Created
March 6, 2024 10:21
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/nmodl/-/pipelines/198676 (:white_check_mark:) running on GitHub PR BlueBrain/nmodl#1201.
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1709718929:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1709718929:resolve_secrets [0Ksection_start:1709718929:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3894929514, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nmodl | |
Pipeline ID 198676, build ref , job ID 1198484 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J1198484_PROD_P30_CP0_C1 | |
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 2072308 | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J1198484_PROD_P30_CP0_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676 --time=1:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676 --ntasks=1 --jobid=2072308 --cpus-per-task=6 --mem=30750M | |
section_end:1709718931:prepare_executor [0Ksection_start:1709718931:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r1i6n20 via bbpv1.epfl.ch... | |
section_end:1709718936:prepare_script [0Ksection_start:1709718936:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1709718937:get_sources [0Ksection_start:1709718937:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
Using git from spack modules | |
[32;1mChecking cache for build:intel-2-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=166968 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
cache.zip is up to date [0;m | |
[32;1mSuccessfully extracted cache[0;m | |
section_end:1709718950:restore_cache [0Ksection_start:1709718950:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
Using git from spack modules | |
[32;1mDownloading artifacts for spack_setup (1198483)...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=167052 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading artifacts from coordinator... ok [0;m id[0;m=1198483 responseStatus[0;m=200 OK token[0;m=64_c5TCg | |
section_end:1709718951:download_artifacts [0Ksection_start:1709718951:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
--- config: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198484/spack-config/config.yaml:2 build_stage: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198484/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198484/spack-build | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198484/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198484/spack-source-cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/config.yaml:2 ccache: True | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:18 extensions: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:151 locks: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:216 bind: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:233 flags: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:240 aliases: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
_builtin debug: False | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
--- concretizer: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198484/spack-config/concretizer.yaml:2 reuse: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676/J1198484_local_config) | |
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = git@bbpgitlab.epfl.ch: | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
Preparing to install nmodl%oneapi +python | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ module load unstable ccache[0;m | |
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676 | |
[32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ ccache --zero-stats[0;m | |
Statistics zeroed | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Cache directory: /nvme/bbpcihpcproj12/2072308/ccache | |
Config file: /nvme/bbpcihpcproj12/2072308/ccache/ccache.conf | |
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
Stats updated: Wed Mar 6 10:56:04 2024 | |
Local storage: | |
Cache size (GB): 0.46 / 0.51 (88.99%) | |
Files: 2676 | |
Hits: 0 | |
Misses: 0 | |
Reads: 0 | |
Writes: 0 | |
[32;1m$ fi[0;m | |
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
Input spec | |
-------------------------------- | |
- nmodl%oneapi+python | |
Concretized | |
-------------------------------- | |
- izyg6kl nmodl@git.82376f4138e881e7a6a056838b467f0fd16e6e0c=develop%oneapi@2023.2.0~ipo~legacy-unit~llvm~llvm_cuda+python build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
[^] l76xnwr ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] mfss4bt ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] qbhlkgj ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] f6wairf ^py-hatchling@1.18.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] lxhgsum ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] slwtska ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] dw56njg ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] quibu6o ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
[32;1m$ set -o pipefail[0;m | |
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676, but it is owned by 0 | |
==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
==> python@3.11.6 : has external module in ['python/3.11.6'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mfss4b | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l76xnw | |
==> Installing nmodl-git.82376f4138e881e7a6a056838b467f0fd16e6e0c=develop-izyg6klxbhinaykng2frz3j5ggoqqx3l [24/24] | |
==> No binary for nmodl-git.82376f4138e881e7a6a056838b467f0fd16e6e0c=develop-izyg6klxbhinaykng2frz3j5ggoqqx3l found: installing from source | |
==> No patches needed for nmodl | |
==> nmodl: Executing phase: 'cmake' | |
==> nmodl: Executing phase: 'build' | |
==> nmodl: Executing phase: 'install' | |
==> nmodl: Successfully installed nmodl-git.82376f4138e881e7a6a056838b467f0fd16e6e0c=develop-izyg6klxbhinaykng2frz3j5ggoqqx3l | |
Stage: 1m 2.53s. Cmake: 10.44s. Build: 1m 5.01s. Install: 0.81s. Post-install: 0.40s. Total: 2m 19.81s | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/software/install_oneapi-2023.2.0-skylake/nmodl-git.82376f4138e881e7a6a056838b467f0fd16e6e0c_develop-izyg6k | |
[32;1m$ set +o pipefail[0;m | |
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
Determined the installed hash to be izyg6klxbhinaykng2frz3j5ggoqqx3l | |
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ ccache --cleanup[0;m | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Cache directory: /nvme/bbpcihpcproj12/2072308/ccache | |
Config file: /nvme/bbpcihpcproj12/2072308/ccache/ccache.conf | |
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
Stats updated: Wed Mar 6 11:00:38 2024 | |
Cacheable calls: 141 / 170 (82.94%) | |
Hits: 139 / 141 (98.58%) | |
Direct: 26 / 139 (18.71%) | |
Preprocessed: 113 / 139 (81.29%) | |
Misses: 2 / 141 ( 1.42%) | |
Uncacheable calls: 29 / 170 (17.06%) | |
Called for linking: 27 / 29 (93.10%) | |
No input file: 2 / 29 ( 6.90%) | |
Successful lookups: | |
Direct: 26 / 141 (18.44%) | |
Preprocessed: 113 / 115 (98.26%) | |
Local storage: | |
Cache size (GB): 0.46 / 0.51 (89.00%) | |
Files: 2680 | |
Hits: 139 / 141 (98.58%) | |
Misses: 2 / 141 ( 1.42%) | |
Reads: 282 | |
Writes: 4 | |
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
section_end:1709719239:step_script [0Ksection_start:1709719239:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mCreating cache build:intel-2-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=169712 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
ccache.tar: found 1 matching files and directories[0;m | |
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/30/build%3Aintel-2-non_protected[0;m | |
[32;1mCreated cache[0;m | |
section_end:1709719260:archive_cache [0Ksection_start:1709719260:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=169793 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
initial_environment.env: found 1 matching files and directories[0;m | |
spack-build-env.txt: found 1 matching files and directories[0;m | |
spack-build-out.txt: found 1 matching files and directories[0;m | |
spack-configure-args.txt: found 1 matching files and directories[0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1198484 responseStatus[0;m=201 Created token[0;m=64_c5TCg | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=169831 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1198484 responseStatus[0;m=201 Created token[0;m=64_c5TCg | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=169854 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1198484 responseStatus[0;m=201 Created token[0;m=64_c5TCg | |
section_end:1709719261:upload_artifacts_on_success [0Ksection_start:1709719261:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1709719262:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1709718930:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1709718930:resolve_secrets [0Ksection_start:1709718930:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1526060332, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nmodl | |
Pipeline ID 198676, build ref , job ID 1198485 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J1198485_PROD_P30_CP1_C2 | |
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 2072309 | |
job state: PD | |
job state: PD | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J1198485_PROD_P30_CP1_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676 --time=1:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676 --ntasks=1 --jobid=2072309 --cpus-per-task=6 --mem=30750M | |
section_end:1709718934:prepare_executor [0Ksection_start:1709718934:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r1i4n20 via bbpv1.epfl.ch... | |
section_end:1709718947:prepare_script [0Ksection_start:1709718947:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1709718949:get_sources [0Ksection_start:1709718949:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
Using git from spack modules | |
[32;1mChecking cache for build:nvhpc-2-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=127815 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
cache.zip is up to date [0;m | |
[32;1mSuccessfully extracted cache[0;m | |
section_end:1709718968:restore_cache [0Ksection_start:1709718968:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
Using git from spack modules | |
[32;1mDownloading artifacts for spack_setup (1198483)...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=127911 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading artifacts from coordinator... ok [0;m id[0;m=1198483 responseStatus[0;m=200 OK token[0;m=64_s_wat | |
section_end:1709718970:download_artifacts [0Ksection_start:1709718970:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
--- config: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198485/spack-config/config.yaml:2 build_stage: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198485/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198485/spack-build | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198485/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198485/spack-source-cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/config.yaml:2 ccache: True | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:18 extensions: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:151 locks: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:216 bind: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:233 flags: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:240 aliases: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
_builtin debug: False | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
--- concretizer: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198485/spack-config/concretizer.yaml:2 reuse: False | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676/J1198485_local_config) | |
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = git@bbpgitlab.epfl.ch: | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
Preparing to install nmodl%nvhpc +python ^bison%gcc^flex%gcc^py-jinja2%gcc^py-sympy%gcc^py-pyyaml%gcc | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ module load unstable ccache[0;m | |
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676 | |
[32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ ccache --zero-stats[0;m | |
Statistics zeroed | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Cache directory: /nvme/bbpcihpcproj12/2072309/ccache | |
Config file: /nvme/bbpcihpcproj12/2072309/ccache/ccache.conf | |
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
Stats updated: Wed Mar 6 10:56:38 2024 | |
Local storage: | |
Cache size (GB): 0.45 / 0.51 (88.67%) | |
Files: 2747 | |
Hits: 0 | |
Misses: 0 | |
Reads: 0 | |
Writes: 0 | |
[32;1m$ fi[0;m | |
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
Input spec | |
-------------------------------- | |
- nmodl%nvhpc+python | |
- ^bison%gcc | |
- ^flex%gcc | |
- ^py-jinja2%gcc | |
- ^py-pyyaml%gcc | |
- ^py-sympy%gcc | |
Concretized | |
-------------------------------- | |
- sofmlx7 nmodl@git.82376f4138e881e7a6a056838b467f0fd16e6e0c=develop%nvhpc@23.1~ipo~legacy-unit~llvm~llvm_cuda+python build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
[e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
[^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
[^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
[e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
[e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
[^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
[e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
[^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
[^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
[^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
[^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
[^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
[^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
[^] l76xnwr ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] mfss4bt ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] qbhlkgj ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] f6wairf ^py-hatchling@1.18.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] lxhgsum ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] slwtska ^py-setuptools-scm@7.1.0%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
[e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
[^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
[^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
[^] dw56njg ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[^] quibu6o ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
[e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
[^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
[32;1m$ set -o pipefail[0;m | |
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676, but it is owned by 0 | |
==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
==> python@3.11.6 : has external module in ['python/3.11.6'] | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-lxhgsu | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mfss4b | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-quibu6 | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-l76xnw | |
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-dw56nj | |
==> Installing nmodl-git.82376f4138e881e7a6a056838b467f0fd16e6e0c=develop-sofmlx7iijy42mvuw5rri5uoysjsaagd [24/24] | |
==> No binary for nmodl-git.82376f4138e881e7a6a056838b467f0fd16e6e0c=develop-sofmlx7iijy42mvuw5rri5uoysjsaagd found: installing from source | |
==> No patches needed for nmodl | |
==> nmodl: Executing phase: 'cmake' | |
==> nmodl: Executing phase: 'build' | |
==> nmodl: Executing phase: 'install' | |
==> nmodl: Successfully installed nmodl-git.82376f4138e881e7a6a056838b467f0fd16e6e0c=develop-sofmlx7iijy42mvuw5rri5uoysjsaagd | |
Stage: 1m 16.23s. Cmake: 4.62s. Build: 1m 9.40s. Install: 1.42s. Post-install: 0.45s. Total: 2m 32.50s | |
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/software/install_nvhpc-23.1-skylake/nmodl-git.82376f4138e881e7a6a056838b467f0fd16e6e0c_develop-sofmlx | |
[32;1m$ set +o pipefail[0;m | |
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
Determined the installed hash to be sofmlx7iijy42mvuw5rri5uoysjsaagd | |
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
[32;1m$ ccache --cleanup[0;m | |
[32;1m$ ccache --show-stats --verbose[0;m | |
Cache directory: /nvme/bbpcihpcproj12/2072309/ccache | |
Config file: /nvme/bbpcihpcproj12/2072309/ccache/ccache.conf | |
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
Stats updated: Wed Mar 6 11:01:35 2024 | |
Cacheable calls: 139 / 161 (86.34%) | |
Hits: 137 / 139 (98.56%) | |
Direct: 24 / 137 (17.52%) | |
Preprocessed: 113 / 137 (82.48%) | |
Misses: 2 / 139 ( 1.44%) | |
Uncacheable calls: 22 / 161 (13.66%) | |
Called for linking: 22 / 22 (100.0%) | |
Successful lookups: | |
Direct: 24 / 139 (17.27%) | |
Preprocessed: 113 / 115 (98.26%) | |
Local storage: | |
Cache size (GB): 0.45 / 0.51 (88.68%) | |
Files: 2751 | |
Hits: 137 / 139 (98.56%) | |
Misses: 2 / 139 ( 1.44%) | |
Reads: 278 | |
Writes: 4 | |
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
[32;1m$ fi[0;m | |
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
section_end:1709719297:step_script [0Ksection_start:1709719297:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mCreating cache build:nvhpc-2-non_protected...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=130429 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
ccache.tar: found 1 matching files and directories[0;m | |
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/30/build%3Anvhpc-2-non_protected[0;m | |
[32;1mCreated cache[0;m | |
section_end:1709719318:archive_cache [0Ksection_start:1709719318:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=130512 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
initial_environment.env: found 1 matching files and directories[0;m | |
spack-build-env.txt: found 1 matching files and directories[0;m | |
spack-build-out.txt: found 1 matching files and directories[0;m | |
spack-configure-args.txt: found 1 matching files and directories[0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1198485 responseStatus[0;m=201 Created token[0;m=64_s_wat | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=130536 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
install.xml: found 1 matching files and directories[0;m | |
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1198485 responseStatus[0;m=201 Created token[0;m=64_s_wat | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=130560 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
spack_build_info.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1198485 responseStatus[0;m=201 Created token[0;m=64_s_wat | |
section_end:1709719321:upload_artifacts_on_success [0Ksection_start:1709719321:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1709719323:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1709718755:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1709718755:resolve_secrets [0Ksection_start:1709718755:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3562213155, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nmodl | |
Pipeline ID 198676, build ref , job ID 1198483 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J1198483_PROD_P30_CP0_C1 | |
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 2072300 | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J1198483_PROD_P30_CP0_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676 --time=1:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676 --ntasks=1 --jobid=2072300 --cpus-per-task=6 --mem=30750M | |
section_end:1709718756:prepare_executor [0Ksection_start:1709718756:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r1i6n20 via bbpv1.epfl.ch... | |
section_end:1709718762:prepare_script [0Ksection_start:1709718762:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1709718763:get_sources [0Ksection_start:1709718763:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m | |
[32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
[32;1m$ cat parse_description.py[0;m | |
import os | |
import re | |
import requests | |
pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
headers={'Accept': 'application/vnd.github.v3+json'}) | |
pr_body = pr_info.json()["body"] | |
# match something like NEURON_BRANCH=foo/bar | |
# special case for SPACK_DEPLOYMENT_SUFFIX=foo/bar | |
pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+\.]+)$', re.IGNORECASE) | |
def parse_term(m): | |
ref_type = m.group(2).lower() | |
is_deployment_suffix = ref_type == 'suffix' and m.group(1).lower() == 'spack_deployment' | |
if ref_type not in {'branch', 'tag', 'ref'} and not is_deployment_suffix: return | |
print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3)) | |
if pr_body is not None: | |
for pr_body_line in pr_body.splitlines(): | |
if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
for config_term in pr_body_line[12:].split(','): | |
pat.sub(parse_term, config_term) | |
[32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m | |
[32;1m$ else[0;m | |
[32;1m$ cat input_variables.env[0;m | |
[32;1m$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m | |
[32;1m$ set -o allexport[0;m | |
[32;1m$ . input_variables.env[0;m | |
[32;1m$ set +o allexport[0;m | |
[32;1m$ unset MODULEPATH[0;m | |
[32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m | |
[32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m | |
[32;1m$ echo Preparing to clone Spack into ${PWD}[0;m | |
Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198483 | |
[32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then[0;m | |
[32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
Checking out the develop of Spack... | |
[32;1m$ module load unstable git[0;m | |
[32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
Cloning into 'spack'... | |
Updating files: 2% (329/11296) Updating files: 3% (339/11296) Updating files: 4% (452/11296) Updating files: 5% (565/11296) Updating files: 6% (678/11296) Updating files: 7% (791/11296) Updating files: 8% (904/11296) Updating files: 9% (1017/11296) Updating files: 9% (1019/11296) Updating files: 10% (1130/11296) Updating files: 11% (1243/11296) Updating files: 11% (1301/11296) Updating files: 12% (1356/11296) Updating files: 13% (1469/11296) Updating files: 14% (1582/11296) Updating files: 15% (1695/11296) Updating files: 15% (1742/11296) Updating files: 16% (1808/11296) Updating files: 17% (1921/11296) Updating files: 18% (2034/11296) Updating files: 18% (2137/11296) Updating files: 19% (2147/11296) Updating files: 20% (2260/11296) Updating files: 21% (2373/11296) Updating files: 21% (2481/11296) Updating files: 22% (2486/11296) Updating files: 23% (2599/11296) Updating files: 23% (2679/11296) Updating files: 24% (2712/11296) Updating files: 25% (2824/11296) Updating files: 26% (2937/11296) Updating files: 27% (3050/11296) Updating files: 28% (3163/11296) Updating files: 28% (3186/11296) Updating files: 29% (3276/11296) Updating files: 30% (3389/11296) Updating files: 31% (3502/11296) Updating files: 32% (3615/11296) Updating files: 32% (3683/11296) Updating files: 33% (3728/11296) Updating files: 34% (3841/11296) Updating files: 34% (3923/11296) Updating files: 35% (3954/11296) Updating files: 36% (4067/11296) Updating files: 37% (4180/11296) Updating files: 37% (4235/11296) Updating files: 38% (4293/11296) Updating files: 39% (4406/11296) Updating files: 40% (4519/11296) Updating files: 41% (4632/11296) Updating files: 41% (4661/11296) Updating files: 42% (4745/11296) Updating files: 42% (4818/11296) Updating files: 43% (4858/11296) Updating files: 44% (4971/11296) Updating files: 45% (5084/11296) Updating files: 45% (5094/11296) Updating files: 46% (5197/11296) Updating files: 47% (5310/11296) Updating files: 48% (5423/11296) Updating files: 48% (5515/11296) Updating files: 48% (5523/11296) Updating files: 49% (5536/11296) Updating files: 50% (5648/11296) Updating files: 50% (5695/11296) Updating files: 51% (5761/11296) Updating files: 51% (5861/11296) Updating files: 52% (5874/11296) Updating files: 52% (5878/11296) Updating files: 53% (5987/11296) Updating files: 54% (6100/11296) Updating files: 54% (6195/11296) Updating files: 55% (6213/11296) Updating files: 56% (6326/11296) Updating files: 57% (6439/11296) Updating files: 58% (6552/11296) Updating files: 59% (6665/11296) Updating files: 59% (6755/11296) Updating files: 60% (6778/11296) Updating files: 61% (6891/11296) Updating files: 62% (7004/11296) Updating files: 63% (7117/11296) Updating files: 64% (7230/11296) Updating files: 65% (7343/11296) Updating files: 65% (7345/11296) Updating files: 66% (7456/11296) Updating files: 67% (7569/11296) Updating files: 68% (7682/11296) Updating files: 69% (7795/11296) Updating files: 70% (7908/11296) Updating files: 71% (8021/11296) Updating files: 72% (8134/11296) Updating files: 73% (8247/11296) Updating files: 74% (8360/11296) Updating files: 75% (8472/11296) Updating files: 75% (8495/11296) Updating files: 76% (8585/11296) Updating files: 77% (8698/11296) Updating files: 78% (8811/11296) Updating files: 79% (8924/11296) Updating files: 79% (8931/11296) Updating files: 79% (8936/11296) Updating files: 79% (8972/11296) Updating files: 80% (9037/11296) Updating files: 81% (9150/11296) Updating files: 82% (9263/11296) Updating files: 82% (9359/11296) Updating files: 83% (9376/11296) Updating files: 84% (9489/11296) Updating files: 84% (9508/11296) Updating files: 85% (9602/11296) Updating files: 85% (9705/11296) Updating files: 86% (9715/11296) Updating files: 86% (9800/11296) Updating files: 87% (9828/11296) Updating files: 88% (9941/11296) Updating files: 88% (10015/11296) Updating files: 89% (10054/11296) Updating files: 90% (10167/11296) Updating files: 91% (10280/11296) Updating files: 92% (10393/11296) Updating files: 92% (10491/11296) Updating files: 93% (10506/11296) Updating files: 94% (10619/11296) Updating files: 94% (10675/11296) Updating files: 94% (10711/11296) Updating files: 95% (10732/11296) Updating files: 95% (10799/11296) Updating files: 96% (10845/11296) Updating files: 97% (10958/11296) Updating files: 97% (11030/11296) Updating files: 98% (11071/11296) Updating files: 98% (11123/11296) Updating files: 98% (11137/11296) Updating files: 99% (11184/11296) Updating files: 100% (11296/11296) Updating files: 100% (11296/11296), done. | |
[32;1m$ export SPACK_ROOT=${PWD}/spack[0;m | |
[32;1m$ export SPACK_RESOLVED_COMMIT=$(cd "${SPACK_ROOT}" && git rev-parse HEAD)[0;m | |
[32;1m$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"[0;m | |
[32;1m$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"[0;m | |
[32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m | |
[32;1m$ echo "SPACK_RESOLVED_COMMIT=${SPACK_RESOLVED_COMMIT}" >> spack_clone_variables.env[0;m | |
[32;1m$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spack_clone_variables.env[0;m | |
[32;1m$ echo "SPACK_SYSTEM_CONFIG_PATH=${SPACK_SYSTEM_CONFIG_PATH}" >> spack_clone_variables.env[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676/J1198483_local_config) | |
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = git@bbpgitlab.epfl.ch: | |
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
[32;1m$ env -0 | sed -nz '/^CUSTOM_ENV_/d;/^[^=]\+_\(BRANCH\|COMMIT\|TAG\)=.\+/p' | xargs -0t spack ${SPACK_EXTRA_FLAGS} configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED ${SPACK_SETUP_IGNORE_PACKAGE_VARIABLES} --write-commit-file=commit-mapping.env[0;m | |
spack configure-pipeline --ignore-packages CI_BUILD CI_COMMIT CI_DEFAULT GITLAB_PIPELINES SPACK SPACK_RESOLVED CVF BLUECONFIGS --write-commit-file=commit-mapping.env CI_COMMIT_BRANCH=jelic/cibw_dev NMODL_COMMIT=82376f4138e881e7a6a056838b467f0fd16e6e0c SPACK_RESOLVED_COMMIT=2c0ea5fa1d30f6407c45786274dc1fc008079072 NEURON_BRANCH=master LIBSONATA_REPORT_BRANCH=master SPACK_BRANCH=develop CI_DEFAULT_BRANCH=master CVF_BRANCH=main BLUECONFIGS_BRANCH=main | |
==> CI_COMMIT: ignoring CI_COMMIT_BRANCH=jelic/cibw_dev | |
==> SPACK_RESOLVED: ignoring SPACK_RESOLVED_COMMIT=2c0ea5fa1d30f6407c45786274dc1fc008079072 | |
==> SPACK: ignoring SPACK_BRANCH=develop | |
==> CI_DEFAULT: ignoring CI_DEFAULT_BRANCH=master | |
==> CVF: ignoring CVF_BRANCH=main | |
==> BLUECONFIGS: ignoring BLUECONFIGS_BRANCH=main | |
==> neuron: resolved branch master to 8afc9decf8650b4f5197f58c2535590d8c21bc31 | |
==> libsonata-report: resolved branch master to ea01d1df3350c3529f7a97db97d5c51272a08e8e | |
==> adding config: packages:nmodl:require: '@git.82376f4138e881e7a6a056838b467f0fd16e6e0c=develop' | |
==> adding config: packages:neuron:require: '@git.8afc9decf8650b4f5197f58c2535590d8c21bc31=develop' | |
==> adding config: packages:libsonata-report:require: '@git.ea01d1df3350c3529f7a97db97d5c51272a08e8e=develop' | |
[32;1m$ (cd "${SPACK_ROOT}" && git diff)[0;m | |
[32;1m$ cat commit-mapping.env[0;m | |
NMODL_COMMIT=82376f4138e881e7a6a056838b467f0fd16e6e0c | |
NEURON_COMMIT=8afc9decf8650b4f5197f58c2535590d8c21bc31 | |
LIBSONATA_REPORT_COMMIT=ea01d1df3350c3529f7a97db97d5c51272a08e8e | |
[32;1m$ echo "SPACK_BRANCH=${SPACK_BRANCH}" >> commit-mapping.env[0;m | |
[32;1m$ echo "SPACK_DEPLOYMENT_SUFFIX=${SPACK_DEPLOYMENT_SUFFIX}" >> commit-mapping.env[0;m | |
[32;1m$ cat commit-mapping.env >> spack_clone_variables.env[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -IL ninja[0;m | |
==> Warning: Expected user 904556 to own /nvme/bbpcihpcproj12, but it is owned by 0 | |
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.18.0-afv7arjarb7nzmlh7c5slkfxykybuqce.spec.json | |
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64/gcc-10.2.1/patchelf-0.18.0/linux-centos7-x86_64-gcc-10.2.1-patchelf-0.18.0-afv7arjarb7nzmlh7c5slkfxykybuqce.spack | |
==> Installing "patchelf@=0.18.0%gcc@=10.2.1 ldflags="-static-libstdc++ -static-libgcc" build_system=autotools arch=linux-centos7-x86_64" from a buildcache | |
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-t4yf34cuvquqp5xd66zybmcfyhwbdlsf.spec.json | |
==> Fetching https://mirror.spack.io/bootstrap/github-actions/v0.5/build_cache/linux-centos7-x86_64/gcc-10.2.1/clingo-bootstrap-spack/linux-centos7-x86_64-gcc-10.2.1-clingo-bootstrap-spack-t4yf34cuvquqp5xd66zybmcfyhwbdlsf.spack | |
==> Installing "clingo-bootstrap@=spack%gcc@=10.2.1~docs+ipo+optimized+python+static_libstdcpp build_system=cmake build_type=Release generator=make patches=bebb819,ec99431 arch=linux-centos7-x86_64" from a buildcache | |
Input spec | |
-------------------------------- | |
- ninja | |
Concretized | |
-------------------------------- | |
[e] omn6mm4a3zsbpbkptvdwxs6kkrh6yafw ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
[32;1m$ echo "SPACK_SETUP_COMMIT_MAPPING_URL=${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/jobs/${CI_JOB_ID}/artifacts/commit-mapping.env" >> spack_clone_variables.env[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config --scope site add "config:ccache:true"[0;m | |
[32;1m$ echo "SPACK_USE_CCACHE=true" >> spack_clone_variables.env[0;m | |
[32;1m$ echo "CVF_BRANCH=${CVF_BRANCH}" >> spack_clone_variables.env[0;m | |
[32;1m$ echo "BLUECONFIGS_BRANCH=${BLUECONFIGS_BRANCH}" >> spack_clone_variables.env[0;m | |
section_end:1709718923:step_script [0Ksection_start:1709718923:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=166334 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
commit-mapping.env: found 1 matching files and directories[0;m | |
input_variables.env: found 1 matching files and directories[0;m | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1198483 responseStatus[0;m=201 Created token[0;m=64_9Z8Xe | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=166357 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
spack_clone_variables.env: found 1 matching files and directories[0;m | |
Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1198483 responseStatus[0;m=201 Created token[0;m=64_9Z8Xe | |
section_end:1709718925:upload_artifacts_on_success [0Ksection_start:1709718925:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1709718926:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1709719266:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1709719266:resolve_secrets [0Ksection_start:1709719266:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1795968647, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nmodl | |
Pipeline ID 198676, build ref , job ID 1198486 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J1198486_PROD_P30_CP0_C1 | |
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 2072321 | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=1 --mem=30750M --job-name=GL_J1198486_PROD_P30_CP0_C1 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676 --time=1:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676 --ntasks=1 --jobid=2072321 --cpus-per-task=1 --mem=30750M | |
section_end:1709719267:prepare_executor [0Ksection_start:1709719267:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r1i6n30 via bbpv1.epfl.ch... | |
section_end:1709719280:prepare_script [0Ksection_start:1709719280:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1709719281:get_sources [0Ksection_start:1709719281:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
Using git from spack modules | |
[32;1mDownloading artifacts for build:intel (1198484)...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=229058 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading artifacts from coordinator... ok [0;m id[0;m=1198484 responseStatus[0;m=200 OK token[0;m=64_By7wC | |
section_end:1709719284:download_artifacts [0Ksection_start:1709719284:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
[32;1m$ i_am_a_failure=0[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} build-env ${SPACK_FULL_SPEC} -- ctest --no-tests=error --output-on-failure -T Test || i_am_a_failure=1[0;m | |
Site: r1i6n20 | |
Build name: Linux-icpx | |
Create new tag: 20240306-1002 - Experimental | |
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198484/spack-build/spack-stage-nmodl-git.82376f4138e881e7a6a056838b467f0fd16e6e0c_develop-izyg6klxbhinaykng2frz3j5ggoqqx3l/spack-build-izyg6kl | |
Start 1: testcodegen/Scenario: unusual / failing mod files | |
1/111 Test #1: testcodegen/Scenario: unusual / failing mod files ................................................... Passed 0.17 sec | |
Start 2: testcodegen/Scenario: Check global variable setup | |
2/111 Test #2: testcodegen/Scenario: Check global variable setup ................................................... Passed 0.21 sec | |
Start 3: testcodegen/Scenario: C codegen utility functions | |
3/111 Test #3: testcodegen/Scenario: C codegen utility functions ................................................... Passed 0.24 sec | |
Start 4: testcodegen/Scenario: Check instance variable definition order | |
4/111 Test #4: testcodegen/Scenario: Check instance variable definition order ...................................... Passed 0.14 sec | |
Start 5: testcodegen/Scenario: Check parameter constness with VERBATIM block | |
5/111 Test #5: testcodegen/Scenario: Check parameter constness with VERBATIM block ................................. Passed 0.17 sec | |
Start 6: testcodegen/Scenario: Check NEURON globals are added to the instance struct on demand | |
6/111 Test #6: testcodegen/Scenario: Check NEURON globals are added to the instance struct on demand ............... Passed 0.17 sec | |
Start 7: testcodegen/Scenario: Check code generation for TABLE statements | |
7/111 Test #7: testcodegen/Scenario: Check code generation for TABLE statements .................................... Passed 0.18 sec | |
Start 8: testcodegen/Scenario: Check that BEFORE/AFTER block are well generated | |
8/111 Test #8: testcodegen/Scenario: Check that BEFORE/AFTER block are well generated .............................. Passed 0.21 sec | |
Start 9: testcodegen/Scenario: Check CONSTANT variables are added to global variable structure | |
9/111 Test #9: testcodegen/Scenario: Check CONSTANT variables are added to global variable structure ............... Passed 0.19 sec | |
Start 10: testcodegen/Scenario: Check code generation for FUNCTION_TABLE block | |
10/111 Test #10: testcodegen/Scenario: Check code generation for FUNCTION_TABLE block ................................ Passed 0.09 sec | |
Start 11: testcodegen/Scenario: Check that loops are well generated | |
11/111 Test #11: testcodegen/Scenario: Check that loops are well generated ........................................... Passed 0.09 sec | |
Start 12: testcodegen/Scenario: Check that top verbatim blocks are well generated | |
12/111 Test #12: testcodegen/Scenario: Check that top verbatim blocks are well generated ............................. Passed 0.19 sec | |
Start 13: testcodegen/Scenario: Check that codegen generate event functions well | |
13/111 Test #13: testcodegen/Scenario: Check that codegen generate event functions well .............................. Passed 0.18 sec | |
Start 14: testcodegen/Scenario: Some tests on derivimplicit | |
14/111 Test #14: testcodegen/Scenario: Some tests on derivimplicit ................................................... Passed 0.13 sec | |
Start 15: testcodegen/Scenario: Some tests on euler solver | |
15/111 Test #15: testcodegen/Scenario: Some tests on euler solver .................................................... Passed 0.17 sec | |
Start 16: testcodegen/Scenario: Check codegen for MUTEX and PROTECT | |
16/111 Test #16: testcodegen/Scenario: Check codegen for MUTEX and PROTECT ........................................... Passed 0.25 sec | |
Start 17: testcodegen/Scenario: Array STATE variable | |
17/111 Test #17: testcodegen/Scenario: Array STATE variable .......................................................... Passed 0.24 sec | |
Start 18: testcodegen/Scenario: Check whether PROCEDURE and FUNCTION need setdata call | |
18/111 Test #18: testcodegen/Scenario: Check whether PROCEDURE and FUNCTION need setdata call ........................ Passed 0.22 sec | |
Start 19: testcodegen/Scenario: Adding a variable for a table inside a function | |
19/111 Test #19: testcodegen/Scenario: Adding a variable for a table inside a function ............................... Passed 0.14 sec | |
Start 20: testcodegen/Scenario: Uncompatible constructs should failed | |
20/111 Test #20: testcodegen/Scenario: Uncompatible constructs should failed ......................................... Passed 0.18 sec | |
Start 21: testmodtoken/NMODL Lexer returning valid ModToken object | |
21/111 Test #21: testmodtoken/NMODL Lexer returning valid ModToken object ............................................ Passed 0.09 sec | |
Start 22: testmodtoken/Addition of two ModToken objects | |
22/111 Test #22: testmodtoken/Addition of two ModToken objects ....................................................... Passed 0.05 sec | |
Start 23: testlexer/NMODL Lexer returning valid token types | |
23/111 Test #23: testlexer/NMODL Lexer returning valid token types ................................................... Passed 0.09 sec | |
Start 24: testparser/Scenario: NMODL can accept CR as return char for one line comment | |
24/111 Test #24: testparser/Scenario: NMODL can accept CR as return char for one line comment ........................ Passed 0.14 sec | |
Start 25: testparser/Scenario: NMODL can define macros using DEFINE keyword | |
25/111 Test #25: testparser/Scenario: NMODL can define macros using DEFINE keyword ................................... Passed 0.11 sec | |
Start 26: testparser/Scenario: Macros can be used anywhere in the mod file | |
26/111 Test #26: testparser/Scenario: Macros can be used anywhere in the mod file .................................... Passed 0.07 sec | |
Start 27: testparser/Scenario: NMODL parser accepts empty unit specification | |
27/111 Test #27: testparser/Scenario: NMODL parser accepts empty unit specification .................................. Passed 0.07 sec | |
Start 28: testparser/Scenario: NMODL parser running number of valid NMODL constructs | |
28/111 Test #28: testparser/Scenario: NMODL parser running number of valid NMODL constructs .......................... Passed 0.10 sec | |
Start 29: testparser/Scenario: NMODL parser running number of invalid NMODL constructs | |
29/111 Test #29: testparser/Scenario: NMODL parser running number of invalid NMODL constructs ........................ Passed 0.09 sec | |
Start 30: testparser/Scenario: Check that the parser doesn't crash when passing invalid INCLUDE constructs | |
30/111 Test #30: testparser/Scenario: Check that the parser doesn't crash when passing invalid INCLUDE constructs .... Passed 0.05 sec | |
Start 31: testparser/Scenario: NEURON block can add CURIE information | |
31/111 Test #31: testparser/Scenario: NEURON block can add CURIE information ......................................... Passed 0.08 sec | |
Start 32: testparser/Scenario: Check parents in valid NMODL constructs | |
32/111 Test #32: testparser/Scenario: Check parents in valid NMODL constructs ........................................ Passed 0.43 sec | |
Start 33: testparser/Scenario: Legacy differential equation solver | |
33/111 Test #33: testparser/Scenario: Legacy differential equation solver ............................................ Passed 0.04 sec | |
Start 34: testparser/Scenario: Check if a NEURON block is parsed with correct location info in its token | |
34/111 Test #34: testparser/Scenario: Check if a NEURON block is parsed with correct location info in its token ...... Passed 0.04 sec | |
Start 35: testvisitor/Scenario: AfterCVodeToCnexpVisitor changes after_cvode solver method to cnexp | |
35/111 Test #35: testvisitor/Scenario: AfterCVodeToCnexpVisitor changes after_cvode solver method to cnexp ........... Passed 0.06 sec | |
Start 36: testvisitor/Scenario: Perform constant folder on NMODL constructs | |
36/111 Test #36: testvisitor/Scenario: Perform constant folder on NMODL constructs ................................... Passed 0.06 sec | |
Start 37: testvisitor/Scenario: Perform DefUse analysis on NMODL constructs | |
37/111 Test #37: testvisitor/Scenario: Perform DefUse analysis on NMODL constructs ................................... Passed 0.07 sec | |
Start 38: testvisitor/Scenario: GLOBAL to RANGE variable transformer | |
38/111 Test #38: testvisitor/Scenario: GLOBAL to RANGE variable transformer .......................................... Passed 0.06 sec | |
Start 39: testvisitor/Scenario: Check insertion of implicit arguments | |
39/111 Test #39: testvisitor/Scenario: Check insertion of implicit arguments ......................................... Passed 0.07 sec | |
Start 40: testvisitor/Scenario: Inlining of external procedure calls | |
40/111 Test #40: testvisitor/Scenario: Inlining of external procedure calls .......................................... Passed 0.07 sec | |
Start 41: testvisitor/Scenario: Inlining of function call as argument in external function | |
41/111 Test #41: testvisitor/Scenario: Inlining of function call as argument in external function .................... Passed 0.08 sec | |
Start 42: testvisitor/Scenario: Inlining of simple, one level procedure call | |
42/111 Test #42: testvisitor/Scenario: Inlining of simple, one level procedure call .................................. Passed 0.08 sec | |
Start 43: testvisitor/Scenario: Inlining of nested procedure call | |
43/111 Test #43: testvisitor/Scenario: Inlining of nested procedure call ............................................. Passed 0.08 sec | |
Start 44: testvisitor/Scenario: Inline function call in procedure | |
44/111 Test #44: testvisitor/Scenario: Inline function call in procedure ............................................. Passed 0.08 sec | |
Start 45: testvisitor/Scenario: Inling function call within conditional statement | |
45/111 Test #45: testvisitor/Scenario: Inling function call within conditional statement ............................. Passed 0.09 sec | |
Start 46: testvisitor/Scenario: Inline multiple function calls in same statement | |
46/111 Test #46: testvisitor/Scenario: Inline multiple function calls in same statement .............................. Passed 0.11 sec | |
Start 47: testvisitor/Scenario: Inline nested function calls withing arguments | |
47/111 Test #47: testvisitor/Scenario: Inline nested function calls withing arguments ................................ Passed 0.09 sec | |
Start 48: testvisitor/Scenario: Inline function call in non-binary expression | |
48/111 Test #48: testvisitor/Scenario: Inline function call in non-binary expression ................................. Passed 0.14 sec | |
Start 49: testvisitor/Scenario: Inline function call as standalone expression | |
49/111 Test #49: testvisitor/Scenario: Inline function call as standalone expression ................................. Passed 0.36 sec | |
Start 50: testvisitor/Scenario: Inline procedure call as standalone statement as well as part of expression | |
50/111 Test #50: testvisitor/Scenario: Inline procedure call as standalone statement as well as part of expression ... Passed 0.28 sec | |
Start 51: testvisitor/Scenario: Inlining pass handles local-global name conflict | |
51/111 Test #51: testvisitor/Scenario: Inlining pass handles local-global name conflict .............................. Passed 0.32 sec | |
Start 52: testvisitor/Scenario: Trying to inline a function with VERBATIM block | |
52/111 Test #52: testvisitor/Scenario: Trying to inline a function with VERBATIM block ............................... Passed 0.28 sec | |
Start 53: testvisitor/Convert NMODL to AST to JSON form using JSONVisitor | |
53/111 Test #53: testvisitor/Convert NMODL to AST to JSON form using JSONVisitor ..................................... Passed 0.27 sec | |
Start 54: testvisitor/Scenario: Convert KINETIC to DERIVATIVE using KineticBlock visitor | |
54/111 Test #54: testvisitor/Scenario: Convert KINETIC to DERIVATIVE using KineticBlock visitor ...................... Passed 0.25 sec | |
Start 55: testvisitor/Scenario: Localizer test with single global block | |
55/111 Test #55: testvisitor/Scenario: Localizer test with single global block ....................................... Passed 0.20 sec | |
Start 56: testvisitor/Scenario: Localizer test with use of verbatim block | |
56/111 Test #56: testvisitor/Scenario: Localizer test with use of verbatim block ..................................... Passed 0.11 sec | |
Start 57: testvisitor/Scenario: Localizer test with multiple global blocks | |
57/111 Test #57: testvisitor/Scenario: Localizer test with multiple global blocks .................................... Passed 0.10 sec | |
Start 58: testvisitor/Scenario: LocalVarRenameVisitor works with InlineVisitor | |
58/111 Test #58: testvisitor/Scenario: LocalVarRenameVisitor works with InlineVisitor ................................ Passed 0.09 sec | |
Start 59: testvisitor/Scenario: LOCAL to ASSIGNED variable transformer | |
59/111 Test #59: testvisitor/Scenario: LOCAL to ASSIGNED variable transformer ........................................ Passed 0.10 sec | |
Start 60: testvisitor/Scenario: Searching for ast nodes using AstLookupVisitor | |
60/111 Test #60: testvisitor/Scenario: Searching for ast nodes using AstLookupVisitor ................................ Passed 0.07 sec | |
Start 61: testvisitor/Scenario: Perform loop unrolling of FROM construct | |
61/111 Test #61: testvisitor/Scenario: Perform loop unrolling of FROM construct ...................................... Passed 0.08 sec | |
Start 62: testvisitor/Scenario: Running visitor passes multiple times | |
62/111 Test #62: testvisitor/Scenario: Running visitor passes multiple times ......................................... Passed 0.07 sec | |
Start 63: testvisitor/Scenario: Sympy specific AST to NMODL conversion | |
63/111 Test #63: testvisitor/Scenario: Sympy specific AST to NMODL conversion ........................................ Passed 0.08 sec | |
Start 64: testvisitor/Scenario: NeuronSolveVisitor visitor solves different ODE types | |
64/111 Test #64: testvisitor/Scenario: NeuronSolveVisitor visitor solves different ODE types ......................... Passed 0.20 sec | |
Start 65: testvisitor/Scenario: Convert AST back to NMODL form | |
65/111 Test #65: testvisitor/Scenario: Convert AST back to NMODL form ................................................ Passed 0.23 sec | |
Start 66: testvisitor/Scenario: Symbol table generation with Perf stat visitor | |
66/111 Test #66: testvisitor/Scenario: Symbol table generation with Perf stat visitor ................................ Passed 0.20 sec | |
Start 67: testvisitor/Scenario: Renaming any variable in mod file with RenameVisitor | |
67/111 Test #67: testvisitor/Scenario: Renaming any variable in mod file with RenameVisitor .......................... Passed 0.26 sec | |
Start 68: testvisitor/Scenario: Renaming with presence of local and global variables in same block | |
68/111 Test #68: testvisitor/Scenario: Renaming with presence of local and global variables in same block ............ Passed 0.23 sec | |
Start 69: testvisitor/Scenario: Renaming in the absence of global blocks | |
69/111 Test #69: testvisitor/Scenario: Renaming in the absence of global blocks ...................................... Passed 0.24 sec | |
Start 70: testvisitor/Scenario: Variable renaming in nested blocks | |
70/111 Test #70: testvisitor/Scenario: Variable renaming in nested blocks ............................................ Passed 0.15 sec | |
Start 71: testvisitor/Scenario: Renaming in presence of local variable in verbatim block | |
71/111 Test #71: testvisitor/Scenario: Renaming in presence of local variable in verbatim block ...................... Passed 0.26 sec | |
Start 72: testvisitor/Scenario: TABLE stmt | |
72/111 Test #72: testvisitor/Scenario: TABLE stmt .................................................................... Passed 0.21 sec | |
Start 73: testvisitor/Scenario: Destructor block | |
73/111 Test #73: testvisitor/Scenario: Destructor block .............................................................. Passed 0.20 sec | |
Start 74: testvisitor/Scenario: Ion variable in CONSTANT block | |
74/111 Test #74: testvisitor/Scenario: Ion variable in CONSTANT block ................................................ Passed 0.13 sec | |
Start 75: testvisitor/Scenario: INDEPENDENT block | |
75/111 Test #75: testvisitor/Scenario: INDEPENDENT block ............................................................. Passed 0.13 sec | |
Start 76: testvisitor/Scenario: FUNCTION_TABLE block | |
76/111 Test #76: testvisitor/Scenario: FUNCTION_TABLE block .......................................................... Passed 0.16 sec | |
Start 77: testvisitor/Scenario: At most one DERIVATIVE block | |
77/111 Test #77: testvisitor/Scenario: At most one DERIVATIVE block .................................................. Passed 0.13 sec | |
Start 78: testvisitor/Scenario: RANDOM Construct | |
78/111 Test #78: testvisitor/Scenario: RANDOM Construct .............................................................. Passed 0.09 sec | |
Start 79: testvisitor/Solve ODEs using legacy NeuronSolveVisitor | |
79/111 Test #79: testvisitor/Solve ODEs using legacy NeuronSolveVisitor .............................................. Passed 0.10 sec | |
Start 80: testvisitor/Scenario: Solving ODEs with STEADYSTATE solve method | |
80/111 Test #80: testvisitor/Scenario: Solving ODEs with STEADYSTATE solve method .................................... Passed 0.11 sec | |
Start 81: testvisitor/Scenario: Addition of CONDUCTANCE using SympyConductance visitor | |
81/111 Test #81: testvisitor/Scenario: Addition of CONDUCTANCE using SympyConductance visitor ........................ Passed 51.21 sec | |
Start 82: testvisitor/Scenario: Check compare_blocks in sympy unit tests | |
82/111 Test #82: testvisitor/Scenario: Check compare_blocks in sympy unit tests ...................................... Passed 0.88 sec | |
Start 83: testvisitor/Scenario: Check local vars name-clash prevention | |
83/111 Test #83: testvisitor/Scenario: Check local vars name-clash prevention ........................................ Passed 1.03 sec | |
Start 84: testvisitor/Scenario: Solve ODEs with cnexp or euler method using SympySolverVisitor | |
84/111 Test #84: testvisitor/Scenario: Solve ODEs with cnexp or euler method using SympySolverVisitor ................ Passed 8.00 sec | |
Start 85: testvisitor/Scenario: Solve ODEs with derivimplicit method using SympySolverVisitor | |
85/111 Test #85: testvisitor/Scenario: Solve ODEs with derivimplicit method using SympySolverVisitor ................. Passed 2.52 sec | |
Start 86: testvisitor/Scenario: LINEAR solve block (SympySolver Visitor) | |
86/111 Test #86: testvisitor/Scenario: LINEAR solve block (SympySolver Visitor) ...................................... Passed 1.95 sec | |
Start 87: testvisitor/Scenario: Solve NONLINEAR block using SympySolver Visitor | |
87/111 Test #87: testvisitor/Scenario: Solve NONLINEAR block using SympySolver Visitor ............................... Passed 1.00 sec | |
Start 88: testvisitor/Scenario: Solve KINETIC block using SympySolver Visitor | |
88/111 Test #88: testvisitor/Scenario: Solve KINETIC block using SympySolver Visitor ................................. Passed 1.11 sec | |
Start 89: testvisitor/Scenario: Code generation for EigenNewtonSolver | |
89/111 Test #89: testvisitor/Scenario: Code generation for EigenNewtonSolver ......................................... Passed 1.06 sec | |
Start 90: testvisitor/Scenario: Parse UNITS block of mod files using Units Visitor | |
90/111 Test #90: testvisitor/Scenario: Parse UNITS block of mod files using Units Visitor ............................ Passed 0.06 sec | |
Start 91: testvisitor/Scenario: Searching for variable name using VarUsageVisitor | |
91/111 Test #91: testvisitor/Scenario: Searching for variable name using VarUsageVisitor ............................. Passed 0.05 sec | |
Start 92: testvisitor/Parse VERBATIM block using Verbatim Visitor | |
92/111 Test #92: testvisitor/Parse VERBATIM block using Verbatim Visitor ............................................. Passed 0.05 sec | |
Start 93: testvisitor/Scenario: Get node name with index TestVisitor | |
93/111 Test #93: testvisitor/Scenario: Get node name with index TestVisitor .......................................... Passed 0.05 sec | |
Start 94: testprinter/JSON printer converting object to string form | |
94/111 Test #94: testprinter/JSON printer converting object to string form ........................................... Passed 0.02 sec | |
Start 95: testsymtab/Scenario: Symbol properties can be added and converted to string | |
95/111 Test #95: testsymtab/Scenario: Symbol properties can be added and converted to string ......................... Passed 0.02 sec | |
Start 96: testsymtab/Scenario: Multiple properties can be added to Symbol | |
96/111 Test #96: testsymtab/Scenario: Multiple properties can be added to Symbol ..................................... Passed 0.02 sec | |
Start 97: testsymtab/Scenario: Symbol table allows operations like insert, lookup | |
97/111 Test #97: testsymtab/Scenario: Symbol table allows operations like insert, lookup ............................. Passed 0.02 sec | |
Start 98: testsymtab/Scenario: Global symbol table (ModelSymbol) allows scope based operations | |
98/111 Test #98: testsymtab/Scenario: Global symbol table (ModelSymbol) allows scope based operations ................ Passed 0.02 sec | |
Start 99: testsymtab/Scenario: Symbol class allows manipulation | |
99/111 Test #99: testsymtab/Scenario: Symbol class allows manipulation ............................................... Passed 0.02 sec | |
Start 100: testnewton/Scenario: Non-linear system to solve with Newton Numerical Diff Solver | |
100/111 Test #100: testnewton/Scenario: Non-linear system to solve with Newton Numerical Diff Solver ................... Passed 0.02 sec | |
Start 101: testnewton/Scenario: Non-linear system to solve with Newton Solver | |
101/111 Test #101: testnewton/Scenario: Non-linear system to solve with Newton Solver .................................. Passed 0.02 sec | |
Start 102: testcrout/Scenario: Compare Crout solver with Eigen | |
102/111 Test #102: testcrout/Scenario: Compare Crout solver with Eigen ................................................. Passed 0.13 sec | |
Start 103: testunitlexer/Unit Lexer tests for valid tokens | |
103/111 Test #103: testunitlexer/Unit Lexer tests for valid tokens ..................................................... Passed 0.02 sec | |
Start 104: testunitparser/Scenario: Unit parser accepting valid units definition | |
104/111 Test #104: testunitparser/Scenario: Unit parser accepting valid units definition ............................... Passed 0.03 sec | |
Start 105: testunitparser/Scenario: Unit parser accepting dependent/nested units definition | |
105/111 Test #105: testunitparser/Scenario: Unit parser accepting dependent/nested units definition .................... Passed 0.02 sec | |
Start 106: Ode | |
106/111 Test #106: Ode ................................................................................................. Passed 2.13 sec | |
Start 107: Pybind | |
107/111 Test #107: Pybind .............................................................................................. Passed 1.00 sec | |
Start 108: cabpump.mod | |
108/111 Test #108: cabpump.mod ......................................................................................... Passed 0.07 sec | |
Start 109: ican.mod | |
109/111 Test #109: ican.mod ............................................................................................ Passed 0.06 sec | |
Start 110: test_functor.mod | |
110/111 Test #110: test_functor.mod .................................................................................... Passed 0.06 sec | |
Start 111: watch_test.mod | |
111/111 Test #111: watch_test.mod ...................................................................................... Passed 0.06 sec | |
100% tests passed, 0 tests failed out of 111 | |
Total Test time (real) = 84.82 sec | |
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
[32;1m$ module load unstable unit-test-translator[0;m | |
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
[32;1m$ exit ${i_am_a_failure}[0;m | |
section_end:1709719420:step_script [0Ksection_start:1709719420:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=230888 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
initial_environment.env: found 1 matching files and directories[0;m | |
Testing/: found 7 matching files and directories [0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1198486 responseStatus[0;m=201 Created token[0;m=64_By7wC | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=230903 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
ctest.xml: found 1 matching files and directories [0;m | |
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1198486 responseStatus[0;m=201 Created token[0;m=64_By7wC | |
section_end:1709719423:upload_artifacts_on_success [0Ksection_start:1709719423:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1709719425:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
[0K on BB5 map runner pnPo3yJy[0;m | |
section_start:1709719328:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
section_end:1709719328:resolve_secrets [0Ksection_start:1709719328:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2555920982, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
Runner ID 29, project root hpc, project name nmodl | |
Pipeline ID 198676, build ref , job ID 1198487 | |
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676, optional exclusive flag , optional cpus per task flag --cpus-per-task=1, optional qos flag , optional reservation flag | |
A slurm job will be created with name GL_J1198487_PROD_P30_CP1_C2 | |
Job parameters: memory=30750M, cpus_per_task=1, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
Not executing the chown -R | |
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
Submitted batch job 2072324 | |
job state: R | |
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=1 --mem=30750M --job-name=GL_J1198487_PROD_P30_CP1_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676 --time=1:00:00 --wrap="sleep infinity" | |
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P198676 --ntasks=1 --jobid=2072324 --cpus-per-task=1 --mem=30750M | |
section_end:1709719330:prepare_executor [0Ksection_start:1709719330:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
Using git from spack modules | |
Running on r1i6n20 via bbpv1.epfl.ch... | |
section_end:1709719335:prepare_script [0Ksection_start:1709719335:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
Using git from spack modules | |
[32;1mSkipping Git repository setup[0;m | |
[32;1mSkipping Git checkout[0;m | |
[32;1mSkipping Git submodules setup[0;m | |
section_end:1709719336:get_sources [0Ksection_start:1709719336:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
Using git from spack modules | |
[32;1mDownloading artifacts for build:nvhpc (1198485)...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=170600 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
Downloading artifacts from coordinator... ok [0;m id[0;m=1198485 responseStatus[0;m=200 OK token[0;m=64_zZ2BV | |
section_end:1709719337:download_artifacts [0Ksection_start:1709719337:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
Using git from spack modules | |
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
[32;1m$ export CTEST_PARALLEL_LEVEL=${SLURM_TASKS_PER_NODE}[0;m | |
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
[32;1m$ cd ${SPACK_BUILD_DIR}[0;m | |
[32;1m$ export BOOST_TEST_COLOR_OUTPUT=no[0;m | |
[32;1m$ i_am_a_failure=0[0;m | |
[32;1m$ spack ${SPACK_EXTRA_FLAGS} build-env ${SPACK_FULL_SPEC} -- ctest --no-tests=error --output-on-failure -T Test || i_am_a_failure=1[0;m | |
Site: r1i4n20 | |
Build name: Linux-nvc++ | |
Create new tag: 20240306-1002 - Experimental | |
Test project /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P198676/J1198485/spack-build/spack-stage-nmodl-git.82376f4138e881e7a6a056838b467f0fd16e6e0c_develop-sofmlx7iijy42mvuw5rri5uoysjsaagd/spack-build-sofmlx7 | |
Start 1: testcodegen/Scenario: unusual / failing mod files | |
1/111 Test #1: testcodegen/Scenario: unusual / failing mod files ................................................... Passed 0.05 sec | |
Start 2: testcodegen/Scenario: Check global variable setup | |
2/111 Test #2: testcodegen/Scenario: Check global variable setup ................................................... Passed 0.04 sec | |
Start 3: testcodegen/Scenario: C codegen utility functions | |
3/111 Test #3: testcodegen/Scenario: C codegen utility functions ................................................... Passed 0.04 sec | |
Start 4: testcodegen/Scenario: Check instance variable definition order | |
4/111 Test #4: testcodegen/Scenario: Check instance variable definition order ...................................... Passed 0.04 sec | |
Start 5: testcodegen/Scenario: Check parameter constness with VERBATIM block | |
5/111 Test #5: testcodegen/Scenario: Check parameter constness with VERBATIM block ................................. Passed 0.04 sec | |
Start 6: testcodegen/Scenario: Check NEURON globals are added to the instance struct on demand | |
6/111 Test #6: testcodegen/Scenario: Check NEURON globals are added to the instance struct on demand ............... Passed 0.04 sec | |
Start 7: testcodegen/Scenario: Check code generation for TABLE statements | |
7/111 Test #7: testcodegen/Scenario: Check code generation for TABLE statements .................................... Passed 0.05 sec | |
Start 8: testcodegen/Scenario: Check that BEFORE/AFTER block are well generated | |
8/111 Test #8: testcodegen/Scenario: Check that BEFORE/AFTER block are well generated .............................. Passed 0.04 sec | |
Start 9: testcodegen/Scenario: Check CONSTANT variables are added to global variable structure | |
9/111 Test #9: testcodegen/Scenario: Check CONSTANT variables are added to global variable structure ............... Passed 0.04 sec | |
Start 10: testcodegen/Scenario: Check code generation for FUNCTION_TABLE block | |
10/111 Test #10: testcodegen/Scenario: Check code generation for FUNCTION_TABLE block ................................ Passed 0.04 sec | |
Start 11: testcodegen/Scenario: Check that loops are well generated | |
11/111 Test #11: testcodegen/Scenario: Check that loops are well generated ........................................... Passed 0.04 sec | |
Start 12: testcodegen/Scenario: Check that top verbatim blocks are well generated | |
12/111 Test #12: testcodegen/Scenario: Check that top verbatim blocks are well generated ............................. Passed 0.04 sec | |
Start 13: testcodegen/Scenario: Check that codegen generate event functions well | |
13/111 Test #13: testcodegen/Scenario: Check that codegen generate event functions well .............................. Passed 0.05 sec | |
Start 14: testcodegen/Scenario: Some tests on derivimplicit | |
14/111 Test #14: testcodegen/Scenario: Some tests on derivimplicit ................................................... Passed 0.04 sec | |
Start 15: testcodegen/Scenario: Some tests on euler solver | |
15/111 Test #15: testcodegen/Scenario: Some tests on euler solver .................................................... Passed 0.04 sec | |
Start 16: testcodegen/Scenario: Check codegen for MUTEX and PROTECT | |
16/111 Test #16: testcodegen/Scenario: Check codegen for MUTEX and PROTECT ........................................... Passed 0.04 sec | |
Start 17: testcodegen/Scenario: Array STATE variable | |
17/111 Test #17: testcodegen/Scenario: Array STATE variable .......................................................... Passed 0.04 sec | |
Start 18: testcodegen/Scenario: Check whether PROCEDURE and FUNCTION need setdata call | |
18/111 Test #18: testcodegen/Scenario: Check whether PROCEDURE and FUNCTION need setdata call ........................ Passed 0.04 sec | |
Start 19: testcodegen/Scenario: Adding a variable for a table inside a function | |
19/111 Test #19: testcodegen/Scenario: Adding a variable for a table inside a function ............................... Passed 0.04 sec | |
Start 20: testcodegen/Scenario: Uncompatible constructs should failed | |
20/111 Test #20: testcodegen/Scenario: Uncompatible constructs should failed ......................................... Passed 0.04 sec | |
Start 21: testmodtoken/NMODL Lexer returning valid ModToken object | |
21/111 Test #21: testmodtoken/NMODL Lexer returning valid ModToken object ............................................ Passed 0.01 sec | |
Start 22: testmodtoken/Addition of two ModToken objects | |
22/111 Test #22: testmodtoken/Addition of two ModToken objects ....................................................... Passed 0.01 sec | |
Start 23: testlexer/NMODL Lexer returning valid token types | |
23/111 Test #23: testlexer/NMODL Lexer returning valid token types ................................................... Passed 0.01 sec | |
Start 24: testparser/Scenario: NMODL can accept CR as return char for one line comment | |
24/111 Test #24: testparser/Scenario: NMODL can accept CR as return char for one line comment ........................ Passed 0.02 sec | |
Start 25: testparser/Scenario: NMODL can define macros using DEFINE keyword | |
25/111 Test #25: testparser/Scenario: NMODL can define macros using DEFINE keyword ................................... Passed 0.02 sec | |
Start 26: testparser/Scenario: Macros can be used anywhere in the mod file | |
26/111 Test #26: testparser/Scenario: Macros can be used anywhere in the mod file .................................... Passed 0.02 sec | |
Start 27: testparser/Scenario: NMODL parser accepts empty unit specification | |
27/111 Test #27: testparser/Scenario: NMODL parser accepts empty unit specification .................................. Passed 0.02 sec | |
Start 28: testparser/Scenario: NMODL parser running number of valid NMODL constructs | |
28/111 Test #28: testparser/Scenario: NMODL parser running number of valid NMODL constructs .......................... Passed 0.08 sec | |
Start 29: testparser/Scenario: NMODL parser running number of invalid NMODL constructs | |
29/111 Test #29: testparser/Scenario: NMODL parser running number of invalid NMODL constructs ........................ Passed 0.02 sec | |
Start 30: testparser/Scenario: Check that the parser doesn't crash when passing invalid INCLUDE constructs | |
30/111 Test #30: testparser/Scenario: Check that the parser doesn't crash when passing invalid INCLUDE constructs .... Passed 0.02 sec | |
Start 31: testparser/Scenario: NEURON block can add CURIE information | |
31/111 Test #31: testparser/Scenario: NEURON block can add CURIE information ......................................... Passed 0.02 sec | |
Start 32: testparser/Scenario: Check parents in valid NMODL constructs | |
32/111 Test #32: testparser/Scenario: Check parents in valid NMODL constructs ........................................ Passed 0.33 sec | |
Start 33: testparser/Scenario: Legacy differential equation solver | |
33/111 Test #33: testparser/Scenario: Legacy differential equation solver ............................................ Passed 0.02 sec | |
Start 34: testparser/Scenario: Check if a NEURON block is parsed with correct location info in its token | |
34/111 Test #34: testparser/Scenario: Check if a NEURON block is parsed with correct location info in its token ...... Passed 0.02 sec | |
Start 35: testvisitor/Scenario: AfterCVodeToCnexpVisitor changes after_cvode solver method to cnexp | |
35/111 Test #35: testvisitor/Scenario: AfterCVodeToCnexpVisitor changes after_cvode solver method to cnexp ........... Passed 0.05 sec | |
Start 36: testvisitor/Scenario: Perform constant folder on NMODL constructs | |
36/111 Test #36: testvisitor/Scenario: Perform constant folder on NMODL constructs ................................... Passed 0.04 sec | |
Start 37: testvisitor/Scenario: Perform DefUse analysis on NMODL constructs | |
37/111 Test #37: testvisitor/Scenario: Perform DefUse analysis on NMODL constructs ................................... Passed 0.05 sec | |
Start 38: testvisitor/Scenario: GLOBAL to RANGE variable transformer | |
38/111 Test #38: testvisitor/Scenario: GLOBAL to RANGE variable transformer .......................................... Passed 0.04 sec | |
Start 39: testvisitor/Scenario: Check insertion of implicit arguments | |
39/111 Test #39: testvisitor/Scenario: Check insertion of implicit arguments ......................................... Passed 0.04 sec | |
Start 40: testvisitor/Scenario: Inlining of external procedure calls | |
40/111 Test #40: testvisitor/Scenario: Inlining of external procedure calls .......................................... Passed 0.04 sec | |
Start 41: testvisitor/Scenario: Inlining of function call as argument in external function | |
41/111 Test #41: testvisitor/Scenario: Inlining of function call as argument in external function .................... Passed 0.04 sec | |
Start 42: testvisitor/Scenario: Inlining of simple, one level procedure call | |
42/111 Test #42: testvisitor/Scenario: Inlining of simple, one level procedure call .................................. Passed 0.04 sec | |
Start 43: testvisitor/Scenario: Inlining of nested procedure call | |
43/111 Test #43: testvisitor/Scenario: Inlining of nested procedure call ............................................. Passed 0.04 sec | |
Start 44: testvisitor/Scenario: Inline function call in procedure | |
44/111 Test #44: testvisitor/Scenario: Inline function call in procedure ............................................. Passed 0.04 sec | |
Start 45: testvisitor/Scenario: Inling function call within conditional statement | |
45/111 Test #45: testvisitor/Scenario: Inling function call within conditional statement ............................. Passed 0.04 sec | |
Start 46: testvisitor/Scenario: Inline multiple function calls in same statement | |
46/111 Test #46: testvisitor/Scenario: Inline multiple function calls in same statement .............................. Passed 0.04 sec | |
Start 47: testvisitor/Scenario: Inline nested function calls withing arguments | |
47/111 Test #47: testvisitor/Scenario: Inline nested function calls withing arguments ................................ Passed 0.04 sec | |
Start 48: testvisitor/Scenario: Inline function call in non-binary expression | |
48/111 Test #48: testvisitor/Scenario: Inline function call in non-binary expression ................................. Passed 0.04 sec | |
Start 49: testvisitor/Scenario: Inline function call as standalone expression | |
49/111 Test #49: testvisitor/Scenario: Inline function call as standalone expression ................................. Passed 0.04 sec | |
Start 50: testvisitor/Scenario: Inline procedure call as standalone statement as well as part of expression | |
50/111 Test #50: testvisitor/Scenario: Inline procedure call as standalone statement as well as part of expression ... Passed 0.04 sec | |
Start 51: testvisitor/Scenario: Inlining pass handles local-global name conflict | |
51/111 Test #51: testvisitor/Scenario: Inlining pass handles local-global name conflict .............................. Passed 0.04 sec | |
Start 52: testvisitor/Scenario: Trying to inline a function with VERBATIM block | |
52/111 Test #52: testvisitor/Scenario: Trying to inline a function with VERBATIM block ............................... Passed 0.04 sec | |
Start 53: testvisitor/Convert NMODL to AST to JSON form using JSONVisitor | |
53/111 Test #53: testvisitor/Convert NMODL to AST to JSON form using JSONVisitor ..................................... Passed 0.04 sec | |
Start 54: testvisitor/Scenario: Convert KINETIC to DERIVATIVE using KineticBlock visitor | |
54/111 Test #54: testvisitor/Scenario: Convert KINETIC to DERIVATIVE using KineticBlock visitor ...................... Passed 0.06 sec | |
Start 55: testvisitor/Scenario: Localizer test with single global block | |
55/111 Test #55: testvisitor/Scenario: Localizer test with single global block ....................................... Passed 0.04 sec | |
Start 56: testvisitor/Scenario: Localizer test with use of verbatim block | |
56/111 Test #56: testvisitor/Scenario: Localizer test with use of verbatim block ..................................... Passed 0.04 sec | |
Start 57: testvisitor/Scenario: Localizer test with multiple global blocks | |
57/111 Test #57: testvisitor/Scenario: Localizer test with multiple global blocks .................................... Passed 0.04 sec | |
Start 58: testvisitor/Scenario: LocalVarRenameVisitor works with InlineVisitor | |
58/111 Test #58: testvisitor/Scenario: LocalVarRenameVisitor works with InlineVisitor ................................ Passed 0.04 sec | |
Start 59: testvisitor/Scenario: LOCAL to ASSIGNED variable transformer | |
59/111 Test #59: testvisitor/Scenario: LOCAL to ASSIGNED variable transformer ........................................ Passed 0.04 sec | |
Start 60: testvisitor/Scenario: Searching for ast nodes using AstLookupVisitor | |
60/111 Test #60: testvisitor/Scenario: Searching for ast nodes using AstLookupVisitor ................................ Passed 0.04 sec | |
Start 61: testvisitor/Scenario: Perform loop unrolling of FROM construct | |
61/111 Test #61: testvisitor/Scenario: Perform loop unrolling of FROM construct ...................................... Passed 0.04 sec | |
Start 62: testvisitor/Scenario: Running visitor passes multiple times | |
62/111 Test #62: testvisitor/Scenario: Running visitor passes multiple times ......................................... Passed 0.04 sec | |
Start 63: testvisitor/Scenario: Sympy specific AST to NMODL conversion | |
63/111 Test #63: testvisitor/Scenario: Sympy specific AST to NMODL conversion ........................................ Passed 0.04 sec | |
Start 64: testvisitor/Scenario: NeuronSolveVisitor visitor solves different ODE types | |
64/111 Test #64: testvisitor/Scenario: NeuronSolveVisitor visitor solves different ODE types ......................... Passed 0.04 sec | |
Start 65: testvisitor/Scenario: Convert AST back to NMODL form | |
65/111 Test #65: testvisitor/Scenario: Convert AST back to NMODL form ................................................ Passed 0.13 sec | |
Start 66: testvisitor/Scenario: Symbol table generation with Perf stat visitor | |
66/111 Test #66: testvisitor/Scenario: Symbol table generation with Perf stat visitor ................................ Passed 0.05 sec | |
Start 67: testvisitor/Scenario: Renaming any variable in mod file with RenameVisitor | |
67/111 Test #67: testvisitor/Scenario: Renaming any variable in mod file with RenameVisitor .......................... Passed 0.04 sec | |
Start 68: testvisitor/Scenario: Renaming with presence of local and global variables in same block | |
68/111 Test #68: testvisitor/Scenario: Renaming with presence of local and global variables in same block ............ Passed 0.04 sec | |
Start 69: testvisitor/Scenario: Renaming in the absence of global blocks | |
69/111 Test #69: testvisitor/Scenario: Renaming in the absence of global blocks ...................................... Passed 0.04 sec | |
Start 70: testvisitor/Scenario: Variable renaming in nested blocks | |
70/111 Test #70: testvisitor/Scenario: Variable renaming in nested blocks ............................................ Passed 0.04 sec | |
Start 71: testvisitor/Scenario: Renaming in presence of local variable in verbatim block | |
71/111 Test #71: testvisitor/Scenario: Renaming in presence of local variable in verbatim block ...................... Passed 0.04 sec | |
Start 72: testvisitor/Scenario: TABLE stmt | |
72/111 Test #72: testvisitor/Scenario: TABLE stmt .................................................................... Passed 0.04 sec | |
Start 73: testvisitor/Scenario: Destructor block | |
73/111 Test #73: testvisitor/Scenario: Destructor block .............................................................. Passed 0.04 sec | |
Start 74: testvisitor/Scenario: Ion variable in CONSTANT block | |
74/111 Test #74: testvisitor/Scenario: Ion variable in CONSTANT block ................................................ Passed 0.04 sec | |
Start 75: testvisitor/Scenario: INDEPENDENT block | |
75/111 Test #75: testvisitor/Scenario: INDEPENDENT block ............................................................. Passed 0.04 sec | |
Start 76: testvisitor/Scenario: FUNCTION_TABLE block | |
76/111 Test #76: testvisitor/Scenario: FUNCTION_TABLE block .......................................................... Passed 0.04 sec | |
Start 77: testvisitor/Scenario: At most one DERIVATIVE block | |
77/111 Test #77: testvisitor/Scenario: At most one DERIVATIVE block .................................................. Passed 0.04 sec | |
Start 78: testvisitor/Scenario: RANDOM Construct | |
78/111 Test #78: testvisitor/Scenario: RANDOM Construct .............................................................. Passed 0.04 sec | |
Start 79: testvisitor/Solve ODEs using legacy NeuronSolveVisitor | |
79/111 Test #79: testvisitor/Solve ODEs using legacy NeuronSolveVisitor .............................................. Passed 0.04 sec | |
Start 80: testvisitor/Scenario: Solving ODEs with STEADYSTATE solve method | |
80/111 Test #80: testvisitor/Scenario: Solving ODEs with STEADYSTATE solve method .................................... Passed 0.04 sec | |
Start 81: testvisitor/Scenario: Addition of CONDUCTANCE using SympyConductance visitor | |
81/111 Test #81: testvisitor/Scenario: Addition of CONDUCTANCE using SympyConductance visitor ........................ Passed 49.08 sec | |
Start 82: testvisitor/Scenario: Check compare_blocks in sympy unit tests | |
82/111 Test #82: testvisitor/Scenario: Check compare_blocks in sympy unit tests ...................................... Passed 0.84 sec | |
Start 83: testvisitor/Scenario: Check local vars name-clash prevention | |
83/111 Test #83: testvisitor/Scenario: Check local vars name-clash prevention ........................................ Passed 1.01 sec | |
Start 84: testvisitor/Scenario: Solve ODEs with cnexp or euler method using SympySolverVisitor | |
84/111 Test #84: testvisitor/Scenario: Solve ODEs with cnexp or euler method using SympySolverVisitor ................ Passed 8.06 sec | |
Start 85: testvisitor/Scenario: Solve ODEs with derivimplicit method using SympySolverVisitor | |
85/111 Test #85: testvisitor/Scenario: Solve ODEs with derivimplicit method using SympySolverVisitor ................. Passed 2.52 sec | |
Start 86: testvisitor/Scenario: LINEAR solve block (SympySolver Visitor) | |
86/111 Test #86: testvisitor/Scenario: LINEAR solve block (SympySolver Visitor) ...................................... Passed 1.96 sec | |
Start 87: testvisitor/Scenario: Solve NONLINEAR block using SympySolver Visitor | |
87/111 Test #87: testvisitor/Scenario: Solve NONLINEAR block using SympySolver Visitor ............................... Passed 1.02 sec | |
Start 88: testvisitor/Scenario: Solve KINETIC block using SympySolver Visitor | |
88/111 Test #88: testvisitor/Scenario: Solve KINETIC block using SympySolver Visitor ................................. Passed 1.11 sec | |
Start 89: testvisitor/Scenario: Code generation for EigenNewtonSolver | |
89/111 Test #89: testvisitor/Scenario: Code generation for EigenNewtonSolver ......................................... Passed 1.06 sec | |
Start 90: testvisitor/Scenario: Parse UNITS block of mod files using Units Visitor | |
90/111 Test #90: testvisitor/Scenario: Parse UNITS block of mod files using Units Visitor ............................ Passed 0.05 sec | |
Start 91: testvisitor/Scenario: Searching for variable name using VarUsageVisitor | |
91/111 Test #91: testvisitor/Scenario: Searching for variable name using VarUsageVisitor ............................. Passed 0.04 sec | |
Start 92: testvisitor/Parse VERBATIM block using Verbatim Visitor | |
92/111 Test #92: testvisitor/Parse VERBATIM block using Verbatim Visitor ............................................. Passed 0.04 sec | |
Start 93: testvisitor/Scenario: Get node name with index TestVisitor | |
93/111 Test #93: testvisitor/Scenario: Get node name with index TestVisitor .......................................... Passed 0.04 sec | |
Start 94: testprinter/JSON printer converting object to string form | |
94/111 Test #94: testprinter/JSON printer converting object to string form ........................................... Passed 0.01 sec | |
Start 95: testsymtab/Scenario: Symbol properties can be added and converted to string | |
95/111 Test #95: testsymtab/Scenario: Symbol properties can be added and converted to string ......................... Passed 0.01 sec | |
Start 96: testsymtab/Scenario: Multiple properties can be added to Symbol | |
96/111 Test #96: testsymtab/Scenario: Multiple properties can be added to Symbol ..................................... Passed 0.01 sec | |
Start 97: testsymtab/Scenario: Symbol table allows operations like insert, lookup | |
97/111 Test #97: testsymtab/Scenario: Symbol table allows operations like insert, lookup ............................. Passed 0.01 sec | |
Start 98: testsymtab/Scenario: Global symbol table (ModelSymbol) allows scope based operations | |
98/111 Test #98: testsymtab/Scenario: Global symbol table (ModelSymbol) allows scope based operations ................ Passed 0.01 sec | |
Start 99: testsymtab/Scenario: Symbol class allows manipulation | |
99/111 Test #99: testsymtab/Scenario: Symbol class allows manipulation ............................................... Passed 0.01 sec | |
Start 100: testnewton/Scenario: Non-linear system to solve with Newton Numerical Diff Solver | |
100/111 Test #100: testnewton/Scenario: Non-linear system to solve with Newton Numerical Diff Solver ................... Passed 0.01 sec | |
Start 101: testnewton/Scenario: Non-linear system to solve with Newton Solver | |
101/111 Test #101: testnewton/Scenario: Non-linear system to solve with Newton Solver .................................. Passed 0.01 sec | |
Start 102: testcrout/Scenario: Compare Crout solver with Eigen | |
102/111 Test #102: testcrout/Scenario: Compare Crout solver with Eigen ................................................. Passed 0.26 sec | |
Start 103: testunitlexer/Unit Lexer tests for valid tokens | |
103/111 Test #103: testunitlexer/Unit Lexer tests for valid tokens ..................................................... Passed 0.01 sec | |
Start 104: testunitparser/Scenario: Unit parser accepting valid units definition | |
104/111 Test #104: testunitparser/Scenario: Unit parser accepting valid units definition ............................... Passed 0.02 sec | |
Start 105: testunitparser/Scenario: Unit parser accepting dependent/nested units definition | |
105/111 Test #105: testunitparser/Scenario: Unit parser accepting dependent/nested units definition .................... Passed 0.01 sec | |
Start 106: Ode | |
106/111 Test #106: Ode ................................................................................................. Passed 2.10 sec | |
Start 107: Pybind | |
107/111 Test #107: Pybind .............................................................................................. Passed 0.99 sec | |
Start 108: cabpump.mod | |
108/111 Test #108: cabpump.mod ......................................................................................... Passed 0.06 sec | |
Start 109: ican.mod | |
109/111 Test #109: ican.mod ............................................................................................ Passed 0.05 sec | |
Start 110: test_functor.mod | |
110/111 Test #110: test_functor.mod .................................................................................... Passed 0.04 sec | |
Start 111: watch_test.mod | |
111/111 Test #111: watch_test.mod ...................................................................................... Passed 0.05 sec | |
100% tests passed, 0 tests failed out of 111 | |
Total Test time (real) = 74.23 sec | |
[32;1m$ cp -r Testing/ ${CI_PROJECT_DIR}/[0;m | |
[32;1m$ module load unstable unit-test-translator[0;m | |
[32;1m$ cmake2junit > ${CI_PROJECT_DIR}/ctest.xml[0;m | |
[32;1m$ exit ${i_am_a_failure}[0;m | |
section_end:1709719442:step_script [0Ksection_start:1709719442:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
Using git from spack modules | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=171442 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
initial_environment.env: found 1 matching files and directories[0;m | |
Testing/: found 7 matching files and directories [0;m | |
Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1198487 responseStatus[0;m=201 Created token[0;m=64_zZ2BV | |
[32;1mUploading artifacts...[0;m | |
Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=171458 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
ctest.xml: found 1 matching files and directories [0;m | |
Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1198487 responseStatus[0;m=201 Created token[0;m=64_zZ2BV | |
section_end:1709719444:upload_artifacts_on_success [0Ksection_start:1709719444:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
Using git from spack modules | |
section_end:1709719445:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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