Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/218299 (:no_entry:) running on GitHub PR neuronsimulator/nrn#2926.

build-neuron-nmodl-intel-legacy.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1718980225:resolve_secrets
Resolving secrets
section_end:1718980225:resolve_secrets
section_start:1718980225:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor772478009, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 218299, build ref , job ID 1326948
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J1326948_PROD_P2160_CP0_C2
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2261413
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1326948_PROD_P2160_CP0_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299 --ntasks=2 --jobid=2261413 --cpus-per-task=8 --mem=160G     
section_end:1718980241:prepare_executor
section_start:1718980241:prepare_script
Preparing environment
Using git from spack modules
Running on r1i7n21 via bbpv1.epfl.ch...
section_end:1718980247:prepare_script
section_start:1718980247:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718980247:get_sources
section_start:1718980247:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=113826 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1718980253:restore_cache
section_start:1718980253:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1326947)...
Runtime platform                                    arch=amd64 os=linux pid=113924 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=1326947 responseStatus=200 OK token=glcbt-64
section_end:1718980254:download_artifacts
section_start:1718980254:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326948/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326948/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326948/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326948/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326948/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326948/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299/J1326948_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/kajq4hgnwsnwwwexhdhgurqvuwfrf65q
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory:    /nvme/bbpcihpcproj12/2261413/ccache
Config file:        /nvme/bbpcihpcproj12/2261413/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Fri Jun 21 16:31:00 2024
Local storage:
  Cache size (GB):   0.47 / 0.51 (91.47%)
  Files:            11564
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/kajq4hgnwsnwwwexhdhgurqvuwfrf65q

Concretized
--------------------------------
 -   ocjgu6c  neuron@git.663580dcdb8a684c0ad476f19999a71316289cb6=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   fz3oxtc      ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  kajq4hg      ^nmodl@git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_gcc-12.3.0-skylake/nmodl-git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24_develop-kajq4h
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt
==> Installing neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-ocjgu6cd3ij4xgpiqzh2u7dl7yrlhuhs [49/49]
==> No binary for neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-ocjgu6cd3ij4xgpiqzh2u7dl7yrlhuhs found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-ocjgu6cd3ij4xgpiqzh2u7dl7yrlhuhs
  Stage: 22.29s.  Cmake: 1m 5.89s.  Build: 7m 53.47s.  Install: 31.82s.  Post-install: 0.59s.  Total: 9m 54.72s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_oneapi-2023.2.0-skylake/neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6_develop-ocjgu6
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be ocjgu6cd3ij4xgpiqzh2u7dl7yrlhuhs
$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")
$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Cache directory:            /nvme/bbpcihpcproj12/2261413/ccache
Config file:                /nvme/bbpcihpcproj12/2261413/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Fri Jun 21 16:44:24 2024
Cacheable calls:             1000 / 1149 (87.03%)
  Hits:                       969 / 1000 (96.90%)
    Direct:                   535 /  969 (55.21%)
    Preprocessed:             434 /  969 (44.79%)
  Misses:                      31 / 1000 ( 3.10%)
Uncacheable calls:            149 / 1149 (12.97%)
  Autoconf compile/link:        5 /  149 ( 3.36%)
  Called for linking:         129 /  149 (86.58%)
  Called for preprocessing:     1 /  149 ( 0.67%)
  Compilation failed:           2 /  149 ( 1.34%)
  No input file:               12 /  149 ( 8.05%)
Successful lookups:
  Direct:                     535 / 1002 (53.39%)
  Preprocessed:               434 /  467 (92.93%)
Local storage:
  Cache size (GB):           0.47 / 0.51 (91.55%)
  Files:                    11669
  Cleanups:                     1
  Hits:                       969 / 1002 (96.71%)
  Misses:                      33 / 1002 ( 3.29%)
  Reads:                     2004
  Writes:                     420
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1718981066:step_script
section_start:1718981066:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:intel:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=139015 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected 
Created cache
section_end:1718981089:archive_cache
section_start:1718981089:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=139138 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1326948 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=139176 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=1326948 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=139217 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=1326948 responseStatus=201 Created token=glcbt-64
section_end:1718981091:upload_artifacts_on_success
section_start:1718981091:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718981092:cleanup_file_variables
Job succeeded

build-neuron-nmodl-intel-shared.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1718980226:resolve_secrets
Resolving secrets
section_end:1718980226:resolve_secrets
section_start:1718980226:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2954434994, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 218299, build ref , job ID 1326949
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J1326949_PROD_P2160_CP1_C7
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2261414
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1326949_PROD_P2160_CP1_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299 --ntasks=2 --jobid=2261414 --cpus-per-task=8 --mem=160G     
section_end:1718980241:prepare_executor
section_start:1718980241:prepare_script
Preparing environment
Using git from spack modules
Running on r1i7n20 via bbpv1.epfl.ch...
section_end:1718980246:prepare_script
section_start:1718980246:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718980247:get_sources
section_start:1718980247:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:intel:shared-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=176941 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1718980253:restore_cache
section_start:1718980253:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1326947)...
Runtime platform                                    arch=amd64 os=linux pid=177209 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=1326947 responseStatus=200 OK token=glcbt-64
section_end:1718980254:download_artifacts
section_start:1718980254:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326949/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326949/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326949/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326949/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326949/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326949/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299/J1326949_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/kajq4hgnwsnwwwexhdhgurqvuwfrf65q
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory:    /nvme/bbpcihpcproj12/2261414/ccache
Config file:        /nvme/bbpcihpcproj12/2261414/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Fri Jun 21 16:31:00 2024
Local storage:
  Cache size (GB):   0.47 / 0.51 (91.44%)
  Files:            11313
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/kajq4hgnwsnwwwexhdhgurqvuwfrf65q

Concretized
--------------------------------
 -   vbbhjmt  neuron@git.663580dcdb8a684c0ad476f19999a71316289cb6=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   fz3oxtc      ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  kajq4hg      ^nmodl@git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul [44/49]
==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul
  Stage: 2.33s.  Cmake: 5.07s.  Build: 1.71s.  Install: 0.12s.  Post-install: 0.10s.  Total: 9.47s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_gcc-12.3.0-skylake/nmodl-git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24_develop-kajq4h
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
==> Installing neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-vbbhjmtgg43bax2zelwhpkqusoymvny2 [49/49]
==> No binary for neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-vbbhjmtgg43bax2zelwhpkqusoymvny2 found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-vbbhjmtgg43bax2zelwhpkqusoymvny2
  Stage: 23.38s.  Cmake: 1m 16.87s.  Build: 17m 51.65s.  Install: 2m 45.10s.  Post-install: 10.02s.  Total: 22m 33.07s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_oneapi-2023.2.0-skylake/neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6_develop-vbbhjm
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be vbbhjmtgg43bax2zelwhpkqusoymvny2
$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")
$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Cache directory:            /nvme/bbpcihpcproj12/2261414/ccache
Config file:                /nvme/bbpcihpcproj12/2261414/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Fri Jun 21 16:57:39 2024
Cacheable calls:             1022 / 1217 (83.98%)
  Hits:                       991 / 1022 (96.97%)
    Direct:                   557 /  991 (56.21%)
    Preprocessed:             434 /  991 (43.79%)
  Misses:                      31 / 1022 ( 3.03%)
Uncacheable calls:            195 / 1217 (16.02%)
  Autoconf compile/link:        5 /  195 ( 2.56%)
  Called for linking:         164 /  195 (84.10%)
  Called for preprocessing:     1 /  195 ( 0.51%)
  Compilation failed:           2 /  195 ( 1.03%)
  No input file:               23 /  195 (11.79%)
Successful lookups:
  Direct:                     557 / 1024 (54.39%)
  Preprocessed:               434 /  467 (92.93%)
Local storage:
  Cache size (GB):           0.46 / 0.51 (90.26%)
  Files:                    11338
  Cleanups:                     2
  Hits:                       991 / 1024 (96.78%)
  Misses:                      33 / 1024 ( 3.22%)
  Reads:                     2048
  Writes:                     420
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1718981863:step_script
section_start:1718981863:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:intel:shared-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=218206 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Ashared-1-non_protected 
Created cache
section_end:1718981886:archive_cache
section_start:1718981886:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=219547 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1326949 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=219602 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=1326949 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=219659 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=1326949 responseStatus=201 Created token=glcbt-64
section_end:1718981888:upload_artifacts_on_success
section_start:1718981888:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718981889:cleanup_file_variables
Job succeeded

build-neuron-nmodl-nvhpc-acc-legacy.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1718980227:resolve_secrets
Resolving secrets
section_end:1718980227:resolve_secrets
section_start:1718980227:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1723420955, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 218299, build ref , job ID 1326950
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J1326950_PROD_P2160_CP2_C8
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2261415
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1326950_PROD_P2160_CP2_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299 --ntasks=2 --jobid=2261415 --cpus-per-task=8 --mem=160G     
section_end:1718980241:prepare_executor
section_start:1718980241:prepare_script
Preparing environment
Using git from spack modules
Running on r1i7n20 via bbpv1.epfl.ch...
section_end:1718980247:prepare_script
section_start:1718980247:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718980247:get_sources
section_start:1718980247:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=177020 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1718980253:restore_cache
section_start:1718980253:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1326947)...
Runtime platform                                    arch=amd64 os=linux pid=177134 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=1326947 responseStatus=200 OK token=glcbt-64
section_end:1718980254:download_artifacts
section_start:1718980254:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326950/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326950/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326950/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326950/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326950/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326950/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299/J1326950_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/kajq4hgnwsnwwwexhdhgurqvuwfrf65q
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory:    /nvme/bbpcihpcproj12/2261415/ccache
Config file:        /nvme/bbpcihpcproj12/2261415/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Fri Jun 21 16:30:59 2024
Local storage:
  Cache size (GB):   0.46 / 0.51 (89.11%)
  Files:            11980
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/kajq4hgnwsnwwwexhdhgurqvuwfrf65q

Concretized
--------------------------------
 -   va5dk7n  neuron@git.663580dcdb8a684c0ad476f19999a71316289cb6=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   az6cwid      ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  kajq4hg      ^nmodl@git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_gcc-12.3.0-skylake/nmodl-git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24_develop-kajq4h
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
==> Installing neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-va5dk7nr3yp5qudxjfoi5yw2hax25xjs [50/50]
==> No binary for neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-va5dk7nr3yp5qudxjfoi5yw2hax25xjs found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-va5dk7nr3yp5qudxjfoi5yw2hax25xjs
  Stage: 19.08s.  Cmake: 1m 12.29s.  Build: 24m 58.65s.  Install: 1m 24.71s.  Post-install: 6.10s.  Total: 28m 5.14s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_nvhpc-23.1-skylake/neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6_develop-va5dk7
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be va5dk7nr3yp5qudxjfoi5yw2hax25xjs
$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")
$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Cache directory:            /nvme/bbpcihpcproj12/2261415/ccache
Config file:                /nvme/bbpcihpcproj12/2261415/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Fri Jun 21 17:02:34 2024
Cacheable calls:              998 / 1135 (87.93%)
  Hits:                       966 /  998 (96.79%)
    Direct:                   534 /  966 (55.28%)
    Preprocessed:             432 /  966 (44.72%)
  Misses:                      32 /  998 ( 3.21%)
Uncacheable calls:            137 / 1135 (12.07%)
  Autoconf compile/link:        5 /  137 ( 3.65%)
  Called for linking:         119 /  137 (86.86%)
  Called for preprocessing:     2 /  137 ( 1.46%)
  Compilation failed:           2 /  137 ( 1.46%)
  No input file:                8 /  137 ( 5.84%)
  Preprocessing failed:         1 /  137 ( 0.73%)
Successful lookups:
  Direct:                     534 / 1001 (53.35%)
  Preprocessed:               432 /  466 (92.70%)
Local storage:
  Cache size (GB):           0.46 / 0.51 (90.33%)
  Files:                    12227
  Hits:                       966 / 1000 (96.60%)
  Misses:                      34 / 1000 ( 3.40%)
  Reads:                     2001
  Writes:                     420
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1718982156:step_script
section_start:1718982156:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=238718 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Alegacy-1-non_protected 
Created cache
section_end:1718982178:archive_cache
section_start:1718982178:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=239654 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1326950 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=239695 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=1326950 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=239736 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=1326950 responseStatus=201 Created token=glcbt-64
section_end:1718982180:upload_artifacts_on_success
section_start:1718982180:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718982181:cleanup_file_variables
Job succeeded

build-neuron-nmodl-nvhpc-acc-shared.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1718980227:resolve_secrets
Resolving secrets
section_end:1718980227:resolve_secrets
section_start:1718980227:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2417009037, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 218299, build ref , job ID 1326951
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J1326951_PROD_P2160_CP3_C9
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2261416
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1326951_PROD_P2160_CP3_C9 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299 --ntasks=2 --jobid=2261416 --cpus-per-task=8 --mem=160G     
section_end:1718980241:prepare_executor
section_start:1718980241:prepare_script
Preparing environment
Using git from spack modules
Running on r1i5n14 via bbpv1.epfl.ch...
section_end:1718980245:prepare_script
section_start:1718980245:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718980245:get_sources
section_start:1718980245:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=164320 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1718980251:restore_cache
section_start:1718980251:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1326947)...
Runtime platform                                    arch=amd64 os=linux pid=164423 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=1326947 responseStatus=200 OK token=glcbt-64
section_end:1718980251:download_artifacts
section_start:1718980251:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326951/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326951/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326951/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326951/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326951/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326951/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299/J1326951_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/kajq4hgnwsnwwwexhdhgurqvuwfrf65q
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory:    /nvme/bbpcihpcproj12/2261416/ccache
Config file:        /nvme/bbpcihpcproj12/2261416/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Fri Jun 21 16:30:57 2024
Local storage:
  Cache size (GB):   0.44 / 0.51 (86.54%)
  Files:            10954
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/kajq4hgnwsnwwwexhdhgurqvuwfrf65q

Concretized
--------------------------------
 -   ovu4ey5  neuron@git.663580dcdb8a684c0ad476f19999a71316289cb6=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   az6cwid      ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  kajq4hg      ^nmodl@git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g [42/50]
==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-az6cwiduk3774jmb44p477xjr6dtnm4g
  Stage: 2.52s.  Cmake: 4.07s.  Build: 1.30s.  Install: 0.10s.  Post-install: 0.11s.  Total: 8.27s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_gcc-12.3.0-skylake/nmodl-git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24_develop-kajq4h
==> Installing neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-ovu4ey5dfu7wyp3mdrwouab5oyiiroel [50/50]
==> No binary for neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-ovu4ey5dfu7wyp3mdrwouab5oyiiroel found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-ovu4ey5dfu7wyp3mdrwouab5oyiiroel
  Stage: 26.42s.  Cmake: 1m 10.76s.  Build: 14m 56.68s.  Install: 37.47s.  Post-install: 0.63s.  Total: 17m 12.83s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_nvhpc-23.1-skylake/neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6_develop-ovu4ey
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be ovu4ey5dfu7wyp3mdrwouab5oyiiroel
$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")
$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Cache directory:            /nvme/bbpcihpcproj12/2261416/ccache
Config file:                /nvme/bbpcihpcproj12/2261416/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Fri Jun 21 16:51:32 2024
Cacheable calls:             1018 / 1191 (85.47%)
  Hits:                       986 / 1018 (96.86%)
    Direct:                   557 /  986 (56.49%)
    Preprocessed:             429 /  986 (43.51%)
  Misses:                      32 / 1018 ( 3.14%)
Uncacheable calls:            173 / 1191 (14.53%)
  Autoconf compile/link:        5 /  173 ( 2.89%)
  Called for linking:         147 /  173 (84.97%)
  Called for preprocessing:     2 /  173 ( 1.16%)
  Compilation failed:           2 /  173 ( 1.16%)
  No input file:               16 /  173 ( 9.25%)
  Preprocessing failed:         1 /  173 ( 0.58%)
Successful lookups:
  Direct:                     557 / 1021 (54.55%)
  Preprocessed:               429 /  463 (92.66%)
Local storage:
  Cache size (GB):           0.45 / 0.51 (87.69%)
  Files:                    11197
  Cleanups:                     1
  Hits:                       986 / 1020 (96.67%)
  Misses:                      34 / 1020 ( 3.33%)
  Reads:                     2041
  Writes:                     417
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1718981494:step_script
section_start:1718981494:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=192313 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Ashared-1-non_protected 
Created cache
section_end:1718981516:archive_cache
section_start:1718981516:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=192468 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1326951 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=192508 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=1326951 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=192551 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=1326951 responseStatus=201 Created token=glcbt-64
section_end:1718981518:upload_artifacts_on_success
section_start:1718981518:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718981519:cleanup_file_variables
Job succeeded

build-neuron-nmodl-nvhpc-omp-legacy.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1718980228:resolve_secrets
Resolving secrets
section_end:1718980228:resolve_secrets
section_start:1718980228:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2597913629, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 218299, build ref , job ID 1326952
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J1326952_PROD_P2160_CP4_C10
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2261417
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1326952_PROD_P2160_CP4_C10 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299 --ntasks=2 --jobid=2261417 --cpus-per-task=8 --mem=160G     
section_end:1718980241:prepare_executor
section_start:1718980241:prepare_script
Preparing environment
Using git from spack modules
Running on r1i5n15 via bbpv1.epfl.ch...
section_end:1718980245:prepare_script
section_start:1718980245:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718980245:get_sources
section_start:1718980245:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=120459 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1718980251:restore_cache
section_start:1718980251:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1326947)...
Runtime platform                                    arch=amd64 os=linux pid=120568 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=1326947 responseStatus=200 OK token=glcbt-64
section_end:1718980252:download_artifacts
section_start:1718980252:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326952/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326952/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326952/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326952/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326952/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326952/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299/J1326952_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70  ^/kajq4hgnwsnwwwexhdhgurqvuwfrf65q
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory:    /nvme/bbpcihpcproj12/2261417/ccache
Config file:        /nvme/bbpcihpcproj12/2261417/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Fri Jun 21 16:30:57 2024
Local storage:
  Cache size (GB):   0.48 / 0.51 (92.91%)
  Files:            12802
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/kajq4hgnwsnwwwexhdhgurqvuwfrf65q
 -       ^caliper+cuda cuda_arch=70

Concretized
--------------------------------
 -   zflet2r  neuron@git.663580dcdb8a684c0ad476f19999a71316289cb6=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
 -   vjj3tpl      ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake
[^]  hficqq7          ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  a46bi6u          ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^]  wtcpudz              ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^]  rytdxw5                  ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  7xnekxr          ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^]  vol6npp          ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   az6cwid      ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  kajq4hg      ^nmodl@git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
==> Installing caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 [52/55]
==> No binary for caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 found: installing from source
==> Fetching https://github.com/LLNL/Caliper/archive/v2.11.0.tar.gz
==> No patches needed for caliper
==> caliper: Executing phase: 'cmake'
==> caliper: Executing phase: 'build'
==> caliper: Executing phase: 'install'
==> caliper: Successfully installed caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2
  Stage: 2.80s.  Cmake: 9.05s.  Build: 7.78s.  Install: 1.05s.  Post-install: 0.17s.  Total: 21.14s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_gcc-12.3.0-skylake/nmodl-git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24_develop-kajq4h
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
==> Installing neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-zflet2rvvm7jkyoynzc7nnkbsaodlgtb [55/55]
==> No binary for neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-zflet2rvvm7jkyoynzc7nnkbsaodlgtb found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-zflet2rvvm7jkyoynzc7nnkbsaodlgtb
  Stage: 20.22s.  Cmake: 1m 15.44s.  Build: 16m 14.51s.  Install: 36.04s.  Post-install: 0.93s.  Total: 18m 27.76s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_nvhpc-23.1-skylake/neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6_develop-zflet2
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be zflet2rvvm7jkyoynzc7nnkbsaodlgtb
$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")
$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Cache directory:            /nvme/bbpcihpcproj12/2261417/ccache
Config file:                /nvme/bbpcihpcproj12/2261417/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Fri Jun 21 16:53:17 2024
Cacheable calls:             1161 / 1331 (87.23%)
  Hits:                      1125 / 1161 (96.90%)
    Direct:                   694 / 1125 (61.69%)
    Preprocessed:             431 / 1125 (38.31%)
  Misses:                      36 / 1161 ( 3.10%)
Uncacheable calls:            170 / 1331 (12.77%)
  Autoconf compile/link:        5 /  170 ( 2.94%)
  Called for linking:         136 /  170 (80.00%)
  Called for preprocessing:     4 /  170 ( 2.35%)
  Compilation failed:           2 /  170 ( 1.18%)
  No input file:               22 /  170 (12.94%)
  Preprocessing failed:         1 /  170 ( 0.59%)
Successful lookups:
  Direct:                     694 / 1160 (59.83%)
  Preprocessed:               431 /  465 (92.69%)
Local storage:
  Cache size (GB):           0.48 / 0.51 (92.85%)
  Files:                    12860
  Cleanups:                     1
  Hits:                      1125 / 1159 (97.07%)
  Misses:                      34 / 1159 ( 2.93%)
  Reads:                     2318
  Writes:                     418
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1718981599:step_script
section_start:1718981599:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=147790 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected 
Created cache
section_end:1718981622:archive_cache
section_start:1718981622:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=147900 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1326952 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=147942 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=1326952 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=147995 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=1326952 responseStatus=201 Created token=glcbt-64
section_end:1718981623:upload_artifacts_on_success
section_start:1718981623:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718981624:cleanup_file_variables
Job succeeded

build-neuron-nmodl-nvhpc-omp.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1718980228:resolve_secrets
Resolving secrets
section_end:1718980228:resolve_secrets
section_start:1718980228:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2182779675, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 218299, build ref , job ID 1326953
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J1326953_PROD_P2160_CP5_C11
Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2261418
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1326953_PROD_P2160_CP5_C11 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299 --ntasks=2 --jobid=2261418 --cpus-per-task=8 --mem=160G     
section_end:1718980241:prepare_executor
section_start:1718980241:prepare_script
Preparing environment
Using git from spack modules
Running on r1i4n18 via bbpv1.epfl.ch...
section_end:1718980245:prepare_script
section_start:1718980245:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718980245:get_sources
section_start:1718980245:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=160890 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1718980251:restore_cache
section_start:1718980251:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for build:nmodl (1326947)...
Runtime platform                                    arch=amd64 os=linux pid=160986 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=1326947 responseStatus=200 OK token=glcbt-64
section_end:1718980252:download_artifacts
section_start:1718980252:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326953/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326953/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326953/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326953/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326953/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326953/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299/J1326953_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70  ^/kajq4hgnwsnwwwexhdhgurqvuwfrf65q
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory:    /nvme/bbpcihpcproj12/2261418/ccache
Config file:        /nvme/bbpcihpcproj12/2261418/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Fri Jun 21 16:30:57 2024
Local storage:
  Cache size (GB):   0.46 / 0.51 (90.16%)
  Files:            11770
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^/kajq4hgnwsnwwwexhdhgurqvuwfrf65q
 -       ^caliper+cuda cuda_arch=70

Concretized
--------------------------------
 -   574nvlz  neuron@git.663580dcdb8a684c0ad476f19999a71316289cb6=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  tj3mv5i      ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake
[^]  7jd6loj          ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  e533uuv          ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  z7jpg7s          ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake
[^]  aivjoo2          ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[e]  rd65pst      ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
 -   vjj3tpl      ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake
[^]  hficqq7          ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  a46bi6u          ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake
[^]  wtcpudz              ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake
[^]  rytdxw5                  ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  7xnekxr          ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^]  vol6npp          ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  3fsjp3m      ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  nbi5w5c      ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  vdqwmgi          ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  nv4xh4v          ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  oh2g4in          ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake
[^]  zz4acmm          ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake
[^]  dwjcguu              ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake
[^]  wwn5enj          ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  swjylul      ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[e]  h6t3hgb      ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
 -   az6cwid      ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5o77yem          ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ihotvbs          ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  6kdbhvi      ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[+]  kajq4hg      ^nmodl@git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  pywly2v          ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  ud3echq          ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  evtttrh          ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[^]  teske2k          ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca          ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7validy          ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw              ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo          ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt          ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz              ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  x733hwb      ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  m3dslef          ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  elr5pnt      ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[e]  w2ldcy2          ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake
[^]  3y7uuwr          ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  uqml2to      ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu          ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv      ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  lrf2u3h      ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  mvxx6gh          ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  cbpzath              ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2o7gdvi              ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6domhtg                  ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  edobf76                  ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a6ialdh                  ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jurd5ga                      ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6su7kvx          ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv          ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk              ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  xwl5l6q              ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek              ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  z5nf6n2      ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  wuxetkw          ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  p3xbqxj      ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  t5tovex      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  pdugg7r      ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m)
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_gcc-12.3.0-skylake/nmodl-git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24_develop-kajq4h
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp
==> Installing neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-574nvlzesebxn4cuk67thgxbfegtw7bm [55/55]
==> No binary for neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-574nvlzesebxn4cuk67thgxbfegtw7bm found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6=develop-574nvlzesebxn4cuk67thgxbfegtw7bm
  Stage: 21.97s.  Cmake: 1m 17.39s.  Build: 16m 17.05s.  Install: 34.98s.  Post-install: 0.68s.  Total: 18m 32.72s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_nvhpc-23.1-skylake/neuron-git.663580dcdb8a684c0ad476f19999a71316289cb6_develop-574nvl
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be 574nvlzesebxn4cuk67thgxbfegtw7bm
$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")
$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Cache directory:            /nvme/bbpcihpcproj12/2261418/ccache
Config file:                /nvme/bbpcihpcproj12/2261418/ccache/ccache.conf
System config file:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:              Fri Jun 21 16:53:21 2024
Cacheable calls:             1004 / 1143 (87.84%)
  Hits:                       969 / 1004 (96.51%)
    Direct:                   536 /  969 (55.31%)
    Preprocessed:             433 /  969 (44.69%)
  Misses:                      35 / 1004 ( 3.49%)
Uncacheable calls:            139 / 1143 (12.16%)
  Autoconf compile/link:        5 /  139 ( 3.60%)
  Called for linking:         121 /  139 (87.05%)
  Called for preprocessing:     2 /  139 ( 1.44%)
  Compilation failed:           2 /  139 ( 1.44%)
  No input file:                8 /  139 ( 5.76%)
  Preprocessing failed:         1 /  139 ( 0.72%)
Successful lookups:
  Direct:                     536 / 1003 (53.44%)
  Preprocessed:               433 /  466 (92.92%)
Local storage:
  Cache size (GB):           0.47 / 0.51 (91.38%)
  Files:                    12020
  Cleanups:                     1
  Hits:                       969 / 1002 (96.71%)
  Misses:                      33 / 1002 ( 3.29%)
  Reads:                     2005
  Writes:                     419
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1718981603:step_script
section_start:1718981603:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:neuron:nmodl:nvhpc:omp-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=187239 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-1-non_protected 
Created cache
section_end:1718981625:archive_cache
section_start:1718981625:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=187365 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1326953 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=187404 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=1326953 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=187442 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=1326953 responseStatus=201 Created token=glcbt-64
section_end:1718981627:upload_artifacts_on_success
section_start:1718981627:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718981628:cleanup_file_variables
Job succeeded

build-nmodl.txt

Running with gitlab-runner 15.5.0 (0d4137b8)
  on BB5 map runner pnPo3yJy
section_start:1718979850:resolve_secrets
Resolving secrets
section_end:1718979850:resolve_secrets
section_start:1718979850:prepare_executor
Preparing the "custom" executor
Using Custom executor with driver BB5 PROD runner v0.0.3...
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user 
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor134252489, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 218299, build ref , job ID 1326947
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag 
A slurm job will be created with name GL_J1326947_PROD_P2160_CP0_C7
Job parameters: memory=160G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 2261405
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G    --job-name=GL_J1326947_PROD_P2160_CP0_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299 --ntasks=2 --jobid=2261405 --cpus-per-task=8 --mem=160G     
section_end:1718979866:prepare_executor
section_start:1718979866:prepare_script
Preparing environment
Using git from spack modules
Running on r1i7n20 via bbpv1.epfl.ch...
section_end:1718979870:prepare_script
section_start:1718979870:get_sources
Getting source from Git repository
Using git from spack modules
Skipping Git repository setup
Skipping Git checkout
Skipping Git submodules setup
section_end:1718979871:get_sources
section_start:1718979871:restore_cache
Restoring cache
Using git from spack modules
Checking cache for build:nmodl-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=173030 revision=58ba2b95 version=14.2.0
cache.zip is up to date                            
Successfully extracted cache
section_end:1718979876:restore_cache
section_start:1718979876:download_artifacts
Downloading artifacts
Using git from spack modules
Downloading artifacts for spack_setup (1326945)...
Runtime platform                                    arch=amd64 os=linux pid=173127 revision=58ba2b95 version=14.2.0
Downloading artifacts from coordinator... ok        id=1326945 responseStatus=200 OK token=glcbt-64
section_end:1718979876:download_artifacts
section_start:1718979876:step_script
Executing "step_script" stage of the job script
WARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426
Using git from spack modules
$ SPACK_BUILD="${PWD}/spack-build"
$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env
$ . ${SPACK_ROOT}/share/spack/setup-env.sh
$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config
$ mkdir ${SPACK_USER_CONFIG_PATH}
$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command
$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false
$ spack ${SPACK_EXTRA_FLAGS} config blame config
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326947/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326947/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326947/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326947/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326947/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:19     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:38     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:81     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:94     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:100    connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:105    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:113    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:119    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:124    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:129    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:134    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:142    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:151    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:156    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:185    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:192    db_lock_timeout: 60
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:200    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:205    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:210      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:216      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:221    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:227    install_status: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:231    binary_index_ttl: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:233    flags:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:235      keep_werror: none
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:240    aliases:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:241      concretise: concretize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:242      containerise: containerize
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/config.yaml:243      rm: remove
_builtin                                                                                                          debug: False
$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326947/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:23    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:28      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:32      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:38    unify: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:40    duplicates:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/J1326945/spack/etc/spack/defaults/concretizer.yaml:44      strategy: minimal
$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config
$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P218299/J1326947_local_config)
$ mkdir -p "${XDG_CONFIG_HOME}/git"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"
$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"
$ cat "${XDG_CONFIG_HOME}/git/config"
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"
$ echo "Preparing to install ${SPACK_FULL_SPEC}"
Preparing to install nmodl%gcc ~legacy-unit  
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ module load unstable ccache
$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})
$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299
$ export CCACHE_MAXSIZE=512M
$ export CCACHE_DIR="${TMPDIR}/ccache"
$ mkdir -p ${CCACHE_DIR}
$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then
$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"
$ fi
$ ccache --zero-stats
Statistics zeroed
$ ccache --show-stats --verbose
Cache directory:    /nvme/bbpcihpcproj12/2261405/ccache
Config file:        /nvme/bbpcihpcproj12/2261405/ccache/ccache.conf
System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:      Fri Jun 21 16:24:42 2024
Local storage:
  Cache size (GB):  0.44 / 0.51 (85.96%)
  Files:            5198
  Hits:                0
  Misses:              0
  Reads:               0
  Writes:              0
$ fi
$ module load unstable git ${SPACK_EXTRA_MODULES}
$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}
Input spec
--------------------------------
 -   nmodl%gcc~legacy-unit

Concretized
--------------------------------
 -   kajq4hg  nmodl@git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[e]  yn5fbwg      ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  pywly2v      ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  swjylul          ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake
[^]  ud3echq      ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[e]  b5zzpr3      ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake
[e]  77vzaxs      ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  evtttrh      ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake
[e]  omn6mm4      ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake
[^]  teske2k      ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake
[^]  5dylnca      ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  77ku3vv          ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  p3xbqxj          ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  aj3rk42          ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake
[^]  7validy      ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  r3ehtmw          ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tabj2mo      ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake
[^]  2inh3rt      ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  bzl4xcz          ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake
[^]  t5tovex      ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4fflyib          ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  sokbfzv              ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake
[e]  2sazdxk                  ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake
[^]  uqml2to                  ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  h6f6feu                      ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  xwl5l6q                  ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  275jtek                  ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake
[e]  5wl76vp      ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake
[^]  ihotvbs      ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake

$ set -o pipefail
$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech
==> cmake@3.27.7 : has external module in ['cmake/3.27.7']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw)
==> python@3.11.6 : has external module in ['python/3.11.6']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove
==> Installing nmodl-git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24=develop-kajq4hgnwsnwwwexhdhgurqvuwfrf65q [19/19]
==> No binary for nmodl-git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24=develop-kajq4hgnwsnwwwexhdhgurqvuwfrf65q found: installing from source
==> No patches needed for nmodl
==> nmodl: Executing phase: 'cmake'
==> nmodl: Executing phase: 'build'
==> nmodl: Executing phase: 'install'
==> nmodl: Successfully installed nmodl-git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24=develop-kajq4hgnwsnwwwexhdhgurqvuwfrf65q
  Stage: 1m 11.52s.  Cmake: 2.65s.  Build: 1m 26.75s.  Install: 1.38s.  Post-install: 0.34s.  Total: 2m 42.91s
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P218299/software/install_gcc-12.3.0-skylake/nmodl-git.c8d0833b5a2410bcfdf0d7450b80321361fd3d24_develop-kajq4h
$ set +o pipefail
$ chmod -R g+rX "${SPACK_BUILD}"
$ if [[ ${install_failed} == 1 ]]; then exit 1; fi
$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))
$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"
Determined the installed hash to be kajq4hgnwsnwwwexhdhgurqvuwfrf65q
$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")
$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")
$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src
$ if [ ${SPACK_USE_CCACHE+x} ]; then
$ ccache --cleanup
$ ccache --show-stats --verbose
Cache directory:      /nvme/bbpcihpcproj12/2261405/ccache
Config file:          /nvme/bbpcihpcproj12/2261405/ccache/ccache.conf
System config file:   /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf
Stats updated:        Fri Jun 21 16:29:56 2024
Cacheable calls:       138 /  165 (83.64%)
  Hits:                136 /  138 (98.55%)
    Direct:             28 /  136 (20.59%)
    Preprocessed:      108 /  136 (79.41%)
  Misses:                2 /  138 ( 1.45%)
Uncacheable calls:      27 /  165 (16.36%)
  Called for linking:   24 /   27 (88.89%)
  No input file:         3 /   27 (11.11%)
Successful lookups:
  Direct:               28 /  138 (20.29%)
  Preprocessed:        108 /  110 (98.18%)
Local storage:
  Cache size (GB):    0.44 / 0.51 (85.97%)
  Files:              5202
  Hits:                136 /  138 (98.55%)
  Misses:                2 /  138 ( 1.45%)
  Reads:               276
  Writes:                4
$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .
$ fi
$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt
$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/
$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')
$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env
$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")
$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi
section_end:1718980198:step_script
section_start:1718980198:archive_cache
Saving cache for successful job
Using git from spack modules
Creating cache build:nmodl-1-non_protected...
Runtime platform                                    arch=amd64 os=linux pid=175687 revision=58ba2b95 version=14.2.0
ccache.tar: found 1 matching files and directories 
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected 
Created cache
section_end:1718980221:archive_cache
section_start:1718980221:upload_artifacts_on_success
Uploading artifacts for successful job
Using git from spack modules
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=175842 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
initial_environment.env: found 1 matching files and directories 
spack-build-env.txt: found 1 matching files and directories 
spack-build-out.txt: found 1 matching files and directories 
spack-configure-args.txt: found 1 matching files and directories 
Uploading artifacts as "archive" to coordinator... ok  id=1326947 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=175885 revision=58ba2b95 version=14.2.0
install.xml: found 1 matching files and directories 
Uploading artifacts as "junit" to coordinator... ok  id=1326947 responseStatus=201 Created token=glcbt-64
Uploading artifacts...
Runtime platform                                    arch=amd64 os=linux pid=175925 revision=58ba2b95 version=14.2.0
spack_build_info.env: found 1 matching files and directories 
spack_clone_variables.env: found 1 matching files and directories 
Uploading artifacts as "dotenv" to coordinator... ok  id=1326947 responseStatus=201 Created token=glcbt-64
section_end:1718980222:upload_artifacts_on_success
section_start:1718980222:cleanup_file_variables
Cleaning up project directory and file based variables
Using git from spack modules
section_end:1718980223:cleanup_file_variables
Job succeeded

GitLab logs for neuronsimulator-nrn#2926

!

mac-m1-cmake-build-cmake-on-off-off-address.txt

Running with gitlab-runner 15.4.0 (43b2dc3d)
  on macos-arm64 vGzz-bdp
section_start:1718979731:resolve_secrets
Resolving secrets
section_end:1718979731:resolve_secrets
section_start:1718979731:prepare_executor
Preparing the "shell" executor
Using Shell executor...
section_end:1718979731:prepare_executor
section_start:1718979731:prepare_script
Preparing environment
Running on bbpmacglr01.bbp.epfl.ch...
section_end:1718979731:prepare_script
section_start:1718979731:get_sources
Getting source from Git repository
Fetching changes with git depth set to 20...
Initialized empty Git repository in /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/.git/
Created fresh repository.
Checking out 663580dc as cornu/nrnexec...
Skipping Git submodules setup
section_end:1718979733:get_sources
section_start:1718979733:restore_cache
Restoring cache
Checking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-cornu/nrnexec-1-non_protected...
Runtime platform                                    arch=arm64 os=darwin pid=24189 revision=43b2dc3d version=15.4.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted. 
Successfully extracted cache
section_end:1718979736:restore_cache
section_start:1718979736:step_script
Executing "step_script" stage of the job script
$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command
$ real_python=$(python3 resolve_shim.py)
$ echo "python3=$(command -v python3) is really ${real_python}"
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python
$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv
$ venv/bin/python3 -m ensurepip --upgrade --default-pip
Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpz03mh09z
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpz03mh09z/setuptools-68.2.2-py3-none-any.whl
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpz03mh09z/pip-23.3.1-py3-none-any.whl
Installing collected packages: setuptools, pip
Successfully installed pip-23.3.1 setuptools-68.2.2
$ git submodule update --init --recursive --force --depth 1 -- external/nmodl
Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl'
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl'...
From https://github.com/BlueBrain/nmodl
 * branch            c5ecfea39cbd53ffcc248b1dcf732c1e0ae1ffc4 -> FETCH_HEAD
Submodule path 'external/nmodl': checked out 'c5ecfea39cbd53ffcc248b1dcf732c1e0ae1ffc4'
Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions'
Submodule 'ext/backward' (https://github.com/bombela/backward-cpp.git) registered for path 'external/nmodl/ext/backward'
Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2'
Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11'
Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen'
Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt'
Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json'
Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11'
Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog'
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'...
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl/ext/backward'...
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl/ext/catch2'...
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl/ext/cli11'...
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl/ext/eigen'...
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl/ext/fmt'...
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl/ext/json'...
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl/ext/pybind11'...
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl/ext/spdlog'...
From https://github.com/BlueBrain/hpc-coding-conventions
 * branch            f8f8d69a66c23978d1c9c5dce62de79466f26e5d -> FETCH_HEAD
Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d'
Submodule path 'external/nmodl/ext/backward': checked out '51f0700452cf71c57d43c2d028277b24cde32502'
From https://github.com/catchorg/Catch2
 * branch            8ac8190e494a381072c89f5e161b92a08d98b37b -> FETCH_HEAD
Submodule path 'external/nmodl/ext/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b'
From https://github.com/CLIUtils/CLI11
 * branch            f4d0731cebb123ff0ace712c099dffbcd2c58e5a -> FETCH_HEAD
Submodule path 'external/nmodl/ext/cli11': checked out 'f4d0731cebb123ff0ace712c099dffbcd2c58e5a'
From https://gitlab.com/libeigen/eigen
 * branch            3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
From https://github.com/fmtlib/fmt
 * branch            e69e5f977d458f2650bb346dadf2ad30c5320281 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/fmt': checked out 'e69e5f977d458f2650bb346dadf2ad30c5320281'
From https://github.com/nlohmann/json
 * branch            9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/json': checked out '9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03'
From https://github.com/pybind/pybind11
 * branch            3e9dfa2866941655c56877882565e7577de6fc7b -> FETCH_HEAD
Submodule path 'external/nmodl/ext/pybind11': checked out '3e9dfa2866941655c56877882565e7577de6fc7b'
From https://github.com/gabime/spdlog
 * branch            7c02e204c92545f869e2f04edaab1f19fe8b19fd -> FETCH_HEAD
Submodule path 'external/nmodl/ext/spdlog': checked out '7c02e204c92545f869e2f04edaab1f19fe8b19fd'
$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt
Ignoring importlib-metadata: markers 'python_version < "3.9"' don't match your environment
Ignoring importlib-resources: markers 'python_version < "3.9"' don't match your environment
Collecting scikit-build-core (from -r external/nmodl/requirements.txt (line 2))
  Using cached scikit_build_core-0.9.6-py3-none-any.whl.metadata (19 kB)
Collecting setuptools-scm>=8.0 (from -r external/nmodl/requirements.txt (line 3))
  Using cached setuptools_scm-8.1.0-py3-none-any.whl.metadata (6.6 kB)
Collecting Jinja2>=2.9.3 (from -r external/nmodl/requirements.txt (line 4))
  Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB)
Collecting PyYAML>=3.13 (from -r external/nmodl/requirements.txt (line 5))
  Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB)
Collecting find_libpython (from -r external/nmodl/requirements.txt (line 7))
  Using cached find_libpython-0.4.0-py3-none-any.whl.metadata (2.8 kB)
Collecting sympy>=1.3 (from -r external/nmodl/requirements.txt (line 8))
  Using cached sympy-1.12.1-py3-none-any.whl.metadata (12 kB)
Collecting pytest<=8.1.1 (from -r external/nmodl/requirements.txt (line 12))
  Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB)
Collecting pytest-cov (from -r external/nmodl/requirements.txt (line 13))
  Using cached pytest_cov-5.0.0-py3-none-any.whl.metadata (27 kB)
Collecting numpy (from -r external/nmodl/requirements.txt (line 14))
  Using cached numpy-2.0.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (114 kB)
Collecting jupyter-client (from -r external/nmodl/requirements.txt (line 16))
  Using cached jupyter_client-8.6.2-py3-none-any.whl.metadata (8.3 kB)
Collecting jupyter (from -r external/nmodl/requirements.txt (line 17))
  Using cached jupyter-1.0.0-py2.py3-none-any.whl.metadata (995 bytes)
Collecting myst_parser<2.0.0 (from -r external/nmodl/requirements.txt (line 18))
  Using cached myst_parser-1.0.0-py3-none-any.whl.metadata (5.5 kB)
Collecting mistune<3 (from -r external/nmodl/requirements.txt (line 19))
  Using cached mistune-2.0.5-py2.py3-none-any.whl.metadata (1.5 kB)
Collecting nbconvert (from -r external/nmodl/requirements.txt (line 20))
  Using cached nbconvert-7.16.4-py3-none-any.whl.metadata (8.5 kB)
Collecting nbsphinx>=0.3.2 (from -r external/nmodl/requirements.txt (line 21))
  Using cached nbsphinx-0.9.4-py3-none-any.whl.metadata (2.1 kB)
Collecting sphinxcontrib-applehelp<1.0.3 (from -r external/nmodl/requirements.txt (line 22))
  Using cached sphinxcontrib_applehelp-1.0.2-py2.py3-none-any.whl.metadata (1.4 kB)
Collecting sphinxcontrib-htmlhelp<=2.0.0 (from -r external/nmodl/requirements.txt (line 23))
  Using cached sphinxcontrib_htmlhelp-2.0.0-py2.py3-none-any.whl.metadata (1.6 kB)
Collecting sphinx<6 (from -r external/nmodl/requirements.txt (line 24))
  Using cached sphinx-5.3.0-py3-none-any.whl.metadata (6.4 kB)
Collecting sphinx-rtd-theme (from -r external/nmodl/requirements.txt (line 25))
  Using cached sphinx_rtd_theme-2.0.0-py2.py3-none-any.whl.metadata (4.4 kB)
Collecting docutils<0.20 (from -r external/nmodl/requirements.txt (line 26))
  Using cached docutils-0.19-py3-none-any.whl.metadata (2.7 kB)
Collecting exceptiongroup>=1.0 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2))
  Using cached exceptiongroup-1.2.1-py3-none-any.whl.metadata (6.6 kB)
Collecting packaging>=21.3 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2))
  Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB)
Collecting pathspec>=0.10.1 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2))
  Using cached pathspec-0.12.1-py3-none-any.whl.metadata (21 kB)
Collecting tomli>=1.2.2 (from scikit-build-core->-r external/nmodl/requirements.txt (line 2))
  Using cached tomli-2.0.1-py3-none-any.whl.metadata (8.9 kB)
Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from setuptools-scm>=8.0->-r external/nmodl/requirements.txt (line 3)) (68.2.2)
Collecting MarkupSafe>=2.0 (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 4))
  Using cached MarkupSafe-2.1.5-cp310-cp310-macosx_10_9_universal2.whl.metadata (3.0 kB)
Collecting mpmath<1.4.0,>=1.1.0 (from sympy>=1.3->-r external/nmodl/requirements.txt (line 8))
  Using cached mpmath-1.3.0-py3-none-any.whl.metadata (8.6 kB)
Collecting iniconfig (from pytest<=8.1.1->-r external/nmodl/requirements.txt (line 12))
  Using cached iniconfig-2.0.0-py3-none-any.whl.metadata (2.6 kB)
Collecting pluggy<2.0,>=1.4 (from pytest<=8.1.1->-r external/nmodl/requirements.txt (line 12))
  Using cached pluggy-1.5.0-py3-none-any.whl.metadata (4.8 kB)
Collecting coverage>=5.2.1 (from coverage[toml]>=5.2.1->pytest-cov->-r external/nmodl/requirements.txt (line 13))
  Using cached coverage-7.5.3-cp310-cp310-macosx_11_0_arm64.whl.metadata (8.2 kB)
Collecting jupyter-core!=5.0.*,>=4.12 (from jupyter-client->-r external/nmodl/requirements.txt (line 16))
  Using cached jupyter_core-5.7.2-py3-none-any.whl.metadata (3.4 kB)
Collecting python-dateutil>=2.8.2 (from jupyter-client->-r external/nmodl/requirements.txt (line 16))
  Using cached python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB)
Collecting pyzmq>=23.0 (from jupyter-client->-r external/nmodl/requirements.txt (line 16))
  Using cached pyzmq-26.0.3-cp310-cp310-macosx_10_15_universal2.whl.metadata (6.1 kB)
Collecting tornado>=6.2 (from jupyter-client->-r external/nmodl/requirements.txt (line 16))
  Using cached tornado-6.4.1-cp38-abi3-macosx_10_9_universal2.whl.metadata (2.5 kB)
Collecting traitlets>=5.3 (from jupyter-client->-r external/nmodl/requirements.txt (line 16))
  Using cached traitlets-5.14.3-py3-none-any.whl.metadata (10 kB)
Collecting notebook (from jupyter->-r external/nmodl/requirements.txt (line 17))
  Using cached notebook-7.2.1-py3-none-any.whl.metadata (10 kB)
Collecting qtconsole (from jupyter->-r external/nmodl/requirements.txt (line 17))
  Using cached qtconsole-5.5.2-py3-none-any.whl.metadata (5.1 kB)
Collecting jupyter-console (from jupyter->-r external/nmodl/requirements.txt (line 17))
  Using cached jupyter_console-6.6.3-py3-none-any.whl.metadata (5.8 kB)
Collecting ipykernel (from jupyter->-r external/nmodl/requirements.txt (line 17))
  Using cached ipykernel-6.29.4-py3-none-any.whl.metadata (6.3 kB)
Collecting ipywidgets (from jupyter->-r external/nmodl/requirements.txt (line 17))
  Using cached ipywidgets-8.1.3-py3-none-any.whl.metadata (2.4 kB)
Collecting markdown-it-py<3.0.0,>=1.0.0 (from myst_parser<2.0.0->-r external/nmodl/requirements.txt (line 18))
  Using cached markdown_it_py-2.2.0-py3-none-any.whl.metadata (6.8 kB)
Collecting mdit-py-plugins~=0.3.4 (from myst_parser<2.0.0->-r external/nmodl/requirements.txt (line 18))
  Using cached mdit_py_plugins-0.3.5-py3-none-any.whl.metadata (2.8 kB)
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Installing collected packages: webencodings, wcwidth, snowballstemmer, pure-eval, ptyprocess, mpmath, mistune, find_libpython, fastjsonschema, widgetsnbextension, websocket-client, webcolors, urllib3, uri-template, typing-extensions, types-python-dateutil, traitlets, tornado, tomli, tinycss2, sympy, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, sniffio, six, send2trash, rpds-py, rfc3986-validator, pyzmq, PyYAML, python-json-logger, pygments, pycparser, psutil, prompt-toolkit, prometheus-client, pluggy, platformdirs, pexpect, pathspec, parso, pandocfilters, packaging, overrides, numpy, nest-asyncio, mdurl, MarkupSafe, jupyterlab-widgets, jupyterlab-pygments, jsonpointer, json5, iniconfig, imagesize, idna, h11, fqdn, executing, exceptiongroup, docutils, defusedxml, decorator, debugpy, coverage, charset-normalizer, certifi, babel, attrs, appnope, alabaster, terminado, setuptools-scm, scikit-build-core, rfc3339-validator, requests, referencing, qtpy, python-dateutil, pytest, matplotlib-inline, markdown-it-py, jupyter-core, Jinja2, jedi, httpcore, comm, cffi, bleach, beautifulsoup4, async-lru, asttokens, anyio, stack-data, sphinx, pytest-cov, mdit-py-plugins, jupyter-server-terminals, jupyter-client, jsonschema-specifications, httpx, arrow, argon2-cffi-bindings, sphinxcontrib-jquery, myst_parser, jsonschema, isoduration, ipython, argon2-cffi, sphinx-rtd-theme, nbformat, ipywidgets, ipykernel, qtconsole, nbclient, jupyter-events, jupyter-console, nbconvert, nbsphinx, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab, notebook, jupyter
Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 PyYAML-6.0.1 alabaster-0.7.16 anyio-4.4.0 appnope-0.1.4 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 asttokens-2.4.1 async-lru-2.0.4 attrs-23.2.0 babel-2.15.0 beautifulsoup4-4.12.3 bleach-6.1.0 certifi-2024.6.2 cffi-1.16.0 charset-normalizer-3.3.2 comm-0.2.2 coverage-7.5.3 debugpy-1.8.1 decorator-5.1.1 defusedxml-0.7.1 docutils-0.19 exceptiongroup-1.2.1 executing-2.0.1 fastjsonschema-2.20.0 find_libpython-0.4.0 fqdn-1.5.1 h11-0.14.0 httpcore-1.0.5 httpx-0.27.0 idna-3.7 imagesize-1.4.1 iniconfig-2.0.0 ipykernel-6.29.4 ipython-8.25.0 ipywidgets-8.1.3 isoduration-20.11.0 jedi-0.19.1 json5-0.9.25 jsonpointer-3.0.0 jsonschema-4.22.0 jsonschema-specifications-2023.12.1 jupyter-1.0.0 jupyter-client-8.6.2 jupyter-console-6.6.3 jupyter-core-5.7.2 jupyter-events-0.10.0 jupyter-lsp-2.2.5 jupyter-server-2.14.1 jupyter-server-terminals-0.5.3 jupyterlab-4.2.2 jupyterlab-pygments-0.3.0 jupyterlab-server-2.27.2 jupyterlab-widgets-3.0.11 markdown-it-py-2.2.0 matplotlib-inline-0.1.7 mdit-py-plugins-0.3.5 mdurl-0.1.2 mistune-2.0.5 mpmath-1.3.0 myst_parser-1.0.0 nbclient-0.10.0 nbconvert-7.16.4 nbformat-5.10.4 nbsphinx-0.9.4 nest-asyncio-1.6.0 notebook-7.2.1 notebook-shim-0.2.4 numpy-2.0.0 overrides-7.7.0 packaging-24.1 pandocfilters-1.5.1 parso-0.8.4 pathspec-0.12.1 pexpect-4.9.0 platformdirs-4.2.2 pluggy-1.5.0 prometheus-client-0.20.0 prompt-toolkit-3.0.47 psutil-6.0.0 ptyprocess-0.7.0 pure-eval-0.2.2 pycparser-2.22 pygments-2.18.0 pytest-8.1.1 pytest-cov-5.0.0 python-dateutil-2.9.0.post0 python-json-logger-2.0.7 pyzmq-26.0.3 qtconsole-5.5.2 qtpy-2.4.1 referencing-0.35.1 requests-2.32.3 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.18.1 scikit-build-core-0.9.6 send2trash-1.8.3 setuptools-scm-8.1.0 six-1.16.0 sniffio-1.3.1 snowballstemmer-2.2.0 soupsieve-2.5 sphinx-5.3.0 sphinx-rtd-theme-2.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 stack-data-0.6.3 sympy-1.12.1 terminado-0.18.1 tinycss2-1.3.0 tomli-2.0.1 tornado-6.4.1 traitlets-5.14.3 types-python-dateutil-2.9.0.20240316 typing-extensions-4.12.2 uri-template-1.3.0 urllib3-2.2.2 wcwidth-0.2.13 webcolors-24.6.0 webencodings-0.5.1 websocket-client-1.8.0 widgetsnbextension-4.0.11

[notice] A new release of pip is available: 23.3.1 -> 24.1
[notice] To update, run: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/bin/python3 -m pip install --upgrade pip
$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt
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Requirement already satisfied: asttokens>=2.1.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (2.4.1)
Requirement already satisfied: pure-eval in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (0.2.2)
Using cached pip-24.1-py3-none-any.whl (1.8 MB)
Using cached wheel-0.43.0-py3-none-any.whl (65 kB)
Using cached setuptools-70.1.0-py3-none-any.whl (882 kB)
Using cached scikit_build-0.17.6-py3-none-any.whl (84 kB)
Using cached matplotlib-3.9.0-cp310-cp310-macosx_11_0_arm64.whl (7.8 MB)
Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB)
Using cached Cython-0.29.37-py2.py3-none-any.whl (989 kB)
Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB)
Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl (244 kB)
Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
Using cached fonttools-4.53.0-cp310-cp310-macosx_11_0_arm64.whl (2.2 MB)
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB)
Using cached pillow-10.3.0-cp310-cp310-macosx_11_0_arm64.whl (3.4 MB)
Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB)
Using cached distro-1.9.0-py3-none-any.whl (20 kB)
Installing collected packages: wheel, setuptools, pyparsing, pip, pillow, numpy, mpi4py, kiwisolver, fonttools, distro, cython, cycler, scikit-build, contourpy, bokeh, matplotlib
  Attempting uninstall: setuptools
    Found existing installation: setuptools 68.2.2
    Uninstalling setuptools-68.2.2:
      Successfully uninstalled setuptools-68.2.2
  Attempting uninstall: pip
    Found existing installation: pip 23.3.1
    Uninstalling pip-23.3.1:
      Successfully uninstalled pip-23.3.1
  Attempting uninstall: numpy
    Found existing installation: numpy 2.0.0
    Uninstalling numpy-2.0.0:
      Successfully uninstalled numpy-2.0.0
Successfully installed bokeh-2.4.3 contourpy-1.2.1 cycler-0.12.1 cython-0.29.37 distro-1.9.0 fonttools-4.53.0 kiwisolver-1.4.5 matplotlib-3.9.0 mpi4py-3.1.6 numpy-1.26.4 pillow-10.3.0 pip-24.1 pyparsing-3.1.2 scikit-build-0.17.6 setuptools-70.1.0 wheel-0.43.0
$ source ./venv/bin/activate
$ export PYTHON=${PWD}/venv/bin/python
$ ${PYTHON} --version
Python 3.10.13
$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"
$ export CXX=${CXX:-g++}
$ export CC=${CC:-gcc}
$ brew install flex bison
Warning: flex 2.6.4_2 is already installed and up-to-date.
To reinstall 2.6.4_2, run:
  brew reinstall flex
Warning: bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
  brew reinstall bison
$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"
$ export INSTALL_DIR=$(pwd)/install
$ echo $LANG

$ echo $LC_ALL

$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")
$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'
$ cmake_args=(-G Ninja)
$ if [[ -n "${sanitizer}" ]]; then
$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))
$ fi
$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})
$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")
$ mkdir build && cd build
$ echo "Building with ${cmake_args[@]}"
Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/bin/python
$ cmake .. "${cmake_args[@]}"
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check
-- Sub-module : missing external/coding-conventions : running git submodule update --init
Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions'
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/coding-conventions'...
Submodule path 'external/coding-conventions': checked out '3d157f9c8ea94d196a825aaa7f523265e360dc4b'
-- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123
Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123'
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/Random123'...
From https://github.com/BlueBrain/Random123
 * branch            b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD
Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1'
-- 3rd party project: using Random123 from "external/Random123"
-- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen
Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen'
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/eigen'...
From https://gitlab.com/libeigen/eigen
 * branch            3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
-- 3rd party project: using eigen from "external/eigen"
-- Enabling sanitizers: address
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
-- Checking if /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/bin/python is a working python
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2") 
-- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6") 
-- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include  
-- Found MPI_C: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") 
-- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") 
-- Found MPI: TRUE (found version "3.1")  
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE  
-- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11
Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11'
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/CLI11'...
From https://github.com/CLIUtils/CLI11
 * branch            291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD
Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2'
-- 3rd party project: using CLI11 from "external/CLI11"
CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Building CoreNEURON
-- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)") 
-- Found Perl: /usr/bin/perl (found version "5.30.3") 
-- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH) 
-- Sub-project : using nmodl from from /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl
-- CHECKING FOR FLEX/BISON
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0") 
--  Adding Flex include path as : /opt/homebrew/opt/flex/include/
-- NMODL_TEST_FORMATTING: OFF
-- NMODL_GIT_HOOKS: OFF
-- NMODL_GIT_COMMIT_HOOKS: 
-- NMODL_GIT_PUSH_HOOKS: courtesy-msg
-- NMODL_STATIC_ANALYSIS: OFF
-- NMODL_TEST_STATIC_ANALYSIS: OFF
-- 3rd party project: using eigen from "ext/eigen"
-- 3rd party project: using fmt from "ext/fmt"
-- Version: 10.2.1
-- Build type: Custom
-- 3rd party project: using json from "ext/json"
-- Using the multi-header code from /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl/ext/json/include/
-- 3rd party project: using pybind11 from "ext/pybind11"
-- pybind11 v2.12.0 
-- Found PythonInterp: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.6") 
-- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- 3rd party project: using spdlog from "ext/spdlog"
-- Build spdlog: 1.13.0
-- Build type: Custom
-- CHECKING FOR PYTHON
-- Found Python: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/bin/python3.10 (found suitable version "3.10.13", minimum required is "3.8") found components: Interpreter 
CMake Warning (dev) at external/nmodl/src/pybind/CMakeLists.txt:27 (configure_file):
  configure_file called with unknown argument(s):

   @ONLY@

This warning is for project developers.  Use -Wno-dev to suppress it.

-- 
-- Configured NMODL 0.0 (c5ecfea 2024-06-10 16:25:23 +0200)
-- 
-- You can now build NMODL using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------------+--------------------------------------------------------
--  Target             |   Description
-- --------------------+--------------------------------------------------------
-- test                | Run unit tests
-- install             | Will install NMODL to: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g -openmp-simd 
-- Build Type          | Custom
-- Python Bindings     | OFF
-- Flex                | /opt/homebrew/opt/flex/bin/flex
-- Bison               | /opt/homebrew/opt/bison/bin/bison
-- Python              | /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/bin/python
--   Linked against    | ON
-- --------------------+--------------------------------------------------------
--  See documentation : https://github.com/BlueBrain/nmodl/
-- --------------------+--------------------------------------------------------
-- 
-- 
-- CoreNEURON is enabled with following build configuration:
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Build Type          | SHARED
-- MPI                 | ON
--   DYNAMIC           | OFF
--   INC               | /opt/homebrew/Cellar/open-mpi/5.0.1/include
-- OpenMP              | ON
-- NMODL PATH          | /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/bin/nmodl
-- NMODL FLAGS         | 
-- GPU Support         | OFF
-- Auto Timeout        | ON
-- Wrap exp()          | OFF
-- SplayTree Queue     | ON
-- NetReceive Buffer   | ON
-- Caliper             | OFF
-- Likwid              | OFF
-- Unit Tests          | ON
-- Reporting           | OFF
-- --------------------+--------------------------------------------------------
-- 
Extracting link flags from target 'nrngnu', beware that this can be fragile. Got: 
Extracting link flags from target 'sparse13', beware that this can be fragile. Got: 
Generating link flags from name 'nrnpython', beware that this can be fragile. Got: -lnrnpython
Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: -lnrnpython
Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
-- Sub-module : missing /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/catch2 : running git submodule update --init
Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2'
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/catch2'...
Submodule path 'external/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b'
-- Found Python module 'pytest' with version(s): 8.1.1
-- Found Python module 'pytest_cov' with version(s): 5.0.0
-- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata
Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata'
Cloning into '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/test/rxd/testdata'...
From https://github.com/neuronsimulator/rxdtestdata
 * branch            30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD
Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58'
-- 3rd party project: using rxd/testdata from "test/rxd/testdata"
-- Found Python module 'mpi4py' with version(s): 3.1.6
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_nmodlrandom_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_nmodlrandom_syntax_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_file_mode_py_gpu: gpu not enabled
-- Found Python module 'mpi4py' with version(s): 3.1.6
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled
-- Found OpenSSL: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib (found version "3.2.0")  
-- 
-- Configured NEURON 9.0.0
-- 
-- You can now build NEURON using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------+--------------------------------------------------------------
--  Target       |   Description
-- --------------+--------------------------------------------------------------
-- install       | Will install NEURON to: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install
--               | Change the install location of NEURON using:
--               |   cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path>
-- docs          | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean
-- uninstall     | Removes files installed by make install (todo)
-- --------------+--------------------------------------------------------------
--  Build option | Status
-- --------------+--------------------------------------------------------------
-- C COMPILER    | /usr/bin/gcc
-- CXX COMPILER  | /usr/bin/g++
-- BUILD_TYPE    | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug)
-- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd
-- Shared        | ON
-- MPI           | ON
--   DYNAMIC     | OFF
--   INC         | /opt/homebrew/Cellar/open-mpi/5.0.1/include
--   LIB         | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Python        | ON
--   DYNAMIC     | OFF
--   MODULE      | ON
--  python3.10 (default)
--   EXE         | /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/bin/python
--   INC         | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10
--   LIB         | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- Readline      | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd
-- Curses        | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd
-- RX3D          | OFF
-- Interviews    | OFF
-- CoreNEURON    | ON
--   PATH        | /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/coreneuron
--   LINK FLAGS  |  -lcorenrnmech  -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Tests         | ON
-- --------------+--------------------------------------------------------------
--  See documentation : https://www.neuron.yale.edu/neuron/
-- --------------+--------------------------------------------------------------
-- 
-- Configuring done (24.4s)
-- Generating done (0.1s)
-- Build files have been written to: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build
$ ccache -z
Statistics zeroed
$ ccache -vs 2>/dev/null
Cache directory:    /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/ccache
Config file:        /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf
Stats updated:      Fri Jun 21 16:23:30 2024
Local storage:
  Cache size (GiB):  0.2 / 5.0 ( 4.34%)
  Files:            2368
  Hits:                0
  Misses:              0
  Reads:               0
  Writes:              0
$ cmake --build . --parallel
[0/2] Re-checking globbed directories...
[1/1930] Generating share/nrn/demo/cycle.hoc
[2/1930] Generating share/nrn/demo/demo.ses
[3/1930] Generating share/nrn/demo/demo.hoc
[4/1930] Generating share/nrn/demo/d3init.hoc
[5/1930] Generating share/nrn/demo/dend3.ses
[6/1930] Generating share/nrn/demo/dynchan.ses
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[10/1930] Generating share/nrn/demo/dynclamp.hoc
[11/1930] Generating share/nrn/demo/hh.hoc
[12/1930] Generating share/nrn/demo/dend3/dend3.nrn
[13/1930] Generating share/nrn/demo/hh.ses
[14/1930] Generating share/nrn/demo/nomodel.hoc
[15/1930] Generating share/nrn/demo/pyramid.nrn
[16/1930] Generating share/nrn/demo/pyramid.ses
[17/1930] Update hh.mod for CoreNEURON compatibility
[18/1930] Generating share/nrn/demo/release.hoc
[19/1930] Generating share/nrn/demo/release.ses
[20/1930] Generating share/nrn/demo/release/cabpump.mod
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[29/1930] Generating share/nrn/demo/release/release.mod
[30/1930] Generating share/nrn/demo/singhh.hoc
[31/1930] Generating share/nrn/demo/singhhchan.hoc
[32/1930] Generating share/nrn/demo/sync/demosync.hoc
[33/1930] Generating share/nrn/demo/singhh.ses
[34/1930] Generating share/nrn/demo/sync/init.hoc
[35/1930] Generating share/nrn/demo/sync/cell.hoc
[36/1930] Generating share/nrn/demo/testca.hoc
[37/1930] Generating share/nrn/demo/sync/spkplot.hoc
[38/1930] Generating share/nrn/demo/sync/start.ses
[39/1930] Generating share/nrn/lib/auditscripts/gettarname
[40/1930] Generating share/nrn/demo/sync/synchronize.hoc
[41/1930] Generating share/nrn/lib/auditscripts/hocaudit.sh
[42/1930] Generating share/nrn/lib/auditscripts/notes
[43/1930] Generating share/nrn/lib/auditscripts/saveaudit
[44/1930] Generating share/nrn/lib/auditscripts/retrieve.sh
[45/1930] Generating share/nrn/lib/cleanup
[46/1930] Generating share/nrn/lib/helpdict
[47/1930] Generating share/nrn/lib/hoc/attshape.hoc
[48/1930] Generating share/nrn/lib/hoc/binfo.hoc
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[61/1930] Generating share/nrn/lib/hoc/celbild/inhomofn.hoc
[62/1930] Generating share/nrn/lib/hoc/chanbild/chanbild1.hoc
[63/1930] Generating share/nrn/lib/hoc/chanbild/gategui.hoc
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[66/1930] Generating share/nrn/lib/hoc/chanbild/kstgui.hoc
[67/1930] Generating share/nrn/lib/hoc/chanbild/linoid.hoc
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[73/1930] Generating share/nrn/lib/hoc/chanbild/table.hoc
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[75/1930] Generating share/nrn/lib/hoc/family.hoc
[76/1930] Generating share/nrn/lib/hoc/gatherv.hoc
[77/1930] Generating share/nrn/lib/hoc/funfit.hoc
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[83/1930] Generating share/nrn/lib/hoc/import3d/import3d_sec.hoc
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[89/1930] Generating share/nrn/lib/hoc/lincir/elmbase.hoc
[90/1930] Generating share/nrn/lib/hoc/import3d/read_nts.hoc
[91/1930] Generating share/nrn/lib/hoc/inserter.hoc
[92/1930] Generating share/nrn/lib/hoc/lincir.hoc
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[94/1930] Generating share/nrn/lib/hoc/lincir/lincir1.hoc
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[103/1930] Generating help_data.dat
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[111/1930] Generating share/nrn/lib/hoc/mulfit/eparmlst.hoc
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[126/1930] Generating share/nrn/lib/hoc/mview/mviewxml.hoc
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[169/1930] Generating share/nrn/lib/nrn.defaults.in
[170/1930] Generating share/nrn/lib/prologue.id
[171/1930] Generating share/nrn/lib/python/neuron/__init__.py
[172/1930] Generating share/nrn/lib/python/neuron/config.py
[173/1930] Generating share/nrn/lib/nrnunits.lib
[174/1930] Generating share/nrn/lib/python/neuron/coreneuron.py
[175/1930] Generating share/nrn/lib/python/neuron/expect_hocerr.py
[176/1930] Generating share/nrn/lib/python/neuron/crxd/__init__.py
[177/1930] Generating share/nrn/lib/python/neuron/doc.py
[178/1930] Generating share/nrn/lib/python/neuron/gui.py
[179/1930] Generating share/nrn/lib/python/neuron/gui2/__init__.py
[180/1930] Generating share/nrn/lib/python/neuron/gui2/rangevar.py
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[182/1930] Generating share/nrn/lib/python/neuron/gui2/plotshape.py
[183/1930] Generating share/nrn/lib/python/neuron/gui2/setup_threejs.py
[184/1930] Generating share/nrn/lib/python/neuron/gui2/utilities.py
[185/1930] Generating share/nrn/lib/python/neuron/hclass3.py
[186/1930] Generating share/nrn/lib/python/neuron/neuroml/biophysics.py
[187/1930] Generating share/nrn/lib/python/neuron/neuroml/metadata.py
[188/1930] Generating share/nrn/lib/python/neuron/neuroml/morphml.py
[189/1930] Generating share/nrn/lib/python/neuron/neuroml/__init__.py
[190/1930] Generating share/nrn/lib/python/neuron/nonvint_block_supervisor.py
[191/1930] Generating share/nrn/lib/python/neuron/neuroml/rdxml.py
[192/1930] Generating share/nrn/lib/python/neuron/neuroml/neuroml.py
[193/1930] Generating share/nrn/lib/python/neuron/rxd/__init__.py
[194/1930] Generating share/nrn/lib/python/neuron/neuroml/xml2nrn.py
[195/1930] Generating share/nrn/lib/python/neuron/psection.py
[196/1930] Generating share/nrn/lib/python/neuron/rxd/constants.py
[197/1930] Generating share/nrn/lib/python/neuron/rxd/dimension3.py
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[199/1930] Generating share/nrn/lib/python/neuron/rxd/geometry.py
[200/1930] Generating share/nrn/lib/python/neuron/rxd/geometry3d/FullJoinMorph.py
[201/1930] Generating share/nrn/lib/python/neuron/rxd/generalizedReaction.py
[202/1930] Generating share/nrn/lib/python/neuron/rxd/geometry3d/GeneralizedVoxelization.py
[203/1930] Generating share/nrn/lib/python/neuron/rxd/geometry3d/ctng.pyx
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[211/1930] Generating share/nrn/lib/python/neuron/rxd/geometry3d/triangularMesh.py
[212/1930] Generating share/nrn/lib/python/neuron/rxd/geometry3d/voxelize.py
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[214/1930] Generating share/nrn/lib/python/neuron/rxd/gui.py
[215/1930] Generating share/nrn/lib/python/neuron/rxd/nodelist.py
[216/1930] Generating share/nrn/lib/python/neuron/rxd/initializer.py
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[218/1930] Generating share/nrn/lib/python/neuron/rxd/options.py
[219/1930] Generating share/nrn/lib/python/neuron/rxd/plugins.py
[220/1930] Generating share/nrn/lib/python/neuron/rxd/node.py
[221/1930] Generating share/nrn/lib/python/neuron/rxd/rangevar.py
[222/1930] Generating share/nrn/lib/python/neuron/rxd/rate.py
[223/1930] Generating share/nrn/lib/python/neuron/rxd/reaction.py
[224/1930] Generating share/nrn/lib/python/neuron/rxd/region.py
[225/1930] Generating share/nrn/lib/python/neuron/rxd/rxd.py
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[227/1930] Generating share/nrn/lib/python/neuron/rxd/rxdException.py
[228/1930] Generating share/nrn/lib/python/neuron/rxd/rxdmath.py
[229/1930] Generating share/nrn/lib/python/neuron/rxd/section1d.py
[230/1930] Generating share/nrn/lib/python/neuron/rxd/species.py
[231/1930] Generating share/nrn/lib/python/neuron/rxdtests/do_test.py
[232/1930] Generating share/nrn/lib/python/neuron/rxdtests/readme.txt
[233/1930] Generating share/nrn/lib/python/neuron/rxdtests/run_all.py
[234/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/include_flux3d.py
[235/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/include_flux3d_cvode.py
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[237/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/circadian_rhythm.py
[238/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/multicompartment_reactions.py
[239/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/pure_diffusion_3d.py
[240/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/IraHH.py
[241/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/torun.txt
[242/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/c91662.swc
[243/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/ca_pump.py
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[245/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/cabuf_fixed_step.py
[246/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_before_sections.py
[247/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_example_cvode.py
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[249/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_include_flux.py
[250/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/ecs_multi_example.py
[251/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/ecs/torun.txt
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[253/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_cvode.py
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[259/1930] Generating share/nrn/lib/python/neuron/rxdtests/tests/hh_param_cvode.py
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   56 | %define parser_class_name {DiffeqParser}
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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   49 | %define parser_class_name {UnitParser}
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
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In file included from /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.hpp:17:
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/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:57:5: warning: delete called on 'nmodl::utils::Blame' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor]
    delete __ptr;
    ^
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      __ptr_.second()(__tmp);
      ^
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  ~unique_ptr() { reset(); }
                  ^
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    auto blame_printer = utils::make_blame(blame_line);
                         ^
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   64 | %define parser_class_name {NmodlParser}
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[517/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Isaac64RNG.cpp.o
[518/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/LogNorm.cpp.o
[519/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/MCellRan4RNG.cpp.o
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[522/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/NegExp.cpp.o
[523/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/nrnisaac.cpp.o
[524/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Normal.cpp.o
[525/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Poisson.cpp.o
[526/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Rand.cpp.o
[527/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Random.cpp.o
[528/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RndInt.cpp.o
[529/1930] [FLEX][modlunitlexer] Building scanner with flex 2.6.4
[530/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RNG.cpp.o
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[532/1930] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Weibull.cpp.o
[533/1930] [FLEX][nocmodllexer] Building scanner with flex 2.6.4
[534/1930] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nmodl/diffeq.ypp: warning: 5 shift/reduce conflicts [-Wconflicts-sr]
../src/nmodl/diffeq.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
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[536/1930] Linking CXX static library lib/libnrngnu.a
[537/1930] [BISON][modlunitparser] Building parser with bison 3.8.2
[538/1930] [BISON][ocparser] Building parser with bison 3.8.2
../src/oc/parse.ypp: warning: 108 shift/reduce conflicts [-Wconflicts-sr]
../src/oc/parse.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[539/1930] Generating ../oc/hocusr.h
[540/1930] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nmodl/parse1.ypp: warning: 3 shift/reduce conflicts [-Wconflicts-sr]
../src/nmodl/parse1.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[541/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/init.cpp.o
[542/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/consist.cpp.o
[543/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/declare.cpp.o
[544/1930] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/json_printer.cpp.o
[545/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/io.cpp.o
[546/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/model.cpp.o
[547/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/kinunit.cpp.o
[548/1930] cd /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[549/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/list.cpp.o
[550/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/nrnunit.cpp.o
[551/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/passn.cpp.o
[552/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/version.cpp.o
[553/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/symbol.cpp.o
[554/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units1.cpp.o
[555/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/lex.cpp.o
[556/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units.cpp.o
[557/1930] Building CXX object external/nmodl/src/pybind/CMakeFiles/pyembed.dir/pyembed.cpp.o
[558/1930] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/parse1.cpp.o
[559/1930] Linking CXX executable bin/modlunit
[560/1930] Building CXX object src/coreneuron/CMakeFiles/coreneuron-core.dir/apps/corenrn_parameters.cpp.o
[561/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/consist.cpp.o
[562/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/discrete.cpp.o
[563/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/deriv.cpp.o
[564/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/init.cpp.o
[565/1930] Linking CXX static library lib/libcoreneuron-core.a
[566/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/kinetic.cpp.o
[567/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/list.cpp.o
[568/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/io.cpp.o
[569/1930] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/logger.cpp.o
[570/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/noccout.cpp.o
[571/1930] Linking CXX static library lib/libutil.a
[572/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/netrec_discon.cpp.o
[573/1930] -- NMODL : GENERATING NMODL LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/nmodl.ll:503: warning, -s option given but default rule can be matched
[574/1930] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! --
[575/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/simultan.cpp.o
[576/1930] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/diffeq.ll:100: warning, -s option given but default rule can be matched
[577/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/solve.cpp.o
[578/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/symbol.cpp.o
[579/1930] -- NMODL : GENERATING C(11) LEXER WITH FLEX! --
[580/1930] -- NMODL : GENERATING UNIT LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched
[581/1930] Linking CXX static library lib/libpyembed.a
[582/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/parsact.cpp.o
[583/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/modlunit/units.cpp.o
[584/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/version.cpp.o
[585/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o
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[587/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/nocpout.cpp.o
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[599/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/diffeq_base_lexer.cpp.o
[600/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/modl.cpp.o
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[603/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_driver.cpp.o
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[631/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/loop_unroll_visitor.cpp.o
[632/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/localize_visitor.cpp.o
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[643/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/units_visitor.cpp.o
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[653/1930] cd /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/src/nrniv && true
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[655/1930] Generating ../../include/nrnmpiuse.h
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[703/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_json.cpp.o
[704/1930] Generating ../nrnoc/apcount.cpp
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Thread Safe
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/expsyn.cpp
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/feature.cpp
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/intfire1.cpp
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/hh.cpp
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/intfire2.cpp
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/intfire4.cpp
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/netstim.cpp
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/passive.cpp
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/oclmp.cpp
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/ppmark.cpp
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/pattern.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/svclmp.cpp
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/stim.cpp
Thread Safe
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Translating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/nrnoc/vclmp.cpp
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[722/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_teamcity.cpp.o
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WARNING: No mod files found in '/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/bin', compiling default ones only!
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
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/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/ivoc/mymath.cpp:2:14: warning: '#pragma FENV_ACCESS' is not supported on this target - ignored [-Wignored-pragmas]
#pragma STDC FENV_ACCESS ON
             ^
1 warning generated.
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[1256/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/gap.mod
[1257/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/follower.mod
[1258/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/name_clashes.mod
[1259/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/unitstest.mod
[1260/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/version_macros.mod
[1261/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod
[1262/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod
[1263/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod
[1264/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod
[1265/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod
[1266/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod
[1267/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod
[1268/1930] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS,CORENRN_BUILD=0
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
Traceback (most recent call last):
  File "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject
    section = defn.get("tool", {})[tool_name]
KeyError: 'setuptools_scm'
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:167: UserWarning: "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:creating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:creating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:creating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/coreneuron_available.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:creating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:creating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:creating /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:building 'neuron.hoc' extension
INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -DCORENRN_BUILD=0=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17
INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../
ld: warning: -undefined dynamic_lookup may not work with chained fixups
INFO:root:running build_scripts
INFO:root:creating build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10
INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755
INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755
INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755
INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755
[1269/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.inc
[1270/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.mod
[1271/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial_pp.mod
[1272/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/bacur.mod
[1273/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/banocur.mod
[1274/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/fornetcon.mod
[1275/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/green.mod
[1276/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/invlfire.mod
[1277/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/natrans.mod
[1278/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/netmove.mod
[1279/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/noisychan.mod
[1280/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/red.mod
[1281/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/sample.mod
[1282/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/unitstest.mod
[1283/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/version_macros.mod
[1284/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange.mod
[1285/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange2.mod
[1286/1930] Building special[-core] for test group datahandle
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453
cfiles =
Mod files: "./opaque_token.mod" "./ptr.mod"

MODOBJS= ./opaque_token.o ./ptr.o
 -> Compiling mod_func.cpp
 -> NMODL .././ptr.mod
 -> NMODL .././opaque_token.mod
Translating opaque_token.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp
Translating ptr.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp
Notice: VERBATIM blocks are not thread safe
Notice: Use of POINTER is not thread safe.
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/./special" LDFLAGS are:     
Successfully created arm64/special
[1287/1930] Generating datahandle/datahandle_tests/test/datahandle/test_1.py
[1288/1930] Generating datahandle/datahandle_tests/test/datahandle/test_token.py
[1289/1930] Linking CXX executable bin/test/hh_sim_cpp
[1290/1930] Linking CXX executable bin/test/netcon_cpp
[1291/1930] Linking CXX executable bin/test/sections_c
[1292/1930] Linking CXX executable bin/test/vclamp_cpp
[1293/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod
[1294/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod
[1295/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod
[1296/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod
[1297/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod
[1298/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod
[1299/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod
[1300/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod
[1301/1930] Building special[-core] for test group coverage_tests
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51
cfiles =
Mod files: "./ppxsrc.mod"

MODOBJS= ./ppxsrc.o
 -> Compiling mod_func.cpp
 -> NMODL .././ppxsrc.mod
Translating ppxsrc.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./special" LDFLAGS are:     
Successfully created arm64/special
[1302/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
[1303/1930] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json
[1304/1930] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py
[1305/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod
[1306/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
[1307/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod
[1308/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
[1309/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod
[1310/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod
[1311/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod
[1312/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod
[1313/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod
[1314/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod
[1315/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod
[1316/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod
[1317/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod
[1318/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod
[1319/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod
[1320/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod
[1321/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod
[1322/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod
[1323/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod
[1324/1930] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod
[1325/1930] Building special[-core] for test group parallel
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"

MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
 -> Compiling mod_func.cpp
 -> NMODL .././follower.mod
 -> NMODL .././name_clashes.mod
 -> NMODL .././gap.mod
 -> NMODL .././unitstest.mod
Translating unitstest.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp
Translating gap.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp
Translating name_clashes.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp
Translating follower.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp
Thread Safe
Thread Safe
 -> NMODL .././version_macros.mod
Thread Safe
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./special" LDFLAGS are:     
Successfully created arm64/special
[1326/1930] Generating parallel/subworld/test/parallel_tests/test_subworld.py
[1327/1930] Generating parallel/partrans/test/pytest_coreneuron/test_partrans.py
[1328/1930] Generating parallel/netpar/test/pytest_coreneuron/test_hoc_po.py
[1329/1930] Generating parallel/netpar/test/pytest_coreneuron/test_netpar.py
[1330/1930] Generating parallel/bas/test/parallel_tests/test_bas.py
[1331/1930] Generating parallel/nrntest_fast/test/pytest_coreneuron/run_pytest.py
[1332/1930] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.json
[1333/1930] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.py
[1334/1930] Generating ../../nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/halfgap.mod
[1335/1930] Building special[-core] for test group pytest
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c
cfiles =
Mod files: "./mcna.mod"

MODOBJS= ./mcna.o
 -> Compiling mod_func.cpp
 -> NMODL .././mcna.mod
Translating mcna.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./special" LDFLAGS are:     
Successfully created arm64/special
[1336/1930] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.json
[1337/1930] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py
[1338/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod
[1339/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod
[1340/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod
[1341/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod
[1342/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod
[1343/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod
[1344/1930] Building special[-core] for test group hoctests
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad
cfiles =
Mod files: "./atest.mod" "./rand.mod" "./rand_art.mod" "./rand_pp.mod" "./sdata.mod" "./sdata_pp.mod" "./sdata_ppts.mod" "./sdata_ts.mod"

MODOBJS= ./atest.o ./rand.o ./rand_art.o ./rand_pp.o ./sdata.o ./sdata_pp.o ./sdata_ppts.o ./sdata_ts.o
 -> Compiling mod_func.cpp
 -> NMODL .././rand.mod
 -> NMODL .././atest.mod
 -> NMODL .././rand_art.mod
 -> NMODL .././rand_pp.mod
Translating atest.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/atest.cpp
Translating rand_art.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_art.cpp
Translating rand.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand.cpp
Translating rand_pp.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_pp.cpp
Thread Safe
Thread Safe
 -> NMODL .././sdata.mod
 -> NMODL .././sdata_pp.mod
Thread Safe
Thread Safe
 -> NMODL .././sdata_ppts.mod
 -> NMODL .././sdata_ts.mod
Translating sdata_ppts.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ppts.cpp
INCLUDEing sdata.inc
Translating sdata_pp.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_pp.cpp
Translating sdata.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata.cpp
Translating sdata_ts.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ts.cpp
Thread Safe
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
INCLUDEing sdata.inc
Notice: VERBATIM blocks are not thread safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/atest.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_art.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_pp.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_pp.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ppts.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ts.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/./special" LDFLAGS are:     
Successfully created arm64/special
[1345/1930] Generating hoctests/test_loadbal_hoc/expect_err.hoc
[1346/1930] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc
[1347/1930] Generating hoctests/test_random_hoc/expect_err.hoc
[1348/1930] Generating hoctests/test_random_hoc/tests/test_random.hoc
[1349/1930] Generating hoctests/test_random_hoc/tests/test_random.json
[1350/1930] Generating hoctests/perf1_hoc/expect_err.hoc
[1351/1930] Building special[-core] for test group nmodl_tests
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5
cfiles =
Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod"

MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o
 -> Compiling mod_func.cpp
 -> NMODL .././disc.mod
 -> NMODL .././cadif.mod
 -> NMODL .././fornetcon.mod
 -> NMODL .././hhwatch.mod
Translating fornetcon.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp
Translating cadif.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp
Translating hhwatch.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp
Translating disc.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp
Notice: DISCRETE is not thread safe.
Notice: This mechanism cannot be used with CVODE
Thread Safe
Thread Safe
 -> NMODL .././table.mod
 -> NMODL .././k3st.mod
 -> NMODL .././variabletypes.mod
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp
Translating k3st.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp
NEURON's CVode method ignores conservation
Translating table.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp
Thread Safe
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp
Translating variabletypes.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/./special" LDFLAGS are:     
Successfully created arm64/special
[1352/1930] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc
[1353/1930] Generating hoctests/test1_hoc/expect_err.hoc
[1354/1930] Generating hoctests/test1_hoc/vardimtests/test1.hoc
[1355/1930] Generating hoctests/test2_hoc/expect_err.hoc
[1356/1930] Generating hoctests/test2_hoc/vardimtests/test2.hoc
[1357/1930] Generating hoctests/test3_hoc/expect_err.hoc
[1358/1930] Generating hoctests/test3_hoc/vardimtests/test3.hoc
[1359/1930] Generating hoctests/test4_hoc/expect_err.hoc
[1360/1930] Generating hoctests/test4_hoc/vardimtests/test4.hoc
[1361/1930] Generating hoctests/test5_hoc/expect_err.hoc
[1362/1930] Generating hoctests/test5_hoc/vardimtests/test5.hoc
[1363/1930] Generating hoctests/test6_hoc/expect_err.hoc
[1364/1930] Generating hoctests/test6_hoc/vardimtests/test6.hoc
[1365/1930] Generating hoctests/test7_hoc/expect_err.hoc
[1366/1930] Generating hoctests/test7_hoc/vardimtests/test7.hoc
[1367/1930] Generating hoctests/test8_hoc/expect_err.hoc
[1368/1930] Generating hoctests/test8_hoc/vardimtests/test8.hoc
[1369/1930] Generating hoctests/test9_hoc/expect_err.hoc
[1370/1930] Generating hoctests/test9_hoc/vardimtests/test9.hoc
[1371/1930] Generating hoctests/test_bbss_py/tests/test_bbss.py
[1372/1930] Generating hoctests/test_cvinterp_py/tests/test_cvinterp.py
[1373/1930] Generating hoctests/test_hocGUI2_py/tests/test_hocGUI2.py
[1374/1930] Generating hoctests/test_hocmech_py/tests/test_hocmech.py
[1375/1930] Generating hoctests/test_kschan_py/tests/test_kschan.json
[1376/1930] Generating hoctests/test_kschan_py/tests/test_kschan.py
[1377/1930] Generating hoctests/test_legacy_setpointer_py/tests/test_legacy_setpointer.py
[1378/1930] Generating hoctests/test_mechfunc_py/tests/test_mechfunc.py
[1379/1930] Generating hoctests/test_mechstd_py/tests/test_mechstd.py
[1380/1930] Generating hoctests/test_mode_py/tests/test_mode.py
[1381/1930] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json
[1382/1930] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py
[1383/1930] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py
[1384/1930] Generating hoctests/test_optim_node_order_py/tests/test_optim_node_order.json
[1385/1930] Generating hoctests/test_optim_node_order_py/tests/test_optim_node_order.py
[1386/1930] Generating hoctests/test_random_py/tests/test_random.json
[1387/1930] Generating hoctests/test_random_py/tests/test_random.py
[1388/1930] Generating hoctests/test_setdata_py/tests/test_setdata.py
[1389/1930] Generating hoctests/test_shape_py/tests/test_shape.py
[1390/1930] Generating hoctests/test_thread_partition_py/tests/test_thread_partition.py
[1391/1930] Generating hoctests/test1_py/vardimtests/test1.py
[1392/1930] Generating hoctests/test2_py/vardimtests/test2.py
[1393/1930] Generating hoctests/test9_py/vardimtests/test9.py
[1394/1930] Generating nmodl_tests/test_table/test/nmodl/test_table.py
[1395/1930] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py
[1396/1930] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py
[1397/1930] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py
[1398/1930] Generating nmodl_tests/test_random/test/nmodl/test_random.py
[1399/1930] Generating nmodl_tests/test_path_spaces/test/nmodl/Project Path Space/test.mod
[1400/1930] Generating nmodl_tests/test_path_spaces/test/nmodl/Project Path Space/test.py
[1401/1930] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py
[1402/1930] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py
[1403/1930] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py
[1404/1930] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py
[1405/1930] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfire.mod
[1406/1930] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfiresha.mod
[1407/1930] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfirestats.mod
[1408/1930] Building special[-core] for test group pytest_coreneuron
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"

MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././follower.mod
 -> NMODL .././name_clashes.mod
 -> NMODL .././gap.mod
Translating name_clashes.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp
Translating gap.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp
Thread Safe
 -> NMODL .././unitstest.mod
Thread Safe
Translating follower.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp
Thread Safe
 -> NMODL .././version_macros.mod
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp
Thread Safe
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/./special" LDFLAGS are:     
Successfully created arm64/special
[1409/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/gui_pycallobject.py
[1410/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/run_pytest.py
[1411/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_a_neuronoptions.py
[1412/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py
[1413/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_coreneuron_configuration.py
[1414/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_bbss.py
[1415/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_hoc_po.py
[1416/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_fast_imem.py
[1417/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_imem.py
[1418/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_inheritance.py
[1419/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_loadbal.py
[1420/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_memory_usage.py
[1421/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_multigid.py
[1422/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_netpar.py
[1423/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nlayer.py
[1424/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrnste.py
[1425/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.json
[1426/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.py
[1427/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_partrans.py
[1428/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_py2nrnstring.py
[1429/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pycallobject.py
[1430/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pyobj.py
[1431/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_swc.py
[1432/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_template_err.py
[1433/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_vector_api.py
[1434/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_version_macros.py
[1435/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_zptrlist.py
[1436/1930] Building special[-core] for test group external_ringtest_nrn
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295
cfiles =
Mod files: "./halfgap.mod"

MODOBJS= ./halfgap.o
 -> Compiling mod_func.cpp
 -> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/halfgap.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/halfgap.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/./special" LDFLAGS are:     
Successfully created arm64/special
[1437/1930] Generating ../../external_ringtest_nrn/optim_node_order/args.py
[1438/1930] Generating ../../external_ringtest_nrn/optim_node_order/cell.hoc
[1439/1930] Generating ../../external_ringtest_nrn/optim_node_order/celluniform.hoc
[1440/1930] Generating ../../external_ringtest_nrn/optim_node_order/commonutils.py
[1441/1930] Generating ../../external_ringtest_nrn/optim_node_order/ranparm.py
[1442/1930] Generating ../../external_ringtest_nrn/optim_node_order/ring.py
[1443/1930] Generating ../../external_ringtest_nrn/optim_node_order/ringtest.py
[1444/1930] Generating ../../external_ringtest_nrn/optim_node_order/ringuniform.py
[1445/1930] Generating ../../external_ringtest_nrn/optim_node_order/settings.py
[1446/1930] Generating ../../external_ringtest_nrn/optim_node_order/test_optimize_node_order.py
[1447/1930] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"

MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o
 -> Compiling mod_func.cpp
 -> NMODL ../cachan1.mod
 -> NMODL ../cabpump.mod
 -> NMODL ../camchan.mod
 -> NMODL ../capump.mod
Translating capump.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
Thread Safe
Translating cachan1.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Translating cabpump.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
 -> NMODL ../invlfire.mod
Translating camchan.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
Thread Safe
Thread Safe
 -> NMODL ../khhchan.mod
 -> NMODL ../nacaex.mod
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL ../nachan.mod
Translating invlfire.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
Translating khhchan.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
Thread Safe
 -> NMODL ../release.mod
Translating nachan.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
Thread Safe
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
Translating nacaex.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
Translating release.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/./special" LDFLAGS are:     
Successfully created arm64/special
[1448/1930] Building special[-core] for test group external_ringtest
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff
cfiles =
Mod files: "./halfgap.mod"

MODOBJS= ./halfgap.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/./special" LDFLAGS are:     
Successfully created arm64/special
[1449/1930] Generating ../../external_ringtest/neuron/args.py
[1450/1930] Generating ../../external_ringtest/neuron/cell.hoc
[1451/1930] Generating ../../external_ringtest/neuron/commonutils.py
[1452/1930] Generating ../../external_ringtest/neuron/ranparm.py
[1453/1930] Generating ../../external_ringtest/neuron/celluniform.hoc
[1454/1930] Generating ../../external_ringtest/neuron/ring.py
[1455/1930] Generating ../../external_ringtest/neuron/ringtest.py
[1456/1930] Generating ../../external_ringtest/neuron/test_optimize_node_order.py
[1457/1930] Generating ../../external_ringtest/neuron/ringuniform.py
[1458/1930] Generating ../../external_ringtest/neuron/settings.py
[1459/1930] Generating ../../external_ringtest/neuron_mpi/args.py
[1460/1930] Generating ../../external_ringtest/neuron_mpi/cell.hoc
[1461/1930] Generating ../../external_ringtest/neuron_mpi/commonutils.py
[1462/1930] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc
[1463/1930] Generating ../../external_ringtest/neuron_mpi/ranparm.py
[1464/1930] Generating ../../external_ringtest/neuron_mpi/ring.py
[1465/1930] Generating ../../external_ringtest/neuron_mpi/ringtest.py
[1466/1930] Generating ../../external_ringtest/neuron_mpi/ringuniform.py
[1467/1930] Generating ../../external_ringtest/neuron_mpi/settings.py
[1468/1930] Generating ../../external_ringtest/neuron_mpi/test_optimize_node_order.py
[1469/1930] Generating ../../external_ringtest/neuron_mpi_python/args.py
[1470/1930] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc
[1471/1930] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py
[1472/1930] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc
[1473/1930] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py
[1474/1930] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py
[1475/1930] Generating ../../external_ringtest/neuron_mpi_python/ring.py
[1476/1930] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py
[1477/1930] Generating ../../external_ringtest/neuron_mpi_python/settings.py
[1478/1930] Generating ../../external_ringtest/neuron_mpi_python/test_optimize_node_order.py
[1479/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc
[1480/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py
[1481/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc
[1482/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py
[1483/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py
[1484/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py
[1485/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py
[1486/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py
[1487/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py
[1488/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/test_optimize_node_order.py
[1489/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py
[1490/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc
[1491/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc
[1492/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py
[1493/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py
[1494/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/test_optimize_node_order.py
[1495/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py
[1496/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py
[1497/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py
[1498/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py
[1499/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py
[1500/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc
[1501/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc
[1502/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py
[1503/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py
[1504/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py
[1505/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py
[1506/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py
[1507/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/test_optimize_node_order.py
[1508/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py
[1509/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc
[1510/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py
[1511/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py
[1512/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc
[1513/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py
[1514/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py
[1515/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py
[1516/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py
[1517/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py
[1518/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/test_optimize_node_order.py
[1519/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py
[1520/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc
[1521/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py
[1522/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc
[1523/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py
[1524/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py
[1525/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/test_optimize_node_order.py
[1526/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py
[1527/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py
[1528/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py
[1529/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py
[1530/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc
[1531/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/celluniform.hoc
[1532/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py
[1533/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py
[1534/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py
[1535/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py
[1536/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py
[1537/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py
[1538/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/args.py
[1539/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/test_optimize_node_order.py
[1540/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/cell.hoc
[1541/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ranparm.py
[1542/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/celluniform.hoc
[1543/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/commonutils.py
[1544/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ring.py
[1545/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ringtest.py
[1546/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ringuniform.py
[1547/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/settings.py
[1548/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/test_optimize_node_order.py
[1549/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/cell.hoc
[1550/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/celluniform.hoc
[1551/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/args.py
[1552/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ranparm.py
[1553/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/commonutils.py
[1554/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ring.py
[1555/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ringtest.py
[1556/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ringuniform.py
[1557/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/settings.py
[1558/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/test_optimize_node_order.py
[1559/1930] Building special[-core] for test group tqperf
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951
cfiles =
Mod files: "./invlfire.mod" "./invlfiresha.mod" "./invlfirestats.mod"

MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build INCFLAGS=-I/opt/homebrew/Cellar/openssl@3/3.2.0_1/include LINKFLAGS=/opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
arm64/corenrn/mod2c/invlfiresha.cpp:313:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Init((SHA_CTX*)(*ctx));
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
arm64/corenrn/mod2c/invlfiresha.cpp:318:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Update((SHA_CTX*)ctx, data, len);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
arm64/corenrn/mod2c/invlfiresha.cpp:329:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Final(u.md, (SHA_CTX*)ctx);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
3 warnings generated.
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././invlfire.mod
 -> NMODL .././invlfiresha.mod
 -> NMODL .././invlfirestats.mod
Translating invlfirestats.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating invlfire.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp
Translating invlfiresha.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:371:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Init((SHA_CTX*)(*ctx));
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:376:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Update((SHA_CTX*)ctx, data, len);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:387:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Final(u.md, (SHA_CTX*)ctx);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
3 warnings generated.
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/./special" LDFLAGS are:    /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib 
Successfully created arm64/special
[1560/1930] Generating ../../tqperf/coreneuron_special/init.hoc
[1561/1930] Generating ../../tqperf/coreneuron_special/extracell.hoc
[1562/1930] Generating ../../tqperf/coreneuron_special/mosinit.hoc
[1563/1930] Generating ../../tqperf/coreneuron_special/invl.hoc
[1564/1930] Generating ../../tqperf/coreneuron_special/net.hoc
[1565/1930] Generating ../../tqperf/coreneuron_special/movie.hoc
[1566/1930] Generating ../../tqperf/coreneuron_special/pltq.hoc
[1567/1930] Generating ../../tqperf/coreneuron_special/perfrun.hoc
[1568/1930] Generating ../../tqperf/coreneuron_special/randist.hoc
[1569/1930] Generating ../../tqperf/coreneuron_special/run128.hoc
[1570/1930] Generating ../../tqperf/coreneuron_special/param.hoc
[1571/1930] Generating ../../tqperf/coreneuron_special/run.hoc
[1572/1930] Generating ../../tqperf/coreneuron_special/runs.hoc
[1573/1930] Generating ../../tqperf/coreneuron_special/table.hoc
[1574/1930] Generating ../../tqperf/coreneuron_special/test1.py
[1575/1930] Generating ../../tqperf/coreneuron_special/spkplt.hoc
[1576/1930] Generating ../../tqperf/coreneuron_special/spike2file.hoc
[1577/1930] Generating ../../tqperf/coreneuron_special/tperfnew.hoc
[1578/1930] Generating ../../tqperf/coreneuron_special/tperf.hoc
[1579/1930] Generating ../../tqperf/coreneuron_python/extracell.hoc
[1580/1930] Generating ../../tqperf/coreneuron_python/invl.hoc
[1581/1930] Generating ../../tqperf/coreneuron_python/init.hoc
[1582/1930] Generating ../../tqperf/coreneuron_python/mosinit.hoc
[1583/1930] Generating ../../tqperf/coreneuron_python/net.hoc
[1584/1930] Generating ../../tqperf/coreneuron_python/movie.hoc
[1585/1930] Generating ../../tqperf/coreneuron_python/param.hoc
[1586/1930] Generating ../../tqperf/coreneuron_python/pltq.hoc
[1587/1930] Generating ../../tqperf/coreneuron_python/perfrun.hoc
[1588/1930] Generating ../../tqperf/coreneuron_python/randist.hoc
[1589/1930] Generating ../../tqperf/coreneuron_python/run.hoc
[1590/1930] Generating ../../tqperf/coreneuron_python/runs.hoc
[1591/1930] Generating ../../tqperf/coreneuron_python/run128.hoc
[1592/1930] Generating ../../tqperf/coreneuron_python/spike2file.hoc
[1593/1930] Generating ../../tqperf/coreneuron_python/tperfnew.hoc
[1594/1930] Generating ../../tqperf/coreneuron_python/table.hoc
[1595/1930] Generating ../../tqperf/coreneuron_python/spkplt.hoc
[1596/1930] Generating ../../tqperf/coreneuron_python/test1.py
[1597/1930] Generating ../../tqperf/coreneuron_python/tperf.hoc
[1598/1930] Building special[-core] for test group testcorenrn_bbcore
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876
cfiles =
Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod"

MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././Gfluct3.mod
 -> NMODL .././hhderiv.mod
 -> NMODL .././hhkin.mod
Translating Gfluct3.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp
Translating hhkin.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp
Thread Safe
Thread Safe
Translating hhderiv.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp
Thread Safe
 -> NMODL .././hhwatch.mod
 -> NMODL .././nacum.mod
 -> NMODL .././vecevent.mod
Translating nacum.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp
Translating hhwatch.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp
Thread Safe
Thread Safe
Translating vecevent.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/./special" LDFLAGS are:     
Successfully created arm64/special
[1599/1930] Generating ../../testcorenrn_bbcore/neuron/common.hoc
[1600/1930] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc
[1601/1930] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc
[1602/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc
[1603/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc
[1604/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc
[1605/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc
[1606/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1607/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc
[1608/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc
[1609/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc
[1610/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc
[1611/1930] Generating ../../testcorenrn_conc/neuron/common.hoc
[1612/1930] Generating ../../testcorenrn_conc/neuron/defvar.hoc
[1613/1930] Generating ../../testcorenrn_conc/neuron/testconc.hoc
[1614/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc
[1615/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc
[1616/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc
[1617/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc
[1618/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1619/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc
[1620/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc
[1621/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc
[1622/1930] Generating ../../testcorenrn_deriv/neuron/common.hoc
[1623/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc
[1624/1930] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc
[1625/1930] Generating ../../testcorenrn_deriv/neuron/defvar.hoc
[1626/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc
[1627/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc
[1628/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc
[1629/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1630/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc
[1631/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc
[1632/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc
[1633/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc
[1634/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc
[1635/1930] Generating ../../testcorenrn_gf/neuron/defvar.hoc
[1636/1930] Generating ../../testcorenrn_gf/neuron/common.hoc
[1637/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc
[1638/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc
[1639/1930] Generating ../../testcorenrn_gf/neuron/testgf.hoc
[1640/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc
[1641/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc
[1642/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1643/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc
[1644/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc
[1645/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc
[1646/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc
[1647/1930] Generating ../../testcorenrn_kin/neuron/common.hoc
[1648/1930] Generating ../../testcorenrn_kin/neuron/defvar.hoc
[1649/1930] Generating ../../testcorenrn_kin/neuron/testkin.hoc
[1650/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc
[1651/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc
[1652/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc
[1653/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1654/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc
[1655/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc
[1656/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc
[1657/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc
[1658/1930] Generating ../../testcorenrn_patstim/neuron/common.hoc
[1659/1930] Generating ../../testcorenrn_patstim/neuron/defvar.hoc
[1660/1930] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc
[1661/1930] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc
[1662/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc
[1663/1930] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc
[1664/1930] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc
[1665/1930] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc
[1666/1930] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc
[1667/1930] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc
[1668/1930] Generating ../../testcorenrn_vecplay/neuron/common.hoc
[1669/1930] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc
[1670/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc
[1671/1930] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc
[1672/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc
[1673/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc
[1674/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1675/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc
[1676/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc
[1677/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc
[1678/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc
[1679/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc
[1680/1930] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc
[1681/1930] Generating ../../testcorenrn_vecevent/neuron/common.hoc
[1682/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc
[1683/1930] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc
[1684/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc
[1685/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1686/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc
[1687/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc
[1688/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc
[1689/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc
[1690/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc
[1691/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc
[1692/1930] Generating ../../testcorenrn_watch/neuron/common.hoc
[1693/1930] Generating ../../testcorenrn_watch/neuron/defvar.hoc
[1694/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc
[1695/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc
[1696/1930] Generating ../../testcorenrn_watch/neuron/testwatch.hoc
[1697/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc
[1698/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc
[1699/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc
[1700/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc
[1701/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1702/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc
[1703/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc
[1704/1930] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc
[1705/1930] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc
[1706/1930] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc
[1707/1930] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc
[1708/1930] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc
[1709/1930] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc
[1710/1930] Building special[-core] for test group coreneuron_modtests
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7
cfiles =
Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./green.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./noisychan.mod" "./red.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod" "./watchrange2.mod"

MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./green.o ./invlfire.o ./natrans.o ./netmove.o ./noisychan.o ./red.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o ./watchrange2.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././axial.mod
 -> NMODL .././axial_pp.mod
 -> NMODL .././bacur.mod
Translating bacur.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/bacur.cpp
Thread Safe
Translating axial_pp.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial_pp.cpp
INCLUDEing axial.inc
Thread Safe
 -> NMODL .././banocur.mod
Translating axial.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial.cpp
INCLUDEing axial.inc
Thread Safe
 -> NMODL .././fornetcon.mod
 -> NMODL .././green.mod
Translating fornetcon.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/fornetcon.cpp
Thread Safe
Translating banocur.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/banocur.cpp
Translating green.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/green.cpp
Warning: dt undefined. (declared within VERBATIM?)
Thread Safe
Notice: This mechanism cannot be used with CVODE
Thread Safe
 -> NMODL .././invlfire.mod
 -> NMODL .././natrans.mod
 -> NMODL .././netmove.mod
Translating natrans.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/natrans.cpp
Thread Safe
Translating invlfire.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/invlfire.cpp
Thread Safe
Translating netmove.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/netmove.cpp
Thread Safe
 -> NMODL .././noisychan.mod
 -> NMODL .././red.mod
 -> NMODL .././sample.mod
Translating sample.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/sample.cpp
Thread Safe
Translating noisychan.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/noisychan.cpp
Translating red.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/red.cpp
Thread Safe
Thread Safe
 -> NMODL .././unitstest.mod
 -> NMODL .././version_macros.mod
 -> NMODL .././watchrange.mod
Translating version_macros.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/version_macros.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/unitstest.cpp
Thread Safe
Translating watchrange.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange.cpp
Thread Safe
Thread Safe
 -> NMODL .././watchrange2.mod
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial_pp.cpp
Translating watchrange2.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange2.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/bacur.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/banocur.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/fornetcon.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/green.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/invlfire.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/natrans.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/netmove.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/noisychan.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/red.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/sample.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/unitstest.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/version_macros.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange2.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/./special" LDFLAGS are:     
Successfully created arm64/special
[1711/1930] Generating coreneuron_modtests/version_macros/test/pytest_coreneuron/test_version_macros.py
[1712/1930] Generating coreneuron_modtests/inputpresyn_py/test/coreneuron/test_inputpresyn.py
[1713/1930] Generating coreneuron_modtests/fornetcon_py_cpu/test/coreneuron/test_fornetcon.py
[1714/1930] Generating coreneuron_modtests/direct_py_cpu/test/coreneuron/test_direct.py
[1715/1930] Generating coreneuron_modtests/direct_hoc_cpu/test/coreneuron/test_direct.hoc
[1716/1930] Generating coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.py
[1717/1930] Generating coreneuron_modtests/datareturn_py_cpu/test/coreneuron/test_datareturn.py
[1718/1930] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1719/1930] Generating coreneuron_modtests/fast_imem_py_cpu/test/pytest_coreneuron/test_fast_imem.py
[1720/1930] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py
[1721/1930] Generating coreneuron_modtests/test_units_py_cpu/test/coreneuron/test_units.py
[1722/1930] Generating coreneuron_modtests/test_pointer_py_cpu/test/coreneuron/test_pointer.py
[1723/1930] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py
[1724/1930] Generating coreneuron_modtests/test_psolve_py_cpu/test/coreneuron/test_psolve.py
[1725/1930] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py
[1726/1930] Generating coreneuron_modtests/test_nmodlrandom_py_cpu/test/coreneuron/test_nmodlrandom.py
[1727/1930] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py
[1728/1930] Generating coreneuron_modtests/test_nmodlrandom_syntax_py_cpu/test/coreneuron/test_nmodlrandom_syntax.py
[1729/1930] Generating coreneuron_modtests/array_variable_transfer_run_mode_0_py_cpu/test/coreneuron/test_array_variables_transfer.py
[1730/1930] Generating coreneuron_modtests/array_variable_transfer_file_mode_py_cpu/test/coreneuron/test_array_variables_transfer.py
[1731/1930] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1732/1930] Generating coreneuron_modtests/array_variable_transfer_run_mode_1_py_cpu/test/coreneuron/test_array_variables_transfer.py
[1733/1930] Generating coreneuron_modtests/array_variable_transfer_run_mode_2_py_cpu/test/coreneuron/test_array_variables_transfer.py
[1734/1930] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py
[1735/1930] Building special[-core] for test group example_nmodl
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2
cfiles =
Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod"

MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o
 -> NMODL .././cabpump.mod
 -> Compiling mod_func.cpp
 -> NMODL .././argpass.mod
 -> NMODL .././cachan.mod
 -> NMODL .././cacum.mod
Translating argpass.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp
Translating cachan.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp
Translating cabpump.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp
Translating cacum.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././cacur.mod
Thread Safe
Thread Safe
 -> NMODL .././cadif.mod
 -> NMODL .././cadifusl.mod
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL .././cagk.mod
Translating cagk.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp
Translating cadif.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp
Translating cacur.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp
Thread Safe
Thread Safe
 -> NMODL .././cagkftab.mod
 -> NMODL .././capmp.mod
Thread Safe
Translating cadifusl.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp
 -> NMODL .././expsynspine.mod
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL .././fh.mod
Translating fh.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp
INCLUDEing standard.inc
Notice: Assignment to the GLOBAL variable, "inf", is not thread safe
Notice: Assignment to the GLOBAL variable, "tau", is not thread safe
Translating expsynspine.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp
Notice: LINEAR is not thread safe.
Translating capmp.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp
Translating cagkftab.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp
 -> NMODL .././fit1.mod
NEURON's CVode method ignores conservation
Thread Safe
Thread Safe
 -> NMODL .././gap.mod
 -> NMODL .././hh1.mod
 -> NMODL .././hhvect.mod
Translating gap.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp
Notice: Use of POINTER is not thread safe.
Translating hh1.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp
Notice: This mechanism cannot be used with CVODE
Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe
Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "minf", is not thread safe
Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
 -> NMODL .././inatest.mod
Translating fit1.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././ionleak.mod
Translating hhvect.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
 -> NMODL .././nacum.mod
 -> NMODL .././nacur.mod
Translating nacum.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp
Thread Safe
 -> NMODL .././nadifl.mod
Translating nacur.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp
Thread Safe
Translating inatest.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp
Thread Safe
 -> NMODL .././nonlin.mod
Translating ionleak.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp
Thread Safe
 -> NMODL .././obj_ex.mod
 -> NMODL .././order.mod
Translating nadifl.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp
Thread Safe
 -> NMODL .././passiv.mod
Translating nonlin.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp
Notice: NONLINEAR is not thread safe.
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Translating obj_ex.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp
Thread Safe
 -> NMODL .././rchan.mod
 -> NMODL .././stim1.mod
Translating order.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp
Thread Safe
 -> NMODL .././str.mod
Translating passiv.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp
Thread Safe
 -> NMODL .././syn1.mod
Translating rchan.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp
Notice: normrand is not thread safe
Notice: This mechanism cannot be used with CVODE
Translating stim1.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp
Thread Safe
 -> NMODL .././synpre.mod
 -> NMODL .././trivial.mod
Translating str.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp
Notice: VERBATIM blocks are not thread safe
Translating syn1.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp
Thread Safe
 -> NMODL .././tstdarray.mod
 -> NMODL .././tstextrn.mod
Translating trivial.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp
Translating synpre.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././tstpnt1.mod
 -> NMODL .././tstpnt2.mod
Translating tstpnt1.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp
Notice: Use of POINTER is not thread safe.
Translating tstextrn.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp
Notice: Use of EXTERNAL is not thread safe.
Translating tstdarray.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp
Thread Safe
 -> NMODL .././tstvec.mod
 -> NMODL .././vclmp1.mod
 -> NMODL .././vlag.mod
Translating tstpnt2.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp
Notice: Use of POINTER is not thread safe.
Translating vlag.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp
Translating vclmp1.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
Notice: LINEAR is not thread safe.
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp
Translating tstvec.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp
Notice: VERBATIM blocks are not thread safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/./special" LDFLAGS are:     
Successfully created arm64/special
[1736/1930] Generating example_nmodl/cachan_hoc/cachan.hoc
[1737/1930] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc
[1738/1930] Generating example_nmodl/cadif_hoc/cadif.hoc
[1739/1930] Generating example_nmodl/cabpump_hoc/cabpump.hoc
[1740/1930] Generating example_nmodl/cadif_hoc/cadif.ses
[1741/1930] Generating example_nmodl/cadifusl2_hoc/cadifusl2.hoc
[1742/1930] Generating example_nmodl/cadifusl1_hoc/cadifusl1.hoc
[1743/1930] Generating example_nmodl/cagk_hoc/cagk.hoc
[1744/1930] Generating example_nmodl/cadifusl_hoc/cadifusl.hoc
[1745/1930] Generating example_nmodl/capmp_hoc/capmp.hoc
[1746/1930] Generating example_nmodl/cv_hoc/cv.hoc
[1747/1930] Generating example_nmodl/fh_hoc/fh.hoc
[1748/1930] Generating example_nmodl/fit1_hoc/fit1.hoc
[1749/1930] Generating example_nmodl/gap_hoc/gap.hoc
[1750/1930] Generating example_nmodl/hh1_hoc/hh1.hoc
[1751/1930] Generating example_nmodl/nacum_hoc/nacum.hoc
[1752/1930] Generating example_nmodl/hhvect_hoc/hhvect.hoc
[1753/1930] Generating example_nmodl/nadifl1_hoc/nadifl1.hoc
[1754/1930] Generating example_nmodl/nadifl1_hoc/nadifl1.ses
[1755/1930] Generating example_nmodl/nadifl2_hoc/nadifl2.hoc
[1756/1930] Generating example_nmodl/nadifl2_hoc/nadifl2.ses
[1757/1930] Generating example_nmodl/nadifl3_hoc/nadifl3.hoc
[1758/1930] Generating example_nmodl/obj_ex_hoc/obj_ex.hoc
[1759/1930] Generating example_nmodl/nadifl3_hoc/nadifl3.ses
[1760/1930] Generating example_nmodl/nadifl4_hoc/nadifl4.hoc
[1761/1930] Generating example_nmodl/nadifl4_hoc/nadifl4.ses
[1762/1930] Generating example_nmodl/order_hoc/order.hoc
[1763/1930] Generating example_nmodl/stim1_hoc/stim1.hoc
[1764/1930] Generating example_nmodl/passiv_hoc/passiv.hoc
[1765/1930] Generating example_nmodl/syn1_hoc/syn1.hoc
[1766/1930] Generating example_nmodl/synpre_hoc/synpre.hoc
[1767/1930] Generating example_nmodl/tstvec_hoc/tstvec.hoc
[1768/1930] Generating example_nmodl/tstpnt1_hoc/tstpnt1.hoc
[1769/1930] Generating example_nmodl/expsynspine_py/expsynspine.ses
[1770/1930] Generating example_nmodl/tstextrn_hoc/tstextrn.hoc
[1771/1930] Generating example_nmodl/tstpnt2_hoc/tstpnt2.hoc
[1772/1930] Generating example_nmodl/expsynspine_py/expsynspine.py
[1773/1930] Generating example_nmodl/cagkftab_py/cagkftab.py
[1774/1930] Generating example_nmodl/tstpnt1_py/tstpnt1.py
[1775/1930] Generating example_nmodl/nonlin_py/nonlin.py
[1776/1930] Generating example_nmodl/tstpnt2_py/tstpnt2.py
[1777/1930] Generating example_nmodl/vlag_py/vlag.py
[1778/1930] Building special[-core] for test group reduced_dentate
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead
cfiles =
Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod"

MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags: 
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././Aradi_Ca.mod
 -> NMODL .././Aradi_CadepK.mod
 -> NMODL .././Aradi_KA.mod
Translating Aradi_KA.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp
Thread Safe
Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp
Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp
Thread Safe
Thread Safe
 -> NMODL .././Aradi_KDRf.mod
 -> NMODL .././Aradi_KDRs.mod
 -> NMODL .././Aradi_Na.mod
Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp
Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp
Thread Safe
Thread Safe
Translating Aradi_Na.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp
 -> NMODL .././CaBK.mod
 -> NMODL .././DGC_M.mod
Thread Safe
 -> NMODL .././DGC_UK.mod
Translating CaBK.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp
Translating DGC_M.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp
Thread Safe
Thread Safe
 -> NMODL .././DGC_sAHP.mod
Translating DGC_UK.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp
 -> NMODL .././Gfluct3.mod
Thread Safe
 -> NMODL .././LcaMig.mod
Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp
Thread Safe
Translating Gfluct3.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp
Thread Safe
 -> NMODL .././SH_KIn.mod
Translating LcaMig.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp
Thread Safe
 -> NMODL .././SH_na8st.mod
 -> NMODL .././bgka.mod
Translating SH_KIn.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp
Thread Safe
Translating SH_na8st.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp
NEURON's CVode method ignores conservation
Thread Safe
 -> NMODL .././ccanl.mod
 -> NMODL .././ggap.mod
Translating bgka.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp
Thread Safe
 -> NMODL .././gskch.mod
Translating ggap.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp
Thread Safe
Translating ccanl.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp
 -> NMODL .././holdingi.mod
Thread Safe
 -> NMODL .././hyperde3.mod
 -> NMODL .././ichan2.mod
Translating gskch.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp
Thread Safe
 -> NMODL .././iconc_Ca.mod
Translating holdingi.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp
Thread Safe
Translating hyperde3.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp
Thread Safe
 -> NMODL .././kcaPR.mod
Translating ichan2.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp
Thread Safe
 -> NMODL .././na3n.mod
Translating iconc_Ca.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp
 -> NMODL .././nca.mod
Thread Safe
 -> NMODL .././spines.mod
Translating kcaPR.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp
Thread Safe
Translating na3n.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp
Thread Safe
 -> NMODL .././tca.mod
Translating nca.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp
 -> NMODL .././vecevent.mod
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp
Translating spines.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp
Thread Safe
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp
Translating tca.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp
Thread Safe
Translating vecevent.mod into /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp
 -> Compiling /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp
 => LINKING shared library "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/./libnrnmech.dylib"
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/./special" LDFLAGS are:     
Successfully created arm64/special
[1779/1930] Generating ../../reduced_dentate/neuron/commonutils.py
[1780/1930] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat
[1781/1930] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat
[1782/1930] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat
[1783/1930] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat
[1784/1930] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat
[1785/1930] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat
[1786/1930] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat
[1787/1930] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat
[1788/1930] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat
[1789/1930] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat
[1790/1930] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat
[1791/1930] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat
[1792/1930] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat
[1793/1930] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat
[1794/1930] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat
[1795/1930] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat
[1796/1930] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat
[1797/1930] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat
[1798/1930] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat
[1799/1930] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat
[1800/1930] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat
[1801/1930] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat
[1802/1930] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat
[1803/1930] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat
[1804/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat
[1805/1930] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat
[1806/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat
[1807/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat
[1808/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat
[1809/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat
[1810/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat
[1811/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat
[1812/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat
[1813/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat
[1814/1930] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat
[1815/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat
[1816/1930] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat
[1817/1930] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat
[1818/1930] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat
[1819/1930] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat
[1820/1930] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat
[1821/1930] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat
[1822/1930] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat
[1823/1930] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat
[1824/1930] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat
[1825/1930] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat
[1826/1930] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat
[1827/1930] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat
[1828/1930] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat
[1829/1930] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat
[1830/1930] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat
[1831/1930] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat
[1832/1930] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat
[1833/1930] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat
[1834/1930] Generating ../../reduced_dentate/neuron/lib.hoc
[1835/1930] Generating ../../reduced_dentate/neuron/main.hoc
[1836/1930] Generating ../../reduced_dentate/neuron/parameters/Control.hoc
[1837/1930] Generating ../../reduced_dentate/neuron/run.hoc
[1838/1930] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc
[1839/1930] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc
[1840/1930] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc
[1841/1930] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc
[1842/1930] Generating ../../reduced_dentate/neuron/templates/Dict.hoc
[1843/1930] Generating ../../reduced_dentate/neuron/templates/DGC.hoc
[1844/1930] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc
[1845/1930] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc
[1846/1930] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc
[1847/1930] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc
[1848/1930] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc
[1849/1930] Generating ../../reduced_dentate/neuron/templates/Value.hoc
[1850/1930] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc
[1851/1930] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc
[1852/1930] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc
[1853/1930] Generating ../../reduced_dentate/neuron/templates/defvar.hoc
[1854/1930] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc
[1855/1930] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py
[1856/1930] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat
[1857/1930] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat
[1858/1930] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat
[1859/1930] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat
[1860/1930] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat
[1861/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat
[1862/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat
[1863/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat
[1864/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat
[1865/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat
[1866/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat
[1867/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat
[1868/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat
[1869/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat
[1870/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat
[1871/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat
[1872/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat
[1873/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat
[1874/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat
[1875/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat
[1876/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat
[1877/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat
[1878/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat
[1879/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat
[1880/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat
[1881/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat
[1882/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat
[1883/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat
[1884/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat
[1885/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat
[1886/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat
[1887/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat
[1888/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat
[1889/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat
[1890/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat
[1891/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat
[1892/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat
[1893/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat
[1894/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat
[1895/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat
[1896/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat
[1897/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat
[1898/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat
[1899/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat
[1900/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat
[1901/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat
[1902/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat
[1903/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat
[1904/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat
[1905/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat
[1906/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat
[1907/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat
[1908/1930] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc
[1909/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat
[1910/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat
[1911/1930] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc
[1912/1930] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc
[1913/1930] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc
[1914/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc
[1915/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc
[1916/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc
[1917/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc
[1918/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc
[1919/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc
[1920/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc
[1921/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc
[1922/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc
[1923/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc
[1924/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc
[1925/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc
[1926/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc
[1927/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc
[1928/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc
[1929/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc
[1930/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc
$ ccache -vs 2>/dev/null
Cache directory:    /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/ccache
Config file:        /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf
Stats updated:      Fri Jun 21 16:25:03 2024
Cacheable calls:     626 / 626 (100.0%)
  Hits:                2 / 626 ( 0.32%)
    Direct:            1 /   2 (50.00%)
    Preprocessed:      1 /   2 (50.00%)
  Misses:            624 / 626 (99.68%)
Successful lookups:
  Direct:              1 / 626 ( 0.16%)
  Preprocessed:        1 / 625 ( 0.16%)
Local storage:
  Cache size (GiB):  0.3 / 5.0 ( 6.51%)
  Files:            3552
  Hits:                2 / 626 ( 0.32%)
  Misses:            624 / 626 (99.68%)
  Reads:            1252
  Writes:           1184
$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg
$ cat src/nrnpython/setup.cfg
[install]
prefix=
$ ctest --output-on-failure
Test project /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build
        Start 241: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start 251: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
  1/304 Test #251: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ..................   Passed    1.51 sec
        Start 257: testcorenrn_conc::coreneuron_cpu_offline::preparation
  2/304 Test #257: testcorenrn_conc::coreneuron_cpu_offline::preparation ....................   Passed    0.21 sec
        Start 263: testcorenrn_deriv::coreneuron_cpu_offline::preparation
  3/304 Test #263: testcorenrn_deriv::coreneuron_cpu_offline::preparation ...................   Passed    0.21 sec
        Start 275: testcorenrn_kin::coreneuron_cpu_offline::preparation
  4/304 Test #241: external_ringtest::coreneuron_cpu_mpi_offline::preparation ...............   Passed    2.01 sec
        Start 269: testcorenrn_gf::coreneuron_cpu_offline::preparation
  5/304 Test #275: testcorenrn_kin::coreneuron_cpu_offline::preparation .....................   Passed    0.21 sec
        Start 159: pyinit::nrniv_py3.10_python_check_sys_path::preparation
  6/304 Test #159: pyinit::nrniv_py3.10_python_check_sys_path::preparation ..................   Passed    0.02 sec
        Start 161: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation
  7/304 Test #161: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ...............   Passed    0.02 sec
        Start 163: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation
  8/304 Test #163: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................   Passed    0.02 sec
        Start 165: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation
  9/304 Test #165: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation .............   Passed    0.02 sec
        Start 167: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation
 10/304 Test #269: testcorenrn_gf::coreneuron_cpu_offline::preparation ......................   Passed    0.22 sec
        Start 280: testcorenrn_patstim::coreneuron_cpu_offline::preparation
 11/304 Test #167: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ...........   Passed    0.02 sec
        Start 169: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation
 12/304 Test #169: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........   Passed    0.02 sec
        Start 171: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation
 13/304 Test #171: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ...........   Passed    0.02 sec
        Start 173: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation
 14/304 Test #173: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........   Passed    0.02 sec
        Start 175: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation
 15/304 Test #175: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ......   Passed    0.02 sec
        Start 177: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation
 16/304 Test #177: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ...   Passed    0.02 sec
        Start 179: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation
 17/304 Test #179: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation .......   Passed    0.02 sec
        Start 181: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation
 18/304 Test #181: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation ....   Passed    0.02 sec
        Start 183: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation
 19/304 Test #183: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........   Passed    0.02 sec
        Start 185: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation
 20/304 Test #185: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation .....   Passed    0.02 sec
        Start 187: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation
 21/304 Test #187: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation .......   Passed    0.02 sec
        Start 189: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation
 22/304 Test #189: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation ....   Passed    0.02 sec
        Start 195: pyinit::nrniv_pydef_python_check_sys_path::preparation
 23/304 Test #280: testcorenrn_patstim::coreneuron_cpu_offline::preparation .................   Passed    0.26 sec
        Start 286: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
 24/304 Test #195: pyinit::nrniv_pydef_python_check_sys_path::preparation ...................   Passed    0.02 sec
        Start 197: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation
 25/304 Test #197: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................   Passed    0.02 sec
        Start 199: pyinit::nrniv_pydef_python_check_sys_prefix::preparation
 26/304 Test #199: pyinit::nrniv_pydef_python_check_sys_prefix::preparation .................   Passed    0.02 sec
        Start 201: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation
 27/304 Test #201: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation ..............   Passed    0.02 sec
        Start 203: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation
 28/304 Test #203: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............   Passed    0.02 sec
        Start 205: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation
 29/304 Test #205: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation .........   Passed    0.02 sec
        Start 207: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation
 30/304 Test #207: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............   Passed    0.02 sec
        Start 209: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation
 31/304 Test #209: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation .........   Passed    0.02 sec
        Start 211: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation
 32/304 Test #211: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation .......   Passed    0.02 sec
        Start 213: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation
 33/304 Test #286: testcorenrn_vecplay::coreneuron_cpu_offline::preparation .................   Passed    0.21 sec
        Start 298: testcorenrn_watch::coreneuron_cpu_offline::preparation
 34/304 Test #213: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation ....   Passed    0.02 sec
        Start 215: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation
 35/304 Test #215: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........   Passed    0.02 sec
        Start 217: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation
 36/304 Test #217: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation .....   Passed    0.02 sec
        Start 219: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation
 37/304 Test #219: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation .........   Passed    0.02 sec
        Start 221: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation
 38/304 Test #221: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ......   Passed    0.02 sec
        Start 223: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation
 39/304 Test #223: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........   Passed    0.02 sec
        Start 225: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation
 40/304 Test #225: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation .....   Passed    0.02 sec
        Start 233: external_ringtest::neuron
 41/304 Test #298: testcorenrn_watch::coreneuron_cpu_offline::preparation ...................   Passed    0.22 sec
        Start 234: external_ringtest::neuron_mpi
 42/304 Test #234: external_ringtest::neuron_mpi ............................................   Passed    8.55 sec
        Start 235: external_ringtest::neuron_mpi_python
 43/304 Test #233: external_ringtest::neuron ................................................   Passed   16.37 sec
        Start 247: testcorenrn_bbcore::neuron
 44/304 Test #247: testcorenrn_bbcore::neuron ...............................................   Passed    0.22 sec
        Start 248: testcorenrn_bbcore::coreneuron_cpu_online
 45/304 Test #248: testcorenrn_bbcore::coreneuron_cpu_online ................................   Passed    0.49 sec
        Start 249: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
 46/304 Test #235: external_ringtest::neuron_mpi_python .....................................   Passed    8.90 sec
        Start 237: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
 47/304 Test #249: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ...............   Passed    0.58 sec
        Start 250: testcorenrn_bbcore::coreneuron_cpu_offline
 48/304 Test #250: testcorenrn_bbcore::coreneuron_cpu_offline ...............................   Passed    0.31 sec
        Start 253: testcorenrn_conc::neuron
 49/304 Test #253: testcorenrn_conc::neuron .................................................   Passed    0.25 sec
        Start 254: testcorenrn_conc::coreneuron_cpu_online
 50/304 Test #254: testcorenrn_conc::coreneuron_cpu_online ..................................   Passed    0.49 sec
        Start 255: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 51/304 Test #255: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate .................   Passed    0.54 sec
        Start 256: testcorenrn_conc::coreneuron_cpu_offline
 52/304 Test #256: testcorenrn_conc::coreneuron_cpu_offline .................................   Passed    0.16 sec
        Start 259: testcorenrn_deriv::neuron
 53/304 Test #237: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................   Passed    1.97 sec
        Start 238: external_ringtest::coreneuron_cpu_mpi
 54/304 Test #259: testcorenrn_deriv::neuron ................................................   Passed    0.24 sec
        Start 260: testcorenrn_deriv::coreneuron_cpu_online
 55/304 Test #260: testcorenrn_deriv::coreneuron_cpu_online .................................   Passed    0.51 sec
        Start 261: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 56/304 Test #261: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................   Passed    0.53 sec
        Start 262: testcorenrn_deriv::coreneuron_cpu_offline
 57/304 Test #238: external_ringtest::coreneuron_cpu_mpi ....................................   Passed    1.32 sec
        Start 239: external_ringtest::coreneuron_cpu_mpi_python
 58/304 Test #262: testcorenrn_deriv::coreneuron_cpu_offline ................................   Passed    0.17 sec
        Start 271: testcorenrn_kin::neuron
 59/304 Test #271: testcorenrn_kin::neuron ..................................................   Passed    0.29 sec
        Start 272: testcorenrn_kin::coreneuron_cpu_online
 60/304 Test #272: testcorenrn_kin::coreneuron_cpu_online ...................................   Passed    0.65 sec
        Start 273: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 61/304 Test #273: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ..................   Passed    0.52 sec
        Start 274: testcorenrn_kin::coreneuron_cpu_offline
 62/304 Test #239: external_ringtest::coreneuron_cpu_mpi_python .............................   Passed    1.61 sec
        Start 240: external_ringtest::coreneuron_cpu_mpi_offline
 63/304 Test #274: testcorenrn_kin::coreneuron_cpu_offline ..................................   Passed    0.18 sec
        Start   1: cmd_interface_test
 64/304 Test   #1: cmd_interface_test .......................................................   Passed    0.37 sec
        Start   2: interleave_info_constructor_test
 65/304 Test   #2: interleave_info_constructor_test .........................................   Passed    0.21 sec
        Start   3: alignment_test
 66/304 Test #240: external_ringtest::coreneuron_cpu_mpi_offline ............................   Passed    0.79 sec
        Start 244: external_ringtest::coreneuron_mpi_registermapping_directmode
 67/304 Test   #3: alignment_test ...........................................................   Passed    0.21 sec
        Start   4: queuing_test
 68/304 Test   #4: queuing_test .............................................................   Passed    0.29 sec
        Start   5: test-solver
 69/304 Test   #5: test-solver ..............................................................   Passed    0.32 sec
        Start   6: random_test
 70/304 Test   #6: random_test ..............................................................   Passed    0.23 sec
        Start   7: lfp_test
 71/304 Test   #7: lfp_test .................................................................   Passed    0.27 sec
        Start   8: unit_tests::testneuron
 72/304 Test   #8: unit_tests::testneuron ...................................................   Passed    0.26 sec
        Start   9: unit_tests::testneuron_soa_erase_calls_terminate
 73/304 Test   #9: unit_tests::testneuron_soa_erase_calls_terminate .........................   Passed    0.10 sec
        Start  10: ringtest
 74/304 Test #244: external_ringtest::coreneuron_mpi_registermapping_directmode .............   Passed    1.59 sec
        Start 245: external_ringtest::coreneuron_mpi_registermapping_filemode
 75/304 Test  #10: ringtest .................................................................   Passed    0.85 sec
        Start  11: connect_dend
 76/304 Test  #11: connect_dend .............................................................   Passed    0.15 sec
        Start  12: mpi_init::nrniv_mpiopt
 77/304 Test  #12: mpi_init::nrniv_mpiopt ...................................................   Passed    0.16 sec
        Start  13: mpi_init::nrniv_nrnmpi_init
 78/304 Test  #13: mpi_init::nrniv_nrnmpi_init ..............................................   Passed    0.16 sec
        Start  14: mpi_init::python_nrnmpi_init
 79/304 Test #245: external_ringtest::coreneuron_mpi_registermapping_filemode ...............   Passed    1.76 sec
        Start 265: testcorenrn_gf::neuron
 80/304 Test  #14: mpi_init::python_nrnmpi_init .............................................   Passed    0.63 sec
        Start  15: mpi_init::python_mpienv
 81/304 Test  #15: mpi_init::python_mpienv ..................................................   Passed    0.60 sec
        Start  16: mpi_init::nrniv_mpiexec_mpiopt
 82/304 Test  #16: mpi_init::nrniv_mpiexec_mpiopt ...........................................   Passed    0.18 sec
        Start  17: mpi_init::nrniv_mpiexec_nrnmpi_init
 83/304 Test  #17: mpi_init::nrniv_mpiexec_nrnmpi_init ......................................   Passed    0.20 sec
        Start  18: mpi_init::python_mpiexec_nrnmpi_init
 84/304 Test  #18: mpi_init::python_mpiexec_nrnmpi_init .....................................   Passed    0.64 sec
        Start  19: mpi_init::python_mpiexec_mpienv
 85/304 Test  #19: mpi_init::python_mpiexec_mpienv ..........................................   Passed    0.62 sec
        Start  20: unit_tests::python_unit_tests
 86/304 Test #265: testcorenrn_gf::neuron ...................................................   Passed    2.50 sec
        Start 266: testcorenrn_gf::coreneuron_cpu_online
 87/304 Test  #20: unit_tests::python_unit_tests ............................................   Passed    0.93 sec
        Start  21: pytest::basic_tests_py3.10
 88/304 Test #266: testcorenrn_gf::coreneuron_cpu_online ....................................   Passed    0.82 sec
        Start 267: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 89/304 Test  #21: pytest::basic_tests_py3.10 ...............................................   Passed    0.87 sec
        Start  22: pytest_coreneuron::basic_tests_py3.10
 90/304 Test #267: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ...................   Passed    2.29 sec
        Start 268: testcorenrn_gf::coreneuron_cpu_offline
 91/304 Test #268: testcorenrn_gf::coreneuron_cpu_offline ...................................   Passed    0.44 sec
        Start 277: testcorenrn_patstim::neuron
 92/304 Test #277: testcorenrn_patstim::neuron ..............................................   Passed    0.36 sec
        Start 278: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
 93/304 Test #278: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ..................   Passed    0.60 sec
        Start 279: testcorenrn_patstim::coreneuron_cpu_offline
 94/304 Test #279: testcorenrn_patstim::coreneuron_cpu_offline ..............................   Passed    0.18 sec
        Start 282: testcorenrn_vecplay::neuron
 95/304 Test #282: testcorenrn_vecplay::neuron ..............................................   Passed    0.28 sec
        Start 283: testcorenrn_vecplay::coreneuron_cpu_online
 96/304 Test #283: testcorenrn_vecplay::coreneuron_cpu_online ...............................   Passed    0.55 sec
        Start 284: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
 97/304 Test #284: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ..............   Passed    0.65 sec
        Start 285: testcorenrn_vecplay::coreneuron_cpu_offline
 98/304 Test  #22: pytest_coreneuron::basic_tests_py3.10 ....................................   Passed    4.57 sec
        Start  23: datahandle::datahandle_tests
 99/304 Test #285: testcorenrn_vecplay::coreneuron_cpu_offline ..............................   Passed    0.20 sec
        Start 294: testcorenrn_watch::neuron
100/304 Test #294: testcorenrn_watch::neuron ................................................   Passed    0.43 sec
        Start 295: testcorenrn_watch::coreneuron_cpu_online
101/304 Test  #23: datahandle::datahandle_tests .............................................   Passed    0.82 sec
        Start  24: coverage_tests::cover_tests
102/304 Test #295: testcorenrn_watch::coreneuron_cpu_online .................................   Passed    0.63 sec
        Start 296: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
103/304 Test  #24: coverage_tests::cover_tests ..............................................   Passed    1.00 sec
        Start  25: example_nmodl::ca_ap_hoc
104/304 Test #296: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................   Passed    0.87 sec
        Start 297: testcorenrn_watch::coreneuron_cpu_offline
105/304 Test #297: testcorenrn_watch::coreneuron_cpu_offline ................................   Passed    0.19 sec
        Start 300: testcorenrn_netstimdirect::direct_netstimdirect
106/304 Test  #25: example_nmodl::ca_ap_hoc .................................................   Passed    0.42 sec
        Start  26: example_nmodl::cabpump_hoc
107/304 Test  #26: example_nmodl::cabpump_hoc ...............................................   Passed    0.18 sec
        Start  27: example_nmodl::cachan_hoc
108/304 Test  #27: example_nmodl::cachan_hoc ................................................   Passed    0.31 sec
        Start  28: example_nmodl::cadif_hoc
109/304 Test  #28: example_nmodl::cadif_hoc .................................................   Passed    0.20 sec
        Start  29: example_nmodl::cadifusl_hoc
110/304 Test #300: testcorenrn_netstimdirect::direct_netstimdirect ..........................   Passed    0.79 sec
        Start 301: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
111/304 Test  #29: example_nmodl::cadifusl_hoc ..............................................   Passed    0.21 sec
        Start  30: example_nmodl::cadifusl1_hoc
112/304 Test  #30: example_nmodl::cadifusl1_hoc .............................................   Passed    0.55 sec
        Start  31: example_nmodl::cadifusl2_hoc
113/304 Test  #31: example_nmodl::cadifusl2_hoc .............................................   Passed    0.18 sec
        Start  32: example_nmodl::cagk_hoc
114/304 Test #301: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate .........   Passed    0.87 sec
        Start  33: example_nmodl::capmp_hoc
        Start  34: example_nmodl::cv_hoc
115/304 Test  #32: example_nmodl::cagk_hoc ..................................................   Passed    0.14 sec
        Start  35: example_nmodl::fh_hoc
116/304 Test  #34: example_nmodl::cv_hoc ....................................................   Passed    0.14 sec
        Start  36: example_nmodl::fit1_hoc
117/304 Test  #33: example_nmodl::capmp_hoc .................................................   Passed    0.26 sec
        Start  37: example_nmodl::gap_hoc
118/304 Test  #35: example_nmodl::fh_hoc ....................................................   Passed    0.14 sec
        Start  38: example_nmodl::hh1_hoc
119/304 Test  #36: example_nmodl::fit1_hoc ..................................................   Passed    0.14 sec
        Start  39: example_nmodl::hhvect_hoc
120/304 Test  #38: example_nmodl::hh1_hoc ...................................................   Passed    0.14 sec
        Start  40: example_nmodl::nacum_hoc
121/304 Test  #37: example_nmodl::gap_hoc ...................................................   Passed    0.15 sec
        Start  41: example_nmodl::nadifl1_hoc
122/304 Test  #39: example_nmodl::hhvect_hoc ................................................   Passed    0.14 sec
        Start  42: example_nmodl::nadifl2_hoc
123/304 Test  #40: example_nmodl::nacum_hoc .................................................   Passed    0.14 sec
        Start  43: example_nmodl::nadifl3_hoc
124/304 Test  #41: example_nmodl::nadifl1_hoc ...............................................   Passed    0.16 sec
        Start  44: example_nmodl::nadifl4_hoc
125/304 Test  #42: example_nmodl::nadifl2_hoc ...............................................   Passed    0.17 sec
        Start  45: example_nmodl::obj_ex_hoc
126/304 Test  #43: example_nmodl::nadifl3_hoc ...............................................   Passed    0.18 sec
        Start  46: example_nmodl::order_hoc
127/304 Test  #45: example_nmodl::obj_ex_hoc ................................................   Passed    0.14 sec
        Start  47: example_nmodl::passiv_hoc
128/304 Test  #44: example_nmodl::nadifl4_hoc ...............................................   Passed    0.17 sec
        Start  48: example_nmodl::stim1_hoc
129/304 Test  #47: example_nmodl::passiv_hoc ................................................   Passed    0.14 sec
        Start  49: example_nmodl::syn1_hoc
130/304 Test  #48: example_nmodl::stim1_hoc .................................................   Passed    0.14 sec
        Start  50: example_nmodl::synpre_hoc
131/304 Test  #46: example_nmodl::order_hoc .................................................   Passed    0.17 sec
        Start  51: example_nmodl::tstextrn_hoc
132/304 Test  #51: example_nmodl::tstextrn_hoc ..............................................   Passed    0.13 sec
        Start  52: example_nmodl::tstpnt1_hoc
133/304 Test  #49: example_nmodl::syn1_hoc ..................................................   Passed    0.15 sec
        Start  53: example_nmodl::tstpnt2_hoc
134/304 Test  #50: example_nmodl::synpre_hoc ................................................   Passed    0.20 sec
        Start  54: example_nmodl::tstvec_hoc
135/304 Test  #52: example_nmodl::tstpnt1_hoc ...............................................   Passed    0.14 sec
        Start  55: example_nmodl::cagkftab_py
136/304 Test  #53: example_nmodl::tstpnt2_hoc ...............................................   Passed    0.14 sec
        Start  56: example_nmodl::expsynspine_py
137/304 Test  #54: example_nmodl::tstvec_hoc ................................................   Passed    0.14 sec
        Start  57: example_nmodl::nonlin_py
138/304 Test  #56: example_nmodl::expsynspine_py ............................................   Passed    0.86 sec
        Start  58: example_nmodl::tstpnt1_py
139/304 Test  #58: example_nmodl::tstpnt1_py ................................................   Passed    0.53 sec
        Start  59: example_nmodl::tstpnt2_py
140/304 Test  #59: example_nmodl::tstpnt2_py ................................................   Passed    0.55 sec
        Start  60: example_nmodl::vlag_py
141/304 Test  #60: example_nmodl::vlag_py ...................................................   Passed    0.56 sec
        Start  61: hoctests::test_loadbal_hoc
142/304 Test  #57: example_nmodl::nonlin_py .................................................   Passed    2.79 sec
        Start  62: hoctests::test_random_hoc
143/304 Test  #61: hoctests::test_loadbal_hoc ...............................................   Passed    0.39 sec
        Start  63: hoctests::perf1_hoc
144/304 Test  #62: hoctests::test_random_hoc ................................................   Passed    0.14 sec
        Start  64: hoctests::test1_hoc
145/304 Test  #64: hoctests::test1_hoc ......................................................   Passed    0.36 sec
        Start  65: hoctests::test2_hoc
146/304 Test  #65: hoctests::test2_hoc ......................................................   Passed    0.21 sec
        Start  66: hoctests::test3_hoc
147/304 Test  #66: hoctests::test3_hoc ......................................................   Passed    0.16 sec
        Start  67: hoctests::test4_hoc
148/304 Test  #67: hoctests::test4_hoc ......................................................   Passed    0.13 sec
        Start  68: hoctests::test5_hoc
149/304 Test  #68: hoctests::test5_hoc ......................................................   Passed    0.13 sec
        Start  69: hoctests::test6_hoc
150/304 Test  #69: hoctests::test6_hoc ......................................................   Passed    0.13 sec
        Start  70: hoctests::test7_hoc
151/304 Test  #70: hoctests::test7_hoc ......................................................   Passed    0.13 sec
        Start  71: hoctests::test8_hoc
152/304 Test  #71: hoctests::test8_hoc ......................................................   Passed    0.14 sec
        Start  72: hoctests::test9_hoc
153/304 Test  #63: hoctests::perf1_hoc ......................................................   Passed    1.49 sec
        Start  73: hoctests::test_bbss_py
154/304 Test  #55: example_nmodl::cagkftab_py ...............................................   Passed    4.40 sec
        Start  74: hoctests::test_cvinterp_py
155/304 Test  #72: hoctests::test9_hoc ......................................................   Passed    0.13 sec
        Start  75: hoctests::test_hocGUI2_py
156/304 Test  #74: hoctests::test_cvinterp_py ...............................................   Passed    0.80 sec
        Start  76: hoctests::test_hocmech_py
157/304 Test  #73: hoctests::test_bbss_py ...................................................   Passed    0.82 sec
        Start  77: hoctests::test_kschan_py
158/304 Test  #75: hoctests::test_hocGUI2_py ................................................   Passed    0.77 sec
        Start  78: hoctests::test_legacy_setpointer_py
159/304 Test  #76: hoctests::test_hocmech_py ................................................   Passed    0.84 sec
        Start  79: hoctests::test_mechfunc_py
160/304 Test  #78: hoctests::test_legacy_setpointer_py ......................................   Passed    0.78 sec
        Start  80: hoctests::test_mechstd_py
161/304 Test  #77: hoctests::test_kschan_py .................................................   Passed    0.94 sec
        Start  81: hoctests::test_mode_py
162/304 Test  #79: hoctests::test_mechfunc_py ...............................................   Passed    0.77 sec
        Start  82: hoctests::test_neurondemo_py
163/304 Test  #80: hoctests::test_mechstd_py ................................................   Passed    0.79 sec
        Start  83: hoctests::test_nrniv-launch_py
164/304 Test  #81: hoctests::test_mode_py ...................................................   Passed    0.74 sec
        Start  84: hoctests::test_optim_node_order_py
165/304 Test  #83: hoctests::test_nrniv-launch_py ...........................................   Passed    0.52 sec
        Start  85: hoctests::test_random_py
166/304 Test  #82: hoctests::test_neurondemo_py .............................................   Passed    0.67 sec
        Start  86: hoctests::test_setdata_py
167/304 Test  #84: hoctests::test_optim_node_order_py .......................................   Passed    0.66 sec
        Start  87: hoctests::test_shape_py
168/304 Test  #85: hoctests::test_random_py .................................................   Passed    0.88 sec
        Start  88: hoctests::test_thread_partition_py
169/304 Test  #86: hoctests::test_setdata_py ................................................   Passed    0.84 sec
        Start  89: hoctests::test1_py
170/304 Test  #87: hoctests::test_shape_py ..................................................   Passed    0.88 sec
        Start  90: hoctests::test2_py
171/304 Test  #89: hoctests::test1_py .......................................................   Passed    0.82 sec
        Start  91: hoctests::test9_py
172/304 Test  #88: hoctests::test_thread_partition_py .......................................   Passed    1.04 sec
        Start  97: coreneuron_standalone::test_nrn_corenrn_standalone
173/304 Test  #90: hoctests::test2_py .......................................................   Passed    0.87 sec
        Start  98: nmodl_tests::test_table
174/304 Test  #91: hoctests::test9_py .......................................................   Passed    0.56 sec
        Start  99: nmodl_tests::test_disc
175/304 Test  #98: nmodl_tests::test_table ..................................................   Passed    1.34 sec
        Start 100: nmodl_tests::test_function_table
176/304 Test  #99: nmodl_tests::test_disc ...................................................   Passed    0.93 sec
        Start 101: nmodl_tests::test_kinetic
177/304 Test  #97: coreneuron_standalone::test_nrn_corenrn_standalone .......................   Passed    1.37 sec
        Start 102: nmodl_tests::test_random
178/304 Test #102: nmodl_tests::test_random .................................................   Passed    0.88 sec
        Start 103: nmodl_tests::test_path_spaces
179/304 Test #101: nmodl_tests::test_kinetic ................................................   Passed    0.91 sec
        Start 104: coreneuron_modtests::version_macros
180/304 Test #100: nmodl_tests::test_function_table .........................................   Passed    0.92 sec
        Start 106: coreneuron_modtests::fornetcon_py_cpu
181/304 Test #103: nmodl_tests::test_path_spaces ............................................   Passed    0.92 sec
        Start 107: coreneuron_modtests::direct_py_cpu
182/304 Test #104: coreneuron_modtests::version_macros ......................................   Passed    1.12 sec
        Start 108: coreneuron_modtests::direct_hoc_cpu
183/304 Test #106: coreneuron_modtests::fornetcon_py_cpu ....................................   Passed    1.17 sec
        Start 109: coreneuron_modtests::spikes_py_cpu
184/304 Test #107: coreneuron_modtests::direct_py_cpu .......................................   Passed    1.01 sec
        Start 110: coreneuron_modtests::spikes_file_mode_py_cpu
185/304 Test #108: coreneuron_modtests::direct_hoc_cpu ......................................   Passed    0.91 sec
        Start 111: coreneuron_modtests::fast_imem_py_cpu
186/304 Test #109: coreneuron_modtests::spikes_py_cpu .......................................   Passed    1.11 sec
        Start 112: coreneuron_modtests::datareturn_py_cpu
187/304 Test #110: coreneuron_modtests::spikes_file_mode_py_cpu .............................   Passed    0.97 sec
        Start 113: coreneuron_modtests::test_units_py_cpu
188/304 Test #111: coreneuron_modtests::fast_imem_py_cpu ....................................   Passed    1.36 sec
        Start 114: coreneuron_modtests::test_netmove_py_cpu
189/304 Test #113: coreneuron_modtests::test_units_py_cpu ...................................   Passed    0.84 sec
        Start 115: coreneuron_modtests::test_pointer_py_cpu
190/304 Test #112: coreneuron_modtests::datareturn_py_cpu ...................................   Passed    1.82 sec
        Start 116: coreneuron_modtests::test_watchrange_py_cpu
191/304 Test #116: coreneuron_modtests::test_watchrange_py_cpu ..............................   Passed    0.97 sec
        Start 117: coreneuron_modtests::test_psolve_py_cpu
192/304 Test #114: coreneuron_modtests::test_netmove_py_cpu .................................   Passed    1.77 sec
        Start 118: coreneuron_modtests::test_ba_py_cpu
193/304 Test #118: coreneuron_modtests::test_ba_py_cpu ......................................   Passed    0.85 sec
        Start 119: coreneuron_modtests::test_nmodlrandom_py_cpu
194/304 Test #117: coreneuron_modtests::test_psolve_py_cpu ..................................   Passed    1.03 sec
        Start 120: coreneuron_modtests::test_nmodlrandom_syntax_py_cpu
195/304 Test #115: coreneuron_modtests::test_pointer_py_cpu .................................   Passed    3.43 sec
        Start 121: coreneuron_modtests::test_natrans_py_cpu
196/304 Test #119: coreneuron_modtests::test_nmodlrandom_py_cpu .............................   Passed    1.30 sec
        Start 122: coreneuron_modtests::array_variable_transfer_run_mode_0_py_cpu
197/304 Test #121: coreneuron_modtests::test_natrans_py_cpu .................................   Passed    0.93 sec
        Start 123: coreneuron_modtests::array_variable_transfer_run_mode_1_py_cpu
198/304 Test #122: coreneuron_modtests::array_variable_transfer_run_mode_0_py_cpu ...........   Passed    1.03 sec
        Start 124: coreneuron_modtests::array_variable_transfer_run_mode_2_py_cpu
199/304 Test #123: coreneuron_modtests::array_variable_transfer_run_mode_1_py_cpu ...........   Passed    1.11 sec
        Start 125: coreneuron_modtests::array_variable_transfer_file_mode_py_cpu
200/304 Test #124: coreneuron_modtests::array_variable_transfer_run_mode_2_py_cpu ...........   Passed    1.13 sec
        Start 128: nmodl_tests_coreneuron::test_table_coreneuron_cpu
201/304 Test #120: coreneuron_modtests::test_nmodlrandom_syntax_py_cpu ......................   Passed    3.57 sec
        Start 129: nmodl_tests_coreneuron::test_disc_coreneuron_cpu
202/304 Test #125: coreneuron_modtests::array_variable_transfer_file_mode_py_cpu ............   Passed    1.08 sec
        Start 130: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu
203/304 Test #128: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................   Passed    1.07 sec
        Start 131: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu
204/304 Test #129: nmodl_tests_coreneuron::test_disc_coreneuron_cpu .........................   Passed    0.95 sec
        Start 132: modlunit_unitstest
205/304 Test #132: modlunit_unitstest .......................................................   Passed    0.23 sec
        Start 133: modlunit_hh
206/304 Test #133: modlunit_hh ..............................................................   Passed    0.09 sec
        Start 134: modlunit_stim
207/304 Test #134: modlunit_stim ............................................................   Passed    0.09 sec
        Start 135: modlunit_pattern
208/304 Test #135: modlunit_pattern .........................................................   Passed    0.10 sec
        Start 136: modlunit_rand
209/304 Test #136: modlunit_rand ............................................................   Passed    0.10 sec
        Start 137: api::hh_sim_cpp
210/304 Test #130: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ...............   Passed    1.05 sec
        Start 138: api::netcon_cpp
211/304 Test #131: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ......................   Passed    0.93 sec
        Start 139: api::sections_c
212/304 Test #137: api::hh_sim_cpp ..........................................................   Passed    0.26 sec
        Start 140: api::vclamp_cpp
213/304 Test #139: api::sections_c ..........................................................   Passed    0.22 sec
        Start 141: pyinit::nrniv_script.py
214/304 Test #138: api::netcon_cpp ..........................................................   Passed    0.40 sec
        Start 142: pyinit::nrniv_script.py_error
215/304 Test #141: pyinit::nrniv_script.py ..................................................   Passed    0.13 sec
        Start 143: pyinit::nrniv_two_scripts.py
216/304 Test #140: api::vclamp_cpp ..........................................................   Passed    0.34 sec
        Start 144: pyinit::nrniv_two_scripts.py_error_check_code
217/304 Test #142: pyinit::nrniv_script.py_error ............................................   Passed    0.12 sec
        Start 145: pyinit::nrniv_two_scripts.py_error_check_output
218/304 Test #143: pyinit::nrniv_two_scripts.py .............................................   Passed    0.13 sec
        Start 146: pyinit::nrniv_python_command
219/304 Test #144: pyinit::nrniv_two_scripts.py_error_check_code ............................   Passed    0.12 sec
        Start 147: pyinit::nrniv_python_command_error
220/304 Test #145: pyinit::nrniv_two_scripts.py_error_check_output ..........................   Passed    0.12 sec
        Start 148: pyinit::nrniv_python_script.py
221/304 Test #146: pyinit::nrniv_python_command .............................................   Passed    0.13 sec
        Start 149: pyinit::nrniv_python_script.py_error
222/304 Test #148: pyinit::nrniv_python_script.py ...........................................   Passed    0.13 sec
        Start 150: pyinit::nrniv_python_command_twice
223/304 Test #147: pyinit::nrniv_python_command_error .......................................   Passed    0.13 sec
        Start 151: pyinit::nrniv_python_script.py_twice
224/304 Test #149: pyinit::nrniv_python_script.py_error .....................................   Passed    0.13 sec
        Start 152: pyinit::nrniv_python_command_args
225/304 Test #150: pyinit::nrniv_python_command_twice .......................................   Passed    0.13 sec
        Start 153: pyinit::nrniv_python_script.py_args
226/304 Test #151: pyinit::nrniv_python_script.py_twice .....................................   Passed    0.13 sec
        Start 154: pyinit::nrniv_nopython_PythonObject
227/304 Test #154: pyinit::nrniv_nopython_PythonObject ......................................   Passed    0.12 sec
        Start 155: pyinit::nrniv_nopython_PythonObject_pyexe
228/304 Test #153: pyinit::nrniv_python_script.py_args ......................................   Passed    0.14 sec
        Start 156: pyinit::nrniv_nopython_PythonObject_pyenv
229/304 Test #152: pyinit::nrniv_python_command_args ........................................   Passed    0.15 sec
        Start 157: pyinit::nrniv_py3.10_python_command_version_check
230/304 Test #155: pyinit::nrniv_nopython_PythonObject_pyexe ................................   Passed    0.11 sec
        Start 158: pyinit::nrniv_py3.10_python_check_sys_path
231/304 Test #156: pyinit::nrniv_nopython_PythonObject_pyenv ................................   Passed    0.11 sec
        Start 160: pyinit::nrniv_py3.10_nrnpython_check_sys_path
232/304 Test #157: pyinit::nrniv_py3.10_python_command_version_check ........................   Passed    0.13 sec
        Start 162: pyinit::nrniv_py3.10_python_check_sys_prefix
233/304 Test #158: pyinit::nrniv_py3.10_python_check_sys_path ...............................   Passed    0.14 sec
        Start 164: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix
234/304 Test #160: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................   Passed    0.14 sec
        Start 166: pyinit::nrniv_py3.10_python_check_sys_exec_prefix
235/304 Test #162: pyinit::nrniv_py3.10_python_check_sys_prefix .............................   Passed    0.14 sec
        Start 168: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix
236/304 Test #164: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix ..........................   Passed    0.13 sec
        Start 170: pyinit::nrniv_py3.10_python_check_sys_base_prefix
237/304 Test #166: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................   Passed    0.13 sec
        Start 172: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix
238/304 Test #168: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix .....................   Passed    0.13 sec
        Start 174: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix
239/304 Test #170: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................   Passed    0.13 sec
        Start 176: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix
240/304 Test #172: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix .....................   Passed    0.13 sec
        Start 178: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding
241/304 Test #174: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ...................   Passed    0.13 sec
        Start 180: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding
242/304 Test #176: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................   Passed    0.13 sec
        Start 182: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding
243/304 Test #178: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding ....................   Passed    0.13 sec
        Start 184: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding
244/304 Test #180: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding .................   Passed    0.13 sec
        Start 186: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding
245/304 Test #182: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding .....................   Passed    0.13 sec
        Start 188: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding
246/304 Test #184: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding ..................   Passed    0.13 sec
        Start 190: pyinit::nrniv_py3.10_python_command_import_neuron
247/304 Test #186: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding ....................   Passed    0.13 sec
        Start 191: pyinit::py3.10_command_import_neuron
248/304 Test #188: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding .................   Passed    0.13 sec
        Start 192: pyinit::nrniv_py3.10_hoc_command_nrnpython
249/304 Test #192: pyinit::nrniv_py3.10_hoc_command_nrnpython ...............................   Passed    0.29 sec
        Start 193: pyinit::nrniv_pydef_python_command_version_check
250/304 Test #193: pyinit::nrniv_pydef_python_command_version_check .........................   Passed    0.19 sec
        Start 194: pyinit::nrniv_pydef_python_check_sys_path
251/304 Test #190: pyinit::nrniv_py3.10_python_command_import_neuron ........................   Passed    0.67 sec
        Start 196: pyinit::nrniv_pydef_nrnpython_check_sys_path
252/304 Test #191: pyinit::py3.10_command_import_neuron .....................................   Passed    0.66 sec
        Start 198: pyinit::nrniv_pydef_python_check_sys_prefix
253/304 Test #194: pyinit::nrniv_pydef_python_check_sys_path ................................   Passed    0.15 sec
        Start 200: pyinit::nrniv_pydef_nrnpython_check_sys_prefix
254/304 Test #196: pyinit::nrniv_pydef_nrnpython_check_sys_path .............................   Passed    0.14 sec
        Start 202: pyinit::nrniv_pydef_python_check_sys_exec_prefix
255/304 Test #198: pyinit::nrniv_pydef_python_check_sys_prefix ..............................   Passed    0.14 sec
        Start 204: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix
256/304 Test #200: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ...........................   Passed    0.14 sec
        Start 206: pyinit::nrniv_pydef_python_check_sys_base_prefix
257/304 Test #202: pyinit::nrniv_pydef_python_check_sys_exec_prefix .........................   Passed    0.14 sec
        Start 208: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix
258/304 Test #204: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ......................   Passed    0.13 sec
        Start 210: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix
259/304 Test #206: pyinit::nrniv_pydef_python_check_sys_base_prefix .........................   Passed    0.14 sec
        Start 212: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix
260/304 Test #208: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ......................   Passed    0.13 sec
        Start 214: pyinit::nrniv_pydef_python_check_sys_stderr.encoding
261/304 Test #210: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix ....................   Passed    0.13 sec
        Start 216: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding
262/304 Test #212: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix .................   Passed    0.13 sec
        Start 218: pyinit::nrniv_pydef_python_check_sys_stdin.encoding
263/304 Test #214: pyinit::nrniv_pydef_python_check_sys_stderr.encoding .....................   Passed    0.14 sec
        Start 220: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding
264/304 Test #216: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding ..................   Passed    0.14 sec
        Start 222: pyinit::nrniv_pydef_python_check_sys_stdout.encoding
265/304 Test #218: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ......................   Passed    0.14 sec
        Start 224: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding
266/304 Test #220: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ...................   Passed    0.14 sec
        Start 226: pyinit::nrniv_pydef_python_command_import_neuron
267/304 Test #222: pyinit::nrniv_pydef_python_check_sys_stdout.encoding .....................   Passed    0.14 sec
        Start 227: pyinit::pydef_command_import_neuron
268/304 Test #224: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding ..................   Passed    0.14 sec
        Start 228: pyinit::nrniv_pydef_hoc_command_nrnpython
269/304 Test #228: pyinit::nrniv_pydef_hoc_command_nrnpython ................................   Passed    0.22 sec
        Start 229: external_nrntest
270/304 Test #226: pyinit::nrniv_pydef_python_command_import_neuron .........................   Passed    0.64 sec
        Start 236: external_ringtest_nrn::optim_node_order
271/304 Test #227: pyinit::pydef_command_import_neuron ......................................   Passed    0.66 sec
        Start 252: testcorenrn_bbcore::compare_results
272/304 Test #252: testcorenrn_bbcore::compare_results ......................................   Passed    0.14 sec
        Start 258: testcorenrn_conc::compare_results
273/304 Test #258: testcorenrn_conc::compare_results ........................................   Passed    0.02 sec
        Start 264: testcorenrn_deriv::compare_results
274/304 Test #264: testcorenrn_deriv::compare_results .......................................   Passed    0.02 sec
        Start 270: testcorenrn_gf::compare_results
275/304 Test #270: testcorenrn_gf::compare_results ..........................................   Passed    0.02 sec
        Start 276: testcorenrn_kin::compare_results
276/304 Test #276: testcorenrn_kin::compare_results .........................................   Passed    0.02 sec
        Start 281: testcorenrn_patstim::compare_results
277/304 Test #281: testcorenrn_patstim::compare_results .....................................   Passed    0.02 sec
        Start 287: testcorenrn_vecplay::compare_results
278/304 Test #287: testcorenrn_vecplay::compare_results .....................................   Passed    0.02 sec
        Start 299: testcorenrn_watch::compare_results
279/304 Test #299: testcorenrn_watch::compare_results .......................................   Passed    0.02 sec
        Start 302: testcorenrn_netstimdirect::compare_results
280/304 Test #302: testcorenrn_netstimdirect::compare_results ...............................   Passed    0.02 sec
281/304 Test #236: external_ringtest_nrn::optim_node_order ..................................   Passed   24.94 sec
        Start  93: parallel::partrans
282/304 Test  #93: parallel::partrans .......................................................   Passed    0.84 sec
        Start  94: parallel::netpar
283/304 Test  #94: parallel::netpar .........................................................   Passed    0.84 sec
        Start  95: parallel::bas
284/304 Test  #95: parallel::bas ............................................................   Passed    2.22 sec
        Start  96: parallel::nrntest_fast
285/304 Test  #96: parallel::nrntest_fast ...................................................   Passed    1.31 sec
        Start 105: coreneuron_modtests::inputpresyn_py
286/304 Test #105: coreneuron_modtests::inputpresyn_py ......................................   Passed    0.73 sec
        Start 126: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
287/304 Test #126: coreneuron_modtests::spikes_mpi_file_mode_py_cpu .........................   Passed    1.05 sec
        Start 303: tqperf::coreneuron_special
288/304 Test #303: tqperf::coreneuron_special ...............................................   Passed    2.54 sec
        Start 304: tqperf::coreneuron_python
289/304 Test #304: tqperf::coreneuron_python ................................................   Passed    2.58 sec
290/304 Test #229: external_nrntest .........................................................   Passed   45.81 sec
        Start 292: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
291/304 Test #292: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................   Passed    0.26 sec
        Start 230: reduced_dentate::neuron
292/304 Test #230: reduced_dentate::neuron ..................................................   Passed   39.30 sec
        Start 231: reduced_dentate::coreneuron_cpu
293/304 Test #231: reduced_dentate::coreneuron_cpu ..........................................   Passed   32.11 sec
        Start 242: external_ringtest::coreneuron_cpu_mpi_threads
294/304 Test #242: external_ringtest::coreneuron_cpu_mpi_threads ............................   Passed    1.35 sec
        Start 243: external_ringtest::coreneuron_cpu_mpi_threads_python
295/304 Test #243: external_ringtest::coreneuron_cpu_mpi_threads_python .....................   Passed    1.39 sec
        Start 288: testcorenrn_vecevent::neuron
296/304 Test #288: testcorenrn_vecevent::neuron .............................................   Passed    0.26 sec
        Start 289: testcorenrn_vecevent::coreneuron_cpu_online
297/304 Test #289: testcorenrn_vecevent::coreneuron_cpu_online ..............................   Passed    0.58 sec
        Start 290: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
298/304 Test #290: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .............   Passed    0.66 sec
        Start 291: testcorenrn_vecevent::coreneuron_cpu_offline
299/304 Test #291: testcorenrn_vecevent::coreneuron_cpu_offline .............................   Passed    0.20 sec
        Start  92: parallel::subworld
300/304 Test  #92: parallel::subworld .......................................................   Passed    1.14 sec
        Start 127: coreneuron_modtests::test_subworlds_py_cpu
301/304 Test #127: coreneuron_modtests::test_subworlds_py_cpu ...............................   Passed    1.32 sec
        Start 232: reduced_dentate::compare_results
        Start 246: external_ringtest::compare_results
        Start 293: testcorenrn_vecevent::compare_results
302/304 Test #232: reduced_dentate::compare_results .........................................   Passed    0.02 sec
303/304 Test #293: testcorenrn_vecevent::compare_results ....................................   Passed    0.02 sec
304/304 Test #246: external_ringtest::compare_results .......................................   Passed    0.02 sec

100% tests passed, 0 tests failed out of 304

Total Test time (real) = 193.99 sec
$ cmake --build . --target install
[0/2] Re-checking globbed directories...
[1/2] Re-running CMake...
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check
-- 3rd party project: using Random123 from "external/Random123"
-- 3rd party project: using eigen from "external/eigen"
-- Enabling sanitizers: address
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
-- Checking if /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/bin/python is a working python
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2") 
-- 3rd party project: using CLI11 from "external/CLI11"
CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Building CoreNEURON
-- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH) 
-- Sub-project : using nmodl from from /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl
-- CHECKING FOR FLEX/BISON
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0") 
--  Adding Flex include path as : /opt/homebrew/opt/flex/include/
-- NMODL_TEST_FORMATTING: OFF
-- NMODL_GIT_HOOKS: OFF
-- NMODL_GIT_COMMIT_HOOKS: 
-- NMODL_GIT_PUSH_HOOKS: courtesy-msg
-- NMODL_STATIC_ANALYSIS: OFF
-- NMODL_TEST_STATIC_ANALYSIS: OFF
-- 3rd party project: using eigen from "ext/eigen"
-- 3rd party project: using fmt from "ext/fmt"
-- Version: 10.2.1
-- Build type: Custom
-- 3rd party project: using json from "ext/json"
-- Using the multi-header code from /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/nmodl/ext/json/include/
-- 3rd party project: using pybind11 from "ext/pybind11"
-- pybind11 v2.12.0 
-- 3rd party project: using spdlog from "ext/spdlog"
-- Build spdlog: 1.13.0
-- Build type: Custom
-- CHECKING FOR PYTHON
CMake Warning (dev) at external/nmodl/src/pybind/CMakeLists.txt:27 (configure_file):
  configure_file called with unknown argument(s):

   @ONLY@

This warning is for project developers.  Use -Wno-dev to suppress it.

-- 
-- Configured NMODL 0.0 (c5ecfea 2024-06-10 16:25:23 +0200)
-- 
-- You can now build NMODL using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------------+--------------------------------------------------------
--  Target             |   Description
-- --------------------+--------------------------------------------------------
-- test                | Run unit tests
-- install             | Will install NMODL to: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g -openmp-simd 
-- Build Type          | Custom
-- Python Bindings     | OFF
-- Flex                | /opt/homebrew/opt/flex/bin/flex
-- Bison               | /opt/homebrew/opt/bison/bin/bison
-- Python              | /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/bin/python
--   Linked against    | ON
-- --------------------+--------------------------------------------------------
--  See documentation : https://github.com/BlueBrain/nmodl/
-- --------------------+--------------------------------------------------------
-- 
-- 
-- CoreNEURON is enabled with following build configuration:
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Build Type          | SHARED
-- MPI                 | ON
--   DYNAMIC           | OFF
--   INC               | /opt/homebrew/Cellar/open-mpi/5.0.1/include
-- OpenMP              | ON
-- NMODL PATH          | /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/bin/nmodl
-- NMODL FLAGS         | 
-- GPU Support         | OFF
-- Auto Timeout        | ON
-- Wrap exp()          | OFF
-- SplayTree Queue     | ON
-- NetReceive Buffer   | ON
-- Caliper             | OFF
-- Likwid              | OFF
-- Unit Tests          | ON
-- Reporting           | OFF
-- --------------------+--------------------------------------------------------
-- 
Extracting link flags from target 'nrngnu', beware that this can be fragile. Got: 
Extracting link flags from target 'sparse13', beware that this can be fragile. Got: 
Generating link flags from name 'nrnpython', beware that this can be fragile. Got: -lnrnpython
Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: -lnrnpython
Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
-- Sub-project : using catch2 from from /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/external/catch2
-- Found Python module 'pytest' with version(s): 8.1.1
-- Found Python module 'pytest_cov' with version(s): 5.0.0
-- 3rd party project: using rxd/testdata from "test/rxd/testdata"
-- Found Python module 'mpi4py' with version(s): 3.1.6
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_nmodlrandom_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_nmodlrandom_syntax_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::array_variable_transfer_file_mode_py_gpu: gpu not enabled
-- Found Python module 'mpi4py' with version(s): 3.1.6
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled
-- 
-- Configured NEURON 9.0.0
-- 
-- You can now build NEURON using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------+--------------------------------------------------------------
--  Target       |   Description
-- --------------+--------------------------------------------------------------
-- install       | Will install NEURON to: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install
--               | Change the install location of NEURON using:
--               |   cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path>
-- docs          | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean
-- uninstall     | Removes files installed by make install (todo)
-- --------------+--------------------------------------------------------------
--  Build option | Status
-- --------------+--------------------------------------------------------------
-- C COMPILER    | /usr/bin/gcc
-- CXX COMPILER  | /usr/bin/g++
-- BUILD_TYPE    | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug)
-- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd
-- Shared        | ON
-- MPI           | ON
--   DYNAMIC     | OFF
--   INC         | /opt/homebrew/Cellar/open-mpi/5.0.1/include
--   LIB         | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Python        | ON
--   DYNAMIC     | OFF
--   MODULE      | ON
--  python3.10 (default)
--   EXE         | /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/bin/python
--   INC         | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10
--   LIB         | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- Readline      | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd
-- Curses        | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd
-- RX3D          | OFF
-- Interviews    | OFF
-- CoreNEURON    | ON
--   PATH        | /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/src/coreneuron
--   LINK FLAGS  |  -lcorenrnmech  -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Tests         | ON
-- --------------+--------------------------------------------------------------
--  See documentation : https://www.neuron.yale.edu/neuron/
-- --------------+--------------------------------------------------------------
-- 
-- Configuring done (3.4s)
-- Generating done (0.2s)
-- Build files have been written to: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build
[0/2] Re-checking globbed directories...
[1/6] Update hh.mod for CoreNEURON compatibility
[2/6] Generating help_data.dat
[3/6] cd /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[4/6] cd /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/src/nrniv && true
[5/6] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS,CORENRN_BUILD=0
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
Traceback (most recent call last):
  File "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject
    section = defn.get("tool", {})[tool_name]
KeyError: 'setuptools_scm'
/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:167: UserWarning: "/Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/utils/coreneuron_available.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:running build_scripts
[5/6] Install the project...
-- Install configuration: "Custom"
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/bin/nrn-enable-sanitizer
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/libsymtab.a
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/librxdmath.dylib
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/libnrniv.dylib
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/libnrngnu.a
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/libvisitor.a
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/python
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/python/neuron
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/python/neuron/hclass3.py
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/python/neuron/hoc.cpython-310-darwin.so
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/python/neuron/expect_hocerr.py
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/python/neuron/psection.py
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/python/neuron/neuroml
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/python/neuron/neuroml/metadata.py
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-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/network/netpar.hpp
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-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/phase3.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils
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-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include//coreneuron/permute/data_layout.hpp
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/share/coreneuron/mod_func.c.pl
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/share/coreneuron/enginemech.cpp
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/bin/nmodl
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/bin/nrniv-core
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/share/coreneuron/coreneuron.cpp
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/libcorenrnmech_internal.dylib
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/neuron
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/neuron/cache
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/neuron/cache/mechanism_range.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/neuron/container
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/neuron/container/non_owning_soa_identifier.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/neuron/container/data_handle.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/neuron/container/generic_data_handle.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/neuron/model_data_fwd.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrnrandom.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/hocassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/multicore.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/wrap_sprintf.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/simeq.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/ocmisc.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/multisplit.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/oc_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/hoclist.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/membfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/neuronapi.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrnversionmacros.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/scoplib.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/sparse.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/membdef.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/neuron.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/newton
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/newton/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrncvode
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrncvode/nrnneosm.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/bbsavestate.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nmodlmutex.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/euler_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/hocdec.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/hocgetsym.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/euler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/options.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/CholmodSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/StdVector
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/StdDeque
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Core
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/SparseLU
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/QtAlignedMalloc
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Householder
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/PardisoSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Dense
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/QR
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Eigen
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/SparseQR
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/SVD
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/LU
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Sparse
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/StdList
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/CholmodSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/CholmodSupport/CholmodSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc/blas.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc/Kernel.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc/RealSvd2x2.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc/Image.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc/lapack.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke_mangling.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Reverse.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/ConditionEstimator.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/PermutationMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Assign.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/MathFunctionsImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseUnaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/DiagonalMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/StlIterators.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/VectorBlock.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/ReturnByValue.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Solve.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointRank2Update.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/Parallelizer.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverVector.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/ArithmeticSequence.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Product.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/NonMPL2.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ReshapedHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/BlasUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/StaticAssert.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Constants.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/XprHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/MKL_support.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Macros.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/DisableStupidWarnings.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/SymbolicIndex.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ForwardDeclarations.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Memory.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Meta.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ConfigureVectorization.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/IntegralConstant.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ReenableStupidWarnings.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/IndexedViewHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/MatrixBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Stride.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Map.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/ForceAlignedAccess.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/functors
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/UnaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/TernaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/AssignmentFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/BinaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/StlFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/NullaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/SelfCwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/BandMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Inverse.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Assign_MKL.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Swap.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/ProductEvaluators.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/MapBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Matrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/EigenBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/StableNorm.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/GenericPacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Visitor.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseStorage.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/DiagonalProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseUnaryView.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/NoAlias.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseCoeffsBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/PartialReduxEvaluator.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/IndexedView.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Fuzzy.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/TriangularMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/IO.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/CUDA
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/CUDA/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/Half.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/Settings.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/BFloat16.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctionsFwd.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/ConjHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc/math_constants.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/SyclMemoryModel.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/InteropHeaders.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProductCommon.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Array.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/SolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/AssignEvaluator.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Replicate.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/CoreIterators.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/ArrayBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Block.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Dot.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/PlainObjectBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/SelfAdjointView.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/GeneralProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/SolveTriangular.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/CoreEvaluators.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseNullaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/VectorwiseOp.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/ArrayWrapper.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/BooleanRedux.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Transpositions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/NestByValue.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Ref.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Reshaped.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Transpose.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Redux.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/NumTraits.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/CommaInitializer.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/GlobalFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Random.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Diagonal.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseTernaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Select.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Utils.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_kernel_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_gemm_kernel.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_dfs.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_dfs.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Structs.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pruneL.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Memory.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pivotL.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLUImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Ordering.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Eigen_Colamd.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Amd.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/plugins
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/plugins/BlockMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/plugins/IndexedViewMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/plugins/ReshapedMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Householder
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Householder/HouseholderSequence.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Householder/Householder.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Householder/BlockHouseholder.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport/PardisoSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSelfAdjointView.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/CompressedStorage.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseView.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseColEtree.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrixBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDiagonalProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTriangularView.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseAssign.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparsePermutation.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMap.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDenseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRef.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseFuzzy.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/MappedSparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseBlock.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/TriangularSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseVector.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCompressedBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTranspose.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/AmbiVector.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRedux.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDot.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Jacobi/Jacobi.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/QR
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/QR/FullPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseQR
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseQR/SparseQR.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SVD
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SVD/SVDBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SVD/BDCSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SVD/UpperBidiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LDLT.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport/UmfPackSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/LU
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/LU/arch
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AngleAxis.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Quaternion.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Rotation2D.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport/MetisSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/StlSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrnapi.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrncvode.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrnsemanticversion.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/spmatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/ocfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/section_fwd.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/row_view.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/hoc_membf.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/backtrace_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrnisaac.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/parse_with_deps.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrnredef.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/dimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/hoc.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrniv_mf.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/memory.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrn_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/deflate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/errcodes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/nrniv
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/engine.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/gpu
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mechanism
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mpi/lib
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/config
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/phase3.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrnassrt.h
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-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/nrnoc_ml.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/mech_api.h
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-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Random123
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-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h
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-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Random123/philox.h
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-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Random123/MicroURNG.hpp
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-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/crout
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-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/treeset.h
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/share/modfile
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-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/share/coreneuron/nrnivmodl_core_makefile
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/bin/nrnivmodl-core
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/bin/nrniv
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/bin/nocmodl
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/bin/modlunit
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-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/share/nrn/nrnmain.cpp
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/bin/nrngui
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/bin/neurondemo
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/bin/nrnivmodl
-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/bin/nrnmech_makefile
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-- Installing: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/bin/set_nrnpyenv.sh
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-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/python/neuron
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-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/python/neuron/neuroml/biophysics.py
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-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/lib/python/neuron/rxd
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-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/CholmodSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/StdVector
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/StdDeque
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Core
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/SparseLU
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/QtAlignedMalloc
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Householder
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/PardisoSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Dense
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/QR
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Eigen
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/SparseQR
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/SVD
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/LU
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Sparse
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/StdList
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/CholmodSupport
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/CholmodSupport/CholmodSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc/blas.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc/Kernel.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc/RealSvd2x2.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc/Image.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc/lapack.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke_mangling.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Reverse.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/ConditionEstimator.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/PermutationMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Assign.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/MathFunctionsImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseUnaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/DiagonalMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/StlIterators.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/VectorBlock.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/ReturnByValue.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Solve.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointRank2Update.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/Parallelizer.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverVector.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/ArithmeticSequence.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Product.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/NonMPL2.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ReshapedHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/BlasUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/StaticAssert.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Constants.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/XprHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/MKL_support.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Macros.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/DisableStupidWarnings.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/SymbolicIndex.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ForwardDeclarations.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Memory.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Meta.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ConfigureVectorization.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/IntegralConstant.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ReenableStupidWarnings.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/util/IndexedViewHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/MatrixBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Stride.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Map.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/ForceAlignedAccess.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/functors
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/UnaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/TernaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/AssignmentFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/BinaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/StlFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/NullaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/SelfCwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/BandMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Inverse.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Assign_MKL.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Swap.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/ProductEvaluators.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/MapBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Matrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/EigenBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/StableNorm.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/GenericPacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Visitor.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseStorage.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/DiagonalProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseUnaryView.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/NoAlias.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseCoeffsBase.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/PartialReduxEvaluator.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/IndexedView.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/Fuzzy.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/TriangularMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/IO.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/2/P218299/J1326944/hpc/cellular/nrn/install/inclu

spack-setup.txt

test-neuron-nmodl-intel-legacy.txt

test-neuron-nmodl-intel-shared.txt

test-neuron-nmodl-nvhpc-acc-legacy.txt

test-neuron-nmodl-nvhpc-acc-shared.txt

test-neuron-nmodl-nvhpc-omp-legacy.txt

test-neuron-nmodl-nvhpc-omp.txt