357:53: error: use of undeclared identifier
'_globals'
3723 artcell_net_move ( _tqitem, _pnt, firetime ( _threadargscom
ma_ ib , _libf , m ) + t ) ;
3724 ^
3725 ../nrnoc/intfire2.cpp:48:55: note: expanded from macro '_threadarg
scomma_'
3726 #define _threadargscomma_ _ml, _iml, _ppvar, _thread, _globals, _n
t,
3727 ^
>> 3728 ../nrnoc/intfire2.cpp:418:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3729 if (gind) { _globals = _thread[_gth].get<double*>(); }
3730 ^~~~
3731 _nt
3732 ../nrnoc/intfire2.cpp:406:44: note: '_nt' declared here
3733 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3734 ^
>> 3735 ../nrnoc/intfire2.cpp:418:33: error: array subscript is not an int
eger
3736 if (gind) { _globals = _thread[_gth].get<double*>(); }
3737 ^~~~~
>> 3738 ../nrnoc/intfire2.cpp:472:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3739 if (gind) { _globals = _thread[_gth].get<double*>(); }
3740 ^~~~
3741 _nt
3742 ../nrnoc/intfire2.cpp:460:44: note: '_nt' declared here
3743 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3744 ^
>> 3745 ../nrnoc/intfire2.cpp:472:33: error: array subscript is not an int
eger
3746 if (gind) { _globals = _thread[_gth].get<double*>(); }
3747 ^~~~~
>> 3748 ../nrnoc/intfire2.cpp:503:37: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3749 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3750 ^~~~
3751 _nt
3752 ../nrnoc/intfire2.cpp:493:79: note: '_nt' declared here
3753 static void nrn_init(_nrn_model_sorted_token const& _sorted_token,
NrnThread* _nt, Memb_list* _ml_arg, int _type){
3754
^
>> 3755 ../nrnoc/intfire2.cpp:503:36: error: array subscript is not an int
eger
3756 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3757 ^~~~~
>> 3758 ../nrnoc/intfire2.cpp:527:37: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3759 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3760 ^~~~
3761 _nt
3762 ../nrnoc/intfire2.cpp:517:80: note: '_nt' declared here
3763 static void nrn_state(_nrn_model_sorted_token const& _sorted_token
, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
3764
^
>> 3765 ../nrnoc/intfire2.cpp:527:36: error: array subscript is not an int
eger
3766 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3767 ^~~~~
3768 14 errors generated.
>> 3769 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2595:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o] Error
1
>> 3770 ../nrnoc/intfire4.cpp:425:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3771 if (gind) { _globals = _thread[_gth].get<double*>(); }
3772 ^~~~
3773 _nt
3774 ../nrnoc/intfire4.cpp:413:44: note: '_nt' declared here
3775 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3776 ^
>> 3777 ../nrnoc/intfire4.cpp:425:33: error: array subscript is not an int
eger
3778 if (gind) { _globals = _thread[_gth].get<double*>(); }
3779 ^~~~~
>> 3780 ../nrnoc/intfire4.cpp:454:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3781 if (gind) { _globals = _thread[_gth].get<double*>(); }
3782 ^~~~
3783 _nt
3784 ../nrnoc/intfire4.cpp:442:44: note: '_nt' declared here
3785 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3786 ^
>> 3787 ../nrnoc/intfire4.cpp:454:33: error: array subscript is not an int
eger
3788 if (gind) { _globals = _thread[_gth].get<double*>(); }
3789 ^~~~~
>> 3790 ../nrnoc/intfire4.cpp:482:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3791 if (gind) { _globals = _thread[_gth].get<double*>(); }
3792 ^~~~
3793 _nt
3794 ../nrnoc/intfire4.cpp:470:44: note: '_nt' declared here
3795 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3796 ^
>> 3797 ../nrnoc/intfire4.cpp:482:33: error: array subscript is not an int
eger
3798 if (gind) { _globals = _thread[_gth].get<double*>(); }
3799 ^~~~~
>> 3800 ../nrnoc/intfire4.cpp:510:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3801 if (gind) { _globals = _thread[_gth].get<double*>(); }
3802 ^~~~
3803 _nt
3804 ../nrnoc/intfire4.cpp:498:44: note: '_nt' declared here
3805 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3806 ^
>> 3807 ../nrnoc/intfire4.cpp:510:33: error: array subscript is not an int
eger
3808 if (gind) { _globals = _thread[_gth].get<double*>(); }
3809 ^~~~~
>> 3810 ../nrnoc/intfire4.cpp:538:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3811 if (gind) { _globals = _thread[_gth].get<double*>(); }
3812 ^~~~
3813 _nt
3814 ../nrnoc/intfire4.cpp:526:44: note: '_nt' declared here
3815 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3816 ^
>> 3817 ../nrnoc/intfire4.cpp:538:33: error: array subscript is not an int
eger
3818 if (gind) { _globals = _thread[_gth].get<double*>(); }
3819 ^~~~~
>> 3820 ../nrnoc/intfire4.cpp:618:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3821 if (gind) { _globals = _thread[_gth].get<double*>(); }
3822 ^~~~
3823 _nt
3824 ../nrnoc/intfire4.cpp:606:44: note: '_nt' declared here
3825 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3826 ^
>> 3827 ../nrnoc/intfire4.cpp:618:33: error: array subscript is not an int
eger
3828 if (gind) { _globals = _thread[_gth].get<double*>(); }
3829 ^~~~~
>> 3830 ../nrnoc/intfire4.cpp:669:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3831 if (gind) { _globals = _thread[_gth].get<double*>(); }
3832 ^~~~
3833 _nt
3834 ../nrnoc/intfire4.cpp:657:44: note: '_nt' declared here
3835 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3836 ^
>> 3837 ../nrnoc/intfire4.cpp:669:33: error: array subscript is not an int
eger
3838 if (gind) { _globals = _thread[_gth].get<double*>(); }
3839 ^~~~~
>> 3840 ../nrnoc/intfire4.cpp:697:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3841 if (gind) { _globals = _thread[_gth].get<double*>(); }
3842 ^~~~
3843 _nt
3844 ../nrnoc/intfire4.cpp:685:44: note: '_nt' declared here
3845 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3846 ^
>> 3847 ../nrnoc/intfire4.cpp:697:33: error: array subscript is not an int
eger
3848 if (gind) { _globals = _thread[_gth].get<double*>(); }
3849 ^~~~~
>> 3850 ../nrnoc/intfire4.cpp:759:34: error: use of undeclared identifier
'_gth'; did you mean '_nt'?
3851 if (gind) { _globals = _thread[_gth].get<double*>(); }
3852 ^~~~
3853 _nt
3854 ../nrnoc/intfire4.cpp:747:44: note: '_nt' declared here
3855 Datum* _ppvar; Datum* _thread; NrnThread* _nt;
3856 ^
>> 3857 ../nrnoc/intfire4.cpp:759:33: error: array subscript is not an int
eger
3858 if (gind) { _globals = _thread[_gth].get<double*>(); }
3859 ^~~~~
>> 3860 ../nrnoc/intfire4.cpp:774:16: error: use of undeclared identifier
'_globals'
3861 newstates ( _threadargscomma_ t - t0 ) ;
3862 ^
3863 ../nrnoc/intfire4.cpp:52:55: note: expanded from macro '_threadarg
scomma_'
3864 #define _threadargscomma_ _ml, _iml, _ppvar, _thread, _globals, _n
t,
3865 ^
3866 fatal error: too many errors emitted, stopping now [-ferror-limit=
]
3867 20 errors generated.
>> 3868 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2609:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.o] Error
1
3869 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn
6tp6nkptd3rkqoyk/spack-build-pkci54k'
>> 3870 make[1]: *** [CMakeFiles/Makefile2:2699: src/nrniv/CMakeFiles/nrni
v_lib.dir/all] Error 2
3871 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn
6tp6nkptd3rkqoyk/spack-build-pkci54k'
>> 3872 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318264/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pkci54k7si4yhgsn6tp6nkptd3rkqoyk/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i4n30: task 0: Exited with exit code 1
section_end:1718270249:step_script section_start:1718270249:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=218928 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1318264 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=218964 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1318264 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=219003 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1318264 responseStatus=201 Created token=glcbt-64
section_end:1718270251:upload_artifacts_on_failure section_start:1718270251:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718270252:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-nvhpc-acc-legacy.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718269858:resolve_secrets Resolving secrets
section_end:1718269858:resolve_secrets section_start:1718269858:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor246534905, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 216775, build ref , job ID 1318265
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1318265_PROD_P2160_CP2_C3
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2249755
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1318265_PROD_P2160_CP2_C3 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --ntasks=2 --jobid=2249755 --cpus-per-task=8 --mem=160G
section_end:1718269861:prepare_executor section_start:1718269861:prepare_script Preparing environment
Using git from spack modules
Running on r1i7n20 via bbpv1.epfl.ch...
section_end:1718269866:prepare_script section_start:1718269866:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718269868:get_sources section_start:1718269868:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=196626 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1718269876:restore_cache section_start:1718269876:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1318262)...
Runtime platform  arch=amd64 os=linux pid=196749 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1318262 responseStatus=200 OK token=glcbt-64
section_end:1718269877:download_artifacts section_start:1718269877:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775/J1318265_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/d3mdhq7gjxncmj42lvxjtytypcjqpwmf
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2249755/ccache
Config file: /nvme/bbpcihpcproj12/2249755/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Thu Jun 13 11:11:27 2024
Local storage:
Cache size (GB): 0.45 / 0.51 (88.76%)
Files: 10062
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/d3mdhq7gjxncmj42lvxjtytypcjqpwmf
Concretized
--------------------------------
- bhqdxpz neuron@git.dbfe86634a09cf2329eea04707f711237ed86e76=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] d3mdhq7 ^nmodl@git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb_develop-d3mdhq
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
==> Installing neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76=develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v [50/50]
==> No binary for neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76=develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
161 errors found in build log:
2875 [ 29%] Running nrnivmodl-core with internal mod files
2876 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318265/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-bu
ild-bhqdxpz/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak
e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P216775/J1318265/spack-build/spack-stage-neuron-git.dbfe866
34a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml
2zce4l7v/spack-build-bhqdxpz/bin/nrnivmodl-core -b STATIC -m /gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/i
nstall_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0df7
082f7ea5cb_develop-d3mdhq/bin/nmodl -n internal -p 4 .
2877 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage-neuron
-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe
6lkdp32koxml2zce4l7v/spack-build-bhqdxpz/bin', compiling default o
nes only!
2878 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkd
p32koxml2zce4l7v/spack-build-bhqdxpz/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P216775/J1318265/spack-build/spack-stage-neuron-git.dbfe86634a
09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zc
e4l7v/spack-build-bhqdxpz MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software
/install_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0d
f7082f7ea5cb_develop-d3mdhq/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
2879 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage-neuron-gi
t.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lk
dp32koxml2zce4l7v/spack-build-bhqdxpz/bin'
2880 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2881 make[3]: xcrun: No such file or directory
2882 Default NMODL flags:
>> 2883 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
2884 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2885 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2886 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2887 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
2888 "../../../spack-src/external/eigen/Eigen/src/Core/arch/AVX/PacketM
ath.h", line 984: warning: integer conversion resulted in a change
of sign [integer_sign_change]
2889 const __m128i sign_mask = _mm_set1_epi16(static_cast<numext::u
int16_t>(0x8000));
...
3491 [ 36%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/n
rnoc/intfire1.cpp.o
3492 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318265/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-bu
ild-bhqdxpz/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318260/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-st
age-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bh
qdxpzqgqqe6lkdp32koxml2zce4l7v/spack-build-bhqdxpz/include -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/s
pack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71123
7ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-src/src/iv
oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/
J1318265/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0
4707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-
src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P216775/J1318265/spack-build/spack-stage-neuron-git.dbfe8663
4a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2
zce4l7v/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage-neuron-g
it.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6l
kdp32koxml2zce4l7v/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-sta
ge-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhq
dxpzqgqqe6lkdp32koxml2zce4l7v/spack-src/src/oc -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/s
pack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_dev
elop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-build-bhqdxpz -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/sp
ack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237
ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-build-bhqdx
pz/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr
oj12/P216775/J1318265/spack-build/spack-stage-neuron-git.dbfe86634
a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2z
ce4l7v/spack-build-bhqdxpz/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage
-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdx
pzqgqqe6lkdp32koxml2zce4l7v/spack-build-bhqdxpz/src/nrnpython -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
5/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
1237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-build-b
hqdxpz/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P216775/J1318265/spack-build/spack-stage-neuron-git.dbfe86634a0
9cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce
4l7v/spack-build-bhqdxpz/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitl
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e-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqd
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/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1
2.3.0-skylake/python-3.11.6-bj4i6m/include/python3.11 -isystem /gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265
/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711
237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-src/exte
rnal/eigen -tp haswell -g -O1 -fno-omit-frame-pointer --c++17 -fP
IC --diag_suppress=1,47,111,128,170,174,177,186,541,550,816,2465 -
noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/
intfire2.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.
o.d -o CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o -c /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spa
ck-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237e
d86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-build-bhqdxp
z/src/nrnoc/intfire2.cpp
3495 [ 36%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/n
rnoc/intfire4.cpp.o
3496 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318265/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-bu
ild-bhqdxpz/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318260/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-st
age-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bh
qdxpzqgqqe6lkdp32koxml2zce4l7v/spack-build-bhqdxpz/include -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/s
pack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71123
7ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-src/src/iv
oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/
J1318265/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0
4707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-
src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P216775/J1318265/spack-build/spack-stage-neuron-git.dbfe8663
4a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2
zce4l7v/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage-neuron-g
it.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6l
kdp32koxml2zce4l7v/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-sta
ge-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhq
dxpzqgqqe6lkdp32koxml2zce4l7v/spack-src/src/oc -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/s
pack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_dev
elop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-build-bhqdxpz -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/sp
ack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237
ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-build-bhqdx
pz/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr
oj12/P216775/J1318265/spack-build/spack-stage-neuron-git.dbfe86634
a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2z
ce4l7v/spack-build-bhqdxpz/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage
-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdx
pzqgqqe6lkdp32koxml2zce4l7v/spack-build-bhqdxpz/src/nrnpython -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
5/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
1237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-build-b
hqdxpz/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P216775/J1318265/spack-build/spack-stage-neuron-git.dbfe86634a0
9cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce
4l7v/spack-build-bhqdxpz/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-stag
e-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqd
xpzqgqqe6lkdp32koxml2zce4l7v/spack-build-bhqdxpz/src/sundials -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
5/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
1237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-build-b
hqdxpz/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage-neuron-gi
t.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lk
dp32koxml2zce4l7v/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage-neur
on-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgq
qe6lkdp32koxml2zce4l7v/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-s
tage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-b
hqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-src/src/nrnmpi -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-b
uild/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e
76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-src/src/nrnpytho
n -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J
1318265/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04
707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-s
rc/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr
oj12/P216775/J1318265/spack-build/spack-stage-neuron-git.dbfe86634
a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2z
ce4l7v/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage-neuron
-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe
6lkdp32koxml2zce4l7v/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-
stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-
bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-src/src/sparse13 -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spac
k-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed
86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-src/src/sundi
als -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
/J1318265/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea
04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack
-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P216775/J1318265/spack-build/spack-stage-neuron-git.
dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp
32koxml2zce4l7v/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/spack
-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop
-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-src/src/sundials/shared -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318
265/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f
711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-build
-bhqdxpz/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2
024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.
p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318265/spack-build/spack-stage-neuron-git.db
fe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32
koxml2zce4l7v/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage-neu
ron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqg
qqe6lkdp32koxml2zce4l7v/spack-src/src/nrnpython/.. -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-bui
ld/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76
_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-src/src/nrnpython/
../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2167
75/J1318265/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329e
ea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spa
ck-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage-neuron
-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe
6lkdp32koxml2zce4l7v/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-b
uild/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e
76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-src/src/nrnpytho
n/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P216775/J1318265/spack-build/spack-stage-neuron-git.dbfe86634a09cf
2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7
v/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage-
neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxp
zqgqqe6lkdp32koxml2zce4l7v/spack-src/src/nrnpython/../ivos -I/gpfs
/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1
2.3.0-skylake/python-3.11.6-bj4i6m/include/python3.11 -isystem /gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265
/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711
237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-src/exte
rnal/eigen -tp haswell -g -O1 -fno-omit-frame-pointer --c++17 -fP
IC --diag_suppress=1,47,111,128,170,174,177,186,541,550,816,2465 -
noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/
intfire4.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.
o.d -o CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.o -c /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spa
ck-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237e
d86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-build-bhqdxp
z/src/nrnoc/intfire4.cpp
>> 3497 "../nrnoc/apcount.cpp", line 286: error: identifier "_gth" is unde
fined
3498 if (gind) { _globals = _thread[_gth].get<double*>(); }
3499 ^
3500
>> 3501 "../nrnoc/apcount.cpp", line 286: error: type name is not allowed
3502 if (gind) { _globals = _thread[_gth].get<double*>(); }
3503 ^
3504
>> 3505 "../nrnoc/apcount.cpp", line 286: error: expected an expression
3506 if (gind) { _globals = _thread[_gth].get<double*>(); }
3507 ^
3508
>> 3509 "../nrnoc/apcount.cpp", line 317: error: identifier "_gth" is unde
fined
3510 if (gind) { _globals = _thread[_gth].get<double*>(); }
3511 ^
3512
>> 3513 "../nrnoc/apcount.cpp", line 317: error: type name is not allowed
3514 if (gind) { _globals = _thread[_gth].get<double*>(); }
3515 ^
3516
>> 3517 "../nrnoc/apcount.cpp", line 317: error: expected an expression
3518 if (gind) { _globals = _thread[_gth].get<double*>(); }
3519 ^
3520
>> 3521 "../nrnoc/apcount.cpp", line 350: error: identifier "_gth" is unde
fined
3522 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3523 ^
3524
>> 3525 "../nrnoc/apcount.cpp", line 350: error: type name is not allowed
3526 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3527 ^
3528
>> 3529 "../nrnoc/apcount.cpp", line 350: error: expected an expression
3530 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3531 ^
3532
>> 3533 "../nrnoc/apcount.cpp", line 377: error: identifier "_gth" is unde
fined
3534 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3535 ^
3536
>> 3537 "../nrnoc/apcount.cpp", line 377: error: type name is not allowed
3538 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3539 ^
3540
>> 3541 "../nrnoc/apcount.cpp", line 377: error: expected an expression
3542 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3543 ^
3544
>> 3545 "../nrnoc/apcount.cpp", line 397: error: identifier "_gth" is unde
fined
3546 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3547 ^
3548
>> 3549 "../nrnoc/apcount.cpp", line 397: error: type name is not allowed
3550 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3551 ^
3552
>> 3553 "../nrnoc/apcount.cpp", line 397: error: expected an expression
3554 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3555 ^
3556
>> 3557 "../nrnoc/apcount.cpp", line 415: error: identifier "_gth" is unde
fined
3558 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3559 ^
3560
>> 3561 "../nrnoc/apcount.cpp", line 415: error: type name is not allowed
3562 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3563 ^
3564
>> 3565 "../nrnoc/apcount.cpp", line 415: error: expected an expression
3566 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3567 ^
3568
3569 18 errors detected in the compilation of "../nrnoc/apcount.cpp".
>> 3570 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2500:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/apcount.cpp.o] Error 2
3571 make[2]: *** Waiting for unfinished jobs....
>> 3572 "../nrnoc/expsyn.cpp", line 323: error: identifier "_gth" is undef
ined
3573 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3574 ^
3575
>> 3576 "../nrnoc/expsyn.cpp", line 323: error: type name is not allowed
3577 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3578 ^
3579
>> 3580 "../nrnoc/expsyn.cpp", line 323: error: expected an expression
3581 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3582 ^
3583
>> 3584 "../nrnoc/expsyn.cpp", line 356: error: identifier "_gth" is undef
ined
3585 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3586 ^
3587
>> 3588 "../nrnoc/expsyn.cpp", line 356: error: type name is not allowed
3589 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3590 ^
3591
>> 3592 "../nrnoc/expsyn.cpp", line 356: error: expected an expression
3593 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3594 ^
3595
>> 3596 "../nrnoc/expsyn.cpp", line 384: error: identifier "_gth" is undef
ined
3597 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3598 ^
3599
>> 3600 "../nrnoc/expsyn.cpp", line 384: error: type name is not allowed
3601 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3602 ^
3603
>> 3604 "../nrnoc/expsyn.cpp", line 384: error: expected an expression
3605 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3606 ^
3607
>> 3608 "../nrnoc/expsyn.cpp", line 416: error: identifier "_gth" is undef
ined
3609 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3610 ^
3611
>> 3612 "../nrnoc/expsyn.cpp", line 416: error: type name is not allowed
3613 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3614 ^
3615
>> 3616 "../nrnoc/expsyn.cpp", line 416: error: expected an expression
3617 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3618 ^
3619
>> 3620 "../nrnoc/expsyn.cpp", line 443: error: identifier "_gth" is undef
ined
3621 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3622 ^
3623
>> 3624 "../nrnoc/expsyn.cpp", line 443: error: type name is not allowed
3625 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3626 ^
3627
>> 3628 "../nrnoc/expsyn.cpp", line 443: error: expected an expression
3629 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3630 ^
3631
>> 3632 "../nrnoc/expsyn.cpp", line 461: error: identifier "_gth" is undef
ined
3633 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3634 ^
3635
>> 3636 "../nrnoc/expsyn.cpp", line 461: error: type name is not allowed
3637 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3638 ^
3639
>> 3640 "../nrnoc/expsyn.cpp", line 461: error: expected an expression
3641 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3642 ^
3643
3644 18 errors detected in the compilation of "../nrnoc/expsyn.cpp".
>> 3645 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2528:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/expsyn.cpp.o] Error 2
>> 3646 "../nrnoc/exp2syn.cpp", line 360: error: identifier "_gth" is unde
fined
3647 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3648 ^
3649
>> 3650 "../nrnoc/exp2syn.cpp", line 360: error: type name is not allowed
3651 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3652 ^
3653
>> 3654 "../nrnoc/exp2syn.cpp", line 360: error: expected an expression
3655 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3656 ^
3657
>> 3658 "../nrnoc/exp2syn.cpp", line 393: error: identifier "_gth" is unde
fined
3659 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3660 ^
3661
>> 3662 "../nrnoc/exp2syn.cpp", line 393: error: type name is not allowed
3663 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3664 ^
3665
>> 3666 "../nrnoc/exp2syn.cpp", line 393: error: expected an expression
3667 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3668 ^
3669
>> 3670 "../nrnoc/exp2syn.cpp", line 433: error: identifier "_gth" is unde
fined
3671 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3672 ^
3673
>> 3674 "../nrnoc/exp2syn.cpp", line 433: error: type name is not allowed
3675 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3676 ^
3677
>> 3678 "../nrnoc/exp2syn.cpp", line 433: error: expected an expression
3679 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3680 ^
3681
>> 3682 "../nrnoc/exp2syn.cpp", line 466: error: identifier "_gth" is unde
fined
3683 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3684 ^
3685
>> 3686 "../nrnoc/exp2syn.cpp", line 466: error: type name is not allowed
3687 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3688 ^
3689
>> 3690 "../nrnoc/exp2syn.cpp", line 466: error: expected an expression
3691 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3692 ^
3693
>> 3694 "../nrnoc/exp2syn.cpp", line 493: error: identifier "_gth" is unde
fined
3695 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3696 ^
3697
>> 3698 "../nrnoc/exp2syn.cpp", line 493: error: type name is not allowed
3699 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3700 ^
3701
>> 3702 "../nrnoc/exp2syn.cpp", line 493: error: expected an expression
3703 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3704 ^
3705
>> 3706 "../nrnoc/exp2syn.cpp", line 511: error: identifier "_gth" is unde
fined
3707 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3708 ^
3709
>> 3710 "../nrnoc/exp2syn.cpp", line 511: error: type name is not allowed
3711 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3712 ^
3713
>> 3714 "../nrnoc/exp2syn.cpp", line 511: error: expected an expression
3715 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3716 ^
3717
3718 18 errors detected in the compilation of "../nrnoc/exp2syn.cpp".
>> 3719 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2514:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/exp2syn.cpp.o] Error 2
>> 3720 "../nrnoc/hh.cpp", line 438: error: identifier "_gth" is undefined
3721 if (gind) { _globals = _thread[_gth].get<double*>(); }
3722 ^
3723
>> 3724 "../nrnoc/hh.cpp", line 438: error: type name is not allowed
3725 if (gind) { _globals = _thread[_gth].get<double*>(); }
3726 ^
3727
>> 3728 "../nrnoc/hh.cpp", line 438: error: expected an expression
3729 if (gind) { _globals = _thread[_gth].get<double*>(); }
3730 ^
3731
>> 3732 "../nrnoc/hh.cpp", line 454: error: identifier "_gth" is undefined
3733 if (gind) { _globals = _thread[_gth].get<double*>(); }
3734 ^
3735
>> 3736 "../nrnoc/hh.cpp", line 454: error: type name is not allowed
3737 if (gind) { _globals = _thread[_gth].get<double*>(); }
3738 ^
3739
>> 3740 "../nrnoc/hh.cpp", line 454: error: expected an expression
3741 if (gind) { _globals = _thread[_gth].get<double*>(); }
3742 ^
3743
>> 3744 "../nrnoc/hh.cpp", line 484: error: identifier "_gth" is undefined
3745 if (gind) { _globals = _thread[_gth].get<double*>(); }
3746 ^
3747
>> 3748 "../nrnoc/hh.cpp", line 484: error: type name is not allowed
3749 if (gind) { _globals = _thread[_gth].get<double*>(); }
3750 ^
3751
>> 3752 "../nrnoc/hh.cpp", line 484: error: expected an expression
3753 if (gind) { _globals = _thread[_gth].get<double*>(); }
3754 ^
3755
>> 3756 "../nrnoc/hh.cpp", line 499: error: identifier "_gth" is undefined
3757 if (gind) { _globals = _thread[_gth].get<double*>(); }
3758 ^
3759
>> 3760 "../nrnoc/hh.cpp", line 499: error: type name is not allowed
3761 if (gind) { _globals = _thread[_gth].get<double*>(); }
3762 ^
3763
>> 3764 "../nrnoc/hh.cpp", line 499: error: expected an expression
3765 if (gind) { _globals = _thread[_gth].get<double*>(); }
3766 ^
3767
>> 3768 "../nrnoc/hh.cpp", line 517: error: identifier "_gth" is undefined
3769 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3770 ^
3771
>> 3772 "../nrnoc/hh.cpp", line 517: error: type name is not allowed
3773 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3774 ^
3775
>> 3776 "../nrnoc/hh.cpp", line 517: error: expected an expression
3777 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3778 ^
3779
>> 3780 "../nrnoc/hh.cpp", line 552: error: identifier "_gth" is undefined
3781 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3782 ^
3783
>> 3784 "../nrnoc/hh.cpp", line 552: error: type name is not allowed
3785 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3786 ^
3787
>> 3788 "../nrnoc/hh.cpp", line 552: error: expected an expression
3789 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3790 ^
3791
>> 3792 "../nrnoc/hh.cpp", line 587: error: identifier "_gth" is undefined
3793 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3794 ^
3795
>> 3796 "../nrnoc/hh.cpp", line 587: error: type name is not allowed
3797 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3798 ^
3799
>> 3800 "../nrnoc/hh.cpp", line 587: error: expected an expression
3801 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3802 ^
3803
>> 3804 "../nrnoc/hh.cpp", line 626: error: identifier "_gth" is undefined
3805 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3806 ^
3807
>> 3808 "../nrnoc/hh.cpp", line 626: error: type name is not allowed
3809 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3810 ^
3811
>> 3812 "../nrnoc/hh.cpp", line 626: error: expected an expression
3813 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3814 ^
3815
>> 3816 "../nrnoc/hh.cpp", line 661: error: identifier "_gth" is undefined
3817 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3818 ^
3819
>> 3820 "../nrnoc/hh.cpp", line 661: error: type name is not allowed
3821 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3822 ^
3823
>> 3824 "../nrnoc/hh.cpp", line 661: error: expected an expression
3825 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3826 ^
3827
>> 3828 "../nrnoc/hh.cpp", line 679: error: identifier "_gth" is undefined
3829 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3830 ^
3831
>> 3832 "../nrnoc/hh.cpp", line 679: error: type name is not allowed
3833 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3834 ^
3835
>> 3836 "../nrnoc/hh.cpp", line 679: error: expected an expression
3837 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3838 ^
3839
3840 30 errors detected in the compilation of "../nrnoc/hh.cpp".
>> 3841 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2556:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/hh.cpp.o] Error 2
>> 3842 "../nrnoc/intfire1.cpp", line 282: error: identifier "_gth" is und
efined
3843 if (gind) { _globals = _thread[_gth].get<double*>(); }
3844 ^
3845
>> 3846 "../nrnoc/intfire1.cpp", line 282: error: type name is not allowed
3847 if (gind) { _globals = _thread[_gth].get<double*>(); }
3848 ^
3849
>> 3850 "../nrnoc/intfire1.cpp", line 282: error: expected an expression
3851 if (gind) { _globals = _thread[_gth].get<double*>(); }
3852 ^
3853
>> 3854 "../nrnoc/intfire1.cpp", line 336: error: identifier "_gth" is und
efined
3855 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3856 ^
3857
>> 3858 "../nrnoc/intfire1.cpp", line 336: error: type name is not allowed
3859 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3860 ^
3861
>> 3862 "../nrnoc/intfire1.cpp", line 336: error: expected an expression
3863 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3864 ^
3865
>> 3866 "../nrnoc/intfire1.cpp", line 360: error: identifier "_gth" is und
efined
3867 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3868 ^
3869
>> 3870 "../nrnoc/intfire1.cpp", line 360: error: type name is not allowed
3871 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3872 ^
3873
>> 3874 "../nrnoc/intfire1.cpp", line 360: error: expected an expression
3875 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3876 ^
3877
3878 9 errors detected in the compilation of "../nrnoc/intfire1.cpp".
>> 3879 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2570:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire1.cpp.o] Error
2
>> 3880 "../nrnoc/intfire2.cpp", line 294: error: identifier "_gth" is und
efined
3881 if (gind) { _globals = _thread[_gth].get<double*>(); }
3882 ^
3883
>> 3884 "../nrnoc/intfire2.cpp", line 294: error: type name is not allowed
3885 if (gind) { _globals = _thread[_gth].get<double*>(); }
3886 ^
3887
>> 3888 "../nrnoc/intfire2.cpp", line 294: error: expected an expression
3889 if (gind) { _globals = _thread[_gth].get<double*>(); }
3890 ^
3891
>> 3892 "../nrnoc/intfire2.cpp", line 324: error: identifier "_gth" is und
efined
3893 if (gind) { _globals = _thread[_gth].get<double*>(); }
3894 ^
3895
>> 3896 "../nrnoc/intfire2.cpp", line 324: error: type name is not allowed
3897 if (gind) { _globals = _thread[_gth].get<double*>(); }
3898 ^
3899
>> 3900 "../nrnoc/intfire2.cpp", line 324: error: expected an expression
3901 if (gind) { _globals = _thread[_gth].get<double*>(); }
3902 ^
3903
>> 3904 "../nrnoc/intfire2.cpp", line 347: error: identifier "_globals" is
undefined
3905 artcell_net_send ( _tqitem, _args, _pnt, t + firetime ( _t
hreadargscomma_ ib , _libf , 0.0 ) , 1.0 ) ;
3906 ^
3907
>> 3908 "../nrnoc/intfire2.cpp", line 357: error: identifier "_globals" is
undefined
3909 artcell_net_move ( _tqitem, _pnt, firetime ( _threadargsc
omma_ ib , _libf , m ) + t ) ;
3910 ^
3911
>> 3912 "../nrnoc/intfire2.cpp", line 418: error: identifier "_gth" is und
efined
3913 if (gind) { _globals = _thread[_gth].get<double*>(); }
3914 ^
3915
>> 3916 "../nrnoc/intfire2.cpp", line 418: error: type name is not allowed
3917 if (gind) { _globals = _thread[_gth].get<double*>(); }
3918 ^
3919
>> 3920 "../nrnoc/intfire2.cpp", line 418: error: expected an expression
3921 if (gind) { _globals = _thread[_gth].get<double*>(); }
3922 ^
3923
>> 3924 "../nrnoc/intfire2.cpp", line 472: error: identifier "_gth" is und
efined
3925 if (gind) { _globals = _thread[_gth].get<double*>(); }
3926 ^
3927
>> 3928 "../nrnoc/intfire2.cpp", line 472: error: type name is not allowed
3929 if (gind) { _globals = _thread[_gth].get<double*>(); }
3930 ^
3931
>> 3932 "../nrnoc/intfire2.cpp", line 472: error: expected an expression
3933 if (gind) { _globals = _thread[_gth].get<double*>(); }
3934 ^
3935
>> 3936 "../nrnoc/intfire2.cpp", line 503: error: identifier "_gth" is und
efined
3937 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3938 ^
3939
>> 3940 "../nrnoc/intfire2.cpp", line 503: error: type name is not allowed
3941 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3942 ^
3943
>> 3944 "../nrnoc/intfire2.cpp", line 503: error: expected an expression
3945 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3946 ^
3947
>> 3948 "../nrnoc/intfire2.cpp", line 527: error: identifier "_gth" is und
efined
3949 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3950 ^
3951
>> 3952 "../nrnoc/intfire2.cpp", line 527: error: type name is not allowed
3953 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3954 ^
3955
>> 3956 "../nrnoc/intfire2.cpp", line 527: error: expected an expression
3957 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3958 ^
3959
3960 20 errors detected in the compilation of "../nrnoc/intfire2.cpp".
>> 3961 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2584:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o] Error
2
>> 3962 "../nrnoc/intfire4.cpp", line 425: error: identifier "_gth" is und
efined
3963 if (gind) { _globals = _thread[_gth].get<double*>(); }
3964 ^
3965
>> 3966 "../nrnoc/intfire4.cpp", line 425: error: type name is not allowed
3967 if (gind) { _globals = _thread[_gth].get<double*>(); }
3968 ^
3969
>> 3970 "../nrnoc/intfire4.cpp", line 425: error: expected an expression
3971 if (gind) { _globals = _thread[_gth].get<double*>(); }
3972 ^
3973
>> 3974 "../nrnoc/intfire4.cpp", line 454: error: identifier "_gth" is und
efined
3975 if (gind) { _globals = _thread[_gth].get<double*>(); }
3976 ^
3977
>> 3978 "../nrnoc/intfire4.cpp", line 454: error: type name is not allowed
3979 if (gind) { _globals = _thread[_gth].get<double*>(); }
3980 ^
3981
>> 3982 "../nrnoc/intfire4.cpp", line 454: error: expected an expression
3983 if (gind) { _globals = _thread[_gth].get<double*>(); }
3984 ^
3985
>> 3986 "../nrnoc/intfire4.cpp", line 482: error: identifier "_gth" is und
efined
3987 if (gind) { _globals = _thread[_gth].get<double*>(); }
3988 ^
3989
>> 3990 "../nrnoc/intfire4.cpp", line 482: error: type name is not allowed
3991 if (gind) { _globals = _thread[_gth].get<double*>(); }
3992 ^
3993
>> 3994 "../nrnoc/intfire4.cpp", line 482: error: expected an expression
3995 if (gind) { _globals = _thread[_gth].get<double*>(); }
3996 ^
3997
>> 3998 "../nrnoc/intfire4.cpp", line 510: error: identifier "_gth" is und
efined
3999 if (gind) { _globals = _thread[_gth].get<double*>(); }
4000 ^
4001
>> 4002 "../nrnoc/intfire4.cpp", line 510: error: type name is not allowed
4003 if (gind) { _globals = _thread[_gth].get<double*>(); }
4004 ^
4005
>> 4006 "../nrnoc/intfire4.cpp", line 510: error: expected an expression
4007 if (gind) { _globals = _thread[_gth].get<double*>(); }
4008 ^
4009
>> 4010 "../nrnoc/intfire4.cpp", line 538: error: identifier "_gth" is und
efined
4011 if (gind) { _globals = _thread[_gth].get<double*>(); }
4012 ^
4013
>> 4014 "../nrnoc/intfire4.cpp", line 538: error: type name is not allowed
4015 if (gind) { _globals = _thread[_gth].get<double*>(); }
4016 ^
4017
>> 4018 "../nrnoc/intfire4.cpp", line 538: error: expected an expression
4019 if (gind) { _globals = _thread[_gth].get<double*>(); }
4020 ^
4021
>> 4022 "../nrnoc/intfire4.cpp", line 618: error: identifier "_gth" is und
efined
4023 if (gind) { _globals = _thread[_gth].get<double*>(); }
4024 ^
4025
>> 4026 "../nrnoc/intfire4.cpp", line 618: error: type name is not allowed
4027 if (gind) { _globals = _thread[_gth].get<double*>(); }
4028 ^
4029
>> 4030 "../nrnoc/intfire4.cpp", line 618: error: expected an expression
4031 if (gind) { _globals = _thread[_gth].get<double*>(); }
4032 ^
4033
>> 4034 "../nrnoc/intfire4.cpp", line 669: error: identifier "_gth" is und
efined
4035 if (gind) { _globals = _thread[_gth].get<double*>(); }
4036 ^
4037
>> 4038 "../nrnoc/intfire4.cpp", line 669: error: type name is not allowed
4039 if (gind) { _globals = _thread[_gth].get<double*>(); }
4040 ^
4041
>> 4042 "../nrnoc/intfire4.cpp", line 669: error: expected an expression
4043 if (gind) { _globals = _thread[_gth].get<double*>(); }
4044 ^
4045
>> 4046 "../nrnoc/intfire4.cpp", line 697: error: identifier "_gth" is und
efined
4047 if (gind) { _globals = _thread[_gth].get<double*>(); }
4048 ^
4049
>> 4050 "../nrnoc/intfire4.cpp", line 697: error: type name is not allowed
4051 if (gind) { _globals = _thread[_gth].get<double*>(); }
4052 ^
4053
>> 4054 "../nrnoc/intfire4.cpp", line 697: error: expected an expression
4055 if (gind) { _globals = _thread[_gth].get<double*>(); }
4056 ^
4057
>> 4058 "../nrnoc/intfire4.cpp", line 759: error: identifier "_gth" is und
efined
4059 if (gind) { _globals = _thread[_gth].get<double*>(); }
4060 ^
4061
>> 4062 "../nrnoc/intfire4.cpp", line 759: error: type name is not allowed
4063 if (gind) { _globals = _thread[_gth].get<double*>(); }
4064 ^
4065
>> 4066 "../nrnoc/intfire4.cpp", line 759: error: expected an expression
4067 if (gind) { _globals = _thread[_gth].get<double*>(); }
4068 ^
4069
>> 4070 "../nrnoc/intfire4.cpp", line 774: error: identifier "_globals" is
undefined
4071 newstates ( _threadargscomma_ t - t0 ) ;
4072 ^
4073
>> 4074 "../nrnoc/intfire4.cpp", line 825: error: identifier "_gth" is und
efined
4075 if (gind) { _globals = _thread[_gth].get<double*>(); }
4076 ^
4077
>> 4078 "../nrnoc/intfire4.cpp", line 825: error: type name is not allowed
4079 if (gind) { _globals = _thread[_gth].get<double*>(); }
4080 ^
4081
>> 4082 "../nrnoc/intfire4.cpp", line 825: error: expected an expression
4083 if (gind) { _globals = _thread[_gth].get<double*>(); }
4084 ^
4085
>> 4086 "../nrnoc/intfire4.cpp", line 860: error: identifier "_gth" is und
efined
4087 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4088 ^
4089
>> 4090 "../nrnoc/intfire4.cpp", line 860: error: type name is not allowed
4091 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4092 ^
4093
>> 4094 "../nrnoc/intfire4.cpp", line 860: error: expected an expression
4095 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4096 ^
4097
>> 4098 "../nrnoc/intfire4.cpp", line 884: error: identifier "_gth" is und
efined
4099 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4100 ^
4101
>> 4102 "../nrnoc/intfire4.cpp", line 884: error: type name is not allowed
4103 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4104 ^
4105
>> 4106 "../nrnoc/intfire4.cpp", line 884: error: expected an expression
4107 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4108 ^
4109
4110 37 errors detected in the compilation of "../nrnoc/intfire4.cpp".
>> 4111 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2598:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.o] Error
2
4112 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkd
p32koxml2zce4l7v/spack-build-bhqdxpz'
>> 4113 make[1]: *** [CMakeFiles/Makefile2:2920: src/nrniv/CMakeFiles/nrni
v_lib.dir/all] Error 2
4114 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkd
p32koxml2zce4l7v/spack-build-bhqdxpz'
>> 4115 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318265/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-bhqdxpzqgqqe6lkdp32koxml2zce4l7v/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i7n20: task 0: Exited with exit code 1
section_end:1718271084:step_script section_start:1718271084:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=214513 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1318265 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=214594 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1318265 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=214674 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1318265 responseStatus=201 Created token=glcbt-64
section_end:1718271087:upload_artifacts_on_failure section_start:1718271087:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718271088:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-nvhpc-acc-shared.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718269858:resolve_secrets Resolving secrets
section_end:1718269858:resolve_secrets section_start:1718269858:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2952569518, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 216775, build ref , job ID 1318266
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1318266_PROD_P2160_CP3_C4
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2249756
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1318266_PROD_P2160_CP3_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --ntasks=2 --jobid=2249756 --cpus-per-task=8 --mem=160G
section_end:1718269861:prepare_executor section_start:1718269861:prepare_script Preparing environment
Using git from spack modules
Running on r1i7n20 via bbpv1.epfl.ch...
section_end:1718269866:prepare_script section_start:1718269866:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718269868:get_sources section_start:1718269868:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=196542 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1718269876:restore_cache section_start:1718269876:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1318262)...
Runtime platform  arch=amd64 os=linux pid=196842 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1318262 responseStatus=200 OK token=glcbt-64
section_end:1718269877:download_artifacts section_start:1718269877:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775/J1318266_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/d3mdhq7gjxncmj42lvxjtytypcjqpwmf
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2249756/ccache
Config file: /nvme/bbpcihpcproj12/2249756/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Thu Jun 13 11:11:27 2024
Local storage:
Cache size (GB): 0.46 / 0.51 (89.59%)
Files: 9888
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/d3mdhq7gjxncmj42lvxjtytypcjqpwmf
Concretized
--------------------------------
- omhoaqn neuron@git.dbfe86634a09cf2329eea04707f711237ed86e76=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] d3mdhq7 ^nmodl@git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb_develop-d3mdhq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
==> Installing neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76=develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc [50/50]
==> No binary for neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76=develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
161 errors found in build log:
2878 [ 26%] Running nrnivmodl-core with internal mod files
2879 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318266/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-bu
ild-omhoaqn/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak
e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P216775/J1318266/spack-build/spack-stage-neuron-git.dbfe866
34a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v
7e4xdikc/spack-build-omhoaqn/bin/nrnivmodl-core -b SHARED -m /gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/i
nstall_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0df7
082f7ea5cb_develop-d3mdhq/bin/nmodl -n internal -p 4 .
2880 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neuron
-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us
5jvgw5alu27v7e4xdikc/spack-build-omhoaqn/bin', compiling default o
nes only!
2881 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvg
w5alu27v7e4xdikc/spack-build-omhoaqn/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P216775/J1318266/spack-build/spack-stage-neuron-git.dbfe86634a
09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4
xdikc/spack-build-omhoaqn MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software
/install_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0d
f7082f7ea5cb_develop-d3mdhq/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
2882 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neuron-gi
t.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jv
gw5alu27v7e4xdikc/spack-build-omhoaqn/bin'
2883 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2884 make[3]: xcrun: No such file or directory
2885 Default NMODL flags:
>> 2886 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
2887 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2888 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2889 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2890 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
2891 "../../../spack-src/external/eigen/Eigen/src/Core/arch/AVX/PacketM
ath.h", line 984: warning: integer conversion resulted in a change
of sign [integer_sign_change]
2892 const __m128i sign_mask = _mm_set1_epi16(static_cast<numext::u
int16_t>(0x8000));
...
3496 [ 34%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/n
rnoc/intfire1.cpp.o
3497 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318266/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-bu
ild-omhoaqn/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318260/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-st
age-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-om
hoaqnlw5us5jvgw5alu27v7e4xdikc/spack-build-omhoaqn/include -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/s
pack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71123
7ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-src/src/iv
oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/
J1318266/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0
4707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-
src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P216775/J1318266/spack-build/spack-stage-neuron-git.dbfe8663
4a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7
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p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318266/spack-build/spack-stage-neuron-git.db
fe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5a
lu27v7e4xdikc/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neu
ron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw
5us5jvgw5alu27v7e4xdikc/spack-src/src/nrnpython/.. -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-bui
ld/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76
_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-src/src/nrnpython/
../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2167
75/J1318266/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329e
ea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spa
ck-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neuron
-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us
5jvgw5alu27v7e4xdikc/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-b
uild/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e
76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-src/src/nrnpytho
n/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P216775/J1318266/spack-build/spack-stage-neuron-git.dbfe86634a09cf
2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdik
c/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-
neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaq
nlw5us5jvgw5alu27v7e4xdikc/spack-src/src/nrnpython/../ivos -I/gpfs
/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1
2.3.0-skylake/python-3.11.6-bj4i6m/include/python3.11 -isystem /gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266
/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711
237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-src/exte
rnal/eigen -tp haswell -g -O1 -fno-omit-frame-pointer --c++17 -fP
IC --diag_suppress=1,47,111,128,170,174,177,186,541,550,816,2465 -
noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/
intfire2.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.
o.d -o CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o -c /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spa
ck-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237e
d86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-build-omhoaq
n/src/nrnoc/intfire2.cpp
3500 [ 35%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/n
rnoc/intfire4.cpp.o
3501 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318266/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-bu
ild-omhoaqn/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318260/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_ENABLE_THREADS -DOMPI_SKIP_MP
ICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/gpfs/bbp.cscs.ch/ssd/gi
tlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-st
age-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-om
hoaqnlw5us5jvgw5alu27v7e4xdikc/spack-build-omhoaqn/include -I/gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/s
pack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71123
7ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-src/src/iv
oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/
J1318266/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0
4707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-
src/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P216775/J1318266/spack-build/spack-stage-neuron-git.dbfe8663
4a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7
e4xdikc/spack-src/src/nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neuron-g
it.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5j
vgw5alu27v7e4xdikc/spack-src/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/git
lab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-sta
ge-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omh
oaqnlw5us5jvgw5alu27v7e4xdikc/spack-src/src/oc -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/s
pack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_dev
elop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-build-omhoaqn -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/sp
ack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237
ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-build-omhoa
qn/src/nrncvode -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr
oj12/P216775/J1318266/spack-build/spack-stage-neuron-git.dbfe86634
a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e
4xdikc/spack-build-omhoaqn/src/nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitla
b_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage
-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoa
qnlw5us5jvgw5alu27v7e4xdikc/spack-build-omhoaqn/src/nrnpython -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
6/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
1237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-build-o
mhoaqn/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj
12/P216775/J1318266/spack-build/spack-stage-neuron-git.dbfe86634a0
9cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4x
dikc/spack-build-omhoaqn/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitl
ab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stag
e-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omho
aqnlw5us5jvgw5alu27v7e4xdikc/spack-build-omhoaqn/src/sundials -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
6/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
1237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-build-o
mhoaqn/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neuron-gi
t.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jv
gw5alu27v7e4xdikc/spack-src/src -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neur
on-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5
us5jvgw5alu27v7e4xdikc/spack-src/src/gnu -I/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-s
tage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-o
mhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-src/src/nrnmpi -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-b
uild/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e
76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-src/src/nrnpytho
n -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J
1318266/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04
707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-s
rc/src/parallel -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpr
oj12/P216775/J1318266/spack-build/spack-stage-neuron-git.dbfe86634
a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e
4xdikc/spack-src/src/scopmath -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neuron
-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us
5jvgw5alu27v7e4xdikc/spack-src/src/sparse -I/gpfs/bbp.cscs.ch/ssd/
gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-
stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-
omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-src/src/sparse13 -I/gpfs/bb
p.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spac
k-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed
86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-src/src/sundi
als -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
/J1318266/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea
04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack
-src/src/sundials/cvodes -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neuron-git.
dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw
5alu27v7e4xdikc/spack-src/src/sundials/ida -I/gpfs/bbp.cscs.ch/ssd
/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/spack
-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop
-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-src/src/sundials/shared -I
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318
266/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f
711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-build
-omhoaqn/src/nrniv/oc_generated -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2
024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.
p1.hmpt-6rr256/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318266/spack-build/spack-stage-neuron-git.db
fe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5a
lu27v7e4xdikc/spack-src/src/ivos -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neu
ron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw
5us5jvgw5alu27v7e4xdikc/spack-src/src/nrnpython/.. -I/gpfs/bbp.csc
s.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-bui
ld/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76
_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-src/src/nrnpython/
../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2167
75/J1318266/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329e
ea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spa
ck-src/src/nrnpython/../nrnoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neuron
-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us
5jvgw5alu27v7e4xdikc/spack-src/src/nrnpython/../ivoc -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-b
uild/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e
76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-src/src/nrnpytho
n/../nrniv -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P216775/J1318266/spack-build/spack-stage-neuron-git.dbfe86634a09cf
2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdik
c/spack-src/src/nrnpython/../nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-
neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaq
nlw5us5jvgw5alu27v7e4xdikc/spack-src/src/nrnpython/../ivos -I/gpfs
/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-1
2.3.0-skylake/python-3.11.6-bj4i6m/include/python3.11 -isystem /gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266
/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711
237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-src/exte
rnal/eigen -tp haswell -g -O1 -fno-omit-frame-pointer --c++17 -fP
IC --diag_suppress=1,47,111,128,170,174,177,186,541,550,816,2465 -
noswitcherror -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/
intfire4.cpp.o -MF CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.
o.d -o CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.o -c /gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spa
ck-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237e
d86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-build-omhoaq
n/src/nrnoc/intfire4.cpp
>> 3502 "../nrnoc/apcount.cpp", line 286: error: identifier "_gth" is unde
fined
3503 if (gind) { _globals = _thread[_gth].get<double*>(); }
3504 ^
3505
>> 3506 "../nrnoc/apcount.cpp", line 286: error: type name is not allowed
3507 if (gind) { _globals = _thread[_gth].get<double*>(); }
3508 ^
3509
>> 3510 "../nrnoc/apcount.cpp", line 286: error: expected an expression
3511 if (gind) { _globals = _thread[_gth].get<double*>(); }
3512 ^
3513
>> 3514 "../nrnoc/apcount.cpp", line 317: error: identifier "_gth" is unde
fined
3515 if (gind) { _globals = _thread[_gth].get<double*>(); }
3516 ^
3517
>> 3518 "../nrnoc/apcount.cpp", line 317: error: type name is not allowed
3519 if (gind) { _globals = _thread[_gth].get<double*>(); }
3520 ^
3521
>> 3522 "../nrnoc/apcount.cpp", line 317: error: expected an expression
3523 if (gind) { _globals = _thread[_gth].get<double*>(); }
3524 ^
3525
>> 3526 "../nrnoc/apcount.cpp", line 350: error: identifier "_gth" is unde
fined
3527 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3528 ^
3529
>> 3530 "../nrnoc/apcount.cpp", line 350: error: type name is not allowed
3531 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3532 ^
3533
>> 3534 "../nrnoc/apcount.cpp", line 350: error: expected an expression
3535 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3536 ^
3537
>> 3538 "../nrnoc/apcount.cpp", line 377: error: identifier "_gth" is unde
fined
3539 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3540 ^
3541
>> 3542 "../nrnoc/apcount.cpp", line 377: error: type name is not allowed
3543 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3544 ^
3545
>> 3546 "../nrnoc/apcount.cpp", line 377: error: expected an expression
3547 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3548 ^
3549
>> 3550 "../nrnoc/apcount.cpp", line 397: error: identifier "_gth" is unde
fined
3551 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3552 ^
3553
>> 3554 "../nrnoc/apcount.cpp", line 397: error: type name is not allowed
3555 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3556 ^
3557
>> 3558 "../nrnoc/apcount.cpp", line 397: error: expected an expression
3559 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3560 ^
3561
>> 3562 "../nrnoc/apcount.cpp", line 415: error: identifier "_gth" is unde
fined
3563 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3564 ^
3565
>> 3566 "../nrnoc/apcount.cpp", line 415: error: type name is not allowed
3567 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3568 ^
3569
>> 3570 "../nrnoc/apcount.cpp", line 415: error: expected an expression
3571 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3572 ^
3573
3574 18 errors detected in the compilation of "../nrnoc/apcount.cpp".
>> 3575 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2500:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/apcount.cpp.o] Error 2
3576 make[2]: *** Waiting for unfinished jobs....
>> 3577 "../nrnoc/exp2syn.cpp", line 360: error: identifier "_gth" is unde
fined
3578 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3579 ^
3580
>> 3581 "../nrnoc/exp2syn.cpp", line 360: error: type name is not allowed
3582 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3583 ^
3584
>> 3585 "../nrnoc/exp2syn.cpp", line 360: error: expected an expression
3586 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3587 ^
3588
>> 3589 "../nrnoc/exp2syn.cpp", line 393: error: identifier "_gth" is unde
fined
3590 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3591 ^
3592
>> 3593 "../nrnoc/exp2syn.cpp", line 393: error: type name is not allowed
3594 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3595 ^
3596
>> 3597 "../nrnoc/exp2syn.cpp", line 393: error: expected an expression
3598 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3599 ^
3600
>> 3601 "../nrnoc/exp2syn.cpp", line 433: error: identifier "_gth" is unde
fined
3602 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3603 ^
3604
>> 3605 "../nrnoc/exp2syn.cpp", line 433: error: type name is not allowed
3606 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3607 ^
3608
>> 3609 "../nrnoc/exp2syn.cpp", line 433: error: expected an expression
3610 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3611 ^
3612
>> 3613 "../nrnoc/exp2syn.cpp", line 466: error: identifier "_gth" is unde
fined
3614 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3615 ^
3616
>> 3617 "../nrnoc/exp2syn.cpp", line 466: error: type name is not allowed
3618 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3619 ^
3620
>> 3621 "../nrnoc/exp2syn.cpp", line 466: error: expected an expression
3622 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3623 ^
3624
>> 3625 "../nrnoc/exp2syn.cpp", line 493: error: identifier "_gth" is unde
fined
3626 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3627 ^
3628
>> 3629 "../nrnoc/exp2syn.cpp", line 493: error: type name is not allowed
3630 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3631 ^
3632
>> 3633 "../nrnoc/exp2syn.cpp", line 493: error: expected an expression
3634 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3635 ^
3636
>> 3637 "../nrnoc/exp2syn.cpp", line 511: error: identifier "_gth" is unde
fined
3638 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3639 ^
3640
>> 3641 "../nrnoc/exp2syn.cpp", line 511: error: type name is not allowed
3642 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3643 ^
3644
>> 3645 "../nrnoc/exp2syn.cpp", line 511: error: expected an expression
3646 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3647 ^
3648
3649 18 errors detected in the compilation of "../nrnoc/exp2syn.cpp".
>> 3650 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2514:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/exp2syn.cpp.o] Error 2
>> 3651 "../nrnoc/expsyn.cpp", line 323: error: identifier "_gth" is undef
ined
3652 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3653 ^
3654
>> 3655 "../nrnoc/expsyn.cpp", line 323: error: type name is not allowed
3656 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3657 ^
3658
>> 3659 "../nrnoc/expsyn.cpp", line 323: error: expected an expression
3660 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3661 ^
3662
>> 3663 "../nrnoc/expsyn.cpp", line 356: error: identifier "_gth" is undef
ined
3664 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3665 ^
3666
>> 3667 "../nrnoc/expsyn.cpp", line 356: error: type name is not allowed
3668 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3669 ^
3670
>> 3671 "../nrnoc/expsyn.cpp", line 356: error: expected an expression
3672 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3673 ^
3674
>> 3675 "../nrnoc/expsyn.cpp", line 384: error: identifier "_gth" is undef
ined
3676 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3677 ^
3678
>> 3679 "../nrnoc/expsyn.cpp", line 384: error: type name is not allowed
3680 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3681 ^
3682
>> 3683 "../nrnoc/expsyn.cpp", line 384: error: expected an expression
3684 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3685 ^
3686
>> 3687 "../nrnoc/expsyn.cpp", line 416: error: identifier "_gth" is undef
ined
3688 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3689 ^
3690
>> 3691 "../nrnoc/expsyn.cpp", line 416: error: type name is not allowed
3692 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3693 ^
3694
>> 3695 "../nrnoc/expsyn.cpp", line 416: error: expected an expression
3696 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3697 ^
3698
>> 3699 "../nrnoc/expsyn.cpp", line 443: error: identifier "_gth" is undef
ined
3700 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3701 ^
3702
>> 3703 "../nrnoc/expsyn.cpp", line 443: error: type name is not allowed
3704 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3705 ^
3706
>> 3707 "../nrnoc/expsyn.cpp", line 443: error: expected an expression
3708 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3709 ^
3710
>> 3711 "../nrnoc/expsyn.cpp", line 461: error: identifier "_gth" is undef
ined
3712 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3713 ^
3714
>> 3715 "../nrnoc/expsyn.cpp", line 461: error: type name is not allowed
3716 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3717 ^
3718
>> 3719 "../nrnoc/expsyn.cpp", line 461: error: expected an expression
3720 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3721 ^
3722
3723 18 errors detected in the compilation of "../nrnoc/expsyn.cpp".
>> 3724 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2528:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/expsyn.cpp.o] Error 2
>> 3725 "../nrnoc/hh.cpp", line 438: error: identifier "_gth" is undefined
3726 if (gind) { _globals = _thread[_gth].get<double*>(); }
3727 ^
3728
>> 3729 "../nrnoc/hh.cpp", line 438: error: type name is not allowed
3730 if (gind) { _globals = _thread[_gth].get<double*>(); }
3731 ^
3732
>> 3733 "../nrnoc/hh.cpp", line 438: error: expected an expression
3734 if (gind) { _globals = _thread[_gth].get<double*>(); }
3735 ^
3736
>> 3737 "../nrnoc/hh.cpp", line 454: error: identifier "_gth" is undefined
3738 if (gind) { _globals = _thread[_gth].get<double*>(); }
3739 ^
3740
>> 3741 "../nrnoc/hh.cpp", line 454: error: type name is not allowed
3742 if (gind) { _globals = _thread[_gth].get<double*>(); }
3743 ^
3744
>> 3745 "../nrnoc/hh.cpp", line 454: error: expected an expression
3746 if (gind) { _globals = _thread[_gth].get<double*>(); }
3747 ^
3748
>> 3749 "../nrnoc/hh.cpp", line 484: error: identifier "_gth" is undefined
3750 if (gind) { _globals = _thread[_gth].get<double*>(); }
3751 ^
3752
>> 3753 "../nrnoc/hh.cpp", line 484: error: type name is not allowed
3754 if (gind) { _globals = _thread[_gth].get<double*>(); }
3755 ^
3756
>> 3757 "../nrnoc/hh.cpp", line 484: error: expected an expression
3758 if (gind) { _globals = _thread[_gth].get<double*>(); }
3759 ^
3760
>> 3761 "../nrnoc/hh.cpp", line 499: error: identifier "_gth" is undefined
3762 if (gind) { _globals = _thread[_gth].get<double*>(); }
3763 ^
3764
>> 3765 "../nrnoc/hh.cpp", line 499: error: type name is not allowed
3766 if (gind) { _globals = _thread[_gth].get<double*>(); }
3767 ^
3768
>> 3769 "../nrnoc/hh.cpp", line 499: error: expected an expression
3770 if (gind) { _globals = _thread[_gth].get<double*>(); }
3771 ^
3772
>> 3773 "../nrnoc/hh.cpp", line 517: error: identifier "_gth" is undefined
3774 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3775 ^
3776
>> 3777 "../nrnoc/hh.cpp", line 517: error: type name is not allowed
3778 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3779 ^
3780
>> 3781 "../nrnoc/hh.cpp", line 517: error: expected an expression
3782 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3783 ^
3784
>> 3785 "../nrnoc/hh.cpp", line 552: error: identifier "_gth" is undefined
3786 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3787 ^
3788
>> 3789 "../nrnoc/hh.cpp", line 552: error: type name is not allowed
3790 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3791 ^
3792
>> 3793 "../nrnoc/hh.cpp", line 552: error: expected an expression
3794 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3795 ^
3796
>> 3797 "../nrnoc/hh.cpp", line 587: error: identifier "_gth" is undefined
3798 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3799 ^
3800
>> 3801 "../nrnoc/hh.cpp", line 587: error: type name is not allowed
3802 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3803 ^
3804
>> 3805 "../nrnoc/hh.cpp", line 587: error: expected an expression
3806 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3807 ^
3808
>> 3809 "../nrnoc/hh.cpp", line 626: error: identifier "_gth" is undefined
3810 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3811 ^
3812
>> 3813 "../nrnoc/hh.cpp", line 626: error: type name is not allowed
3814 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3815 ^
3816
>> 3817 "../nrnoc/hh.cpp", line 626: error: expected an expression
3818 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3819 ^
3820
>> 3821 "../nrnoc/hh.cpp", line 661: error: identifier "_gth" is undefined
3822 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3823 ^
3824
>> 3825 "../nrnoc/hh.cpp", line 661: error: type name is not allowed
3826 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3827 ^
3828
>> 3829 "../nrnoc/hh.cpp", line 661: error: expected an expression
3830 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3831 ^
3832
>> 3833 "../nrnoc/hh.cpp", line 679: error: identifier "_gth" is undefined
3834 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3835 ^
3836
>> 3837 "../nrnoc/hh.cpp", line 679: error: type name is not allowed
3838 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3839 ^
3840
>> 3841 "../nrnoc/hh.cpp", line 679: error: expected an expression
3842 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3843 ^
3844
3845 30 errors detected in the compilation of "../nrnoc/hh.cpp".
>> 3846 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2556:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/hh.cpp.o] Error 2
>> 3847 "../nrnoc/intfire1.cpp", line 282: error: identifier "_gth" is und
efined
3848 if (gind) { _globals = _thread[_gth].get<double*>(); }
3849 ^
3850
>> 3851 "../nrnoc/intfire1.cpp", line 282: error: type name is not allowed
3852 if (gind) { _globals = _thread[_gth].get<double*>(); }
3853 ^
3854
>> 3855 "../nrnoc/intfire1.cpp", line 282: error: expected an expression
3856 if (gind) { _globals = _thread[_gth].get<double*>(); }
3857 ^
3858
>> 3859 "../nrnoc/intfire1.cpp", line 336: error: identifier "_gth" is und
efined
3860 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3861 ^
3862
>> 3863 "../nrnoc/intfire1.cpp", line 336: error: type name is not allowed
3864 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3865 ^
3866
>> 3867 "../nrnoc/intfire1.cpp", line 336: error: expected an expression
3868 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3869 ^
3870
>> 3871 "../nrnoc/intfire1.cpp", line 360: error: identifier "_gth" is und
efined
3872 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3873 ^
3874
>> 3875 "../nrnoc/intfire1.cpp", line 360: error: type name is not allowed
3876 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3877 ^
3878
>> 3879 "../nrnoc/intfire1.cpp", line 360: error: expected an expression
3880 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3881 ^
3882
3883 9 errors detected in the compilation of "../nrnoc/intfire1.cpp".
>> 3884 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2570:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire1.cpp.o] Error
2
>> 3885 "../nrnoc/intfire2.cpp", line 294: error: identifier "_gth" is und
efined
3886 if (gind) { _globals = _thread[_gth].get<double*>(); }
3887 ^
3888
>> 3889 "../nrnoc/intfire2.cpp", line 294: error: type name is not allowed
3890 if (gind) { _globals = _thread[_gth].get<double*>(); }
3891 ^
3892
>> 3893 "../nrnoc/intfire2.cpp", line 294: error: expected an expression
3894 if (gind) { _globals = _thread[_gth].get<double*>(); }
3895 ^
3896
>> 3897 "../nrnoc/intfire2.cpp", line 324: error: identifier "_gth" is und
efined
3898 if (gind) { _globals = _thread[_gth].get<double*>(); }
3899 ^
3900
>> 3901 "../nrnoc/intfire2.cpp", line 324: error: type name is not allowed
3902 if (gind) { _globals = _thread[_gth].get<double*>(); }
3903 ^
3904
>> 3905 "../nrnoc/intfire2.cpp", line 324: error: expected an expression
3906 if (gind) { _globals = _thread[_gth].get<double*>(); }
3907 ^
3908
>> 3909 "../nrnoc/intfire2.cpp", line 347: error: identifier "_globals" is
undefined
3910 artcell_net_send ( _tqitem, _args, _pnt, t + firetime ( _t
hreadargscomma_ ib , _libf , 0.0 ) , 1.0 ) ;
3911 ^
3912
>> 3913 "../nrnoc/intfire2.cpp", line 357: error: identifier "_globals" is
undefined
3914 artcell_net_move ( _tqitem, _pnt, firetime ( _threadargsc
omma_ ib , _libf , m ) + t ) ;
3915 ^
3916
>> 3917 "../nrnoc/intfire2.cpp", line 418: error: identifier "_gth" is und
efined
3918 if (gind) { _globals = _thread[_gth].get<double*>(); }
3919 ^
3920
>> 3921 "../nrnoc/intfire2.cpp", line 418: error: type name is not allowed
3922 if (gind) { _globals = _thread[_gth].get<double*>(); }
3923 ^
3924
>> 3925 "../nrnoc/intfire2.cpp", line 418: error: expected an expression
3926 if (gind) { _globals = _thread[_gth].get<double*>(); }
3927 ^
3928
>> 3929 "../nrnoc/intfire2.cpp", line 472: error: identifier "_gth" is und
efined
3930 if (gind) { _globals = _thread[_gth].get<double*>(); }
3931 ^
3932
>> 3933 "../nrnoc/intfire2.cpp", line 472: error: type name is not allowed
3934 if (gind) { _globals = _thread[_gth].get<double*>(); }
3935 ^
3936
>> 3937 "../nrnoc/intfire2.cpp", line 472: error: expected an expression
3938 if (gind) { _globals = _thread[_gth].get<double*>(); }
3939 ^
3940
>> 3941 "../nrnoc/intfire2.cpp", line 503: error: identifier "_gth" is und
efined
3942 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3943 ^
3944
>> 3945 "../nrnoc/intfire2.cpp", line 503: error: type name is not allowed
3946 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3947 ^
3948
>> 3949 "../nrnoc/intfire2.cpp", line 503: error: expected an expression
3950 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3951 ^
3952
>> 3953 "../nrnoc/intfire2.cpp", line 527: error: identifier "_gth" is und
efined
3954 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3955 ^
3956
>> 3957 "../nrnoc/intfire2.cpp", line 527: error: type name is not allowed
3958 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3959 ^
3960
>> 3961 "../nrnoc/intfire2.cpp", line 527: error: expected an expression
3962 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3963 ^
3964
3965 20 errors detected in the compilation of "../nrnoc/intfire2.cpp".
>> 3966 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2584:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o] Error
2
>> 3967 "../nrnoc/intfire4.cpp", line 425: error: identifier "_gth" is und
efined
3968 if (gind) { _globals = _thread[_gth].get<double*>(); }
3969 ^
3970
>> 3971 "../nrnoc/intfire4.cpp", line 425: error: type name is not allowed
3972 if (gind) { _globals = _thread[_gth].get<double*>(); }
3973 ^
3974
>> 3975 "../nrnoc/intfire4.cpp", line 425: error: expected an expression
3976 if (gind) { _globals = _thread[_gth].get<double*>(); }
3977 ^
3978
>> 3979 "../nrnoc/intfire4.cpp", line 454: error: identifier "_gth" is und
efined
3980 if (gind) { _globals = _thread[_gth].get<double*>(); }
3981 ^
3982
>> 3983 "../nrnoc/intfire4.cpp", line 454: error: type name is not allowed
3984 if (gind) { _globals = _thread[_gth].get<double*>(); }
3985 ^
3986
>> 3987 "../nrnoc/intfire4.cpp", line 454: error: expected an expression
3988 if (gind) { _globals = _thread[_gth].get<double*>(); }
3989 ^
3990
>> 3991 "../nrnoc/intfire4.cpp", line 482: error: identifier "_gth" is und
efined
3992 if (gind) { _globals = _thread[_gth].get<double*>(); }
3993 ^
3994
>> 3995 "../nrnoc/intfire4.cpp", line 482: error: type name is not allowed
3996 if (gind) { _globals = _thread[_gth].get<double*>(); }
3997 ^
3998
>> 3999 "../nrnoc/intfire4.cpp", line 482: error: expected an expression
4000 if (gind) { _globals = _thread[_gth].get<double*>(); }
4001 ^
4002
>> 4003 "../nrnoc/intfire4.cpp", line 510: error: identifier "_gth" is und
efined
4004 if (gind) { _globals = _thread[_gth].get<double*>(); }
4005 ^
4006
>> 4007 "../nrnoc/intfire4.cpp", line 510: error: type name is not allowed
4008 if (gind) { _globals = _thread[_gth].get<double*>(); }
4009 ^
4010
>> 4011 "../nrnoc/intfire4.cpp", line 510: error: expected an expression
4012 if (gind) { _globals = _thread[_gth].get<double*>(); }
4013 ^
4014
>> 4015 "../nrnoc/intfire4.cpp", line 538: error: identifier "_gth" is und
efined
4016 if (gind) { _globals = _thread[_gth].get<double*>(); }
4017 ^
4018
>> 4019 "../nrnoc/intfire4.cpp", line 538: error: type name is not allowed
4020 if (gind) { _globals = _thread[_gth].get<double*>(); }
4021 ^
4022
>> 4023 "../nrnoc/intfire4.cpp", line 538: error: expected an expression
4024 if (gind) { _globals = _thread[_gth].get<double*>(); }
4025 ^
4026
>> 4027 "../nrnoc/intfire4.cpp", line 618: error: identifier "_gth" is und
efined
4028 if (gind) { _globals = _thread[_gth].get<double*>(); }
4029 ^
4030
>> 4031 "../nrnoc/intfire4.cpp", line 618: error: type name is not allowed
4032 if (gind) { _globals = _thread[_gth].get<double*>(); }
4033 ^
4034
>> 4035 "../nrnoc/intfire4.cpp", line 618: error: expected an expression
4036 if (gind) { _globals = _thread[_gth].get<double*>(); }
4037 ^
4038
>> 4039 "../nrnoc/intfire4.cpp", line 669: error: identifier "_gth" is und
efined
4040 if (gind) { _globals = _thread[_gth].get<double*>(); }
4041 ^
4042
>> 4043 "../nrnoc/intfire4.cpp", line 669: error: type name is not allowed
4044 if (gind) { _globals = _thread[_gth].get<double*>(); }
4045 ^
4046
>> 4047 "../nrnoc/intfire4.cpp", line 669: error: expected an expression
4048 if (gind) { _globals = _thread[_gth].get<double*>(); }
4049 ^
4050
>> 4051 "../nrnoc/intfire4.cpp", line 697: error: identifier "_gth" is und
efined
4052 if (gind) { _globals = _thread[_gth].get<double*>(); }
4053 ^
4054
>> 4055 "../nrnoc/intfire4.cpp", line 697: error: type name is not allowed
4056 if (gind) { _globals = _thread[_gth].get<double*>(); }
4057 ^
4058
>> 4059 "../nrnoc/intfire4.cpp", line 697: error: expected an expression
4060 if (gind) { _globals = _thread[_gth].get<double*>(); }
4061 ^
4062
>> 4063 "../nrnoc/intfire4.cpp", line 759: error: identifier "_gth" is und
efined
4064 if (gind) { _globals = _thread[_gth].get<double*>(); }
4065 ^
4066
>> 4067 "../nrnoc/intfire4.cpp", line 759: error: type name is not allowed
4068 if (gind) { _globals = _thread[_gth].get<double*>(); }
4069 ^
4070
>> 4071 "../nrnoc/intfire4.cpp", line 759: error: expected an expression
4072 if (gind) { _globals = _thread[_gth].get<double*>(); }
4073 ^
4074
>> 4075 "../nrnoc/intfire4.cpp", line 774: error: identifier "_globals" is
undefined
4076 newstates ( _threadargscomma_ t - t0 ) ;
4077 ^
4078
>> 4079 "../nrnoc/intfire4.cpp", line 825: error: identifier "_gth" is und
efined
4080 if (gind) { _globals = _thread[_gth].get<double*>(); }
4081 ^
4082
>> 4083 "../nrnoc/intfire4.cpp", line 825: error: type name is not allowed
4084 if (gind) { _globals = _thread[_gth].get<double*>(); }
4085 ^
4086
>> 4087 "../nrnoc/intfire4.cpp", line 825: error: expected an expression
4088 if (gind) { _globals = _thread[_gth].get<double*>(); }
4089 ^
4090
>> 4091 "../nrnoc/intfire4.cpp", line 860: error: identifier "_gth" is und
efined
4092 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4093 ^
4094
>> 4095 "../nrnoc/intfire4.cpp", line 860: error: type name is not allowed
4096 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4097 ^
4098
>> 4099 "../nrnoc/intfire4.cpp", line 860: error: expected an expression
4100 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4101 ^
4102
>> 4103 "../nrnoc/intfire4.cpp", line 884: error: identifier "_gth" is und
efined
4104 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4105 ^
4106
>> 4107 "../nrnoc/intfire4.cpp", line 884: error: type name is not allowed
4108 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4109 ^
4110
>> 4111 "../nrnoc/intfire4.cpp", line 884: error: expected an expression
4112 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4113 ^
4114
4115 37 errors detected in the compilation of "../nrnoc/intfire4.cpp".
>> 4116 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2598:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.o] Error
2
4117 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvg
w5alu27v7e4xdikc/spack-build-omhoaqn'
>> 4118 make[1]: *** [CMakeFiles/Makefile2:2932: src/nrniv/CMakeFiles/nrni
v_lib.dir/all] Error 2
4119 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvg
w5alu27v7e4xdikc/spack-build-omhoaqn'
>> 4120 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318266/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-omhoaqnlw5us5jvgw5alu27v7e4xdikc/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i7n20: task 0: Exited with exit code 1
section_end:1718271084:step_script section_start:1718271084:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=214457 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1318266 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=214556 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1318266 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=214635 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1318266 responseStatus=201 Created token=glcbt-64
section_end:1718271086:upload_artifacts_on_failure section_start:1718271086:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718271087:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-nvhpc-omp-legacy.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718269859:resolve_secrets Resolving secrets
section_end:1718269859:resolve_secrets section_start:1718269859:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor371183835, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 216775, build ref , job ID 1318267
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1318267_PROD_P2160_CP4_C5
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2249757
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1318267_PROD_P2160_CP4_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --ntasks=2 --jobid=2249757 --cpus-per-task=8 --mem=160G
section_end:1718269860:prepare_executor section_start:1718269860:prepare_script Preparing environment
Using git from spack modules
Running on r1i7n21 via bbpv1.epfl.ch...
section_end:1718269867:prepare_script section_start:1718269867:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718269868:get_sources section_start:1718269868:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=41326 revision=58ba2b95 version=14.2.0
Downloading cache.zip from https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected
Successfully extracted cache
section_end:1718269877:restore_cache section_start:1718269877:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1318262)...
Runtime platform  arch=amd64 os=linux pid=41917 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1318262 responseStatus=200 OK token=glcbt-64
section_end:1718269878:download_artifacts section_start:1718269878:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775/J1318267_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/d3mdhq7gjxncmj42lvxjtytypcjqpwmf
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2249757/ccache
Config file: /nvme/bbpcihpcproj12/2249757/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Thu Jun 13 11:11:24 2024
Local storage:
Cache size (GB): 0.47 / 0.51 (91.59%)
Files: 10762
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/d3mdhq7gjxncmj42lvxjtytypcjqpwmf
- ^caliper+cuda cuda_arch=70
Concretized
--------------------------------
- pnciyo3 neuron@git.dbfe86634a09cf2329eea04707f711237ed86e76=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
- vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake
[^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] d3mdhq7 ^nmodl@git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g [41/55]
==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g
Stage: 1.32s. Cmake: 4.57s. Build: 1.23s. Install: 0.10s. Post-install: 0.11s. Total: 7.50s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb_develop-d3mdhq
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp
==> Installing neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76=develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr [55/55]
==> No binary for neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76=develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
161 errors found in build log:
2878 [ 29%] Running nrnivmodl-core with internal mod files
2879 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-bu
ild-pnciyo3/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak
e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P216775/J1318267/spack-build/spack-stage-neuron-git.dbfe866
34a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij
5yvzudhr/spack-build-pnciyo3/bin/nrnivmodl-core -b STATIC -m /gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/i
nstall_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0df7
082f7ea5cb_develop-d3mdhq/bin/nmodl -n internal -p 4 .
2880 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron
-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwer
nrrc3qhpzaij5yvzudhr/spack-build-pnciyo3/bin', compiling default o
nes only!
2881 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc
3qhpzaij5yvzudhr/spack-build-pnciyo3/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P216775/J1318267/spack-build/spack-stage-neuron-git.dbfe86634a
09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yv
zudhr/spack-build-pnciyo3 MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software
/install_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0d
f7082f7ea5cb_develop-d3mdhq/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
2882 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-gi
t.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrr
c3qhpzaij5yvzudhr/spack-build-pnciyo3/bin'
2883 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2884 make[3]: xcrun: No such file or directory
2885 Default NMODL flags:
>> 2886 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
2887 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2888 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2889 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2890 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
2891 "../../../spack-src/external/eigen/Eigen/src/Core/arch/AVX/PacketM
ath.h", line 984: warning: integer conversion resulted in a change
of sign [integer_sign_change]
2892 const __m128i sign_mask = _mm_set1_epi16(static_cast<numext::u
int16_t>(0x8000));
...
3494 [ 36%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/n
rnoc/intfire1.cpp.o
3495 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-bu
ild-pnciyo3/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318260/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
/J1318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea
04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack
-build-pnciyo3/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-git.db
fe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qh
pzaij5yvzudhr/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neu
ron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uu
wernrrc3qhpzaij5yvzudhr/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-build/s
pack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_dev
elop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src/src/nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/sp
ack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237
ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src/src/nrn
oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/
J1318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0
4707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-
src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P216775/J1318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf
2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudh
r/spack-build-pnciyo3 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-git.dbf
e86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhp
zaij5yvzudhr/spack-build-pnciyo3/src/nrncvode -I/gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-build/sp
ack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_deve
lop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-build-pnciyo3/src/nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-bu
ild-pnciyo3/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc
3qhpzaij5yvzudhr/spack-build-pnciyo3/src/oc -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-build/spac
k-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develo
p-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-build-pnciyo3/src/paralle
l -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J
1318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04
707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-b
uild-pnciyo3/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc
3qhpzaij5yvzudhr/spack-build-pnciyo3/src/sundials/shared -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spa
ck-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237e
d86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src/src -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
7/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
1237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src/src
/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21677
5/J1318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329ee
a04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spac
k-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P216775/J1318267/spack-build/spack-stage-neuron-git.dbfe8663
4a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5
yvzudhr/spack-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neur
on-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuw
ernrrc3qhpzaij5yvzudhr/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-build/sp
ack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_deve
lop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src/src/scopmath -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/
spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f7112
37ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src/src/s
parse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2167
75/J1318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329e
ea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spa
ck-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P216775/J1318267/spack-build/spack-stage-neuron-git.dbfe8
6634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpza
ij5yvzudhr/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-ne
uron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3u
uwernrrc3qhpzaij5yvzudhr/spack-src/src/sundials/cvodes -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack
-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed8
6e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src/src/sundia
ls/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216
775/J1318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329
eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/sp
ack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-g
it.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernr
rc3qhpzaij5yvzudhr/spack-build-pnciyo3/src/nrniv/oc_generated -I/g
pfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gc
c-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-b
uild/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e
76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src/src/ivos -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J13182
67/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f7
11237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src/sr
c/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P216775/J1318267/spack-build/spack-stage-neuron-git.dbfe86634a
09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yv
zudhr/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-
neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo
3uuwernrrc3qhpzaij5yvzudhr/spack-src/src/nrnpython/../nrnoc -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/
spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f7112
37ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src/src/n
rnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P216775/J1318267/spack-build/spack-stage-neuron-git.dbfe8663
4a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5
yvzudhr/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-build/spack-s
tage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-p
nciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src/src/nrnpython/../nrnmpi
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J13
18267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0470
7f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src
/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/i
nclude/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P216775/software/install_gcc-12.3.0-skylake/caliper-
2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-
git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwern
rrc3qhpzaij5yvzudhr/spack-src/external/eigen -tp haswell -g -O1 -f
no-omit-frame-pointer --c++17 -fPIC --diag_suppress=1,47,111,128,
170,174,177,186,541,550,816,2465 -noswitcherror -MD -MT src/nrniv/
CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire1.cpp.o -MF CMakeFiles/nr
niv_lib.dir/__/nrnoc/intfire1.cpp.o.d -o CMakeFiles/nrniv_lib.dir/
__/nrnoc/intfire1.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-git.
dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3
qhpzaij5yvzudhr/spack-build-pnciyo3/src/nrnoc/intfire1.cpp
3496 [ 36%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/n
rnoc/intfire2.cpp.o
3497 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-bu
ild-pnciyo3/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318260/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
/J1318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea
04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack
-build-pnciyo3/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-git.db
fe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qh
pzaij5yvzudhr/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neu
ron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uu
wernrrc3qhpzaij5yvzudhr/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-build/s
pack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_dev
elop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src/src/nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/sp
ack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237
ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src/src/nrn
oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/
J1318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0
4707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-
src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P216775/J1318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf
2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudh
r/spack-build-pnciyo3 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-git.dbf
e86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhp
zaij5yvzudhr/spack-build-pnciyo3/src/nrncvode -I/gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-build/sp
ack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_deve
lop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-build-pnciyo3/src/nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
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yvzudhr/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-build/spack-s
tage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-p
nciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src/src/nrnpython/../nrnmpi
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J13
18267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0470
7f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-src
/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/i
nclude/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P216775/software/install_gcc-12.3.0-skylake/caliper-
2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-
git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwern
rrc3qhpzaij5yvzudhr/spack-src/external/eigen -tp haswell -g -O1 -f
no-omit-frame-pointer --c++17 -fPIC --diag_suppress=1,47,111,128,
170,174,177,186,541,550,816,2465 -noswitcherror -MD -MT src/nrniv/
CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.o -MF CMakeFiles/nr
niv_lib.dir/__/nrnoc/intfire4.cpp.o.d -o CMakeFiles/nrniv_lib.dir/
__/nrnoc/intfire4.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-git.
dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3
qhpzaij5yvzudhr/spack-build-pnciyo3/src/nrnoc/intfire4.cpp
>> 3500 "../nrnoc/apcount.cpp", line 286: error: identifier "_gth" is unde
fined
3501 if (gind) { _globals = _thread[_gth].get<double*>(); }
3502 ^
3503
>> 3504 "../nrnoc/apcount.cpp", line 286: error: type name is not allowed
3505 if (gind) { _globals = _thread[_gth].get<double*>(); }
3506 ^
3507
>> 3508 "../nrnoc/apcount.cpp", line 286: error: expected an expression
3509 if (gind) { _globals = _thread[_gth].get<double*>(); }
3510 ^
3511
>> 3512 "../nrnoc/apcount.cpp", line 317: error: identifier "_gth" is unde
fined
3513 if (gind) { _globals = _thread[_gth].get<double*>(); }
3514 ^
3515
>> 3516 "../nrnoc/apcount.cpp", line 317: error: type name is not allowed
3517 if (gind) { _globals = _thread[_gth].get<double*>(); }
3518 ^
3519
>> 3520 "../nrnoc/apcount.cpp", line 317: error: expected an expression
3521 if (gind) { _globals = _thread[_gth].get<double*>(); }
3522 ^
3523
>> 3524 "../nrnoc/apcount.cpp", line 350: error: identifier "_gth" is unde
fined
3525 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3526 ^
3527
>> 3528 "../nrnoc/apcount.cpp", line 350: error: type name is not allowed
3529 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3530 ^
3531
>> 3532 "../nrnoc/apcount.cpp", line 350: error: expected an expression
3533 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3534 ^
3535
>> 3536 "../nrnoc/apcount.cpp", line 377: error: identifier "_gth" is unde
fined
3537 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3538 ^
3539
>> 3540 "../nrnoc/apcount.cpp", line 377: error: type name is not allowed
3541 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3542 ^
3543
>> 3544 "../nrnoc/apcount.cpp", line 377: error: expected an expression
3545 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3546 ^
3547
>> 3548 "../nrnoc/apcount.cpp", line 397: error: identifier "_gth" is unde
fined
3549 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3550 ^
3551
>> 3552 "../nrnoc/apcount.cpp", line 397: error: type name is not allowed
3553 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3554 ^
3555
>> 3556 "../nrnoc/apcount.cpp", line 397: error: expected an expression
3557 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3558 ^
3559
>> 3560 "../nrnoc/apcount.cpp", line 415: error: identifier "_gth" is unde
fined
3561 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3562 ^
3563
>> 3564 "../nrnoc/apcount.cpp", line 415: error: type name is not allowed
3565 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3566 ^
3567
>> 3568 "../nrnoc/apcount.cpp", line 415: error: expected an expression
3569 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3570 ^
3571
3572 18 errors detected in the compilation of "../nrnoc/apcount.cpp".
>> 3573 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2500:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/apcount.cpp.o] Error 2
3574 make[2]: *** Waiting for unfinished jobs....
>> 3575 "../nrnoc/exp2syn.cpp", line 360: error: identifier "_gth" is unde
fined
3576 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3577 ^
3578
>> 3579 "../nrnoc/exp2syn.cpp", line 360: error: type name is not allowed
3580 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3581 ^
3582
>> 3583 "../nrnoc/exp2syn.cpp", line 360: error: expected an expression
3584 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3585 ^
3586
>> 3587 "../nrnoc/exp2syn.cpp", line 393: error: identifier "_gth" is unde
fined
3588 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3589 ^
3590
>> 3591 "../nrnoc/exp2syn.cpp", line 393: error: type name is not allowed
3592 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3593 ^
3594
>> 3595 "../nrnoc/exp2syn.cpp", line 393: error: expected an expression
3596 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3597 ^
3598
>> 3599 "../nrnoc/exp2syn.cpp", line 433: error: identifier "_gth" is unde
fined
3600 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3601 ^
3602
>> 3603 "../nrnoc/exp2syn.cpp", line 433: error: type name is not allowed
3604 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3605 ^
3606
>> 3607 "../nrnoc/exp2syn.cpp", line 433: error: expected an expression
3608 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3609 ^
3610
>> 3611 "../nrnoc/exp2syn.cpp", line 466: error: identifier "_gth" is unde
fined
3612 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3613 ^
3614
>> 3615 "../nrnoc/exp2syn.cpp", line 466: error: type name is not allowed
3616 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3617 ^
3618
>> 3619 "../nrnoc/exp2syn.cpp", line 466: error: expected an expression
3620 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3621 ^
3622
>> 3623 "../nrnoc/exp2syn.cpp", line 493: error: identifier "_gth" is unde
fined
3624 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3625 ^
3626
>> 3627 "../nrnoc/exp2syn.cpp", line 493: error: type name is not allowed
3628 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3629 ^
3630
>> 3631 "../nrnoc/exp2syn.cpp", line 493: error: expected an expression
3632 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3633 ^
3634
>> 3635 "../nrnoc/exp2syn.cpp", line 511: error: identifier "_gth" is unde
fined
3636 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3637 ^
3638
>> 3639 "../nrnoc/exp2syn.cpp", line 511: error: type name is not allowed
3640 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3641 ^
3642
>> 3643 "../nrnoc/exp2syn.cpp", line 511: error: expected an expression
3644 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3645 ^
3646
3647 18 errors detected in the compilation of "../nrnoc/exp2syn.cpp".
>> 3648 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2514:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/exp2syn.cpp.o] Error 2
>> 3649 "../nrnoc/expsyn.cpp", line 323: error: identifier "_gth" is undef
ined
3650 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3651 ^
3652
>> 3653 "../nrnoc/expsyn.cpp", line 323: error: type name is not allowed
3654 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3655 ^
3656
>> 3657 "../nrnoc/expsyn.cpp", line 323: error: expected an expression
3658 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3659 ^
3660
>> 3661 "../nrnoc/expsyn.cpp", line 356: error: identifier "_gth" is undef
ined
3662 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3663 ^
3664
>> 3665 "../nrnoc/expsyn.cpp", line 356: error: type name is not allowed
3666 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3667 ^
3668
>> 3669 "../nrnoc/expsyn.cpp", line 356: error: expected an expression
3670 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3671 ^
3672
>> 3673 "../nrnoc/expsyn.cpp", line 384: error: identifier "_gth" is undef
ined
3674 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3675 ^
3676
>> 3677 "../nrnoc/expsyn.cpp", line 384: error: type name is not allowed
3678 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3679 ^
3680
>> 3681 "../nrnoc/expsyn.cpp", line 384: error: expected an expression
3682 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3683 ^
3684
>> 3685 "../nrnoc/expsyn.cpp", line 416: error: identifier "_gth" is undef
ined
3686 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3687 ^
3688
>> 3689 "../nrnoc/expsyn.cpp", line 416: error: type name is not allowed
3690 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3691 ^
3692
>> 3693 "../nrnoc/expsyn.cpp", line 416: error: expected an expression
3694 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3695 ^
3696
>> 3697 "../nrnoc/expsyn.cpp", line 443: error: identifier "_gth" is undef
ined
3698 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3699 ^
3700
>> 3701 "../nrnoc/expsyn.cpp", line 443: error: type name is not allowed
3702 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3703 ^
3704
>> 3705 "../nrnoc/expsyn.cpp", line 443: error: expected an expression
3706 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3707 ^
3708
>> 3709 "../nrnoc/expsyn.cpp", line 461: error: identifier "_gth" is undef
ined
3710 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3711 ^
3712
>> 3713 "../nrnoc/expsyn.cpp", line 461: error: type name is not allowed
3714 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3715 ^
3716
>> 3717 "../nrnoc/expsyn.cpp", line 461: error: expected an expression
3718 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3719 ^
3720
3721 18 errors detected in the compilation of "../nrnoc/expsyn.cpp".
>> 3722 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2528:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/expsyn.cpp.o] Error 2
>> 3723 "../nrnoc/hh.cpp", line 438: error: identifier "_gth" is undefined
3724 if (gind) { _globals = _thread[_gth].get<double*>(); }
3725 ^
3726
>> 3727 "../nrnoc/hh.cpp", line 438: error: type name is not allowed
3728 if (gind) { _globals = _thread[_gth].get<double*>(); }
3729 ^
3730
>> 3731 "../nrnoc/hh.cpp", line 438: error: expected an expression
3732 if (gind) { _globals = _thread[_gth].get<double*>(); }
3733 ^
3734
>> 3735 "../nrnoc/hh.cpp", line 454: error: identifier "_gth" is undefined
3736 if (gind) { _globals = _thread[_gth].get<double*>(); }
3737 ^
3738
>> 3739 "../nrnoc/hh.cpp", line 454: error: type name is not allowed
3740 if (gind) { _globals = _thread[_gth].get<double*>(); }
3741 ^
3742
>> 3743 "../nrnoc/hh.cpp", line 454: error: expected an expression
3744 if (gind) { _globals = _thread[_gth].get<double*>(); }
3745 ^
3746
>> 3747 "../nrnoc/hh.cpp", line 484: error: identifier "_gth" is undefined
3748 if (gind) { _globals = _thread[_gth].get<double*>(); }
3749 ^
3750
>> 3751 "../nrnoc/hh.cpp", line 484: error: type name is not allowed
3752 if (gind) { _globals = _thread[_gth].get<double*>(); }
3753 ^
3754
>> 3755 "../nrnoc/hh.cpp", line 484: error: expected an expression
3756 if (gind) { _globals = _thread[_gth].get<double*>(); }
3757 ^
3758
>> 3759 "../nrnoc/hh.cpp", line 499: error: identifier "_gth" is undefined
3760 if (gind) { _globals = _thread[_gth].get<double*>(); }
3761 ^
3762
>> 3763 "../nrnoc/hh.cpp", line 499: error: type name is not allowed
3764 if (gind) { _globals = _thread[_gth].get<double*>(); }
3765 ^
3766
>> 3767 "../nrnoc/hh.cpp", line 499: error: expected an expression
3768 if (gind) { _globals = _thread[_gth].get<double*>(); }
3769 ^
3770
>> 3771 "../nrnoc/hh.cpp", line 517: error: identifier "_gth" is undefined
3772 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3773 ^
3774
>> 3775 "../nrnoc/hh.cpp", line 517: error: type name is not allowed
3776 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3777 ^
3778
>> 3779 "../nrnoc/hh.cpp", line 517: error: expected an expression
3780 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3781 ^
3782
>> 3783 "../nrnoc/hh.cpp", line 552: error: identifier "_gth" is undefined
3784 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3785 ^
3786
>> 3787 "../nrnoc/hh.cpp", line 552: error: type name is not allowed
3788 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3789 ^
3790
>> 3791 "../nrnoc/hh.cpp", line 552: error: expected an expression
3792 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3793 ^
3794
>> 3795 "../nrnoc/hh.cpp", line 587: error: identifier "_gth" is undefined
3796 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3797 ^
3798
>> 3799 "../nrnoc/hh.cpp", line 587: error: type name is not allowed
3800 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3801 ^
3802
>> 3803 "../nrnoc/hh.cpp", line 587: error: expected an expression
3804 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3805 ^
3806
>> 3807 "../nrnoc/hh.cpp", line 626: error: identifier "_gth" is undefined
3808 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3809 ^
3810
>> 3811 "../nrnoc/hh.cpp", line 626: error: type name is not allowed
3812 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3813 ^
3814
>> 3815 "../nrnoc/hh.cpp", line 626: error: expected an expression
3816 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3817 ^
3818
>> 3819 "../nrnoc/hh.cpp", line 661: error: identifier "_gth" is undefined
3820 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3821 ^
3822
>> 3823 "../nrnoc/hh.cpp", line 661: error: type name is not allowed
3824 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3825 ^
3826
>> 3827 "../nrnoc/hh.cpp", line 661: error: expected an expression
3828 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3829 ^
3830
>> 3831 "../nrnoc/hh.cpp", line 679: error: identifier "_gth" is undefined
3832 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3833 ^
3834
>> 3835 "../nrnoc/hh.cpp", line 679: error: type name is not allowed
3836 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3837 ^
3838
>> 3839 "../nrnoc/hh.cpp", line 679: error: expected an expression
3840 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3841 ^
3842
3843 30 errors detected in the compilation of "../nrnoc/hh.cpp".
>> 3844 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2556:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/hh.cpp.o] Error 2
>> 3845 "../nrnoc/intfire1.cpp", line 282: error: identifier "_gth" is und
efined
3846 if (gind) { _globals = _thread[_gth].get<double*>(); }
3847 ^
3848
>> 3849 "../nrnoc/intfire1.cpp", line 282: error: type name is not allowed
3850 if (gind) { _globals = _thread[_gth].get<double*>(); }
3851 ^
3852
>> 3853 "../nrnoc/intfire1.cpp", line 282: error: expected an expression
3854 if (gind) { _globals = _thread[_gth].get<double*>(); }
3855 ^
3856
>> 3857 "../nrnoc/intfire1.cpp", line 336: error: identifier "_gth" is und
efined
3858 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3859 ^
3860
>> 3861 "../nrnoc/intfire1.cpp", line 336: error: type name is not allowed
3862 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3863 ^
3864
>> 3865 "../nrnoc/intfire1.cpp", line 336: error: expected an expression
3866 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3867 ^
3868
>> 3869 "../nrnoc/intfire1.cpp", line 360: error: identifier "_gth" is und
efined
3870 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3871 ^
3872
>> 3873 "../nrnoc/intfire1.cpp", line 360: error: type name is not allowed
3874 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3875 ^
3876
>> 3877 "../nrnoc/intfire1.cpp", line 360: error: expected an expression
3878 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3879 ^
3880
3881 9 errors detected in the compilation of "../nrnoc/intfire1.cpp".
>> 3882 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2570:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire1.cpp.o] Error
2
>> 3883 "../nrnoc/intfire2.cpp", line 294: error: identifier "_gth" is und
efined
3884 if (gind) { _globals = _thread[_gth].get<double*>(); }
3885 ^
3886
>> 3887 "../nrnoc/intfire2.cpp", line 294: error: type name is not allowed
3888 if (gind) { _globals = _thread[_gth].get<double*>(); }
3889 ^
3890
>> 3891 "../nrnoc/intfire2.cpp", line 294: error: expected an expression
3892 if (gind) { _globals = _thread[_gth].get<double*>(); }
3893 ^
3894
>> 3895 "../nrnoc/intfire2.cpp", line 324: error: identifier "_gth" is und
efined
3896 if (gind) { _globals = _thread[_gth].get<double*>(); }
3897 ^
3898
>> 3899 "../nrnoc/intfire2.cpp", line 324: error: type name is not allowed
3900 if (gind) { _globals = _thread[_gth].get<double*>(); }
3901 ^
3902
>> 3903 "../nrnoc/intfire2.cpp", line 324: error: expected an expression
3904 if (gind) { _globals = _thread[_gth].get<double*>(); }
3905 ^
3906
>> 3907 "../nrnoc/intfire2.cpp", line 347: error: identifier "_globals" is
undefined
3908 artcell_net_send ( _tqitem, _args, _pnt, t + firetime ( _t
hreadargscomma_ ib , _libf , 0.0 ) , 1.0 ) ;
3909 ^
3910
>> 3911 "../nrnoc/intfire2.cpp", line 357: error: identifier "_globals" is
undefined
3912 artcell_net_move ( _tqitem, _pnt, firetime ( _threadargsc
omma_ ib , _libf , m ) + t ) ;
3913 ^
3914
>> 3915 "../nrnoc/intfire2.cpp", line 418: error: identifier "_gth" is und
efined
3916 if (gind) { _globals = _thread[_gth].get<double*>(); }
3917 ^
3918
>> 3919 "../nrnoc/intfire2.cpp", line 418: error: type name is not allowed
3920 if (gind) { _globals = _thread[_gth].get<double*>(); }
3921 ^
3922
>> 3923 "../nrnoc/intfire2.cpp", line 418: error: expected an expression
3924 if (gind) { _globals = _thread[_gth].get<double*>(); }
3925 ^
3926
>> 3927 "../nrnoc/intfire2.cpp", line 472: error: identifier "_gth" is und
efined
3928 if (gind) { _globals = _thread[_gth].get<double*>(); }
3929 ^
3930
>> 3931 "../nrnoc/intfire2.cpp", line 472: error: type name is not allowed
3932 if (gind) { _globals = _thread[_gth].get<double*>(); }
3933 ^
3934
>> 3935 "../nrnoc/intfire2.cpp", line 472: error: expected an expression
3936 if (gind) { _globals = _thread[_gth].get<double*>(); }
3937 ^
3938
>> 3939 "../nrnoc/intfire2.cpp", line 503: error: identifier "_gth" is und
efined
3940 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3941 ^
3942
>> 3943 "../nrnoc/intfire2.cpp", line 503: error: type name is not allowed
3944 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3945 ^
3946
>> 3947 "../nrnoc/intfire2.cpp", line 503: error: expected an expression
3948 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3949 ^
3950
>> 3951 "../nrnoc/intfire2.cpp", line 527: error: identifier "_gth" is und
efined
3952 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3953 ^
3954
>> 3955 "../nrnoc/intfire2.cpp", line 527: error: type name is not allowed
3956 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3957 ^
3958
>> 3959 "../nrnoc/intfire2.cpp", line 527: error: expected an expression
3960 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3961 ^
3962
3963 20 errors detected in the compilation of "../nrnoc/intfire2.cpp".
>> 3964 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2584:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o] Error
2
>> 3965 "../nrnoc/intfire4.cpp", line 425: error: identifier "_gth" is und
efined
3966 if (gind) { _globals = _thread[_gth].get<double*>(); }
3967 ^
3968
>> 3969 "../nrnoc/intfire4.cpp", line 425: error: type name is not allowed
3970 if (gind) { _globals = _thread[_gth].get<double*>(); }
3971 ^
3972
>> 3973 "../nrnoc/intfire4.cpp", line 425: error: expected an expression
3974 if (gind) { _globals = _thread[_gth].get<double*>(); }
3975 ^
3976
>> 3977 "../nrnoc/intfire4.cpp", line 454: error: identifier "_gth" is und
efined
3978 if (gind) { _globals = _thread[_gth].get<double*>(); }
3979 ^
3980
>> 3981 "../nrnoc/intfire4.cpp", line 454: error: type name is not allowed
3982 if (gind) { _globals = _thread[_gth].get<double*>(); }
3983 ^
3984
>> 3985 "../nrnoc/intfire4.cpp", line 454: error: expected an expression
3986 if (gind) { _globals = _thread[_gth].get<double*>(); }
3987 ^
3988
>> 3989 "../nrnoc/intfire4.cpp", line 482: error: identifier "_gth" is und
efined
3990 if (gind) { _globals = _thread[_gth].get<double*>(); }
3991 ^
3992
>> 3993 "../nrnoc/intfire4.cpp", line 482: error: type name is not allowed
3994 if (gind) { _globals = _thread[_gth].get<double*>(); }
3995 ^
3996
>> 3997 "../nrnoc/intfire4.cpp", line 482: error: expected an expression
3998 if (gind) { _globals = _thread[_gth].get<double*>(); }
3999 ^
4000
>> 4001 "../nrnoc/intfire4.cpp", line 510: error: identifier "_gth" is und
efined
4002 if (gind) { _globals = _thread[_gth].get<double*>(); }
4003 ^
4004
>> 4005 "../nrnoc/intfire4.cpp", line 510: error: type name is not allowed
4006 if (gind) { _globals = _thread[_gth].get<double*>(); }
4007 ^
4008
>> 4009 "../nrnoc/intfire4.cpp", line 510: error: expected an expression
4010 if (gind) { _globals = _thread[_gth].get<double*>(); }
4011 ^
4012
>> 4013 "../nrnoc/intfire4.cpp", line 538: error: identifier "_gth" is und
efined
4014 if (gind) { _globals = _thread[_gth].get<double*>(); }
4015 ^
4016
>> 4017 "../nrnoc/intfire4.cpp", line 538: error: type name is not allowed
4018 if (gind) { _globals = _thread[_gth].get<double*>(); }
4019 ^
4020
>> 4021 "../nrnoc/intfire4.cpp", line 538: error: expected an expression
4022 if (gind) { _globals = _thread[_gth].get<double*>(); }
4023 ^
4024
>> 4025 "../nrnoc/intfire4.cpp", line 618: error: identifier "_gth" is und
efined
4026 if (gind) { _globals = _thread[_gth].get<double*>(); }
4027 ^
4028
>> 4029 "../nrnoc/intfire4.cpp", line 618: error: type name is not allowed
4030 if (gind) { _globals = _thread[_gth].get<double*>(); }
4031 ^
4032
>> 4033 "../nrnoc/intfire4.cpp", line 618: error: expected an expression
4034 if (gind) { _globals = _thread[_gth].get<double*>(); }
4035 ^
4036
>> 4037 "../nrnoc/intfire4.cpp", line 669: error: identifier "_gth" is und
efined
4038 if (gind) { _globals = _thread[_gth].get<double*>(); }
4039 ^
4040
>> 4041 "../nrnoc/intfire4.cpp", line 669: error: type name is not allowed
4042 if (gind) { _globals = _thread[_gth].get<double*>(); }
4043 ^
4044
>> 4045 "../nrnoc/intfire4.cpp", line 669: error: expected an expression
4046 if (gind) { _globals = _thread[_gth].get<double*>(); }
4047 ^
4048
>> 4049 "../nrnoc/intfire4.cpp", line 697: error: identifier "_gth" is und
efined
4050 if (gind) { _globals = _thread[_gth].get<double*>(); }
4051 ^
4052
>> 4053 "../nrnoc/intfire4.cpp", line 697: error: type name is not allowed
4054 if (gind) { _globals = _thread[_gth].get<double*>(); }
4055 ^
4056
>> 4057 "../nrnoc/intfire4.cpp", line 697: error: expected an expression
4058 if (gind) { _globals = _thread[_gth].get<double*>(); }
4059 ^
4060
>> 4061 "../nrnoc/intfire4.cpp", line 759: error: identifier "_gth" is und
efined
4062 if (gind) { _globals = _thread[_gth].get<double*>(); }
4063 ^
4064
>> 4065 "../nrnoc/intfire4.cpp", line 759: error: type name is not allowed
4066 if (gind) { _globals = _thread[_gth].get<double*>(); }
4067 ^
4068
>> 4069 "../nrnoc/intfire4.cpp", line 759: error: expected an expression
4070 if (gind) { _globals = _thread[_gth].get<double*>(); }
4071 ^
4072
>> 4073 "../nrnoc/intfire4.cpp", line 774: error: identifier "_globals" is
undefined
4074 newstates ( _threadargscomma_ t - t0 ) ;
4075 ^
4076
>> 4077 "../nrnoc/intfire4.cpp", line 825: error: identifier "_gth" is und
efined
4078 if (gind) { _globals = _thread[_gth].get<double*>(); }
4079 ^
4080
>> 4081 "../nrnoc/intfire4.cpp", line 825: error: type name is not allowed
4082 if (gind) { _globals = _thread[_gth].get<double*>(); }
4083 ^
4084
>> 4085 "../nrnoc/intfire4.cpp", line 825: error: expected an expression
4086 if (gind) { _globals = _thread[_gth].get<double*>(); }
4087 ^
4088
>> 4089 "../nrnoc/intfire4.cpp", line 860: error: identifier "_gth" is und
efined
4090 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4091 ^
4092
>> 4093 "../nrnoc/intfire4.cpp", line 860: error: type name is not allowed
4094 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4095 ^
4096
>> 4097 "../nrnoc/intfire4.cpp", line 860: error: expected an expression
4098 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4099 ^
4100
>> 4101 "../nrnoc/intfire4.cpp", line 884: error: identifier "_gth" is und
efined
4102 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4103 ^
4104
>> 4105 "../nrnoc/intfire4.cpp", line 884: error: type name is not allowed
4106 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4107 ^
4108
>> 4109 "../nrnoc/intfire4.cpp", line 884: error: expected an expression
4110 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4111 ^
4112
4113 37 errors detected in the compilation of "../nrnoc/intfire4.cpp".
>> 4114 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2598:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.o] Error
2
4115 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc
3qhpzaij5yvzudhr/spack-build-pnciyo3'
>> 4116 make[1]: *** [CMakeFiles/Makefile2:2920: src/nrniv/CMakeFiles/nrni
v_lib.dir/all] Error 2
4117 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc
3qhpzaij5yvzudhr/spack-build-pnciyo3'
>> 4118 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318267/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-pnciyo3uuwernrrc3qhpzaij5yvzudhr/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i7n21: task 0: Exited with exit code 1
section_end:1718271223:step_script section_start:1718271223:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=61083 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1318267 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=61163 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1318267 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=61246 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1318267 responseStatus=201 Created token=glcbt-64
section_end:1718271227:upload_artifacts_on_failure section_start:1718271227:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718271228:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-neuron-nmodl-nvhpc-omp.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718269859:resolve_secrets Resolving secrets
section_end:1718269859:resolve_secrets section_start:1718269859:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3071332216, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 216775, build ref , job ID 1318268
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1318268_PROD_P2160_CP5_C6
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2249758
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1318268_PROD_P2160_CP5_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --ntasks=2 --jobid=2249758 --cpus-per-task=8 --mem=160G
section_end:1718269861:prepare_executor section_start:1718269861:prepare_script Preparing environment
Using git from spack modules
Running on r1i7n21 via bbpv1.epfl.ch...
section_end:1718269866:prepare_script section_start:1718269866:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718269868:get_sources section_start:1718269868:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=41289 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1718269874:restore_cache section_start:1718269874:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1318262)...
Runtime platform  arch=amd64 os=linux pid=41438 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1318262 responseStatus=200 OK token=glcbt-64
section_end:1718269876:download_artifacts section_start:1718269876:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775/J1318268_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/d3mdhq7gjxncmj42lvxjtytypcjqpwmf
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2249758/ccache
Config file: /nvme/bbpcihpcproj12/2249758/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Thu Jun 13 11:11:23 2024
Local storage:
Cache size (GB): 0.45 / 0.51 (88.84%)
Files: 9937
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
- ^/d3mdhq7gjxncmj42lvxjtytypcjqpwmf
- ^caliper+cuda cuda_arch=70
Concretized
--------------------------------
- vktfsck neuron@git.dbfe86634a09cf2329eea04707f711237ed86e76=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
- vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake
[^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
- az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+] d3mdhq7 ^nmodl@git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb_develop-d3mdhq
==> Installing caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 [54/55]
==> No binary for caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 found: installing from source
==> Fetching https://github.com/LLNL/Caliper/archive/v2.11.0.tar.gz
==> No patches needed for caliper
==> caliper: Executing phase: 'cmake'
==> caliper: Executing phase: 'build'
==> caliper: Executing phase: 'install'
==> caliper: Successfully installed caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2
Stage: 3.22s. Cmake: 9.65s. Build: 7.55s. Install: 1.08s. Post-install: 0.17s. Total: 21.97s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
==> Installing neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76=develop-vktfsckdxpwirphwinshywdpjbfxb7ix [55/55]
==> No binary for neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76=develop-vktfsckdxpwirphwinshywdpjbfxb7ix found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> Error: ProcessError: Command exited with status 2:
'make' '-j8'
161 errors found in build log:
2878 [ 29%] Running nrnivmodl-core with internal mod files
2879 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-bu
ild-vktfsck/bin && /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage
_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes/bin/cmak
e -E env NMODLHOME= /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpc
proj12/P216775/J1318268/spack-build/spack-stage-neuron-git.dbfe866
34a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdp
jbfxb7ix/spack-build-vktfsck/bin/nrnivmodl-core -b STATIC -m /gpfs
/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/i
nstall_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0df7
082f7ea5cb_develop-d3mdhq/bin/nmodl -n internal -p 4 .
2880 WARNING: No mod files found in '/gpfs/bbp.cscs.ch/ssd/gitlab_map_j
obs/bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron
-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwi
rphwinshywdpjbfxb7ix/spack-build-vktfsck/bin', compiling default o
nes only!
2881 [INFO] Running: make -j4 -f /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphw
inshywdpjbfxb7ix/spack-build-vktfsck/share/coreneuron/nrnivmodl_co
re_makefile ROOT=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P216775/J1318268/spack-build/spack-stage-neuron-git.dbfe86634a
09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbf
xb7ix/spack-build-vktfsck MECHLIB_SUFFIX=internal NMODL_BINARY=/gp
fs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software
/install_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0d
f7082f7ea5cb_develop-d3mdhq/bin/nmodl MODS_PATH=x86_64/corenrn/mod
2c BUILD_TYPE=STATIC NRN_PRCELLSTATE=0
2882 make[3]: Entering directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs
/bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-gi
t.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirph
winshywdpjbfxb7ix/spack-build-vktfsck/bin'
2883 make[3]: warning: -j4 forced in submake: resetting jobserver mode.
>> 2884 make[3]: xcrun: No such file or directory
2885 Default NMODL flags:
>> 2886 diff: x86_64/corenrn/mod2c/_mod_func.cpp: No such file or director
y
2887 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2888 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2889 [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shado
ws <extern_neuron_var> definition in NMODL_GLOBAL
2890 [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced wit
h cnexp solver
2891 "../../../spack-src/external/eigen/Eigen/src/Core/arch/AVX/PacketM
ath.h", line 984: warning: integer conversion resulted in a change
of sign [integer_sign_change]
2892 const __m128i sign_mask = _mm_set1_epi16(static_cast<numext::u
int16_t>(0x8000));
...
3494 [ 36%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/n
rnoc/intfire1.cpp.o
3495 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-bu
ild-vktfsck/src/nrniv && /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318260/spack/lib/spack/env/nvhpc/nvc++ -DCOR
ENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIN
D=1 -DNRN_AVOID_ABSOLUTE_PATHS -DNRN_CALIPER -DNRN_ENABLE_THREADS
-DNRN_PROFILING -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPO
RTS -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
/J1318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea
04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack
-build-vktfsck/include -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbp
cihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git.db
fe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwins
hywdpjbfxb7ix/spack-src/src/ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_ma
p_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neu
ron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdx
pwirphwinshywdpjbfxb7ix/spack-src/src/nrncvode -I/gpfs/bbp.cscs.ch
/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/s
pack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_dev
elop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src/nrniv -I/gpfs/
bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/sp
ack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237
ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src/nrn
oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/
J1318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0
4707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-
src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
P216775/J1318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf
2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7i
x/spack-build-vktfsck -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git.dbf
e86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwinsh
ywdpjbfxb7ix/spack-build-vktfsck/src/nrncvode -I/gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/sp
ack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_deve
lop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-build-vktfsck/src/nrnoc
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
07f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-bu
ild-vktfsck/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphw
inshywdpjbfxb7ix/spack-build-vktfsck/src/oc -I/gpfs/bbp.cscs.ch/ss
d/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/spac
k-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develo
p-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-build-vktfsck/src/paralle
l -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J
1318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04
707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-b
uild-vktfsck/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphw
inshywdpjbfxb7ix/spack-build-vktfsck/src/sundials/shared -I/gpfs/b
bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spa
ck-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237e
d86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src -I/g
pfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J131826
8/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f71
1237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src
/gnu -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P21677
5/J1318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329ee
a04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spac
k-src/src/nrnmpi -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P216775/J1318268/spack-build/spack-stage-neuron-git.dbfe8663
4a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpj
bfxb7ix/spack-src/src/nrnpython -I/gpfs/bbp.cscs.ch/ssd/gitlab_map
_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neur
on-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxp
wirphwinshywdpjbfxb7ix/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/sp
ack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_deve
lop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src/scopmath -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/
spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f7112
37ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src/s
parse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2167
75/J1318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329e
ea04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spa
ck-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git.dbfe8
6634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwinshyw
dpjbfxb7ix/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-ne
uron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckd
xpwirphwinshywdpjbfxb7ix/spack-src/src/sundials/cvodes -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack
-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed8
6e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src/sundia
ls/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216
775/J1318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329
eea04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/sp
ack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-g
it.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirp
hwinshywdpjbfxb7ix/spack-build-vktfsck/src/nrniv/oc_generated -I/g
pfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gc
c-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-b
uild/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e
76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src/ivos -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J13182
68/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f7
11237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/sr
c/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P216775/J1318268/spack-build/spack-stage-neuron-git.dbfe86634a
09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbf
xb7ix/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-
neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsc
kdxpwirphwinshywdpjbfxb7ix/spack-src/src/nrnpython/../nrnoc -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/
spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f7112
37ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src/n
rnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P216775/J1318268/spack-build/spack-stage-neuron-git.dbfe8663
4a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpj
bfxb7ix/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/spack-s
tage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-v
ktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src/nrnpython/../nrnmpi
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J13
18268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0470
7f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src
/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/i
nclude/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P216775/software/install_gcc-12.3.0-skylake/caliper-
2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-
git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwir
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bpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git.
dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwi
nshywdpjbfxb7ix/spack-build-vktfsck/src/nrnoc/intfire1.cpp
3496 [ 36%] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/n
rnoc/intfire2.cpp.o
3497 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea047
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RTS -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
/J1318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea
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/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/s
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oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/
J1318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0
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src/src/oc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/
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x/spack-build-vktfsck -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpc
ihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git.dbf
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ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/sp
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-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
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07f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-bu
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bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git
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bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git
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bp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spa
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5/J1318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329ee
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/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/i
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3499 cd /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1
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_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neur
on-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxp
wirphwinshywdpjbfxb7ix/spack-src/src/parallel -I/gpfs/bbp.cscs.ch/
ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/sp
ack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_deve
lop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src/scopmath -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/
spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f7112
37ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src/s
parse -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P2167
75/J1318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329e
ea04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spa
ck-src/src/sparse13 -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcih
pcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git.dbfe8
6634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwinshyw
dpjbfxb7ix/spack-src/src/sundials -I/gpfs/bbp.cscs.ch/ssd/gitlab_m
ap_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-ne
uron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckd
xpwirphwinshywdpjbfxb7ix/spack-src/src/sundials/cvodes -I/gpfs/bbp
.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack
-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed8
6e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src/sundia
ls/ida -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216
775/J1318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329
eea04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/sp
ack-src/src/sundials/shared -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_job
s/bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-g
it.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirp
hwinshywdpjbfxb7ix/spack-build-vktfsck/src/nrniv/oc_generated -I/g
pfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gc
c-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256/include -I/gpfs/bbp.c
scs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-b
uild/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e
76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src/ivos -I/
gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J13182
68/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f7
11237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/sr
c/nrnpython/.. -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcpro
j12/P216775/J1318268/spack-build/spack-stage-neuron-git.dbfe86634a
09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbf
xb7ix/spack-src/src/nrnpython/../oc -I/gpfs/bbp.cscs.ch/ssd/gitlab
_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-
neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsc
kdxpwirphwinshywdpjbfxb7ix/spack-src/src/nrnpython/../nrnoc -I/gpf
s/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/
spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f7112
37ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src/n
rnpython/../ivoc -I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcp
roj12/P216775/J1318268/spack-build/spack-stage-neuron-git.dbfe8663
4a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpj
bfxb7ix/spack-src/src/nrnpython/../nrniv -I/gpfs/bbp.cscs.ch/ssd/g
itlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/spack-s
tage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-v
ktfsckdxpwirphwinshywdpjbfxb7ix/spack-src/src/nrnpython/../nrnmpi
-I/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J13
18268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea0470
7f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-src
/src/nrnpython/../ivos -I/gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01
/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m/i
nclude/python3.11 -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P216775/software/install_gcc-12.3.0-skylake/caliper-
2.11.0-vjj3tp/include -isystem /gpfs/bbp.cscs.ch/ssd/gitlab_map_jo
bs/bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-
git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwir
phwinshywdpjbfxb7ix/spack-src/external/eigen -tp haswell -g -O1 -f
no-omit-frame-pointer --c++17 -fPIC --diag_suppress=1,47,111,128,
170,174,177,186,541,550,816,2465 -noswitcherror -MD -MT src/nrniv/
CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.o -MF CMakeFiles/nr
niv_lib.dir/__/nrnoc/intfire4.cpp.o.d -o CMakeFiles/nrniv_lib.dir/
__/nrnoc/intfire4.cpp.o -c /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/b
bpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git.
dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwi
nshywdpjbfxb7ix/spack-build-vktfsck/src/nrnoc/intfire4.cpp
>> 3500 "../nrnoc/apcount.cpp", line 286: error: identifier "_gth" is unde
fined
3501 if (gind) { _globals = _thread[_gth].get<double*>(); }
3502 ^
3503
>> 3504 "../nrnoc/apcount.cpp", line 286: error: type name is not allowed
3505 if (gind) { _globals = _thread[_gth].get<double*>(); }
3506 ^
3507
>> 3508 "../nrnoc/apcount.cpp", line 286: error: expected an expression
3509 if (gind) { _globals = _thread[_gth].get<double*>(); }
3510 ^
3511
>> 3512 "../nrnoc/apcount.cpp", line 317: error: identifier "_gth" is unde
fined
3513 if (gind) { _globals = _thread[_gth].get<double*>(); }
3514 ^
3515
>> 3516 "../nrnoc/apcount.cpp", line 317: error: type name is not allowed
3517 if (gind) { _globals = _thread[_gth].get<double*>(); }
3518 ^
3519
>> 3520 "../nrnoc/apcount.cpp", line 317: error: expected an expression
3521 if (gind) { _globals = _thread[_gth].get<double*>(); }
3522 ^
3523
>> 3524 "../nrnoc/apcount.cpp", line 350: error: identifier "_gth" is unde
fined
3525 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3526 ^
3527
>> 3528 "../nrnoc/apcount.cpp", line 350: error: type name is not allowed
3529 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3530 ^
3531
>> 3532 "../nrnoc/apcount.cpp", line 350: error: expected an expression
3533 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3534 ^
3535
>> 3536 "../nrnoc/apcount.cpp", line 377: error: identifier "_gth" is unde
fined
3537 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3538 ^
3539
>> 3540 "../nrnoc/apcount.cpp", line 377: error: type name is not allowed
3541 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3542 ^
3543
>> 3544 "../nrnoc/apcount.cpp", line 377: error: expected an expression
3545 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3546 ^
3547
>> 3548 "../nrnoc/apcount.cpp", line 397: error: identifier "_gth" is unde
fined
3549 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3550 ^
3551
>> 3552 "../nrnoc/apcount.cpp", line 397: error: type name is not allowed
3553 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3554 ^
3555
>> 3556 "../nrnoc/apcount.cpp", line 397: error: expected an expression
3557 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3558 ^
3559
>> 3560 "../nrnoc/apcount.cpp", line 415: error: identifier "_gth" is unde
fined
3561 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3562 ^
3563
>> 3564 "../nrnoc/apcount.cpp", line 415: error: type name is not allowed
3565 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3566 ^
3567
>> 3568 "../nrnoc/apcount.cpp", line 415: error: expected an expression
3569 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3570 ^
3571
3572 18 errors detected in the compilation of "../nrnoc/apcount.cpp".
>> 3573 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2500:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/apcount.cpp.o] Error 2
3574 make[2]: *** Waiting for unfinished jobs....
>> 3575 "../nrnoc/exp2syn.cpp", line 360: error: identifier "_gth" is unde
fined
3576 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3577 ^
3578
>> 3579 "../nrnoc/exp2syn.cpp", line 360: error: type name is not allowed
3580 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3581 ^
3582
>> 3583 "../nrnoc/exp2syn.cpp", line 360: error: expected an expression
3584 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3585 ^
3586
>> 3587 "../nrnoc/exp2syn.cpp", line 393: error: identifier "_gth" is unde
fined
3588 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3589 ^
3590
>> 3591 "../nrnoc/exp2syn.cpp", line 393: error: type name is not allowed
3592 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3593 ^
3594
>> 3595 "../nrnoc/exp2syn.cpp", line 393: error: expected an expression
3596 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3597 ^
3598
>> 3599 "../nrnoc/exp2syn.cpp", line 433: error: identifier "_gth" is unde
fined
3600 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3601 ^
3602
>> 3603 "../nrnoc/exp2syn.cpp", line 433: error: type name is not allowed
3604 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3605 ^
3606
>> 3607 "../nrnoc/exp2syn.cpp", line 433: error: expected an expression
3608 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3609 ^
3610
>> 3611 "../nrnoc/exp2syn.cpp", line 466: error: identifier "_gth" is unde
fined
3612 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3613 ^
3614
>> 3615 "../nrnoc/exp2syn.cpp", line 466: error: type name is not allowed
3616 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3617 ^
3618
>> 3619 "../nrnoc/exp2syn.cpp", line 466: error: expected an expression
3620 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3621 ^
3622
>> 3623 "../nrnoc/exp2syn.cpp", line 493: error: identifier "_gth" is unde
fined
3624 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3625 ^
3626
>> 3627 "../nrnoc/exp2syn.cpp", line 493: error: type name is not allowed
3628 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3629 ^
3630
>> 3631 "../nrnoc/exp2syn.cpp", line 493: error: expected an expression
3632 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3633 ^
3634
>> 3635 "../nrnoc/exp2syn.cpp", line 511: error: identifier "_gth" is unde
fined
3636 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3637 ^
3638
>> 3639 "../nrnoc/exp2syn.cpp", line 511: error: type name is not allowed
3640 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3641 ^
3642
>> 3643 "../nrnoc/exp2syn.cpp", line 511: error: expected an expression
3644 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3645 ^
3646
3647 18 errors detected in the compilation of "../nrnoc/exp2syn.cpp".
>> 3648 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2514:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/exp2syn.cpp.o] Error 2
>> 3649 "../nrnoc/expsyn.cpp", line 323: error: identifier "_gth" is undef
ined
3650 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3651 ^
3652
>> 3653 "../nrnoc/expsyn.cpp", line 323: error: type name is not allowed
3654 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3655 ^
3656
>> 3657 "../nrnoc/expsyn.cpp", line 323: error: expected an expression
3658 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3659 ^
3660
>> 3661 "../nrnoc/expsyn.cpp", line 356: error: identifier "_gth" is undef
ined
3662 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3663 ^
3664
>> 3665 "../nrnoc/expsyn.cpp", line 356: error: type name is not allowed
3666 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3667 ^
3668
>> 3669 "../nrnoc/expsyn.cpp", line 356: error: expected an expression
3670 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3671 ^
3672
>> 3673 "../nrnoc/expsyn.cpp", line 384: error: identifier "_gth" is undef
ined
3674 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3675 ^
3676
>> 3677 "../nrnoc/expsyn.cpp", line 384: error: type name is not allowed
3678 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3679 ^
3680
>> 3681 "../nrnoc/expsyn.cpp", line 384: error: expected an expression
3682 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3683 ^
3684
>> 3685 "../nrnoc/expsyn.cpp", line 416: error: identifier "_gth" is undef
ined
3686 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3687 ^
3688
>> 3689 "../nrnoc/expsyn.cpp", line 416: error: type name is not allowed
3690 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3691 ^
3692
>> 3693 "../nrnoc/expsyn.cpp", line 416: error: expected an expression
3694 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3695 ^
3696
>> 3697 "../nrnoc/expsyn.cpp", line 443: error: identifier "_gth" is undef
ined
3698 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3699 ^
3700
>> 3701 "../nrnoc/expsyn.cpp", line 443: error: type name is not allowed
3702 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3703 ^
3704
>> 3705 "../nrnoc/expsyn.cpp", line 443: error: expected an expression
3706 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3707 ^
3708
>> 3709 "../nrnoc/expsyn.cpp", line 461: error: identifier "_gth" is undef
ined
3710 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3711 ^
3712
>> 3713 "../nrnoc/expsyn.cpp", line 461: error: type name is not allowed
3714 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3715 ^
3716
>> 3717 "../nrnoc/expsyn.cpp", line 461: error: expected an expression
3718 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3719 ^
3720
3721 18 errors detected in the compilation of "../nrnoc/expsyn.cpp".
>> 3722 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2528:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/expsyn.cpp.o] Error 2
>> 3723 "../nrnoc/hh.cpp", line 438: error: identifier "_gth" is undefined
3724 if (gind) { _globals = _thread[_gth].get<double*>(); }
3725 ^
3726
>> 3727 "../nrnoc/hh.cpp", line 438: error: type name is not allowed
3728 if (gind) { _globals = _thread[_gth].get<double*>(); }
3729 ^
3730
>> 3731 "../nrnoc/hh.cpp", line 438: error: expected an expression
3732 if (gind) { _globals = _thread[_gth].get<double*>(); }
3733 ^
3734
>> 3735 "../nrnoc/hh.cpp", line 454: error: identifier "_gth" is undefined
3736 if (gind) { _globals = _thread[_gth].get<double*>(); }
3737 ^
3738
>> 3739 "../nrnoc/hh.cpp", line 454: error: type name is not allowed
3740 if (gind) { _globals = _thread[_gth].get<double*>(); }
3741 ^
3742
>> 3743 "../nrnoc/hh.cpp", line 454: error: expected an expression
3744 if (gind) { _globals = _thread[_gth].get<double*>(); }
3745 ^
3746
>> 3747 "../nrnoc/hh.cpp", line 484: error: identifier "_gth" is undefined
3748 if (gind) { _globals = _thread[_gth].get<double*>(); }
3749 ^
3750
>> 3751 "../nrnoc/hh.cpp", line 484: error: type name is not allowed
3752 if (gind) { _globals = _thread[_gth].get<double*>(); }
3753 ^
3754
>> 3755 "../nrnoc/hh.cpp", line 484: error: expected an expression
3756 if (gind) { _globals = _thread[_gth].get<double*>(); }
3757 ^
3758
>> 3759 "../nrnoc/hh.cpp", line 499: error: identifier "_gth" is undefined
3760 if (gind) { _globals = _thread[_gth].get<double*>(); }
3761 ^
3762
>> 3763 "../nrnoc/hh.cpp", line 499: error: type name is not allowed
3764 if (gind) { _globals = _thread[_gth].get<double*>(); }
3765 ^
3766
>> 3767 "../nrnoc/hh.cpp", line 499: error: expected an expression
3768 if (gind) { _globals = _thread[_gth].get<double*>(); }
3769 ^
3770
>> 3771 "../nrnoc/hh.cpp", line 517: error: identifier "_gth" is undefined
3772 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3773 ^
3774
>> 3775 "../nrnoc/hh.cpp", line 517: error: type name is not allowed
3776 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3777 ^
3778
>> 3779 "../nrnoc/hh.cpp", line 517: error: expected an expression
3780 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3781 ^
3782
>> 3783 "../nrnoc/hh.cpp", line 552: error: identifier "_gth" is undefined
3784 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3785 ^
3786
>> 3787 "../nrnoc/hh.cpp", line 552: error: type name is not allowed
3788 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3789 ^
3790
>> 3791 "../nrnoc/hh.cpp", line 552: error: expected an expression
3792 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3793 ^
3794
>> 3795 "../nrnoc/hh.cpp", line 587: error: identifier "_gth" is undefined
3796 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3797 ^
3798
>> 3799 "../nrnoc/hh.cpp", line 587: error: type name is not allowed
3800 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3801 ^
3802
>> 3803 "../nrnoc/hh.cpp", line 587: error: expected an expression
3804 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3805 ^
3806
>> 3807 "../nrnoc/hh.cpp", line 626: error: identifier "_gth" is undefined
3808 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3809 ^
3810
>> 3811 "../nrnoc/hh.cpp", line 626: error: type name is not allowed
3812 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3813 ^
3814
>> 3815 "../nrnoc/hh.cpp", line 626: error: expected an expression
3816 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3817 ^
3818
>> 3819 "../nrnoc/hh.cpp", line 661: error: identifier "_gth" is undefined
3820 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3821 ^
3822
>> 3823 "../nrnoc/hh.cpp", line 661: error: type name is not allowed
3824 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3825 ^
3826
>> 3827 "../nrnoc/hh.cpp", line 661: error: expected an expression
3828 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3829 ^
3830
>> 3831 "../nrnoc/hh.cpp", line 679: error: identifier "_gth" is undefined
3832 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3833 ^
3834
>> 3835 "../nrnoc/hh.cpp", line 679: error: type name is not allowed
3836 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3837 ^
3838
>> 3839 "../nrnoc/hh.cpp", line 679: error: expected an expression
3840 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3841 ^
3842
3843 30 errors detected in the compilation of "../nrnoc/hh.cpp".
>> 3844 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2556:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/hh.cpp.o] Error 2
>> 3845 "../nrnoc/intfire1.cpp", line 282: error: identifier "_gth" is und
efined
3846 if (gind) { _globals = _thread[_gth].get<double*>(); }
3847 ^
3848
>> 3849 "../nrnoc/intfire1.cpp", line 282: error: type name is not allowed
3850 if (gind) { _globals = _thread[_gth].get<double*>(); }
3851 ^
3852
>> 3853 "../nrnoc/intfire1.cpp", line 282: error: expected an expression
3854 if (gind) { _globals = _thread[_gth].get<double*>(); }
3855 ^
3856
>> 3857 "../nrnoc/intfire1.cpp", line 336: error: identifier "_gth" is und
efined
3858 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3859 ^
3860
>> 3861 "../nrnoc/intfire1.cpp", line 336: error: type name is not allowed
3862 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3863 ^
3864
>> 3865 "../nrnoc/intfire1.cpp", line 336: error: expected an expression
3866 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3867 ^
3868
>> 3869 "../nrnoc/intfire1.cpp", line 360: error: identifier "_gth" is und
efined
3870 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3871 ^
3872
>> 3873 "../nrnoc/intfire1.cpp", line 360: error: type name is not allowed
3874 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3875 ^
3876
>> 3877 "../nrnoc/intfire1.cpp", line 360: error: expected an expression
3878 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3879 ^
3880
3881 9 errors detected in the compilation of "../nrnoc/intfire1.cpp".
>> 3882 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2570:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire1.cpp.o] Error
2
>> 3883 "../nrnoc/intfire2.cpp", line 294: error: identifier "_gth" is und
efined
3884 if (gind) { _globals = _thread[_gth].get<double*>(); }
3885 ^
3886
>> 3887 "../nrnoc/intfire2.cpp", line 294: error: type name is not allowed
3888 if (gind) { _globals = _thread[_gth].get<double*>(); }
3889 ^
3890
>> 3891 "../nrnoc/intfire2.cpp", line 294: error: expected an expression
3892 if (gind) { _globals = _thread[_gth].get<double*>(); }
3893 ^
3894
>> 3895 "../nrnoc/intfire2.cpp", line 324: error: identifier "_gth" is und
efined
3896 if (gind) { _globals = _thread[_gth].get<double*>(); }
3897 ^
3898
>> 3899 "../nrnoc/intfire2.cpp", line 324: error: type name is not allowed
3900 if (gind) { _globals = _thread[_gth].get<double*>(); }
3901 ^
3902
>> 3903 "../nrnoc/intfire2.cpp", line 324: error: expected an expression
3904 if (gind) { _globals = _thread[_gth].get<double*>(); }
3905 ^
3906
>> 3907 "../nrnoc/intfire2.cpp", line 347: error: identifier "_globals" is
undefined
3908 artcell_net_send ( _tqitem, _args, _pnt, t + firetime ( _t
hreadargscomma_ ib , _libf , 0.0 ) , 1.0 ) ;
3909 ^
3910
>> 3911 "../nrnoc/intfire2.cpp", line 357: error: identifier "_globals" is
undefined
3912 artcell_net_move ( _tqitem, _pnt, firetime ( _threadargsc
omma_ ib , _libf , m ) + t ) ;
3913 ^
3914
>> 3915 "../nrnoc/intfire2.cpp", line 418: error: identifier "_gth" is und
efined
3916 if (gind) { _globals = _thread[_gth].get<double*>(); }
3917 ^
3918
>> 3919 "../nrnoc/intfire2.cpp", line 418: error: type name is not allowed
3920 if (gind) { _globals = _thread[_gth].get<double*>(); }
3921 ^
3922
>> 3923 "../nrnoc/intfire2.cpp", line 418: error: expected an expression
3924 if (gind) { _globals = _thread[_gth].get<double*>(); }
3925 ^
3926
>> 3927 "../nrnoc/intfire2.cpp", line 472: error: identifier "_gth" is und
efined
3928 if (gind) { _globals = _thread[_gth].get<double*>(); }
3929 ^
3930
>> 3931 "../nrnoc/intfire2.cpp", line 472: error: type name is not allowed
3932 if (gind) { _globals = _thread[_gth].get<double*>(); }
3933 ^
3934
>> 3935 "../nrnoc/intfire2.cpp", line 472: error: expected an expression
3936 if (gind) { _globals = _thread[_gth].get<double*>(); }
3937 ^
3938
>> 3939 "../nrnoc/intfire2.cpp", line 503: error: identifier "_gth" is und
efined
3940 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3941 ^
3942
>> 3943 "../nrnoc/intfire2.cpp", line 503: error: type name is not allowed
3944 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3945 ^
3946
>> 3947 "../nrnoc/intfire2.cpp", line 503: error: expected an expression
3948 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3949 ^
3950
>> 3951 "../nrnoc/intfire2.cpp", line 527: error: identifier "_gth" is und
efined
3952 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3953 ^
3954
>> 3955 "../nrnoc/intfire2.cpp", line 527: error: type name is not allowed
3956 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3957 ^
3958
>> 3959 "../nrnoc/intfire2.cpp", line 527: error: expected an expression
3960 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
3961 ^
3962
3963 20 errors detected in the compilation of "../nrnoc/intfire2.cpp".
>> 3964 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2584:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o] Error
2
>> 3965 "../nrnoc/intfire4.cpp", line 425: error: identifier "_gth" is und
efined
3966 if (gind) { _globals = _thread[_gth].get<double*>(); }
3967 ^
3968
>> 3969 "../nrnoc/intfire4.cpp", line 425: error: type name is not allowed
3970 if (gind) { _globals = _thread[_gth].get<double*>(); }
3971 ^
3972
>> 3973 "../nrnoc/intfire4.cpp", line 425: error: expected an expression
3974 if (gind) { _globals = _thread[_gth].get<double*>(); }
3975 ^
3976
>> 3977 "../nrnoc/intfire4.cpp", line 454: error: identifier "_gth" is und
efined
3978 if (gind) { _globals = _thread[_gth].get<double*>(); }
3979 ^
3980
>> 3981 "../nrnoc/intfire4.cpp", line 454: error: type name is not allowed
3982 if (gind) { _globals = _thread[_gth].get<double*>(); }
3983 ^
3984
>> 3985 "../nrnoc/intfire4.cpp", line 454: error: expected an expression
3986 if (gind) { _globals = _thread[_gth].get<double*>(); }
3987 ^
3988
>> 3989 "../nrnoc/intfire4.cpp", line 482: error: identifier "_gth" is und
efined
3990 if (gind) { _globals = _thread[_gth].get<double*>(); }
3991 ^
3992
>> 3993 "../nrnoc/intfire4.cpp", line 482: error: type name is not allowed
3994 if (gind) { _globals = _thread[_gth].get<double*>(); }
3995 ^
3996
>> 3997 "../nrnoc/intfire4.cpp", line 482: error: expected an expression
3998 if (gind) { _globals = _thread[_gth].get<double*>(); }
3999 ^
4000
>> 4001 "../nrnoc/intfire4.cpp", line 510: error: identifier "_gth" is und
efined
4002 if (gind) { _globals = _thread[_gth].get<double*>(); }
4003 ^
4004
>> 4005 "../nrnoc/intfire4.cpp", line 510: error: type name is not allowed
4006 if (gind) { _globals = _thread[_gth].get<double*>(); }
4007 ^
4008
>> 4009 "../nrnoc/intfire4.cpp", line 510: error: expected an expression
4010 if (gind) { _globals = _thread[_gth].get<double*>(); }
4011 ^
4012
>> 4013 "../nrnoc/intfire4.cpp", line 538: error: identifier "_gth" is und
efined
4014 if (gind) { _globals = _thread[_gth].get<double*>(); }
4015 ^
4016
>> 4017 "../nrnoc/intfire4.cpp", line 538: error: type name is not allowed
4018 if (gind) { _globals = _thread[_gth].get<double*>(); }
4019 ^
4020
>> 4021 "../nrnoc/intfire4.cpp", line 538: error: expected an expression
4022 if (gind) { _globals = _thread[_gth].get<double*>(); }
4023 ^
4024
>> 4025 "../nrnoc/intfire4.cpp", line 618: error: identifier "_gth" is und
efined
4026 if (gind) { _globals = _thread[_gth].get<double*>(); }
4027 ^
4028
>> 4029 "../nrnoc/intfire4.cpp", line 618: error: type name is not allowed
4030 if (gind) { _globals = _thread[_gth].get<double*>(); }
4031 ^
4032
>> 4033 "../nrnoc/intfire4.cpp", line 618: error: expected an expression
4034 if (gind) { _globals = _thread[_gth].get<double*>(); }
4035 ^
4036
>> 4037 "../nrnoc/intfire4.cpp", line 669: error: identifier "_gth" is und
efined
4038 if (gind) { _globals = _thread[_gth].get<double*>(); }
4039 ^
4040
>> 4041 "../nrnoc/intfire4.cpp", line 669: error: type name is not allowed
4042 if (gind) { _globals = _thread[_gth].get<double*>(); }
4043 ^
4044
>> 4045 "../nrnoc/intfire4.cpp", line 669: error: expected an expression
4046 if (gind) { _globals = _thread[_gth].get<double*>(); }
4047 ^
4048
>> 4049 "../nrnoc/intfire4.cpp", line 697: error: identifier "_gth" is und
efined
4050 if (gind) { _globals = _thread[_gth].get<double*>(); }
4051 ^
4052
>> 4053 "../nrnoc/intfire4.cpp", line 697: error: type name is not allowed
4054 if (gind) { _globals = _thread[_gth].get<double*>(); }
4055 ^
4056
>> 4057 "../nrnoc/intfire4.cpp", line 697: error: expected an expression
4058 if (gind) { _globals = _thread[_gth].get<double*>(); }
4059 ^
4060
>> 4061 "../nrnoc/intfire4.cpp", line 759: error: identifier "_gth" is und
efined
4062 if (gind) { _globals = _thread[_gth].get<double*>(); }
4063 ^
4064
>> 4065 "../nrnoc/intfire4.cpp", line 759: error: type name is not allowed
4066 if (gind) { _globals = _thread[_gth].get<double*>(); }
4067 ^
4068
>> 4069 "../nrnoc/intfire4.cpp", line 759: error: expected an expression
4070 if (gind) { _globals = _thread[_gth].get<double*>(); }
4071 ^
4072
>> 4073 "../nrnoc/intfire4.cpp", line 774: error: identifier "_globals" is
undefined
4074 newstates ( _threadargscomma_ t - t0 ) ;
4075 ^
4076
>> 4077 "../nrnoc/intfire4.cpp", line 825: error: identifier "_gth" is und
efined
4078 if (gind) { _globals = _thread[_gth].get<double*>(); }
4079 ^
4080
>> 4081 "../nrnoc/intfire4.cpp", line 825: error: type name is not allowed
4082 if (gind) { _globals = _thread[_gth].get<double*>(); }
4083 ^
4084
>> 4085 "../nrnoc/intfire4.cpp", line 825: error: expected an expression
4086 if (gind) { _globals = _thread[_gth].get<double*>(); }
4087 ^
4088
>> 4089 "../nrnoc/intfire4.cpp", line 860: error: identifier "_gth" is und
efined
4090 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4091 ^
4092
>> 4093 "../nrnoc/intfire4.cpp", line 860: error: type name is not allowed
4094 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4095 ^
4096
>> 4097 "../nrnoc/intfire4.cpp", line 860: error: expected an expression
4098 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4099 ^
4100
>> 4101 "../nrnoc/intfire4.cpp", line 884: error: identifier "_gth" is und
efined
4102 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4103 ^
4104
>> 4105 "../nrnoc/intfire4.cpp", line 884: error: type name is not allowed
4106 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4107 ^
4108
>> 4109 "../nrnoc/intfire4.cpp", line 884: error: expected an expression
4110 if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
4111 ^
4112
4113 37 errors detected in the compilation of "../nrnoc/intfire4.cpp".
>> 4114 make[2]: *** [src/nrniv/CMakeFiles/nrniv_lib.dir/build.make:2598:
src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire4.cpp.o] Error
2
4115 make[2]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphw
inshywdpjbfxb7ix/spack-build-vktfsck'
>> 4116 make[1]: *** [CMakeFiles/Makefile2:2920: src/nrniv/CMakeFiles/nrni
v_lib.dir/all] Error 2
4117 make[1]: Leaving directory '/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/
bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git
.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphw
inshywdpjbfxb7ix/spack-build-vktfsck'
>> 4118 make: *** [Makefile:169: all] Error 2
See build log for details:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318268/spack-build/spack-stage-neuron-git.dbfe86634a09cf2329eea04707f711237ed86e76_develop-vktfsckdxpwirphwinshywdpjbfxb7ix/spack-build-out.txt
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
srun: error: r1i7n21: task 0: Exited with exit code 1
section_end:1718271223:step_script section_start:1718271223:upload_artifacts_on_failure Uploading artifacts for failed job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=61117 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1318268 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=61203 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1318268 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=61287 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1318268 responseStatus=201 Created token=glcbt-64
section_end:1718271227:upload_artifacts_on_failure section_start:1718271227:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718271229:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
build-nmodl.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718269514:resolve_secrets Resolving secrets
section_end:1718269514:resolve_secrets section_start:1718269514:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2701651711, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 216775, build ref , job ID 1318262
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1318262_PROD_P2160_CP0_C5
Job parameters: memory=160G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2249736
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1318262_PROD_P2160_CP0_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --ntasks=2 --jobid=2249736 --cpus-per-task=8 --mem=160G
section_end:1718269516:prepare_executor section_start:1718269516:prepare_script Preparing environment
Using git from spack modules
Running on r1i4n30 via bbpv1.epfl.ch...
section_end:1718269520:prepare_script section_start:1718269520:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718269521:get_sources section_start:1718269521:restore_cache Restoring cache
Using git from spack modules
Checking cache for build:nmodl-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=206137 revision=58ba2b95 version=14.2.0
cache.zip is up to date 
Successfully extracted cache
section_end:1718269529:restore_cache section_start:1718269529:download_artifacts Downloading artifacts
Using git from spack modules
Downloading artifacts for spack_setup (1318260)...
Runtime platform  arch=amd64 os=linux pid=206240 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok  id=1318260 responseStatus=200 OK token=glcbt-64
section_end:1718269530:download_artifacts section_start:1718269530:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
--- config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318262/spack-config/config.yaml:2 build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318262/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318262/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318262/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318262/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/config.yaml:2 ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:18 extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:37 template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:124 checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:129 deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:134 dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:142 build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:151 locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:205 shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:210 type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:216 bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:227 install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:233 flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:235 keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:240 aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:241 concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:242 containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/config.yaml:243 rm: remove
_builtin debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
--- concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318262/spack-config/concretizer.yaml:2 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:23 targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:38 unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:40 duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775/J1318262_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install nmodl%gcc ~legacy-unit
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2249736/ccache
Config file: /nvme/bbpcihpcproj12/2249736/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Thu Jun 13 11:05:37 2024
Local storage:
Cache size (GB): 0.45 / 0.51 (87.36%)
Files: 5038
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
- nmodl%gcc~legacy-unit
Concretized
--------------------------------
- d3mdhq7 nmodl@git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
==> Installing nmodl-git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb=develop-d3mdhq7gjxncmj42lvxjtytypcjqpwmf [19/19]
==> No binary for nmodl-git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb=develop-d3mdhq7gjxncmj42lvxjtytypcjqpwmf found: installing from source
==> No patches needed for nmodl
==> nmodl: Executing phase: 'cmake'
==> nmodl: Executing phase: 'build'
==> nmodl: Executing phase: 'install'
==> nmodl: Successfully installed nmodl-git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb=develop-d3mdhq7gjxncmj42lvxjtytypcjqpwmf
Stage: 1m 3.83s. Cmake: 5.74s. Build: 1m 26.02s. Install: 3.19s. Post-install: 0.36s. Total: 2m 39.42s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/software/install_gcc-12.3.0-skylake/nmodl-git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb_develop-d3mdhq
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be d3mdhq7gjxncmj42lvxjtytypcjqpwmf
$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")
$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Cache directory: /nvme/bbpcihpcproj12/2249736/ccache
Config file: /nvme/bbpcihpcproj12/2249736/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated: Thu Jun 13 11:10:25 2024
Cacheable calls: 138 / 165 (83.64%)
Hits: 122 / 138 (88.41%)
Direct: 26 / 122 (21.31%)
Preprocessed: 96 / 122 (78.69%)
Misses: 16 / 138 (11.59%)
Uncacheable calls: 27 / 165 (16.36%)
Called for linking: 24 / 27 (88.89%)
No input file: 3 / 27 (11.11%)
Successful lookups:
Direct: 26 / 138 (18.84%)
Preprocessed: 96 / 112 (85.71%)
Local storage:
Cache size (GB): 0.44 / 0.51 (86.43%)
Files: 5011
Cleanups: 1
Hits: 122 / 138 (88.41%)
Misses: 16 / 138 (11.59%)
Reads: 276
Writes: 20
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1718269828:step_script section_start:1718269828:archive_cache Saving cache for successful job
Using git from spack modules
Creating cache build:nmodl-1-non_protected...
Runtime platform  arch=amd64 os=linux pid=209329 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected
Created cache
section_end:1718269850:archive_cache section_start:1718269850:upload_artifacts_on_success Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=209468 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
initial_environment.env: found 1 matching files and directories
spack-build-env.txt: found 1 matching files and directories
spack-build-out.txt: found 1 matching files and directories
spack-configure-args.txt: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1318262 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=209507 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories
Uploading artifacts as "junit" to coordinator... ok id=1318262 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=209549 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1318262 responseStatus=201 Created token=glcbt-64
section_end:1718269853:upload_artifacts_on_success section_start:1718269853:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718269854:cleanup_file_variables Job succeeded
Raw
mac-m1-cmake-build-cmake-on-off-off-address.txt
Running with gitlab-runner 15.4.0 (43b2dc3d)
 on macos-arm64 vGzz-bdp
section_start:1718269408:resolve_secrets Resolving secrets
section_end:1718269408:resolve_secrets section_start:1718269408:prepare_executor Preparing the "shell" executor
Using Shell executor...
section_end:1718269408:prepare_executor section_start:1718269408:prepare_script Preparing environment
Running on bbpmacglr01.bbp.epfl.ch...
section_end:1718269408:prepare_script section_start:1718269408:get_sources Getting source from Git repository
Fetching changes with git depth set to 20...
Initialized empty Git repository in /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/.git/
Created fresh repository.
Checking out dbfe8663 as cornu/use_globals...
Skipping Git submodules setup
section_end:1718269410:get_sources section_start:1718269410:restore_cache Restoring cache
Checking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-cornu/use_globals-1-non_protected...
Runtime platform  arch=arm64 os=darwin pid=21655 revision=43b2dc3d version=15.4.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.
Successfully extracted cache
section_end:1718269410:restore_cache section_start:1718269410:step_script Executing "step_script" stage of the job script
$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command
$ real_python=$(python3 resolve_shim.py)
$ echo "python3=$(command -v python3) is really ${real_python}"
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python
$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv
$ venv/bin/python3 -m ensurepip --upgrade --default-pip
Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmp5343x62w
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmp5343x62w/setuptools-68.2.2-py3-none-any.whl
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmp5343x62w/pip-23.3.1-py3-none-any.whl
Installing collected packages: setuptools, pip
Successfully installed pip-23.3.1 setuptools-68.2.2
$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt
Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (23.3.1)
Collecting pip
Using cached pip-24.0-py3-none-any.whl.metadata (3.6 kB)
Collecting wheel (from -r nrn_requirements.txt (line 1))
Using cached wheel-0.43.0-py3-none-any.whl.metadata (2.2 kB)
Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (68.2.2)
Collecting setuptools (from -r nrn_requirements.txt (line 2))
Using cached setuptools-70.0.0-py3-none-any.whl.metadata (5.9 kB)
Collecting setuptools_scm (from -r nrn_requirements.txt (line 3))
Using cached setuptools_scm-8.1.0-py3-none-any.whl.metadata (6.6 kB)
Collecting scikit-build (from -r nrn_requirements.txt (line 4))
Using cached scikit_build-0.17.6-py3-none-any.whl.metadata (14 kB)
Collecting matplotlib (from -r nrn_requirements.txt (line 5))
Using cached matplotlib-3.9.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (11 kB)
Collecting bokeh<3 (from -r nrn_requirements.txt (line 7))
Using cached bokeh-2.4.3-py3-none-any.whl.metadata (14 kB)
Collecting ipython (from -r nrn_requirements.txt (line 8))
Using cached ipython-8.25.0-py3-none-any.whl.metadata (4.9 kB)
Collecting cython<3 (from -r nrn_requirements.txt (line 9))
Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB)
Collecting packaging (from -r nrn_requirements.txt (line 10))
Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
Collecting pytest<=8.1.1 (from -r nrn_requirements.txt (line 11))
Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB)
Collecting pytest-cov (from -r nrn_requirements.txt (line 12))
Using cached pytest_cov-5.0.0-py3-none-any.whl.metadata (27 kB)
Collecting mpi4py (from -r nrn_requirements.txt (line 13))
Using cached mpi4py-3.1.6-cp310-cp310-macosx_12_0_arm64.whl
Collecting numpy (from -r nrn_requirements.txt (line 14))
Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (61 kB)
Collecting find_libpython (from -r nrn_requirements.txt (line 15))
Using cached find_libpython-0.4.0-py3-none-any.whl.metadata (2.8 kB)
Collecting tomli>=1 (from setuptools_scm->-r nrn_requirements.txt (line 3))
Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB)
Collecting distro (from scikit-build->-r nrn_requirements.txt (line 4))
Using cached distro-1.9.0-py3-none-any.whl.metadata (6.8 kB)
Collecting contourpy>=1.0.1 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting cycler>=0.10 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached fonttools-4.53.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (162 kB)
Collecting kiwisolver>=1.3.1 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.4 kB)
Collecting pillow>=8 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached pillow-10.3.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.2 kB)
Collecting pyparsing>=2.3.1 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB)
Collecting python-dateutil>=2.7 (from matplotlib->-r nrn_requirements.txt (line 5))
Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting Jinja2>=2.9 (from bokeh<3->-r nrn_requirements.txt (line 7))
Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
Collecting PyYAML>=3.10 (from bokeh<3->-r nrn_requirements.txt (line 7))
Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB)
Collecting tornado>=5.1 (from bokeh<3->-r nrn_requirements.txt (line 7))
Using cached tornado-6.4.1-cp38-abi3-macosx_10_9_universal2.whl.metadata (2.5 kB)
Collecting typing-extensions>=3.10.0 (from bokeh<3->-r nrn_requirements.txt (line 7))
Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB)
Collecting decorator (from ipython->-r nrn_requirements.txt (line 8))
Using cached decorator-5.1.1-py3-none-any.whl.metadata (4.0 kB)
Collecting jedi>=0.16 (from ipython->-r nrn_requirements.txt (line 8))
Using cached jedi-0.19.1-py2.py3-none-any.whl.metadata (22 kB)
Collecting matplotlib-inline (from ipython->-r nrn_requirements.txt (line 8))
Using cached matplotlib_inline-0.1.7-py3-none-any.whl.metadata (3.9 kB)
Collecting prompt-toolkit<3.1.0,>=3.0.41 (from ipython->-r nrn_requirements.txt (line 8))
Using cached prompt_toolkit-3.0.47-py3-none-any.whl.metadata (6.4 kB)
Collecting pygments>=2.4.0 (from ipython->-r nrn_requirements.txt (line 8))
Using cached pygments-2.18.0-py3-none-any.whl.metadata (2.5 kB)
Collecting stack-data (from ipython->-r nrn_requirements.txt (line 8))
Using cached stack_data-0.6.3-py3-none-any.whl.metadata (18 kB)
Collecting traitlets>=5.13.0 (from ipython->-r nrn_requirements.txt (line 8))
Using cached traitlets-5.14.3-py3-none-any.whl.metadata (10 kB)
Collecting exceptiongroup (from ipython->-r nrn_requirements.txt (line 8))
Using cached exceptiongroup-1.2.1-py3-none-any.whl.metadata (6.6 kB)
Collecting pexpect>4.3 (from ipython->-r nrn_requirements.txt (line 8))
Using cached pexpect-4.9.0-py2.py3-none-any.whl.metadata (2.5 kB)
Collecting iniconfig (from pytest<=8.1.1->-r nrn_requirements.txt (line 11))
Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
Collecting pluggy<2.0,>=1.4 (from pytest<=8.1.1->-r nrn_requirements.txt (line 11))
Using cached pluggy-1.5.0-py3-none-any.whl.metadata (4.8 kB)
Collecting coverage>=5.2.1 (from coverage[toml]>=5.2.1->pytest-cov->-r nrn_requirements.txt (line 12))
Using cached coverage-7.5.3-cp310-cp310-macosx_11_0_arm64.whl.metadata (8.2 kB)
Collecting parso<0.9.0,>=0.8.3 (from jedi>=0.16->ipython->-r nrn_requirements.txt (line 8))
Using cached parso-0.8.4-py2.py3-none-any.whl.metadata (7.7 kB)
Collecting MarkupSafe>=2.0 (from Jinja2>=2.9->bokeh<3->-r nrn_requirements.txt (line 7))
Using cached MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl.metadata (3.0 kB)
Collecting ptyprocess>=0.5 (from pexpect>4.3->ipython->-r nrn_requirements.txt (line 8))
Using cached ptyprocess-0.7.0-py2.py3-none-any.whl.metadata (1.3 kB)
Collecting wcwidth (from prompt-toolkit<3.1.0,>=3.0.41->ipython->-r nrn_requirements.txt (line 8))
Using cached wcwidth-0.2.13-py2.py3-none-any.whl.metadata (14 kB)
Collecting six>=1.5 (from python-dateutil>=2.7->matplotlib->-r nrn_requirements.txt (line 5))
Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB)
Collecting executing>=1.2.0 (from stack-data->ipython->-r nrn_requirements.txt (line 8))
Using cached executing-2.0.1-py2.py3-none-any.whl.metadata (9.0 kB)
Collecting asttokens>=2.1.0 (from stack-data->ipython->-r nrn_requirements.txt (line 8))
Using cached asttokens-2.4.1-py2.py3-none-any.whl.metadata (5.2 kB)
Collecting pure-eval (from stack-data->ipython->-r nrn_requirements.txt (line 8))
Using cached pure_eval-0.2.2-py3-none-any.whl.metadata (6.2 kB)
Using cached pip-24.0-py3-none-any.whl (2.1 MB)
Using cached wheel-0.43.0-py3-none-any.whl (65 kB)
Using cached setuptools-70.0.0-py3-none-any.whl (863 kB)
Using cached setuptools_scm-8.1.0-py3-none-any.whl (43 kB)
Using cached scikit_build-0.17.6-py3-none-any.whl (84 kB)
Using cached matplotlib-3.9.0-cp310-cp310-macosx_11_0_arm64.whl (7.8 MB)
Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB)
Using cached ipython-8.25.0-py3-none-any.whl (817 kB)
Using cached Cython-0.29.37-py2.py3-none-any.whl (989 kB)
Using cached packaging-24.1-py3-none-any.whl (53 kB)
Using cached pytest-8.1.1-py3-none-any.whl (337 kB)
Using cached pytest_cov-5.0.0-py3-none-any.whl (21 kB)
Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB)
Using cached find_libpython-0.4.0-py3-none-any.whl (8.7 kB)
Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl (244 kB)
Using cached coverage-7.5.3-cp310-cp310-macosx_11_0_arm64.whl (204 kB)
Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
Using cached exceptiongroup-1.2.1-py3-none-any.whl (16 kB)
Using cached fonttools-4.53.0-cp310-cp310-macosx_11_0_arm64.whl (2.2 MB)
Using cached jedi-0.19.1-py2.py3-none-any.whl (1.6 MB)
Using cached jinja2-3.1.4-py3-none-any.whl (133 kB)
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB)
Using cached pexpect-4.9.0-py2.py3-none-any.whl (63 kB)
Using cached pillow-10.3.0-cp310-cp310-macosx_11_0_arm64.whl (3.4 MB)
Using cached pluggy-1.5.0-py3-none-any.whl (20 kB)
Using cached prompt_toolkit-3.0.47-py3-none-any.whl (386 kB)
Using cached pygments-2.18.0-py3-none-any.whl (1.2 MB)
Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB)
Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB)
Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl (169 kB)
Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
Using cached tornado-6.4.1-cp38-abi3-macosx_10_9_universal2.whl (435 kB)
Using cached traitlets-5.14.3-py3-none-any.whl (85 kB)
Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB)
Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB)
Using cached distro-1.9.0-py3-none-any.whl (20 kB)
Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
Using cached matplotlib_inline-0.1.7-py3-none-any.whl (9.9 kB)
Using cached stack_data-0.6.3-py3-none-any.whl (24 kB)
Using cached asttokens-2.4.1-py2.py3-none-any.whl (27 kB)
Using cached executing-2.0.1-py2.py3-none-any.whl (24 kB)
Using cached MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl (18 kB)
Using cached parso-0.8.4-py2.py3-none-any.whl (103 kB)
Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB)
Using cached wcwidth-0.2.13-py2.py3-none-any.whl (34 kB)
Installing collected packages: wcwidth, pure-eval, ptyprocess, find_libpython, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pip, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, executing, exceptiongroup, distro, decorator, cython, cycler, coverage, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython
Attempting uninstall: setuptools
Found existing installation: setuptools 68.2.2
Uninstalling setuptools-68.2.2:
Successfully uninstalled setuptools-68.2.2
Attempting uninstall: pip
Found existing installation: pip 23.3.1
Uninstalling pip-23.3.1:
Successfully uninstalled pip-23.3.1
Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 PyYAML-6.0.1 asttokens-2.4.1 bokeh-2.4.3 contourpy-1.2.1 coverage-7.5.3 cycler-0.12.1 cython-0.29.37 decorator-5.1.1 distro-1.9.0 exceptiongroup-1.2.1 executing-2.0.1 find_libpython-0.4.0 fonttools-4.53.0 iniconfig-2.0.0 ipython-8.25.0 jedi-0.19.1 kiwisolver-1.4.5 matplotlib-3.9.0 matplotlib-inline-0.1.7 mpi4py-3.1.6 numpy-1.26.4 packaging-24.1 parso-0.8.4 pexpect-4.9.0 pillow-10.3.0 pip-24.0 pluggy-1.5.0 prompt-toolkit-3.0.47 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.18.0 pyparsing-3.1.2 pytest-8.1.1 pytest-cov-5.0.0 python-dateutil-2.9.0.post0 scikit-build-0.17.6 setuptools-70.0.0 setuptools_scm-8.1.0 six-1.16.0 stack-data-0.6.3 tomli-2.0.1 tornado-6.4.1 traitlets-5.14.3 typing-extensions-4.12.2 wcwidth-0.2.13 wheel-0.43.0
$ git submodule update --init --recursive --force --depth 1 -- external/nmodl
Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl'
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/nmodl'...
From https://github.com/BlueBrain/nmodl
* branch 70553cc4d9092aafed42aa49ac4e730830af1124 -> FETCH_HEAD
Submodule path 'external/nmodl': checked out '70553cc4d9092aafed42aa49ac4e730830af1124'
Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions'
Submodule 'ext/backward' (https://github.com/bombela/backward-cpp.git) registered for path 'external/nmodl/ext/backward'
Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2'
Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11'
Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen'
Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt'
Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json'
Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11'
Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog'
Submodule 'test/usecases/references' (https://github.com/BlueBrain/nmodl-references.git) registered for path 'external/nmodl/test/usecases/references'
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'...
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/nmodl/ext/backward'...
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/nmodl/ext/catch2'...
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/nmodl/ext/cli11'...
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/nmodl/ext/eigen'...
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/nmodl/ext/fmt'...
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/nmodl/ext/json'...
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/nmodl/ext/pybind11'...
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/nmodl/ext/spdlog'...
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/nmodl/test/usecases/references'...
Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out '8f8115597817365c5c4fa39e217b3ab0b3640cb2'
Submodule path 'external/nmodl/ext/backward': checked out '51f0700452cf71c57d43c2d028277b24cde32502'
From https://github.com/catchorg/Catch2
* branch 8ac8190e494a381072c89f5e161b92a08d98b37b -> FETCH_HEAD
Submodule path 'external/nmodl/ext/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b'
From https://github.com/CLIUtils/CLI11
* branch f4d0731cebb123ff0ace712c099dffbcd2c58e5a -> FETCH_HEAD
Submodule path 'external/nmodl/ext/cli11': checked out 'f4d0731cebb123ff0ace712c099dffbcd2c58e5a'
From https://gitlab.com/libeigen/eigen
* branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
From https://github.com/fmtlib/fmt
* branch e69e5f977d458f2650bb346dadf2ad30c5320281 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/fmt': checked out 'e69e5f977d458f2650bb346dadf2ad30c5320281'
From https://github.com/nlohmann/json
* branch 9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/json': checked out '9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03'
From https://github.com/pybind/pybind11
* branch 8a099e44b3d5f85b20f05828d919d2332a8de841 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/pybind11': checked out '8a099e44b3d5f85b20f05828d919d2332a8de841'
From https://github.com/gabime/spdlog
* branch 7c02e204c92545f869e2f04edaab1f19fe8b19fd -> FETCH_HEAD
Submodule path 'external/nmodl/ext/spdlog': checked out '7c02e204c92545f869e2f04edaab1f19fe8b19fd'
From https://github.com/BlueBrain/nmodl-references
* branch c9f0aaa9270e9a49598c5424ad03eaa48a7eec47 -> FETCH_HEAD
Submodule path 'external/nmodl/test/usecases/references': checked out 'c9f0aaa9270e9a49598c5424ad03eaa48a7eec47'
$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt
Ignoring importlib-metadata: markers 'python_version < "3.9"' don't match your environment
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Using cached httpcore-1.0.5-py3-none-any.whl.metadata (20 kB)
Collecting h11<0.15,>=0.13 (from httpcore==1.*->httpx>=0.25.0->jupyterlab<4.3,>=4.2.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached h11-0.14.0-py3-none-any.whl.metadata (8.2 kB)
Requirement already satisfied: parso<0.9.0,>=0.8.3 in ./venv/lib/python3.10/site-packages (from jedi>=0.16->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) (0.8.4)
Collecting python-json-logger>=2.0.4 (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached python_json_logger-2.0.7-py3-none-any.whl.metadata (6.5 kB)
Collecting rfc3339-validator (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached rfc3339_validator-0.1.4-py2.py3-none-any.whl.metadata (1.5 kB)
Collecting rfc3986-validator>=0.1.1 (from jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached rfc3986_validator-0.1.1-py2.py3-none-any.whl.metadata (1.7 kB)
Requirement already satisfied: ptyprocess>=0.5 in ./venv/lib/python3.10/site-packages (from pexpect>4.3->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) (0.7.0)
Requirement already satisfied: executing>=1.2.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) (2.0.1)
Requirement already satisfied: asttokens>=2.1.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) (2.4.1)
Requirement already satisfied: pure-eval in ./venv/lib/python3.10/site-packages (from stack-data->ipython>=7.23.1->ipykernel->jupyter->-r external/nmodl/requirements.txt (line 17)) (0.2.2)
Collecting fqdn (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached fqdn-1.5.1-py3-none-any.whl.metadata (1.4 kB)
Collecting isoduration (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached isoduration-20.11.0-py3-none-any.whl.metadata (5.7 kB)
Collecting jsonpointer>1.13 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached jsonpointer-3.0.0-py2.py3-none-any.whl.metadata (2.3 kB)
Collecting uri-template (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached uri_template-1.3.0-py3-none-any.whl.metadata (8.8 kB)
Collecting webcolors>=1.11 (from jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached webcolors-24.6.0-py3-none-any.whl.metadata (2.6 kB)
Collecting cffi>=1.0.1 (from argon2-cffi-bindings->argon2-cffi>=21.1->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached cffi-1.16.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (1.5 kB)
Collecting pycparser (from cffi>=1.0.1->argon2-cffi-bindings->argon2-cffi>=21.1->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached pycparser-2.22-py3-none-any.whl.metadata (943 bytes)
Collecting arrow>=0.15.0 (from isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached arrow-1.3.0-py3-none-any.whl.metadata (7.5 kB)
Collecting types-python-dateutil>=2.8.10 (from arrow>=0.15.0->isoduration->jsonschema[format-nongpl]>=4.18.0->jupyter-events>=0.9.0->jupyter-server<3,>=2.4.0->notebook->jupyter->-r external/nmodl/requirements.txt (line 17))
Using cached types_python_dateutil-2.9.0.20240316-py3-none-any.whl.metadata (1.8 kB)
Using cached scikit_build_core-0.9.5-py3-none-any.whl (152 kB)
Using cached sympy-1.12.1-py3-none-any.whl (5.7 MB)
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Using cached mistune-2.0.5-py2.py3-none-any.whl (24 kB)
Using cached nbconvert-7.16.4-py3-none-any.whl (257 kB)
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Installing collected packages: webencodings, snowballstemmer, mpmath, mistune, fastjsonschema, widgetsnbextension, websocket-client, webcolors, urllib3, uri-template, types-python-dateutil, tinycss2, terminado, sympy, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, sniffio, send2trash, rpds-py, rfc3986-validator, rfc3339-validator, qtpy, pyzmq, python-json-logger, pycparser, psutil, prometheus-client, platformdirs, pathspec, pandocfilters, overrides, nest-asyncio, mdurl, jupyterlab-widgets, jupyterlab-pygments, jsonpointer, json5, imagesize, idna, h11, fqdn, docutils, defusedxml, debugpy, comm, charset-normalizer, certifi, bleach, babel, attrs, async-lru, appnope, alabaster, scikit-build-core, requests, referencing, markdown-it-py, jupyter-server-terminals, jupyter-core, httpcore, cffi, beautifulsoup4, arrow, anyio, sphinx, mdit-py-plugins, jupyter-client, jsonschema-specifications, isoduration, httpx, argon2-cffi-bindings, sphinxcontrib-jquery, myst_parser, jsonschema, ipywidgets, ipykernel, argon2-cffi, sphinx-rtd-theme, qtconsole, nbformat, jupyter-console, nbclient, jupyter-events, nbconvert, nbsphinx, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab, notebook, jupyter
Successfully installed alabaster-0.7.16 anyio-4.4.0 appnope-0.1.4 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 async-lru-2.0.4 attrs-23.2.0 babel-2.15.0 beautifulsoup4-4.12.3 bleach-6.1.0 certifi-2024.6.2 cffi-1.16.0 charset-normalizer-3.3.2 comm-0.2.2 debugpy-1.8.1 defusedxml-0.7.1 docutils-0.19 fastjsonschema-2.19.1 fqdn-1.5.1 h11-0.14.0 httpcore-1.0.5 httpx-0.27.0 idna-3.7 imagesize-1.4.1 ipykernel-6.29.4 ipywidgets-8.1.3 isoduration-20.11.0 json5-0.9.25 jsonpointer-3.0.0 jsonschema-4.22.0 jsonschema-specifications-2023.12.1 jupyter-1.0.0 jupyter-client-8.6.2 jupyter-console-6.6.3 jupyter-core-5.7.2 jupyter-events-0.10.0 jupyter-lsp-2.2.5 jupyter-server-2.14.1 jupyter-server-terminals-0.5.3 jupyterlab-4.2.2 jupyterlab-pygments-0.3.0 jupyterlab-server-2.27.2 jupyterlab-widgets-3.0.11 markdown-it-py-2.2.0 mdit-py-plugins-0.3.5 mdurl-0.1.2 mistune-2.0.5 mpmath-1.3.0 myst_parser-1.0.0 nbclient-0.10.0 nbconvert-7.16.4 nbformat-5.10.4 nbsphinx-0.9.4 nest-asyncio-1.6.0 notebook-7.2.1 notebook-shim-0.2.4 overrides-7.7.0 pandocfilters-1.5.1 pathspec-0.12.1 platformdirs-4.2.2 prometheus-client-0.20.0 psutil-5.9.8 pycparser-2.22 python-json-logger-2.0.7 pyzmq-26.0.3 qtconsole-5.5.2 qtpy-2.4.1 referencing-0.35.1 requests-2.32.3 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.18.1 scikit-build-core-0.9.5 send2trash-1.8.3 sniffio-1.3.1 snowballstemmer-2.2.0 soupsieve-2.5 sphinx-5.3.0 sphinx-rtd-theme-2.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 sympy-1.12.1 terminado-0.18.1 tinycss2-1.3.0 types-python-dateutil-2.9.0.20240316 uri-template-1.3.0 urllib3-2.2.1 webcolors-24.6.0 webencodings-0.5.1 websocket-client-1.8.0 widgetsnbextension-4.0.11
$ source ./venv/bin/activate
$ export PYTHON=${PWD}/venv/bin/python
$ ${PYTHON} --version
Python 3.10.13
$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"
$ export CXX=${CXX:-g++}
$ export CC=${CC:-gcc}
$ brew install flex bison
Warning: flex 2.6.4_2 is already installed and up-to-date.
To reinstall 2.6.4_2, run:
brew reinstall flex
Warning: bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
brew reinstall bison
$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"
$ export INSTALL_DIR=$(pwd)/install
$ echo $LANG
$ echo $LC_ALL
$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")
$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'
$ cmake_args=(-G Ninja)
$ if [[ -n "${sanitizer}" ]]; then
$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))
$ fi
$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})
$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")
$ mkdir build && cd build
$ echo "Building with ${cmake_args[@]}"
Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/venv/bin/python
$ cmake .. "${cmake_args[@]}"
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check
-- Sub-module : missing external/coding-conventions : running git submodule update --init
Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions'
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/coding-conventions'...
Submodule path 'external/coding-conventions': checked out '3d157f9c8ea94d196a825aaa7f523265e360dc4b'
-- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123
Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123'
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/Random123'...
From https://github.com/BlueBrain/Random123
* branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD
Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1'
-- 3rd party project: using Random123 from "external/Random123"
-- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen
Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen'
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/eigen'...
From https://gitlab.com/libeigen/eigen
* branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
-- 3rd party project: using eigen from "external/eigen"
-- Enabling sanitizers: address
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
-- Checking if /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/venv/bin/python is a working python
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2")
-- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6")
-- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include
-- Found MPI_C: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1")
-- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11
Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11'
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/CLI11'...
From https://github.com/CLIUtils/CLI11
* branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD
Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2'
-- 3rd party project: using CLI11 from "external/CLI11"
CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required):
Compatibility with CMake < 3.5 will be removed from a future version of
CMake.
Update the VERSION argument <min> value or use a ...<max> suffix to tell
CMake that the project does not need compatibility with older versions.
-- Building CoreNEURON
-- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)")
-- Found Perl: /usr/bin/perl (found version "5.30.3")
-- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH)
-- Sub-project : using nmodl from from /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/nmodl
-- CHECKING FOR FLEX/BISON
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0")
-- Adding Flex include path as : /opt/homebrew/opt/flex/include/
-- NMODL_TEST_FORMATTING: OFF
-- NMODL_GIT_HOOKS: OFF
-- NMODL_GIT_COMMIT_HOOKS:
-- NMODL_GIT_PUSH_HOOKS: courtesy-msg
-- NMODL_STATIC_ANALYSIS: OFF
-- NMODL_TEST_STATIC_ANALYSIS: OFF
-- 3rd party project: using eigen from "ext/eigen"
-- 3rd party project: using fmt from "ext/fmt"
-- Version: 10.2.1
-- Build type: Custom
-- 3rd party project: using json from "ext/json"
-- Using the multi-header code from /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/nmodl/ext/json/include/
-- 3rd party project: using pybind11 from "ext/pybind11"
-- pybind11 v2.11.1
CMake Warning (dev) at external/nmodl/ext/pybind11/tools/FindPythonLibsNew.cmake:98 (find_package):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
Call Stack (most recent call first):
external/nmodl/ext/pybind11/tools/pybind11Tools.cmake:50 (find_package)
external/nmodl/ext/pybind11/tools/pybind11Common.cmake:188 (include)
external/nmodl/ext/pybind11/CMakeLists.txt:210 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PythonInterp: /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.6")
-- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- 3rd party project: using spdlog from "ext/spdlog"
-- Build spdlog: 1.13.0
CMake Warning (dev) at external/nmodl/ext/spdlog/CMakeLists.txt:91 (option):
Policy CMP0077 is not set: option() honors normal variables. Run "cmake
--help-policy CMP0077" for policy details. Use the cmake_policy command to
set the policy and suppress this warning.
For compatibility with older versions of CMake, option is clearing the
normal variable 'SPDLOG_FMT_EXTERNAL'.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Build type: Custom
-- CHECKING FOR PYTHON
CMake Warning (dev) at external/nmodl/CMakeLists.txt:173 (find_package):
Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
are removed. Run "cmake --help-policy CMP0148" for policy details. Use
the cmake_policy command to set the policy and suppress this warning.
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found PythonInterp: /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.8")
--
-- Configured NMODL 0.0 (70553cc 2024-05-01 23:16:44 +0200)
--
-- You can now build NMODL using:
-- cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------------+--------------------------------------------------------
-- Target | Description
-- --------------------+--------------------------------------------------------
-- test | Run unit tests
-- install | Will install NMODL to: /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/install
-- --------------------+--------------------------------------------------------
-- Build option | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER | /usr/bin/g++
-- COMPILE FLAGS | -O1 -g -openmp-simd
-- Build Type | Custom
-- Python Bindings | OFF
-- Flex | /opt/homebrew/opt/flex/bin/flex
-- Bison | /opt/homebrew/opt/bison/bin/bison
-- Python | /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/venv/bin/python
-- Linked against | ON
-- --------------------+--------------------------------------------------------
-- See documentation : https://github.com/BlueBrain/nmodl/
-- --------------------+--------------------------------------------------------
--
--
-- CoreNEURON is enabled with following build configuration:
-- --------------------+--------------------------------------------------------
-- Build option | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER | /usr/bin/g++
-- COMPILE FLAGS | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Build Type | SHARED
-- MPI | ON
-- DYNAMIC | OFF
-- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include
-- OpenMP | ON
-- NMODL PATH | /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/bin/nmodl
-- NMODL FLAGS |
-- GPU Support | OFF
-- Auto Timeout | ON
-- Wrap exp() | OFF
-- SplayTree Queue | ON
-- NetReceive Buffer | ON
-- Caliper | OFF
-- Likwid | OFF
-- Unit Tests | ON
-- Reporting | OFF
-- --------------------+--------------------------------------------------------
--
Extracting link flags from target 'nrngnu', beware that this can be fragile. Got:
Extracting link flags from target 'sparse13', beware that this can be fragile. Got:
Generating link flags from name 'nrnpython', beware that this can be fragile. Got: -lnrnpython
Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: -lnrnpython
Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
-- Sub-module : missing /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/catch2 : running git submodule update --init
Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2'
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/catch2'...
Submodule path 'external/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b'
-- Found Python module 'pytest' with version(s): 8.1.1
-- Found Python module 'pytest_cov' with version(s): 5.0.0
-- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata
Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata'
Cloning into '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/test/rxd/testdata'...
From https://github.com/neuronsimulator/rxdtestdata
* branch 30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD
Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58'
-- 3rd party project: using rxd/testdata from "test/rxd/testdata"
-- Found Python module 'mpi4py' with version(s): 3.1.6
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_nmodlrandom_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_nmodlrandom_syntax_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_file_mode_py_gpu: gpu not enabled
-- Found Python module 'mpi4py' with version(s): 3.1.6
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled
-- Found OpenSSL: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib (found version "3.2.0")
--
-- Configured NEURON 9.0.0
--
-- You can now build NEURON using:
-- cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------+--------------------------------------------------------------
-- Target | Description
-- --------------+--------------------------------------------------------------
-- install | Will install NEURON to: /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/install
-- | Change the install location of NEURON using:
-- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path>
-- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean
-- uninstall | Removes files installed by make install (todo)
-- --------------+--------------------------------------------------------------
-- Build option | Status
-- --------------+--------------------------------------------------------------
-- C COMPILER | /usr/bin/gcc
-- CXX COMPILER | /usr/bin/g++
-- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug)
-- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd
-- Shared | ON
-- MPI | ON
-- DYNAMIC | OFF
-- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include
-- LIB | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Python | ON
-- DYNAMIC | OFF
-- MODULE | ON
-- python3.10 (default)
-- EXE | /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/venv/bin/python
-- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10
-- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd
-- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd
-- RX3D | OFF
-- Interviews | OFF
-- CoreNEURON | ON
-- PATH | /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/coreneuron
-- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Tests | ON
-- --------------+--------------------------------------------------------------
-- See documentation : https://www.neuron.yale.edu/neuron/
-- --------------+--------------------------------------------------------------
--
-- Configuring done (25.7s)
-- Generating done (0.1s)
-- Build files have been written to: /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build
$ ccache -z
Statistics zeroed
$ ccache -vs 2>/dev/null
Cache directory: /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/ccache
Config file: /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf
Stats updated: Thu Jun 13 11:04:46 2024
Local storage:
Cache size (GiB): 0.0 / 5.0 ( 0.00%)
Files: 0
Hits: 0
Misses: 0
Reads: 0
Writes: 0
$ cmake --build . --parallel
[0/2] Re-checking globbed directories...
[1/1930] Generating share/nrn/demo/demo.hoc
[2/1930] Generating share/nrn/demo/cycle.hoc
[3/1930] Generating share/nrn/demo/dend3.ses
[4/1930] Generating share/nrn/demo/d3init.hoc
[5/1930] Generating share/nrn/demo/demo.ses
[6/1930] Generating share/nrn/demo/dend3/control.hoc
[7/1930] Generating share/nrn/demo/dend3/dend3.nrn
[8/1930] Generating share/nrn/demo/dend3/syn3.hoc
[9/1930] Generating share/nrn/demo/dynclamp.ses
[10/1930] Generating share/nrn/demo/hh.hoc
[11/1930] Generating share/nrn/demo/dynchan.ses
[12/1930] Generating share/nrn/demo/dynclamp.hoc
[13/1930] Generating share/nrn/demo/hh.ses
[14/1930] Generating share/nrn/demo/nomodel.hoc
[15/1930] Generating share/nrn/demo/pyramid.nrn
[16/1930] Generating share/nrn/demo/pyramid.ses
[17/1930] Update hh.mod for CoreNEURON compatibility
[18/1930] Generating share/nrn/demo/reconst.hoc
[19/1930] Generating share/nrn/demo/release.hoc
[20/1930] Generating share/nrn/demo/release/cabpump.mod
[21/1930] Generating share/nrn/demo/release.ses
[22/1930] Generating share/nrn/demo/release/cachan1.mod
[23/1930] Generating share/nrn/demo/release/capump.mod
[24/1930] Generating share/nrn/demo/release/invlfire.mod
[25/1930] Generating share/nrn/demo/release/camchan.mod
[26/1930] Generating share/nrn/demo/release/nacaex.mod
[27/1930] Generating share/nrn/demo/release/release.mod
[28/1930] Generating share/nrn/demo/release/khhchan.mod
[29/1930] Generating share/nrn/demo/release/nachan.mod
[30/1930] Generating share/nrn/demo/singhh.hoc
[31/1930] Generating share/nrn/demo/singhh.ses
[32/1930] Generating share/nrn/demo/singhhchan.hoc
[33/1930] Generating share/nrn/demo/sync/cell.hoc
[34/1930] Generating share/nrn/demo/sync/demosync.hoc
[35/1930] Generating share/nrn/demo/sync/init.hoc
[36/1930] Generating share/nrn/demo/sync/spkplot.hoc
[37/1930] Generating share/nrn/demo/sync/start.ses
[38/1930] Generating share/nrn/demo/sync/synchronize.hoc
[39/1930] Generating share/nrn/lib/auditscripts/notes
[40/1930] Generating share/nrn/lib/cleanup
[41/1930] Generating share/nrn/lib/auditscripts/gettarname
[42/1930] Generating share/nrn/demo/testca.hoc
[43/1930] Generating share/nrn/lib/helpdict
[44/1930] Generating share/nrn/lib/auditscripts/saveaudit
[45/1930] Generating share/nrn/lib/auditscripts/hocaudit.sh
[46/1930] Generating share/nrn/lib/auditscripts/retrieve.sh
[47/1930] Generating share/nrn/lib/hoc/binfo.hoc
[48/1930] Generating share/nrn/lib/hoc/attshape.hoc
[49/1930] Generating share/nrn/lib/hoc/atoltool.hoc
[50/1930] Generating share/nrn/lib/hoc/celbild/celgeom.hoc
[51/1930] Generating share/nrn/lib/hoc/celbild.hoc
[52/1930] Generating share/nrn/lib/hoc/celbild/celmang.hoc
[53/1930] Generating share/nrn/lib/hoc/celbild/celset.hoc
[54/1930] Generating share/nrn/lib/hoc/celbild/celbild1.hoc
[55/1930] Generating share/nrn/lib/hoc/celbild/celmemb.hoc
[56/1930] Generating share/nrn/lib/hoc/celbild/celtopol.hoc
[57/1930] Generating share/nrn/lib/hoc/celbild/psubset.hoc
[58/1930] Generating share/nrn/lib/hoc/celbild/inhomofn.hoc
[59/1930] Generating share/nrn/lib/hoc/chanbild.hoc
[60/1930] Generating share/nrn/lib/hoc/chanbild/chanbild1.hoc
[61/1930] Generating share/nrn/lib/hoc/chanbild/const.hoc
[62/1930] Generating share/nrn/lib/hoc/chanbild/ksgate.hoc
[63/1930] Generating share/nrn/lib/hoc/chanbild/gategui.hoc
[64/1930] Generating share/nrn/lib/hoc/chanbild/kschanbg.hoc
[65/1930] Generating share/nrn/lib/hoc/chanbild/kstgui.hoc
[66/1930] Generating share/nrn/lib/hoc/chanbild/exp.hoc
[67/1930] Generating share/nrn/lib/hoc/chanbild/kstrans.hoc
[68/1930] Generating share/nrn/lib/hoc/chanbild/ksstate.hoc
[69/1930] Generating share/nrn/lib/hoc/chanbild/properties.hoc
[70/1930] Generating share/nrn/lib/hoc/chanbild/linoid.hoc
[71/1930] Generating share/nrn/lib/hoc/chanbild/table.hoc
[72/1930] Generating share/nrn/lib/hoc/funfit.hoc
[73/1930] Generating share/nrn/lib/hoc/corenrn.hoc
[74/1930] Generating share/nrn/lib/hoc/electrod.hoc
[75/1930] Generating share/nrn/lib/hoc/gatherv.hoc
[76/1930] Generating share/nrn/lib/hoc/chanbild/sigmoid.hoc
[77/1930] Generating share/nrn/lib/hoc/family.hoc
[78/1930] Generating share/nrn/lib/hoc/grapher.hoc
[79/1930] Generating share/nrn/lib/hoc/impedanc.hoc
[80/1930] Generating share/nrn/lib/hoc/import3d.hoc
[81/1930] Generating share/nrn/lib/hoc/impedanx.hoc
[82/1930] Generating share/nrn/lib/hoc/import3d/import3d_sec.hoc
[83/1930] Generating share/nrn/lib/hoc/import3d/read_nlcda.hoc
[84/1930] Generating share/nrn/lib/hoc/import3d/read_morphml.hoc
[85/1930] Generating share/nrn/lib/hoc/import3d/read_nlcda3.hoc
[86/1930] Generating share/nrn/lib/hoc/import3d/read_nts.hoc
[87/1930] Generating share/nrn/lib/hoc/import3d/import3d_gui.hoc
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[477/1930] -- NMODL : GENERATING AST CLASSES WITH PYTHON GENERATOR! --
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29 | %name-prefix "Verbatim_"
| ^~~~~~~~~~~~~~~~~~~~~~~~
| %define api.prefix {Verbatim_}
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56 | %define parser_class_name {DiffeqParser}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.parser.class {DiffeqParser}
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49 | %define parser_class_name {UnitParser}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.parser.class {UnitParser}
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52 | %define parser_class_name {CParser}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| %define api.parser.class {CParser}
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64 | %define parser_class_name {NmodlParser}
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[575/1930] Generating ../../share/nrn/nrnmain.cpp
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[578/1930] Generating ../oc/hocusr.h
[579/1930] cd /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrniv && true
[580/1930] Generating ../../include/nrnconf.h
[581/1930] Building CXX object src/nrnpython/CMakeFiles/rxdmath.dir/rxdmath.cpp.o
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[616/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/c11_base_lexer.cpp.o
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[620/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_neuron_cpp_visitor.cpp.o
[621/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/nmodl_base_lexer.cpp.o
[622/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/verbatim_parser.cpp.o
[623/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/c11_driver.cpp.o
[624/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/unit_driver.cpp.o
[625/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_cpp_visitor.cpp.o
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[627/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq/diffeq_parser.cpp.o
[628/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/unit/unit_parser.cpp.o
[629/1930] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol_properties.cpp.o
[630/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_coreneuron_cpp_visitor.cpp.o
[631/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/units/units.cpp.o
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[635/1930] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol.cpp.o
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[638/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/implicit_argument_visitor.cpp.o
[639/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/after_cvode_to_cnexp_visitor.cpp.o
[640/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/constant_folder_visitor.cpp.o
[641/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/index_remover.cpp.o
[642/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/nmodl/nmodl_parser.cpp.o
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[647/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/perf_visitor.cpp.o
[648/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/solve_block_visitor.cpp.o
[649/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/loop_unroll_visitor.cpp.o
[650/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/neuron_solve_visitor.cpp.o
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[652/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/localize_visitor.cpp.o
[653/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/ast/ast.cpp.o
[654/1930] Linking CXX static library lib/liblexer.a
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[656/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/semantic_analysis_visitor.cpp.o
[657/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/var_usage_visitor.cpp.o
[658/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/kinetic_block_visitor.cpp.o
[659/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/verbatim_visitor.cpp.o
[660/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/rename_visitor.cpp.o
[661/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/units_visitor.cpp.o
[662/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/ast_visitor.cpp.o
[663/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/steadystate_visitor.cpp.o
[664/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/lookup_visitor.cpp.o
[665/1930] Linking CXX static library lib/libpywrapper.a
[666/1930] Linking CXX executable bin/nocmodl
[667/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/json_visitor.cpp.o
[668/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/verbatim_var_rename_visitor.cpp.o
[669/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_marching_cubes.cpp.o
[670/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_llgramarea.cpp.o
[671/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/catch_chronometer.cpp.o
[672/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/visitor_utils.cpp.o
[673/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_benchmark_function.cpp.o
[674/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_replace_solutions_visitor.cpp.o
[675/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/nmodl_visitor.cpp.o
[676/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_intracellular.cpp.o
[677/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/checkparent_visitor.cpp.o
[678/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_conductance_visitor.cpp.o
[679/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_analyse.cpp.o
[680/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generator_exception.cpp.o
[681/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_run_for_at_least.cpp.o
[682/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generators.cpp.o
[683/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_stats.cpp.o
[684/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generators_random.cpp.o
[685/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_automake.cpp.o
[686/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_vol.cpp.o
[687/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_common_base.cpp.o
[688/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_compact.cpp.o
[689/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/symtab_visitor.cpp.o
[690/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_event_listener.cpp.o
[691/1930] Generating ../nrnoc/exp2syn.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp
Thread Safe
[692/1930] Generating ../nrnoc/feature.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/feature.cpp
Notice: VERBATIM blocks are not thread safe
[693/1930] Generating ../nrnoc/apcount.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/apcount.cpp
Thread Safe
[694/1930] Generating ../nrnoc/expsyn.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/expsyn.cpp
Thread Safe
[695/1930] Generating ../nrnoc/hh.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/hh.cpp
Thread Safe
[696/1930] Generating ../nrnoc/intfire2.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/intfire2.cpp
Thread Safe
[697/1930] Generating ../nrnoc/netstim.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/netstim.cpp
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[698/1930] Generating ../nrnoc/intfire1.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/intfire1.cpp
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[699/1930] Generating ../nrnoc/intfire4.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/intfire4.cpp
Thread Safe
[700/1930] Generating ../nrnoc/oclmp.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/oclmp.cpp
Thread Safe
[701/1930] Generating ../nrnoc/pattern.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/pattern.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[702/1930] Generating ../nrnoc/ppmark.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/ppmark.cpp
Thread Safe
[703/1930] Generating ../nrnoc/passive.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/passive.cpp
Thread Safe
[704/1930] Generating ../nrnoc/stim.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/stim.cpp
Thread Safe
[705/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_console.cpp.o
[706/1930] Generating ../nrnoc/svclmp.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/svclmp.cpp
Thread Safe
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Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/syn.cpp
Thread Safe
[708/1930] Generating ../nrnoc/vclmp.cpp
Translating /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc/vclmp.cpp
Notice: VERBATIM blocks are not thread safe
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[709/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_cumulative_base.cpp.o
[710/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_solver_visitor.cpp.o
[711/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_registrars.cpp.o
[712/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_helpers.cpp.o
[713/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/apwindow.cpp.o
[714/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/axis.cpp.o
[715/1930] Linking CXX static library lib/libvisitor.a
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[717/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/bndedval.cpp.o
[718/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/cbwidget.cpp.o
[719/1930] Linking CXX static library lib/libcodegen.a
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[725/1930] Linking CXX executable bin/nmodl
[726/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/gifimage.cpp.o
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[729/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grmanip.cpp.o
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[732/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/fourier.cpp.o
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[734/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/graph.cpp.o
[735/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/grglyph.cpp.o
[736/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/mlinedit.cpp.o
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[738/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/mymath.cpp.o
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/ivoc/mymath.cpp:2:14: warning: '#pragma FENV_ACCESS' is not supported on this target - ignored [-Wignored-pragmas]
#pragma STDC FENV_ACCESS ON
^
1 warning generated.
[739/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/oc2iv.cpp.o
[740/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/objcmd.cpp.o
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[744/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ochelp.cpp.o
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[747/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocpicker.cpp.o
[748/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocnoiv1.cpp.o
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[750/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/oclist.cpp.o
[751/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/matrix.cpp.o
[752/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivoc.cpp.o
[753/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ivocvect.cpp.o
[754/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/rect.cpp.o
[755/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/rubband.cpp.o
[756/1930] Running nrnivmodl-core with internal mod files
WARNING: No mod files found in '/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/bin', compiling default ones only!
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
=> Binary creating arm64/special-core
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/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/oc/hoc.cpp:2:14: warning: '#pragma FENV_ACCESS' is not supported on this target - ignored [-Wignored-pragmas]
#pragma STDC FENV_ACCESS ON
^
1 warning generated.
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/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/oc/math.cpp:2:14: warning: '#pragma FENV_ACCESS' is not supported on this target - ignored [-Wignored-pragmas]
#pragma STDC FENV_ACCESS ON
^
1 warning generated.
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[888/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/apcount.cpp.o
FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/apcount.cpp.o
ccache /usr/bin/g++ -DCORENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_ASAN_ENABLED -DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/include -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/ivoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrncvode -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrniv -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrncvode -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/parallel -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/sundials -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/sundials/shared -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/gnu -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnmpi -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/parallel -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/scopmath -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sparse -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sparse13 -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/cvodes -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/ida -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/shared -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrniv/oc_generated -I/opt/homebrew/Cellar/open-mpi/5.0.1/include -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/ivos -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/.. -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../ivoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrniv -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrnmpi -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../ivos -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -isystem /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/eigen -O1 -g -openmp-simd -std=c++17 -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -fPIC -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/apcount.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/apcount.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/apcount.cpp.o -c /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:286:34: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:274:44: note: '_nt' declared here
Datum* _ppvar; Datum* _thread; NrnThread* _nt;
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:286:33: error: array subscript is not an integer
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:317:34: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:305:44: note: '_nt' declared here
Datum* _ppvar; Datum* _thread; NrnThread* _nt;
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:317:33: error: array subscript is not an integer
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:350:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:340:79: note: '_nt' declared here
static void nrn_init(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type){
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:350:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:377:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:365:78: note: '_nt' declared here
static void nrn_cur(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:377:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:397:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:386:80: note: '_nt' declared here
static void nrn_jacob(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:397:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:415:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:405:80: note: '_nt' declared here
static void nrn_state(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/apcount.cpp:415:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
12 errors generated.
[889/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/exp2syn.cpp.o
FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/exp2syn.cpp.o
ccache /usr/bin/g++ -DCORENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_ASAN_ENABLED -DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/include -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/ivoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrncvode -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrniv -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrncvode -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/parallel -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/sundials -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/sundials/shared -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/gnu -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnmpi -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/parallel -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/scopmath -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sparse -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sparse13 -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/cvodes -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/ida -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/shared -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrniv/oc_generated -I/opt/homebrew/Cellar/open-mpi/5.0.1/include -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/ivos -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/.. -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../ivoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrniv -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrnmpi -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../ivos -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -isystem /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/eigen -O1 -g -openmp-simd -std=c++17 -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -fPIC -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/exp2syn.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/exp2syn.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/exp2syn.cpp.o -c /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:360:39: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:350:80: note: '_nt' declared here
static void _ode_spec(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:360:38: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:393:39: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:383:82: note: '_nt' declared here
static void _ode_matsol(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:393:38: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:433:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:423:79: note: '_nt' declared here
static void nrn_init(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type){
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:433:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:466:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:454:78: note: '_nt' declared here
static void nrn_cur(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:466:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:493:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:482:80: note: '_nt' declared here
static void nrn_jacob(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:493:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:511:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:501:80: note: '_nt' declared here
static void nrn_state(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/exp2syn.cpp:511:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
12 errors generated.
[890/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/expsyn.cpp.o
FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/expsyn.cpp.o
ccache /usr/bin/g++ -DCORENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_ASAN_ENABLED -DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/include -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/ivoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrncvode -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrniv -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrncvode -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/parallel -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/sundials -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/sundials/shared -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/gnu -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnmpi -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/parallel -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/scopmath -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sparse -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sparse13 -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/cvodes -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/ida -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/shared -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrniv/oc_generated -I/opt/homebrew/Cellar/open-mpi/5.0.1/include -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/ivos -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/.. -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../ivoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrniv -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrnmpi -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../ivos -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -isystem /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/eigen -O1 -g -openmp-simd -std=c++17 -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -fPIC -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/expsyn.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/expsyn.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/expsyn.cpp.o -c /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:323:39: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:313:80: note: '_nt' declared here
static void _ode_spec(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:323:38: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:356:39: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:346:82: note: '_nt' declared here
static void _ode_matsol(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:356:38: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:384:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:374:79: note: '_nt' declared here
static void nrn_init(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type){
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:384:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:416:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:404:78: note: '_nt' declared here
static void nrn_cur(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:416:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:443:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:432:80: note: '_nt' declared here
static void nrn_jacob(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:443:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:461:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:451:80: note: '_nt' declared here
static void nrn_state(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/expsyn.cpp:461:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
12 errors generated.
[891/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/oc_generated/parse.cpp.o
[892/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/hh.cpp.o
FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/hh.cpp.o
ccache /usr/bin/g++ -DCORENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_ASAN_ENABLED -DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/include -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/ivoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrncvode -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrniv -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrncvode -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/parallel -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/sundials -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/sundials/shared -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/gnu -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnmpi -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/parallel -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/scopmath -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sparse -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sparse13 -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/cvodes -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/ida -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/shared -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrniv/oc_generated -I/opt/homebrew/Cellar/open-mpi/5.0.1/include -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/ivos -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/.. -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../ivoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrniv -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrnmpi -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../ivos -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -isystem /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/eigen -O1 -g -openmp-simd -std=c++17 -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -fPIC -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/hh.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/hh.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/hh.cpp.o -c /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:438:32: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:426:44: note: '_nt' declared here
Datum* _ppvar; Datum* _thread; NrnThread* _nt;
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:438:31: error: array subscript is not an integer
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:454:32: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:447:44: note: '_nt' declared here
Datum* _ppvar; Datum* _thread; NrnThread* _nt;
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:454:31: error: array subscript is not an integer
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:484:32: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:475:44: note: '_nt' declared here
Datum* _ppvar; Datum* _thread; NrnThread* _nt;
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:484:31: error: array subscript is not an integer
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:499:32: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:492:44: note: '_nt' declared here
Datum* _ppvar; Datum* _thread; NrnThread* _nt;
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:499:31: error: array subscript is not an integer
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:517:39: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:507:80: note: '_nt' declared here
static void _ode_spec(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:517:38: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:552:39: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:542:82: note: '_nt' declared here
static void _ode_matsol(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:552:38: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:587:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:577:79: note: '_nt' declared here
static void nrn_init(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type){
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:587:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:626:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:614:78: note: '_nt' declared here
static void nrn_cur(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:626:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:661:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:650:80: note: '_nt' declared here
static void nrn_jacob(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:661:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:679:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/hh.cpp:669:80: note: '_nt' declared here
static void nrn_state(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
20 errors generated.
[893/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/feature.cpp.o
[894/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/oc/code.cpp.o
[895/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire1.cpp.o
FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire1.cpp.o
ccache /usr/bin/g++ -DCORENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_ASAN_ENABLED -DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/include -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/ivoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrncvode -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrniv -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrncvode -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/parallel -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/sundials -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/sundials/shared -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/gnu -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnmpi -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/parallel -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/scopmath -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sparse -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sparse13 -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/cvodes -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/ida -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/shared -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrniv/oc_generated -I/opt/homebrew/Cellar/open-mpi/5.0.1/include -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/ivos -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/.. -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../ivoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrniv -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrnmpi -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../ivos -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -isystem /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/eigen -O1 -g -openmp-simd -std=c++17 -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -fPIC -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire1.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire1.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire1.cpp.o -c /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire1.cpp
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire1.cpp:282:34: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire1.cpp:270:44: note: '_nt' declared here
Datum* _ppvar; Datum* _thread; NrnThread* _nt;
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire1.cpp:282:33: error: array subscript is not an integer
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire1.cpp:336:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire1.cpp:326:79: note: '_nt' declared here
static void nrn_init(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type){
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire1.cpp:336:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire1.cpp:360:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire1.cpp:350:80: note: '_nt' declared here
static void nrn_state(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire1.cpp:360:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
6 errors generated.
[896/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o
FAILED: src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o
ccache /usr/bin/g++ -DCORENRN_BUILD=0 -DHAVE_CONFIG_H -DMPICH_SKIP_MPICXX=1 -DMPI_NO_CPPBIND=1 -DNRN_ASAN_ENABLED -DNRN_ENABLE_THREADS -DOMPI_SKIP_MPICXX=1 -DUSE_PYTHON -Dnrniv_lib_EXPORTS -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/include -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/ivoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrncvode -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrniv -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrncvode -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/parallel -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/sundials -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/sundials/shared -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/gnu -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnmpi -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/parallel -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/scopmath -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sparse -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sparse13 -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/cvodes -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/ida -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/sundials/shared -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrniv/oc_generated -I/opt/homebrew/Cellar/open-mpi/5.0.1/include -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/ivos -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/.. -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../oc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrnoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../ivoc -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrniv -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../nrnmpi -I/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/src/nrnpython/../ivos -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -isystem /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/external/eigen -O1 -g -openmp-simd -std=c++17 -arch arm64 -isysroot /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk -fPIC -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -MD -MT src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o -MF src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o.d -o src/nrniv/CMakeFiles/nrniv_lib.dir/__/nrnoc/intfire2.cpp.o -c /Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:294:34: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:282:44: note: '_nt' declared here
Datum* _ppvar; Datum* _thread; NrnThread* _nt;
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:294:33: error: array subscript is not an integer
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:324:34: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:312:44: note: '_nt' declared here
Datum* _ppvar; Datum* _thread; NrnThread* _nt;
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:324:33: error: array subscript is not an integer
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:347:63: error: use of undeclared identifier '_globals'
artcell_net_send ( _tqitem, _args, _pnt, t + firetime ( _threadargscomma_ ib , _libf , 0.0 ) , 1.0 ) ;
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:48:55: note: expanded from macro '_threadargscomma_'
#define _threadargscomma_ _ml, _iml, _ppvar, _thread, _globals, _nt,
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:357:53: error: use of undeclared identifier '_globals'
artcell_net_move ( _tqitem, _pnt, firetime ( _threadargscomma_ ib , _libf , m ) + t ) ;
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:48:55: note: expanded from macro '_threadargscomma_'
#define _threadargscomma_ _ml, _iml, _ppvar, _thread, _globals, _nt,
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:418:34: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:406:44: note: '_nt' declared here
Datum* _ppvar; Datum* _thread; NrnThread* _nt;
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:418:33: error: array subscript is not an integer
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:472:34: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:460:44: note: '_nt' declared here
Datum* _ppvar; Datum* _thread; NrnThread* _nt;
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:472:33: error: array subscript is not an integer
if (gind) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:503:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:493:79: note: '_nt' declared here
static void nrn_init(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type){
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:503:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:527:37: error: use of undeclared identifier '_gth'; did you mean '_nt'?
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~
_nt
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:517:80: note: '_nt' declared here
static void nrn_state(_nrn_model_sorted_token const& _sorted_token, NrnThread* _nt, Memb_list* _ml_arg, int _type) {
^
/Users/gitlab-runner/builds/2/P216775/J1318259/hpc/cellular/nrn/build/src/nrnoc/intfire2.cpp:527:36: error: array subscript is not an integer
if (gind != 0) { _globals = _thread[_gth].get<double*>(); }
^~~~~
14 errors generated.
[897/1930] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/ocmatrix.cpp.o
ninja: build stopped: subcommand failed.
section_end:1718269569:step_script section_start:1718269569:cleanup_file_variables Cleaning up project directory and file based variables
section_end:1718269569:cleanup_file_variables ERROR: Job failed: exit status 1

Raw
spack-setup.txt
Running with gitlab-runner 15.5.0 (0d4137b8)
 on BB5 map runner pnPo3yJy
section_start:1718269406:resolve_secrets Resolving secrets
section_end:1718269406:resolve_secrets section_start:1718269406:prepare_executor Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1137477038, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 216775, build ref , job ID 1318260
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1318260_PROD_P2160_CP0_C5
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2249728
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J1318260_PROD_P2160_CP0_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775 --ntasks=1 --jobid=2249728 --cpus-per-task=6 --mem=30750M
section_end:1718269408:prepare_executor section_start:1718269408:prepare_script Preparing environment
Using git from spack modules
Running on r1i4n30 via bbpv1.epfl.ch...
section_end:1718269411:prepare_script section_start:1718269411:get_sources Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718269412:get_sources section_start:1718269412:step_script Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then
$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command
$ cat parse_description.py
import os
import re
import requests
pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format(
os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'],
os.environ['CI_EXTERNAL_PULL_REQUEST_IID']),
headers={'Accept': 'application/vnd.github.v3+json'})
pr_body = pr_info.json()["body"]
# match something like NEURON_BRANCH=foo/bar
# special case for SPACK_DEPLOYMENT_SUFFIX=foo/bar
pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+\.]+)$', re.IGNORECASE)
def parse_term(m):
ref_type = m.group(2).lower()
is_deployment_suffix = ref_type == 'suffix' and m.group(1).lower() == 'spack_deployment'
if ref_type not in {'branch', 'tag', 'ref'} and not is_deployment_suffix: return
print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3))
if pr_body is not None:
for pr_body_line in pr_body.splitlines():
if not pr_body_line.startswith('CI_BRANCHES:'): continue
for config_term in pr_body_line[12:].split(','):
pat.sub(parse_term, config_term)
$ (module load unstable python-dev; python parse_description.py) > input_variables.env
$ else
$ cat input_variables.env
$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command
$ set -o allexport
$ . input_variables.env
$ set +o allexport
$ unset MODULEPATH
$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh
$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env
$ echo Preparing to clone Spack into ${PWD}
Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P216775/J1318260
$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then
$ echo Checking out the ${SPACK_BRANCH} of Spack...
Checking out the develop of Spack...
$ module load unstable git
$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack
Cloning into 'spack'...
Updating files: 17% (1938/11305) Updating files: 18% (2035/11305) Updating files: 19% (2148/11305) Updating files: 20% (2261/11305) Updating files: 21% (2375/11305) Updating files: 22% (2488/11305) Updating files: 23% (2601/11305) Updating files: 24% (2714/11305) Updating files: 25% (2827/11305) Updating files: 26% (2940/11305) Updating files: 27% (3053/11305) Updating files: 28% (3166/11305) Updating files: 29% (3279/11305) Updating files: 29% (3347/11305) Updating files: 30% (3392/11305) Updating files: 31% (3505/11305) Updating files: 32% (3618/11305) Updating files: 33% (3731/11305) Updating files: 34% (3844/11305) Updating files: 35% (3957/11305) Updating files: 36% (4070/11305) Updating files: 37% (4183/11305) Updating files: 38% (4296/11305) Updating files: 39% (4409/11305) Updating files: 39% (4521/11305) Updating files: 40% (4522/11305) Updating files: 41% (4636/11305) Updating files: 42% (4749/11305) Updating files: 43% (4862/11305) Updating files: 44% (4975/11305) Updating files: 45% (5088/11305) Updating files: 46% (5201/11305) Updating files: 47% (5314/11305) Updating files: 48% (5427/11305) Updating files: 49% (5540/11305) Updating files: 50% (5653/11305) Updating files: 51% (5766/11305) Updating files: 51% (5832/11305) Updating files: 52% (5879/11305) Updating files: 53% (5992/11305) Updating files: 54% (6105/11305) Updating files: 55% (6218/11305) Updating files: 56% (6331/11305) Updating files: 57% (6444/11305) Updating files: 58% (6557/11305) Updating files: 59% (6670/11305) Updating files: 60% (6783/11305) Updating files: 61% (6897/11305) Updating files: 62% (7010/11305) Updating files: 63% (7123/11305) Updating files: 64% (7236/11305) Updating files: 64% (7289/11305) Updating files: 65% (7349/11305) Updating files: 66% (7462/11305) Updating files: 67% (7575/11305) Updating files: 68% (7688/11305) Updating files: 69% (7801/11305) Updating files: 70% (7914/11305) Updating files: 71% (8027/11305) Updating files: 72% (8140/11305) Updating files: 73% (8253/11305) Updating files: 74% (8366/11305) Updating files: 75% (8479/11305) Updating files: 75% (8587/11305) Updating files: 76% (8592/11305) Updating files: 77% (8705/11305) Updating files: 78% (8818/11305) Updating files: 79% (8931/11305) Updating files: 80% (9044/11305) Updating files: 81% (9158/11305) Updating files: 82% (9271/11305) Updating files: 83% (9384/11305) Updating files: 84% (9497/11305) Updating files: 85% (9610/11305) Updating files: 86% (9723/11305) Updating files: 87% (9836/11305) Updating files: 88% (9949/11305) Updating files: 88% (10019/11305) Updating files: 89% (10062/11305) Updating files: 90% (10175/11305) Updating files: 91% (10288/11305) Updating files: 92% (10401/11305) Updating files: 93% (10514/11305) Updating files: 94% (10627/11305) Updating files: 95% (10740/11305) Updating files: 96% (10853/11305) Updating files: 97% (10966/11305) Updating files: 98% (11079/11305) Updating files: 99% (11192/11305) Updating files: 100% (11305/11305) Updating files: 100% (11305/11305), done.
$ export SPACK_ROOT=${PWD}/spack
$ export SPACK_RESOLVED_COMMIT=$(cd "${SPACK_ROOT}" && git rev-parse HEAD)
$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"
$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"
$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env
$ echo "SPACK_RESOLVED_COMMIT=${SPACK_RESOLVED_COMMIT}" >> spack_clone_variables.env
$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env
$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P216775/J1318260_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ env -0 | sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\|COMMIT\|TAG\)=.\+/p' | xargs -0t spack ${SPACK_EXTRA_FLAGS} configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env
spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED BLUECONFIGS --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=cornu/use_globals SPACK_RESOLVED_COMMIT=1c907696df52686ab4ad2aaa9719fa18dfd91645 GITLAB_PIPELINES_BRANCH=main NEURON_COMMIT=dbfe86634a09cf2329eea04707f711237ed86e76 NMODL_BRANCH=master LIBSONATA_REPORT_BRANCH=master SPACK_BRANCH=develop CI_DEFAULT_BRANCH=master BLUECONFIGS_BRANCH=main
==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=cornu/use_globals
==> SPACK_RESOLVED: ignoring SPACK_RESOLVED_COMMIT=1c907696df52686ab4ad2aaa9719fa18dfd91645
==> GITLAB_PIPELINES: ignoring GITLAB_PIPELINES_BRANCH=main
==> SPACK: ignoring SPACK_BRANCH=develop
==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master
==> BLUECONFIGS: ignoring BLUECONFIGS_BRANCH=main
==> nmodl: resolved branch master to a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb
==> libsonata-report: resolved branch master to 5602aadfa710d6766ce23cd151a1855190271bd8
==> adding config: packages:neuron:require: '@git.dbfe86634a09cf2329eea04707f711237ed86e76=develop'
==> adding config: packages:nmodl:require: '@git.a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb=develop'
==> adding config: packages:libsonata-report:require: '@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop'
$ (cd "${SPACK_ROOT}" && git diff)
$ cat commit-mapping.env
NEURON_COMMIT=dbfe86634a09cf2329eea04707f711237ed86e76
NMODL_COMMIT=a7bf7d97f05c286194bcc7d88d0df7082f7ea5cb
LIBSONATA_REPORT_COMMIT=5602aadfa710d6766ce23cd151a1855190271bd8
$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env
$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env
$ cat commit-mapping.env >> spack_clone_variables.env
$ spack ${SPACK_EXTRA_FLAGS} spec -IL ninja
==> Warning: Expected user 904556 to own /nvme/bbpcihpcproj12, but it is owned by 0
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.18.0-afv7arjarb7nzmlh7c5slkfxykybuqce.spec.json
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64/gcc-10.2.1/patchelf-0.18.0/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.18.0-afv7arjarb7nzmlh7c5slkfxykybuqce.spack
==> Installing "patchelf@=0.18.0%gcc@=10.2.1 ldflags="-static-libstdc++ -static-libgcc" build_system=autotools arch=linux-centos7-x86_64" from a buildcache
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-t4yf34cuvquqp5xd66zybmcfyhwbdlsf.spec.json
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-t4yf34cuvquqp5xd66zybmcfyhwbdlsf.spack
==> Installing "clingo-bootstrap@=spack%gcc@=10.2.1~docs+ipo+optimized+python+static_libstdcpp build_system=cmake build_type=Release generator=make patches=bebb819,ec99431 arch=linux-centos7-x86_64" from a buildcache
Input spec
--------------------------------
- ninja
Concretized
--------------------------------
[e] omn6mm4a3zsbpbkptvdwxs6kkrh6yafw ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env
$ spack ${SPACK_EXTRA_FLAGS} config --scope site add "config:ccache:true"
$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env
$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> commit-mapping.env
$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> spack_clone_variables.env
section_end:1718269509:step_script section_start:1718269509:upload_artifacts_on_success Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=205430 revision=58ba2b95 version=14.2.0
commit-mapping.env: found 1 matching files and directories
input_variables.env: found 1 matching files and directories
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "archive" to coordinator... ok id=1318260 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform  arch=amd64 os=linux pid=205453 revision=58ba2b95 version=14.2.0
spack_clone_variables.env: found 1 matching files and directories
Uploading artifacts as "dotenv" to coordinator... ok id=1318260 responseStatus=201 Created token=glcbt-64
section_end:1718269510:upload_artifacts_on_success section_start:1718269510:cleanup_file_variables Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718269511:cleanup_file_variables Job succeeded
Raw
test-neuron-nmodl-intel-legacy.txt
Log was not fetched because job had status: skipped
Raw
test-neuron-nmodl-intel-shared.txt
Log was not fetched because job had status: skipped
Raw
test-neuron-nmodl-nvhpc-acc-legacy.txt
Log was not fetched because job had status: skipped
Raw
test-neuron-nmodl-nvhpc-acc-shared.txt
Log was not fetched because job had status: skipped
Raw
test-neuron-nmodl-nvhpc-omp-legacy.txt
Log was not fetched because job had status: skipped
Raw
test-neuron-nmodl-nvhpc-omp.txt
Log was not fetched because job had status: skipped
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