bbpbuildbot/GitLab logs for neuronsimulator-nrn#2247 Secret

## build-neuron-nmodl-intel-legacy.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1685108632:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1685108632:resolve_secrets
[0Ksection_start:1685108632:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2647076782, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 126882, build ref a47fc656b14b510c2816f91cffe593818424e013, job ID 730229
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J730229_PROD_P2160_CP3_C2
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1526498
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J730229_PROD_P2160_CP3_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --ntasks=2 --jobid=1526498 --cpus-per-task=8 --mem=76G
section_end:1685108634:prepare_executor
[0Ksection_start:1685108634:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n30 via bbpv1.epfl.ch...
section_end:1685108637:prepare_script
[0Ksection_start:1685108637:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1685108638:get_sources
[0Ksection_start:1685108638:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:intel:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=207572 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1685108645:restore_cache
[0Ksection_start:1685108645:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (730228)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=208130 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=730228 responseStatus[0;m=200 OK token[0;m=64_tkqBa
section_end:1685108646:download_artifacts
[0Ksection_start:1685108646:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730229/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730229/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730229/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730229/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730229/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730229/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882/J730229_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/yi5txhxeaowqcupzdwpzyit67gpbxopq
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1526498/ccache
  Primary config:   /nvme/bbpcihpcproj12/1526498/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Fri May 26 15:44:10 2023
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.47 / 0.51 (92.08 %)
  Files:            25912
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   ypv6wkl  neuron@develop%oneapi@2022.2.1~caliper~codegenopt+coreneuron~gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3gsnkau      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  7pokw4h      ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
 -   dvav7kc      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  einzmbz          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  xfi3vdr          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  yi5txhx      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]  7v6k26x          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  t7yyhxk          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  ee7ugzv          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  hexz5ps      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tm6pmld      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  qlx2hcg      ^reportinglib@2.5.6%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/reportinglib-2.5.6-qlx2hc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
==> Installing libsonata-report-develop-dvav7kcoa4bw2beztpa4apwx6uizgkcn
==> No binary for libsonata-report-develop-dvav7kcoa4bw2beztpa4apwx6uizgkcn found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-develop-dvav7kcoa4bw2beztpa4apwx6uizgkcn
  Fetch: 2.37s.  Build: 5.10s.  Total: 7.47s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/libsonata-report-develop-dvav7k
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/nmodl-develop-yi5txh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
==> Installing neuron-develop-ypv6wkljho4scsq45ttwtmfbequvd734
==> No binary for neuron-develop-ypv6wkljho4scsq45ttwtmfbequvd734 found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-ypv6wkljho4scsq45ttwtmfbequvd734
  Fetch: 22.93s.  Build: 21m 28.45s.  Total: 21m 51.39s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_oneapi-2022.2.1-skylake/neuron-develop-ypv6wk
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be ypv6wkljho4scsq45ttwtmfbequvd734
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1526498/ccache
  Primary config:           /nvme/bbpcihpcproj12/1526498/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Fri May 26 16:08:37 2023
  Hits:                       862 /  962 (89.60 %)
    Direct:                   333 /  971 (34.29 %)
    Preprocessed:             529 /  632 (83.70 %)
  Misses:                     100
    Direct:                   638
    Preprocessed:             103
  Uncacheable:               1048
Primary storage:
  Hits:                      1544 / 1936 (79.75 %)
  Misses:                     392
  Cache size (GB):           0.46 / 0.51 (90.52 %)
  Files:                    25468
  Cleanups:                     2
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:        1013
  Called for preprocessing:     1
  Compilation failed:           3
  No input file:               18
  Preprocessing failed:         6
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1685110122:step_script
[0Ksection_start:1685110122:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:intel:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=249970 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1685110141:archive_cache
[0Ksection_start:1685110141:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=250208 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=730229 responseStatus[0;m=201 Created token[0;m=64_tkqBa
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=250251 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=730229 responseStatus[0;m=201 Created token[0;m=64_tkqBa
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=250290 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=730229 responseStatus[0;m=201 Created token[0;m=64_tkqBa
section_end:1685110143:upload_artifacts_on_success
[0Ksection_start:1685110143:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1685110144:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-intel-shared.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1685108633:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1685108633:resolve_secrets
[0Ksection_start:1685108633:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3095589160, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 126882, build ref a47fc656b14b510c2816f91cffe593818424e013, job ID 730230
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J730230_PROD_P2160_CP9_C5
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1526499
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J730230_PROD_P2160_CP9_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --ntasks=2 --jobid=1526499 --cpus-per-task=8 --mem=76G
section_end:1685108634:prepare_executor
[0Ksection_start:1685108634:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n30 via bbpv1.epfl.ch...
section_end:1685108637:prepare_script
[0Ksection_start:1685108637:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1685108638:get_sources
[0Ksection_start:1685108638:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:intel:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=207651 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1685108645:restore_cache
[0Ksection_start:1685108645:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (730228)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=208232 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=730228 responseStatus[0;m=200 OK token[0;m=64_T6oyD
section_end:1685108646:download_artifacts
[0Ksection_start:1685108646:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730230/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730230/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730230/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730230/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730230/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730230/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882/J730230_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/yi5txhxeaowqcupzdwpzyit67gpbxopq
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1526499/ccache
  Primary config:   /nvme/bbpcihpcproj12/1526499/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Fri May 26 15:44:11 2023
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.47 / 0.51 (92.05 %)
  Files:            25889
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   7fsed6g  neuron@develop%oneapi@2022.2.1~caliper~codegenopt+coreneuron~gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3gsnkau      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  7pokw4h      ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
 -   dvav7kc      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  einzmbz          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  xfi3vdr          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  yi5txhx      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]  7v6k26x          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  t7yyhxk          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  ee7ugzv          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  hexz5ps      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tm6pmld      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  qlx2hcg      ^reportinglib@2.5.6%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/reportinglib-2.5.6-qlx2hc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/nmodl-develop-yi5txh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/libsonata-report-develop-dvav7k
==> Installing neuron-develop-7fsed6gezgnzt7mt3uaod6doiyyki6x5
==> No binary for neuron-develop-7fsed6gezgnzt7mt3uaod6doiyyki6x5 found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-7fsed6gezgnzt7mt3uaod6doiyyki6x5
  Fetch: 43.27s.  Build: 28m 19.45s.  Total: 29m 2.71s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_oneapi-2022.2.1-skylake/neuron-develop-7fsed6
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be 7fsed6gezgnzt7mt3uaod6doiyyki6x5
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1526499/ccache
  Primary config:           /nvme/bbpcihpcproj12/1526499/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Fri May 26 16:15:35 2023
  Hits:                       840 /  940 (89.36 %)
    Direct:                   310 /  949 (32.67 %)
    Preprocessed:             530 /  633 (83.73 %)
  Misses:                     100
    Direct:                   639
    Preprocessed:             103
  Uncacheable:               1044
Primary storage:
  Hits:                      1499 / 1892 (79.23 %)
  Misses:                     393
  Cache size (GB):           0.46 / 0.51 (90.48 %)
  Files:                    25440
  Cleanups:                     2
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:        1019
  Called for preprocessing:     1
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         6
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1685110537:step_script
[0Ksection_start:1685110537:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:intel:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=256365 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Ashared-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1685110557:archive_cache
[0Ksection_start:1685110557:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=256571 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=730230 responseStatus[0;m=201 Created token[0;m=64_T6oyD
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=256614 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=730230 responseStatus[0;m=201 Created token[0;m=64_T6oyD
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=256654 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=730230 responseStatus[0;m=201 Created token[0;m=64_T6oyD
section_end:1685110559:upload_artifacts_on_success
[0Ksection_start:1685110559:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1685110560:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-acc-legacy.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1685108633:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1685108633:resolve_secrets
[0Ksection_start:1685108633:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3589409541, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 126882, build ref a47fc656b14b510c2816f91cffe593818424e013, job ID 730231
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J730231_PROD_P2160_CP10_C14
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1526500
job state: PD
job state: PD
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J730231_PROD_P2160_CP10_C14 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --ntasks=2 --jobid=1526500 --cpus-per-task=8 --mem=76G
section_end:1685108639:prepare_executor
[0Ksection_start:1685108639:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n30 via bbpv1.epfl.ch...
section_end:1685108645:prepare_script
[0Ksection_start:1685108645:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1685108646:get_sources
[0Ksection_start:1685108646:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=208938 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1685108652:restore_cache
[0Ksection_start:1685108652:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (730228)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=209834 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=730228 responseStatus[0;m=200 OK token[0;m=64_-xQjr
section_end:1685108654:download_artifacts
[0Ksection_start:1685108654:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730231/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730231/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730231/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730231/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730231/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730231/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882/J730231_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/yi5txhxeaowqcupzdwpzyit67gpbxopq
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1526500/ccache
  Primary config:   /nvme/bbpcihpcproj12/1526500/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Fri May 26 15:44:18 2023
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.46 / 0.51 (90.20 %)
  Files:            26547
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   3p2cjle  neuron@develop%nvhpc@23.1~caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3gsnkau      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  ajstvdu      ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  7pokw4h      ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
 -   dvav7kc      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  einzmbz          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  xfi3vdr          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  yi5txhx      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]  7v6k26x          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  t7yyhxk          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  ee7ugzv          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  hexz5ps      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tm6pmld      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  qlx2hcg      ^reportinglib@2.5.6%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/reportinglib-2.5.6-qlx2hc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/libsonata-report-develop-dvav7k
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/nmodl-develop-yi5txh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
==> Installing neuron-develop-3p2cjleow6dyaowl4rxz36zhc24vg4pw
==> No binary for neuron-develop-3p2cjleow6dyaowl4rxz36zhc24vg4pw found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-3p2cjleow6dyaowl4rxz36zhc24vg4pw
  Fetch: 19.77s.  Build: 47m 22.66s.  Total: 47m 42.42s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_nvhpc-23.1-skylake/neuron-develop-3p2cjl
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be 3p2cjleow6dyaowl4rxz36zhc24vg4pw
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1526500/ccache
  Primary config:           /nvme/bbpcihpcproj12/1526500/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Fri May 26 16:34:12 2023
  Hits:                       840 /  977 (85.98 %)
    Direct:                   310 /  948 (32.70 %)
    Preprocessed:             530 /  632 (83.86 %)
  Misses:                     137
    Direct:                   638
    Preprocessed:             102
  Uncacheable:                140
Primary storage:
  Hits:                      1499 / 1890 (79.31 %)
  Misses:                     391
  Cache size (GB):           0.45 / 0.51 (88.74 %)
  Files:                    26175
  Cleanups:                     2
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         114
  Called for preprocessing:     2
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         6
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1685111656:step_script
[0Ksection_start:1685111656:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=296242 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Alegacy-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1685111674:archive_cache
[0Ksection_start:1685111674:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=296511 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=730231 responseStatus[0;m=201 Created token[0;m=64_-xQjr
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=296551 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=730231 responseStatus[0;m=201 Created token[0;m=64_-xQjr
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=296592 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=730231 responseStatus[0;m=201 Created token[0;m=64_-xQjr
section_end:1685111676:upload_artifacts_on_success
[0Ksection_start:1685111676:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1685111677:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-acc-shared.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1685108634:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1685108634:resolve_secrets
[0Ksection_start:1685108634:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2541821319, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 126882, build ref a47fc656b14b510c2816f91cffe593818424e013, job ID 730232
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J730232_PROD_P2160_CP11_C15
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1526501
job state: PD
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J730232_PROD_P2160_CP11_C15 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --ntasks=2 --jobid=1526501 --cpus-per-task=8 --mem=76G
section_end:1685108638:prepare_executor
[0Ksection_start:1685108638:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n30 via bbpv1.epfl.ch...
section_end:1685108645:prepare_script
[0Ksection_start:1685108645:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1685108646:get_sources
[0Ksection_start:1685108646:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=208982 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1685108652:restore_cache
[0Ksection_start:1685108652:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (730228)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=209742 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=730228 responseStatus[0;m=200 OK token[0;m=64_ctAo2
section_end:1685108653:download_artifacts
[0Ksection_start:1685108653:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730232/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730232/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730232/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730232/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730232/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730232/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882/J730232_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/yi5txhxeaowqcupzdwpzyit67gpbxopq
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1526501/ccache
  Primary config:   /nvme/bbpcihpcproj12/1526501/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Fri May 26 15:44:18 2023
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.45 / 0.51 (87.76 %)
  Files:            25860
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   e3uvhwv  neuron@develop%nvhpc@23.1~caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3gsnkau      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  ajstvdu      ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  7pokw4h      ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
 -   dvav7kc      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  einzmbz          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  xfi3vdr          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  yi5txhx      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]  7v6k26x          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  t7yyhxk          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  ee7ugzv          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  hexz5ps      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tm6pmld      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  qlx2hcg      ^reportinglib@2.5.6%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/reportinglib-2.5.6-qlx2hc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/libsonata-report-develop-dvav7k
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/nmodl-develop-yi5txh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
==> Installing neuron-develop-e3uvhwv4426airkdlkbyalyt3hdfxb2k
==> No binary for neuron-develop-e3uvhwv4426airkdlkbyalyt3hdfxb2k found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-e3uvhwv4426airkdlkbyalyt3hdfxb2k
  Fetch: 20.82s.  Build: 47m 52.75s.  Total: 48m 13.58s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_nvhpc-23.1-skylake/neuron-develop-e3uvhw
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be e3uvhwv4426airkdlkbyalyt3hdfxb2k
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1526501/ccache
  Primary config:           /nvme/bbpcihpcproj12/1526501/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Fri May 26 16:34:41 2023
  Hits:                       840 / 1037 (81.00 %)
    Direct:                   310 /  948 (32.70 %)
    Preprocessed:             530 /  632 (83.86 %)
  Misses:                     197
    Direct:                   638
    Preprocessed:             102
  Uncacheable:                149
Primary storage:
  Hits:                      1499 / 1890 (79.31 %)
  Misses:                     391
  Cache size (GB):           0.46 / 0.51 (88.88 %)
  Files:                    26354
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         123
  Called for preprocessing:     2
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         6
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1685111684:step_script
[0Ksection_start:1685111684:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=297081 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Ashared-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1685111705:archive_cache
[0Ksection_start:1685111705:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=297610 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=730232 responseStatus[0;m=201 Created token[0;m=64_ctAo2
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=297660 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=730232 responseStatus[0;m=201 Created token[0;m=64_ctAo2
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=297700 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=730232 responseStatus[0;m=201 Created token[0;m=64_ctAo2
section_end:1685111708:upload_artifacts_on_success
[0Ksection_start:1685111708:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1685111709:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-omp-legacy.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1685108634:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1685108634:resolve_secrets
[0Ksection_start:1685108634:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1044690730, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 126882, build ref a47fc656b14b510c2816f91cffe593818424e013, job ID 730233
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J730233_PROD_P2160_CP12_C16
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1526502
job state: PD
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J730233_PROD_P2160_CP12_C16 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --ntasks=2 --jobid=1526502 --cpus-per-task=8 --mem=76G
section_end:1685108639:prepare_executor
[0Ksection_start:1685108639:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i6n24 via bbpv1.epfl.ch...
section_end:1685108644:prepare_script
[0Ksection_start:1685108644:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1685108645:get_sources
[0Ksection_start:1685108645:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=270294 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1685108651:restore_cache
[0Ksection_start:1685108651:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (730228)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=270509 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=730228 responseStatus[0;m=200 OK token[0;m=64_RCJQ1
section_end:1685108652:download_artifacts
[0Ksection_start:1685108652:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730233/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730233/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730233/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730233/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730233/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730233/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882/J730233_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70  ^/yi5txhxeaowqcupzdwpzyit67gpbxopq
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1526502/ccache
  Primary config:   /nvme/bbpcihpcproj12/1526502/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Fri May 26 15:44:18 2023
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.47 / 0.51 (91.32 %)
  Files:            25923
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^caliper+cuda cuda_arch=70
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   252ma5c  neuron@develop%nvhpc@23.1+caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3gsnkau      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  c3723hn      ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake
[^]  pcfmpqe          ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  7yt5klx          ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake
[^]  zttduab              ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  ja6blio          ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^]  3gsobub          ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  ajstvdu      ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  7pokw4h      ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
 -   dvav7kc      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  einzmbz          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  xfi3vdr          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  yi5txhx      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]  7v6k26x          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  t7yyhxk          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  ee7ugzv          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  hexz5ps      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tm6pmld      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  qlx2hcg      ^reportinglib@2.5.6%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
[+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/reportinglib-2.5.6-qlx2hc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-pcfmpq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/libsonata-report-develop-dvav7k
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-c3723h
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/nmodl-develop-yi5txh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
==> Installing neuron-develop-252ma5czciokeox3xjylqlegurae2nhe
==> No binary for neuron-develop-252ma5czciokeox3xjylqlegurae2nhe found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-252ma5czciokeox3xjylqlegurae2nhe
  Fetch: 21.34s.  Build: 38m 30.22s.  Total: 38m 51.57s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_nvhpc-23.1-skylake/neuron-develop-252ma5
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be 252ma5czciokeox3xjylqlegurae2nhe
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1526502/ccache
  Primary config:           /nvme/bbpcihpcproj12/1526502/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Fri May 26 16:25:12 2023
  Hits:                       840 /  987 (85.11 %)
    Direct:                   310 /  950 (32.63 %)
    Preprocessed:             530 /  634 (83.60 %)
  Misses:                     147
    Direct:                   640
    Preprocessed:             104
  Uncacheable:                142
Primary storage:
  Hits:                      1499 / 1894 (79.14 %)
  Misses:                     395
  Cache size (GB):           0.47 / 0.51 (92.39 %)
  Files:                    26355
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         116
  Called for preprocessing:     2
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         6
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1685111113:step_script
[0Ksection_start:1685111113:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=20854 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1685111136:archive_cache
[0Ksection_start:1685111136:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=22047 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=730233 responseStatus[0;m=201 Created token[0;m=64_RCJQ1
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=22149 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=730233 responseStatus[0;m=201 Created token[0;m=64_RCJQ1
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=22203 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=730233 responseStatus[0;m=201 Created token[0;m=64_RCJQ1
section_end:1685111138:upload_artifacts_on_success
[0Ksection_start:1685111138:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1685111139:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-omp.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1685108635:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1685108635:resolve_secrets
[0Ksection_start:1685108635:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1109640211, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 126882, build ref a47fc656b14b510c2816f91cffe593818424e013, job ID 730234
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J730234_PROD_P2160_CP13_C18
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1526503
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J730234_PROD_P2160_CP13_C18 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --ntasks=2 --jobid=1526503 --cpus-per-task=8 --mem=76G
section_end:1685108638:prepare_executor
[0Ksection_start:1685108638:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i6n24 via bbpv1.epfl.ch...
section_end:1685108644:prepare_script
[0Ksection_start:1685108644:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1685108645:get_sources
[0Ksection_start:1685108645:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=270254 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1685108651:restore_cache
[0Ksection_start:1685108651:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (730228)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=270461 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=730228 responseStatus[0;m=200 OK token[0;m=64_ZMpBx
section_end:1685108652:download_artifacts
[0Ksection_start:1685108652:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730234/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730234/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730234/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730234/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730234/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730234/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882/J730234_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70  ^/yi5txhxeaowqcupzdwpzyit67gpbxopq
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1526503/ccache
  Primary config:   /nvme/bbpcihpcproj12/1526503/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Fri May 26 15:44:18 2023
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.46 / 0.51 (89.64 %)
  Files:            25210
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^caliper+cuda cuda_arch=70
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   zps3aqc  neuron@develop%nvhpc@23.1+caliper~codegenopt+coreneuron+gpu~interviews~ipo~knl+legacy-fr~legacy-unit+memacs+mod-compatibility+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy patches=708cb04 sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3gsnkau      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex~serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  c3723hn      ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake
[^]  pcfmpqe          ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  7yt5klx          ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake
[^]  zttduab              ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  ja6blio          ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^]  3gsobub          ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  ajstvdu      ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  7pokw4h      ^hpe-mpi@2.25.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
 -   dvav7kc      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  einzmbz          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  xfi3vdr          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  yi5txhx      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[+]  7v6k26x          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  t7yyhxk          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  ee7ugzv          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  hexz5ps      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  tm6pmld      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  qlx2hcg      ^reportinglib@2.5.6%gcc@12.2.0~ipo~profile+shared~tests build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-3bzblf (external boost-1.80.0-3gsnkau2ceycwyu2nn7tdokqdxy6c3gx)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> hpe-mpi@2.25.hmpt : has external module in ['hpe-mpi/2.25.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.25.hmpt-mgws7w (external hpe-mpi-2.25.hmpt-7pokw4hzcta7cdqxtydumij6gt5w4ilc)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
[+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/reportinglib-2.5.6-qlx2hc
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-pcfmpq
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-einzmb
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-hexz5p
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/libsonata-report-develop-dvav7k
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-c3723h
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/nmodl-develop-yi5txh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-tm6pml
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
==> Installing neuron-develop-zps3aqccn5i6sfj4v4eyf63dsovfrtzn
==> No binary for neuron-develop-zps3aqccn5i6sfj4v4eyf63dsovfrtzn found: installing from source
==> Applied patch /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/bluebrain/repo-patches/packages/neuron/revert_Import3d_numerical_format.master.patch
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-zps3aqccn5i6sfj4v4eyf63dsovfrtzn
  Fetch: 20.08s.  Build: 38m 9.20s.  Total: 38m 29.28s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_nvhpc-23.1-skylake/neuron-develop-zps3aq
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be zps3aqccn5i6sfj4v4eyf63dsovfrtzn
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1526503/ccache
  Primary config:           /nvme/bbpcihpcproj12/1526503/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Fri May 26 16:24:51 2023
  Hits:                       840 /  987 (85.11 %)
    Direct:                   310 /  950 (32.63 %)
    Preprocessed:             530 /  634 (83.60 %)
  Misses:                     147
    Direct:                   640
    Preprocessed:             104
  Uncacheable:                142
Primary storage:
  Hits:                      1499 / 1894 (79.14 %)
  Misses:                     395
  Cache size (GB):           0.46 / 0.51 (90.72 %)
  Files:                    25641
Uncacheable:
  Autoconf compile/link:        7
  Called for linking:         116
  Called for preprocessing:     2
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         6
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1685111093:step_script
[0Ksection_start:1685111093:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=19424 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1685111113:archive_cache
[0Ksection_start:1685111113:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=20891 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=730234 responseStatus[0;m=201 Created token[0;m=64_ZMpBx
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=20933 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=730234 responseStatus[0;m=201 Created token[0;m=64_ZMpBx
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=20973 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=730234 responseStatus[0;m=201 Created token[0;m=64_ZMpBx
section_end:1685111116:upload_artifacts_on_success
[0Ksection_start:1685111116:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1685111118:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-nmodl.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1685108308:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1685108308:resolve_secrets
[0Ksection_start:1685108308:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1352446747, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 126882, build ref a47fc656b14b510c2816f91cffe593818424e013, job ID 730228
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J730228_PROD_P2160_CP3_C5
Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1526472
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J730228_PROD_P2160_CP3_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --ntasks=2 --jobid=1526472 --cpus-per-task=8 --mem=76G
section_end:1685108309:prepare_executor
[0Ksection_start:1685108309:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n30 via bbpv1.epfl.ch...
section_end:1685108311:prepare_script
[0Ksection_start:1685108311:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1685108312:get_sources
[0Ksection_start:1685108312:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:nmodl-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=203203 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1685108317:restore_cache
[0Ksection_start:1685108317:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for spack_setup (730226)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=203307 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=730226 responseStatus[0;m=200 OK token[0;m=64_ex3GA
section_end:1685108319:download_artifacts
[0Ksection_start:1685108319:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                            config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730228/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730228/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730228/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730228/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730228/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                             install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                               root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                               projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                             environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                             build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 300
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                         debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730228/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882/J730228_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install nmodl%gcc ~legacy-unit
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1526472/ccache
  Primary config:   /nvme/bbpcihpcproj12/1526472/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Fri May 26 15:38:43 2023
  Hits:                0 /    0
    Direct:            0 /    0
    Preprocessed:      0 /    0
  Misses:              0
    Direct:            0
    Preprocessed:      0
Primary storage:
  Hits:                0 /    0
  Misses:              0
  Cache size (GB):  0.44 / 0.51 (85.95 %)
  Files:            1051
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   nmodl%gcc~legacy-unit

Concretized
--------------------------------
 -   yi5txhx  nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
 -   7v6k26x      ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to      ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  t7yyhxk      ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ee7ugzv      ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck      ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f          ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb          ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  pi3gdaj      ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  gv336wl      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h          ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki              ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  d7dkmvv                  ^py-flit-core@3.7.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4kxd5n3          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  jrwy3zz          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  zbqiukk          ^py-setuptools-scm@7.0.5%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  ihcuyox              ^py-typing-extensions@4.3.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  d4xzk5t      ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub          ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  d5vf2au      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  7rza5j7          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  xfi3vdr      ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
==> Installing catch2-3.0.1-7v6k26xsg7vuip4riuwzc7k4efieigu2
==> No binary for catch2-3.0.1-7v6k26xsg7vuip4riuwzc7k4efieigu2 found: installing from source
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882, but it is owned by 0
==> Fetching https://mirror.spack.io/_source-cache/archive/8c/8c4173c68ae7da1b5b505194a0c2d6f1b2aef4ec1e3e7463bde451f26bbaf4e7.tar.gz
==> No patches needed for catch2
==> catch2: Executing phase: 'cmake'
==> catch2: Executing phase: 'build'
==> catch2: Executing phase: 'install'
==> catch2: Successfully installed catch2-3.0.1-7v6k26xsg7vuip4riuwzc7k4efieigu2
  Fetch: 0.17s.  Build: 3.36s.  Total: 3.53s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-flit-core-3.7.1-d7dkmv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-typing-extensions-4.3.0-ihcuyo
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-scm-7.0.5-zbqiuk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-7rza5j
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-4kxd5n
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-jrwy3z
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-d5vf2a
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-gv336w
==> Installing nmodl-develop-yi5txhxeaowqcupzdwpzyit67gpbxopq
==> No binary for nmodl-develop-yi5txhxeaowqcupzdwpzyit67gpbxopq found: installing from source
==> No patches needed for nmodl
==> nmodl: Executing phase: 'cmake'
==> nmodl: Executing phase: 'build'
==> nmodl: Executing phase: 'install'
==> nmodl: Successfully installed nmodl-develop-yi5txhxeaowqcupzdwpzyit67gpbxopq
  Fetch: 1m 29.34s.  Build: 1m 55.66s.  Total: 3m 25.00s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/software/install_gcc-12.2.0-skylake/nmodl-develop-yi5txh
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be yi5txhxeaowqcupzdwpzyit67gpbxopq
[32;1m$ SPACK_STAGE_DIR=${SPACK_BUILD}/spack-stage-${SPACK_PACKAGE}-develop-${SPACK_INSTALLED_HASH}[0;m
[32;1m$ SPACK_BUILD_DIR=${SPACK_STAGE_DIR}/spack-build-${SPACK_INSTALLED_HASH:0:7}[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:    /nvme/bbpcihpcproj12/1526472/ccache
  Primary config:     /nvme/bbpcihpcproj12/1526472/ccache/ccache.conf
  Secondary config:   /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:      Fri May 26 15:43:27 2023
  Hits:                206 /  208 (99.04 %)
    Direct:            104 /  208 (50.00 %)
    Preprocessed:      102 /  104 (98.08 %)
  Misses:                2
    Direct:            104
    Preprocessed:        2
  Uncacheable:          27
Primary storage:
  Hits:                310 /  416 (74.52 %)
  Misses:              106
  Cache size (GB):    0.44 / 0.51 (85.97 %)
  Files:              1055
Uncacheable:
  Called for linking:   25
  No input file:         2
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1685108608:step_script
[0Ksection_start:1685108608:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:nmodl-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=205946 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1685108627:archive_cache
[0Ksection_start:1685108627:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=206082 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=730228 responseStatus[0;m=201 Created token[0;m=64_ex3GA
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=206122 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=730228 responseStatus[0;m=201 Created token[0;m=64_ex3GA
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=206162 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=730228 responseStatus[0;m=201 Created token[0;m=64_ex3GA
section_end:1685108629:upload_artifacts_on_success
[0Ksection_start:1685108629:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1685108631:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## GitLab logs for neuronsimulator-nrn#2247
!

## mac-m1-cmake-build-cmake-on-off-off-address.txt
[0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m
[0K  on macos-arm64 vGzz-bdp[0;m
section_start:1685108113:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1685108113:resolve_secrets
[0Ksection_start:1685108113:prepare_executor
[0K[0K[36;1mPreparing the "shell" executor[0;m[0;m
[0KUsing Shell executor...[0;m
section_end:1685108113:prepare_executor
[0Ksection_start:1685108113:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on bbpmacglr01.bbp.epfl.ch...
section_end:1685108113:prepare_script
[0Ksection_start:1685108113:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mFetching changes with git depth set to 20...[0;m
Initialized empty Git repository in /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/.git/
[32;1mCreated fresh repository.[0;m
[32;1mChecking out a47fc656 as cornu/remove_mod2c...[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1685108116:get_sources
[0Ksection_start:1685108116:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-cornu/remove_mod2c-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=arm64 os[0;m=darwin pid[0;m=26859 revision[0;m=43b2dc3d version[0;m=15.4.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1685108134:restore_cache
[0Ksection_start:1685108134:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[32;1m$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ real_python=$(python3 resolve_shim.py)[0;m
[32;1m$ echo "python3=$(command -v python3) is really ${real_python}"[0;m
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.8/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python
[32;1m$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv[0;m
[32;1m$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt[0;m
Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (22.2.2)
Collecting pip
  Using cached pip-23.1.2-py3-none-any.whl (2.1 MB)
Collecting wheel
  Using cached wheel-0.40.0-py3-none-any.whl (64 kB)
Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (65.4.1)
Collecting setuptools
  Using cached setuptools-67.8.0-py3-none-any.whl (1.1 MB)
Collecting setuptools_scm
  Using cached setuptools_scm-7.1.0-py3-none-any.whl (43 kB)
Collecting scikit-build
  Using cached scikit_build-0.17.5-py3-none-any.whl (82 kB)
Collecting matplotlib
  Using cached matplotlib-3.7.1-cp310-cp310-macosx_11_0_arm64.whl (7.3 MB)
Collecting bokeh<3
  Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB)
Collecting ipython
  Using cached ipython-8.13.2-py3-none-any.whl (797 kB)
Collecting cython
  Using cached Cython-0.29.35-py2.py3-none-any.whl (988 kB)
Collecting packaging
  Using cached packaging-23.1-py3-none-any.whl (48 kB)
Collecting pytest
  Using cached pytest-7.3.1-py3-none-any.whl (320 kB)
Collecting pytest-cov
  Using cached pytest_cov-4.1.0-py3-none-any.whl (21 kB)
Collecting mpi4py
  Using cached mpi4py-3.1.4-cp310-cp310-macosx_12_0_arm64.whl
Collecting numpy
  Using cached numpy-1.24.3-cp310-cp310-macosx_11_0_arm64.whl (13.9 MB)
Collecting find_libpython
  Using cached find_libpython-0.3.0-py3-none-any.whl (8.5 kB)
Collecting typing-extensions
  Using cached typing_extensions-4.6.2-py3-none-any.whl (31 kB)
Collecting tomli>=1.0.0
  Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
Collecting distro
  Using cached distro-1.8.0-py3-none-any.whl (20 kB)
Collecting kiwisolver>=1.0.1
  Using cached kiwisolver-1.4.4-cp310-cp310-macosx_11_0_arm64.whl (63 kB)
Collecting contourpy>=1.0.1
  Using cached contourpy-1.0.7-cp310-cp310-macosx_11_0_arm64.whl (229 kB)
Collecting cycler>=0.10
  Using cached cycler-0.11.0-py3-none-any.whl (6.4 kB)
Collecting pillow>=6.2.0
  Using cached Pillow-9.5.0-cp310-cp310-macosx_11_0_arm64.whl (3.1 MB)
Collecting pyparsing>=2.3.1
  Using cached pyparsing-3.0.9-py3-none-any.whl (98 kB)
Collecting python-dateutil>=2.7
  Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
Collecting fonttools>=4.22.0
  Using cached fonttools-4.39.4-py3-none-any.whl (1.0 MB)
Collecting tornado>=5.1
  Using cached tornado-6.3.2-cp38-abi3-macosx_10_9_universal2.whl (424 kB)
Collecting PyYAML>=3.10
  Using cached PyYAML-6.0-cp310-cp310-macosx_11_0_arm64.whl (173 kB)
Collecting Jinja2>=2.9
  Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB)
Collecting stack-data
  Using cached stack_data-0.6.2-py3-none-any.whl (24 kB)
Collecting appnope
  Using cached appnope-0.1.3-py2.py3-none-any.whl (4.4 kB)
Collecting traitlets>=5
  Using cached traitlets-5.9.0-py3-none-any.whl (117 kB)
Collecting prompt-toolkit!=3.0.37,<3.1.0,>=3.0.30
  Using cached prompt_toolkit-3.0.38-py3-none-any.whl (385 kB)
Collecting pygments>=2.4.0
  Using cached Pygments-2.15.1-py3-none-any.whl (1.1 MB)
Collecting jedi>=0.16
  Using cached jedi-0.18.2-py2.py3-none-any.whl (1.6 MB)
Collecting pexpect>4.3
  Using cached pexpect-4.8.0-py2.py3-none-any.whl (59 kB)
Collecting pickleshare
  Using cached pickleshare-0.7.5-py2.py3-none-any.whl (6.9 kB)
Collecting backcall
  Using cached backcall-0.2.0-py2.py3-none-any.whl (11 kB)
Collecting decorator
  Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB)
Collecting matplotlib-inline
  Using cached matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB)
Collecting exceptiongroup>=1.0.0rc8
  Using cached exceptiongroup-1.1.1-py3-none-any.whl (14 kB)
Collecting iniconfig
  Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
Collecting pluggy<2.0,>=0.12
  Using cached pluggy-1.0.0-py2.py3-none-any.whl (13 kB)
Collecting coverage[toml]>=5.2.1
  Using cached coverage-7.2.6-cp310-cp310-macosx_11_0_arm64.whl (200 kB)
Collecting parso<0.9.0,>=0.8.0
  Using cached parso-0.8.3-py2.py3-none-any.whl (100 kB)
Collecting MarkupSafe>=2.0
  Using cached MarkupSafe-2.1.2-cp310-cp310-macosx_10_9_universal2.whl (17 kB)
Collecting ptyprocess>=0.5
  Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
Collecting wcwidth
  Using cached wcwidth-0.2.6-py2.py3-none-any.whl (29 kB)
Collecting six>=1.5
  Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting executing>=1.2.0
  Using cached executing-1.2.0-py2.py3-none-any.whl (24 kB)
Collecting asttokens>=2.1.0
  Using cached asttokens-2.2.1-py2.py3-none-any.whl (26 kB)
Collecting pure-eval
  Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB)
Installing collected packages: wcwidth, pure-eval, ptyprocess, pickleshare, find_libpython, executing, backcall, appnope, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pip, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, exceptiongroup, distro, decorator, cython, cycler, coverage, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython
  Attempting uninstall: setuptools
    Found existing installation: setuptools 65.4.1
    Uninstalling setuptools-65.4.1:
      Successfully uninstalled setuptools-65.4.1
  Attempting uninstall: pip
    Found existing installation: pip 22.2.2
    Uninstalling pip-22.2.2:
      Successfully uninstalled pip-22.2.2
Successfully installed Jinja2-3.1.2 MarkupSafe-2.1.2 PyYAML-6.0 appnope-0.1.3 asttokens-2.2.1 backcall-0.2.0 bokeh-2.4.3 contourpy-1.0.7 coverage-7.2.6 cycler-0.11.0 cython-0.29.35 decorator-5.1.1 distro-1.8.0 exceptiongroup-1.1.1 executing-1.2.0 find_libpython-0.3.0 fonttools-4.39.4 iniconfig-2.0.0 ipython-8.13.2 jedi-0.18.2 kiwisolver-1.4.4 matplotlib-3.7.1 matplotlib-inline-0.1.6 mpi4py-3.1.4 numpy-1.24.3 packaging-23.1 parso-0.8.3 pexpect-4.8.0 pickleshare-0.7.5 pillow-9.5.0 pip-23.1.2 pluggy-1.0.0 prompt-toolkit-3.0.38 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.15.1 pyparsing-3.0.9 pytest-7.3.1 pytest-cov-4.1.0 python-dateutil-2.8.2 scikit-build-0.17.5 setuptools-67.8.0 setuptools_scm-7.1.0 six-1.16.0 stack-data-0.6.2 tomli-2.0.1 tornado-6.3.2 traitlets-5.9.0 typing-extensions-4.6.2 wcwidth-0.2.6 wheel-0.40.0
[32;1m$ git submodule update --init --recursive --force --depth 1 -- external/nmodl[0;m
Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl'
Cloning into '/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/external/nmodl'...
From https://github.com/BlueBrain/nmodl
 * branch            74332868f9abcd3337ed142baae915748d1a7d91 -> FETCH_HEAD
Submodule path 'external/nmodl': checked out '74332868f9abcd3337ed142baae915748d1a7d91'
Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions'
Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2'
Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11'
Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen'
Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt'
Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json'
Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11'
Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog'
Cloning into '/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'...
Cloning into '/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/external/nmodl/ext/catch2'...
Cloning into '/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/external/nmodl/ext/cli11'...
Cloning into '/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/external/nmodl/ext/eigen'...
Cloning into '/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/external/nmodl/ext/fmt'...
Cloning into '/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/external/nmodl/ext/json'...
Cloning into '/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/external/nmodl/ext/pybind11'...
Cloning into '/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/external/nmodl/ext/spdlog'...
Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d'
From https://github.com/catchorg/Catch2
 * branch            62fd660583d3ae7a7886930b413c3c570e89786c -> FETCH_HEAD
Submodule path 'external/nmodl/ext/catch2': checked out '62fd660583d3ae7a7886930b413c3c570e89786c'
From https://github.com/CLIUtils/CLI11
 * branch            b9be5b9444772324459989177108a6a65b8b2769 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/cli11': checked out 'b9be5b9444772324459989177108a6a65b8b2769'
From https://gitlab.com/libeigen/eigen
 * branch            3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
From https://github.com/fmtlib/fmt
 * branch            a33701196adfad74917046096bf5a2aa0ab0bb50 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/fmt': checked out 'a33701196adfad74917046096bf5a2aa0ab0bb50'
From https://github.com/nlohmann/json
 * branch            4f8fba14066156b73f1189a2b8bd568bde5284c5 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/json': checked out '4f8fba14066156b73f1189a2b8bd568bde5284c5'
From https://github.com/pybind/pybind11
 * branch            914c06fb252b6cc3727d0eedab6736e88a3fcb01 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/pybind11': checked out '914c06fb252b6cc3727d0eedab6736e88a3fcb01'
From https://github.com/gabime/spdlog
 * branch            76fb40d95455f249bd70824ecfcae7a8f0930fa3 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/spdlog': checked out '76fb40d95455f249bd70824ecfcae7a8f0930fa3'
[32;1m$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt[0;m
Requirement already satisfied: Jinja2>=2.9.3 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 1)) (3.1.2)
Requirement already satisfied: PyYAML>=3.13 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 2)) (6.0)
Requirement already satisfied: pytest in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 3)) (7.3.1)
Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 4)) (4.1.0)
Collecting sympy (from -r external/nmodl/requirements.txt (line 5))
  Using cached sympy-1.12-py3-none-any.whl (5.7 MB)
Requirement already satisfied: numpy in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 6)) (1.24.3)
Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 7)) (0.3.0)
Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 1)) (2.1.2)
Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.0)
Requirement already satisfied: packaging in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (23.1)
Requirement already satisfied: pluggy<2.0,>=0.12 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.0.0)
Requirement already satisfied: exceptiongroup>=1.0.0rc8 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.1.1)
Requirement already satisfied: tomli>=1.0.0 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.1)
Requirement already satisfied: coverage[toml]>=5.2.1 in ./venv/lib/python3.10/site-packages (from pytest-cov->-r external/nmodl/requirements.txt (line 4)) (7.2.6)
Collecting mpmath>=0.19 (from sympy->-r external/nmodl/requirements.txt (line 5))
  Using cached mpmath-1.3.0-py3-none-any.whl (536 kB)
Installing collected packages: mpmath, sympy
Successfully installed mpmath-1.3.0 sympy-1.12
[32;1m$ source ./venv/bin/activate[0;m
[32;1m$ export PYTHON=${PWD}/venv/bin/python[0;m
[32;1m$ ${PYTHON} --version[0;m
Python 3.10.8
[32;1m$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"[0;m
[32;1m$ export CXX=${CXX:-g++}[0;m
[32;1m$ export CC=${CC:-gcc}[0;m
[32;1m$ brew install flex bison[0;m
Warning: flex 2.6.4_2 is already installed and up-to-date.
To reinstall 2.6.4_2, run:
  brew reinstall flex
Warning: bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
  brew reinstall bison
[32;1m$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"[0;m
[32;1m$ export INSTALL_DIR=$(pwd)/install[0;m
[32;1m$ echo $LANG[0;m

[32;1m$ echo $LC_ALL[0;m

[32;1m$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")[0;m
[32;1m$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'[0;m
[32;1m$ cmake_args=(-G Ninja)[0;m
[32;1m$ if [[ -n "${sanitizer}" ]]; then[0;m
[32;1m$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))[0;m
[32;1m$ fi[0;m
[32;1m$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})[0;m
[32;1m$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")[0;m
[32;1m$ mkdir build && cd build[0;m
[32;1m$ echo "Building with ${cmake_args[@]}"[0;m
Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/venv/bin/python
[32;1m$ cmake .. "${cmake_args[@]}"[0;m
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check
-- Sub-module : missing external/coding-conventions : running git submodule update --init
Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions'
Cloning into '/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/external/coding-conventions'...
Submodule path 'external/coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d'
-- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123
Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123'
Cloning into '/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/external/Random123'...
From https://github.com/BlueBrain/Random123
 * branch            b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD
Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1'
-- 3rd party project: using Random123 from "external/Random123"
-- Enabling sanitizers: address
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
-- Checking if /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/venv/bin/python is a working python
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2")
-- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6")
-- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include
-- Found MPI_C: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1")
-- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Detected OpenMPI 4.1.4
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Building CoreNEURON
-- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11
Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11'
Cloning into '/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/external/CLI11'...
From https://github.com/CLIUtils/CLI11
 * branch            291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD
Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2'
-- 3rd party project: using CLI11 from "external/CLI11"
-- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)")
-- Found Perl: /usr/bin/perl (found version "5.30.3")
-- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH)
-- Sub-project : using nmodl from from /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/external/nmodl
-- CHECKING FOR FLEX/BISON
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0")
--  Adding Flex include path as : /opt/homebrew/opt/flex/include/
-- NMODL_TEST_FORMATTING: OFF
-- NMODL_GIT_HOOKS: OFF
-- NMODL_GIT_COMMIT_HOOKS:
-- NMODL_GIT_PUSH_HOOKS: courtesy-msg
-- NMODL_STATIC_ANALYSIS: OFF
-- NMODL_TEST_STATIC_ANALYSIS: OFF
-- 3rd party project: using catch2 from "ext/catch2"
-- 3rd party project: using eigen from "ext/eigen"
-- 3rd party project: using fmt from "ext/fmt"
-- Module support is disabled.
-- Version: 9.1.0
-- Build type: Custom
-- CXX_STANDARD: 17
-- Required features: cxx_variadic_templates
-- 3rd party project: using json from "ext/json"
-- Using the single-header code from /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/external/nmodl/ext/json/single_include/
-- 3rd party project: using pybind11 from "ext/pybind11"
-- pybind11 v2.9.2
-- Found PythonInterp: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/venv/bin/python (found version "3.10.8")
-- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- 3rd party project: using spdlog from "ext/spdlog"
-- Build spdlog: 1.10.0
-- Build type: Custom
-- CHECKING FOR PYTHON
-- Found PythonInterp: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.8", minimum required is "3.8")
--
-- Configured NMODL 0.0 (7433286 2023-05-06 16:57:32 +0200)
--
-- You can now build NMODL using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------------+--------------------------------------------------------
--  Target             |   Description
-- --------------------+--------------------------------------------------------
-- test                | Run unit tests
-- install             | Will install NMODL to: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g
-- Build Type          | Custom
-- Legacy Units        | OFF
-- Python Bindings     | ON
-- Flex                | /opt/homebrew/opt/flex/bin/flex
-- Bison               | /opt/homebrew/opt/bison/bin/bison
-- Python              | /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/venv/bin/python
-- --------------+--------------------------------------------------------------
--  See documentation : https://github.com/BlueBrain/nmodl/
-- --------------+--------------------------------------------------------------
--
-- Boost found, unit tests enabled
--
-- CoreNEURON is enabled with following build configuration:
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g -std=c++17 -DCORENEURON_BUILD -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -DCORENEURON_USE_LEGACY_UNITS=0 -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Build Type          | SHARED
-- MPI                 | ON
--   DYNAMIC           | OFF
--   INC               | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include
-- OpenMP              | ON
-- Use legacy units    | OFF
-- NMODL PATH          | /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/bin/nmodl
-- NMODL FLAGS         |
-- GPU Support         | OFF
-- Auto Timeout        | ON
-- Wrap exp()          | OFF
-- SplayTree Queue     | ON
-- NetReceive Buffer   | ON
-- Caliper             | OFF
-- Likwid              | OFF
-- Unit Tests          | ON
-- Reporting           | OFF
-- --------------+--------------------------------------------------------------
--
Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got:
Generating link flags from path /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib
Generating link flags from path /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
-- Found Python module 'pytest' with version(s): 7.3.1
-- Found Python module 'pytest_cov' with version(s): 4.1.0
-- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata
Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata'
Cloning into '/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/test/rxd/testdata'...
From https://github.com/neuronsimulator/rxdtestdata
 * branch            be297655abf0f98be95a051576d43aad23cebbf0 -> FETCH_HEAD
Submodule path 'test/rxd/testdata': checked out 'be297655abf0f98be95a051576d43aad23cebbf0'
-- 3rd party project: using rxd/testdata from "test/rxd/testdata"
-- Found Python module 'mpi4py' with version(s): 3.1.4
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled
-- Found Python module 'mpi4py' with version(s): 3.1.4
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::inputpresyn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled
-- Could NOT find OpenSSL, try to set the path to OpenSSL root folder in the system variable OPENSSL_ROOT_DIR (missing: OPENSSL_CRYPTO_LIBRARY OPENSSL_INCLUDE_DIR)
-- Skipping tqperf test as OpenSSL package not found
--
-- Configured NEURON 9.0.0
--
-- You can now build NEURON using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------+--------------------------------------------------------------
--  Target       |   Description
-- --------------+--------------------------------------------------------------
-- install       | Will install NEURON to: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install
--               | Change the install location of NEURON using:
--               |   cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path>
-- docs          | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean
-- uninstall     | Removes files installed by make install (todo)
-- --------------+--------------------------------------------------------------
--  Build option | Status
-- --------------+--------------------------------------------------------------
-- C COMPILER    | /usr/bin/gcc
-- CXX COMPILER  | /usr/bin/g++
-- BUILD_TYPE    | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast)
-- COMPILE FLAGS | -O1 -g -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Shared        | ON
-- Default units | modern units (2019 nist constants)
-- MPI           | ON
--   DYNAMIC     | OFF
--   INC         | /opt/homebrew/Cellar/open-mpi/4.1.4_2/include
--   LIB         | /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib
-- Python        | ON
--   DYNAMIC     | OFF
--   MODULE      | ON
--  python3.10 (default)
--   EXE         | /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/venv/bin/python
--   INC         | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10
--   LIB         | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- Readline      | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd
-- Curses        | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd
-- RX3D          | OFF
-- Interviews    | OFF
-- CoreNEURON    | ON
--   PATH        | /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/coreneuron
--   LINK FLAGS  |  -lcorenrnmech  -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib
--   Legacy Units| OFF
-- Tests         | ON
-- --------------+--------------------------------------------------------------
--  See documentation : https://www.neuron.yale.edu/neuron/
-- --------------+--------------------------------------------------------------
--
-- Configuring done
-- Generating done
-- Build files have been written to: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build
[32;1m$ ccache -z[0;m
Statistics zeroed
[32;1m$ ccache -vs 2>/dev/null[0;m
Cache directory:    /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/ccache
Config file:        /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf
Stats updated:      Fri May 26 15:36:41 2023
Local storage:
  Cache size (GB):   2.05 / 5.00 (41.09%)
  Files:            19242
  Hits:                 0
  Misses:               0
  Reads:                0
  Writes:               0
[32;1m$ cmake --build . --parallel[0;m
[0/2] Re-checking globbed directories...
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[4/1645] Generating share/nrn/demo/d3init.hoc
[5/1645] Generating share/nrn/demo/dend3.ses
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[7/1645] Generating share/nrn/demo/dend3/control.hoc
[8/1645] Generating share/nrn/demo/dend3/syn3.hoc
[9/1645] Generating share/nrn/demo/dynchan.ses
[10/1645] Generating share/nrn/demo/dynclamp.hoc
[11/1645] Update hh.mod for CoreNEURON compatibility
[12/1645] Generating share/nrn/demo/dynclamp.ses
[13/1645] Generating share/nrn/demo/hh.hoc
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[20/1645] Generating share/nrn/demo/release/cabpump.mod
[21/1645] Generating share/nrn/demo/release/cachan1.mod
[22/1645] Generating share/nrn/demo/release/camchan.mod
[23/1645] Generating share/nrn/demo/release/khhchan.mod
[24/1645] Generating share/nrn/demo/release/invlfire.mod
[25/1645] Generating share/nrn/demo/release.ses
[26/1645] Generating share/nrn/demo/release/capump.mod
[27/1645] Generating share/nrn/demo/release/mcna.mod
[28/1645] Generating share/nrn/demo/release/nachan.mod
[29/1645] Generating share/nrn/demo/release/release.mod
[30/1645] Generating share/nrn/demo/release/nacaex.mod
[31/1645] Generating share/nrn/demo/sync/cell.hoc
[32/1645] Generating share/nrn/demo/sync/demosync.hoc
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[35/1645] Generating share/nrn/demo/sync/init.hoc
[36/1645] Generating share/nrn/demo/sync/spkplot.hoc
[37/1645] Generating share/nrn/demo/singhhchan.hoc
[38/1645] Generating share/nrn/demo/sync/synchronize.hoc
[39/1645] Generating share/nrn/demo/testca.hoc
[40/1645] Generating share/nrn/demo/sync/start.ses
[41/1645] Generating share/nrn/lib/auditscripts/gettarname
[42/1645] Generating share/nrn/lib/auditscripts/hocaudit.sh
[43/1645] Generating share/nrn/lib/auditscripts/notes
[44/1645] Generating share/nrn/lib/auditscripts/retrieve.sh
[45/1645] Generating share/nrn/lib/auditscripts/saveaudit
[46/1645] Generating share/nrn/lib/cleanup
[47/1645] Generating share/nrn/lib/hoc/atoltool.hoc
[48/1645] Generating share/nrn/lib/hoc/attshape.hoc
[49/1645] Generating share/nrn/lib/helpdict
[50/1645] Generating share/nrn/lib/hoc/celbild.hoc
[51/1645] Generating share/nrn/lib/hoc/binfo.hoc
[52/1645] Generating share/nrn/lib/hoc/celbild/celmang.hoc
[53/1645] Generating share/nrn/lib/hoc/celbild/celbild1.hoc
[54/1645] Generating share/nrn/lib/hoc/celbild/celgeom.hoc
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[56/1645] Generating share/nrn/lib/hoc/celbild/celtopol.hoc
[57/1645] Generating share/nrn/lib/hoc/celbild/celmemb.hoc
[58/1645] Generating share/nrn/lib/hoc/celbild/psubset.hoc
[59/1645] Generating share/nrn/lib/hoc/chanbild/const.hoc
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[72/1645] Generating share/nrn/lib/hoc/chanbild/properties.hoc
[73/1645] Generating share/nrn/lib/hoc/chanbild/table.hoc
[74/1645] Generating share/nrn/lib/hoc/corenrn.hoc
[75/1645] Generating share/nrn/lib/hoc/electrod.hoc
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[81/1645] Generating share/nrn/lib/hoc/import3d/import3d_gui.hoc
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[86/1645] Generating share/nrn/lib/hoc/import3d/read_nlcda3.hoc
[87/1645] Generating share/nrn/lib/hoc/import3d/read_nlcda.hoc
[88/1645] Generating share/nrn/lib/hoc/import3d/read_nts.hoc
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[90/1645] Generating share/nrn/lib/hoc/lincir.hoc
[91/1645] Generating share/nrn/lib/hoc/import3d/read_swc.hoc
[92/1645] Generating share/nrn/lib/hoc/inserter.hoc
[93/1645] Generating share/nrn/lib/hoc/lincir/elmbase.hoc
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[104/1645] Generating share/nrn/lib/hoc/mulfit.hoc
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[115/1645] Generating share/nrn/lib/hoc/mulfit/fitparm.hoc
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[126/1645] Generating share/nrn/lib/hoc/mview/mviewxml.hoc
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[170/1645] Generating share/nrn/lib/nrn.defaults.in
[171/1645] Generating share/nrn/lib/python/neuron/__init__.py
[172/1645] Generating share/nrn/lib/python/neuron/config.py
[173/1645] Generating share/nrn/lib/python/neuron/coreneuron.py
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[175/1645] Generating share/nrn/lib/python/neuron/expect_hocerr.py
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[177/1645] Generating share/nrn/lib/python/neuron/crxd/__init__.py
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[181/1645] Generating share/nrn/lib/python/neuron/gui2/config.py
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[189/1645] Generating share/nrn/lib/python/neuron/neuroml/morphml.py
[190/1645] Generating share/nrn/lib/python/neuron/neuroml/metadata.py
[191/1645] Generating share/nrn/lib/python/neuron/nonvint_block_supervisor.py
[192/1645] Generating share/nrn/lib/python/neuron/neuroml/__init__.py
[193/1645] Generating share/nrn/lib/python/neuron/hclass3.py
[194/1645] Generating share/nrn/lib/python/neuron/neuroml/xml2nrn.py
[195/1645] Generating share/nrn/lib/python/neuron/rxd/__init__.py
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[216/1645] Generating share/nrn/lib/python/neuron/rxd/gui.py
[217/1645] Generating share/nrn/lib/python/neuron/rxd/initializer.py
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[219/1645] Generating share/nrn/lib/python/neuron/rxd/options.py
[220/1645] Generating share/nrn/lib/python/neuron/rxd/multiCompartmentReaction.py
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[222/1645] Generating share/nrn/lib/python/neuron/rxd/reaction.py
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[235/1645] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/include_flux3d.py
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[238/1645] Generating share/nrn/lib/python/neuron/rxdtests/tests/3d/pure_diffusion_3d.py
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[262/1645] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_cvode.py
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[264/1645] Generating share/nrn/lib/python/neuron/rxdtests/tests/hybrid/bistable_hybrid_cvode_change_nthread.py
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[270/1645] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_reactions_del.py
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[272/1645] Generating share/nrn/lib/python/neuron/rxdtests/tests/pure_diffusion_cvode.py
[273/1645] Generating share/nrn/lib/python/neuron/rxdtests/tests/multicompartment_mebrane_mismatch.py
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[466/1645] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/symbol.cpp.o
[467/1645] Generating ../oc/hocusr.h
[468/1645] Generating coreneuron_standalone/test_nrn_corenrn_standalone/test/coreneuron/test_psolve.py
[469/1645] Generating nrniv_script.py/do_nothing.py
[470/1645] Generating nrniv_script.py_error/assert_false.py
[471/1645] Generating nrniv_two_scripts.py/do_nothing.py
[472/1645] Generating nrniv_two_scripts.py_error_check_code/assert_false.py
[473/1645] Generating nrniv_two_scripts.py_error_check_code/do_nothing.py
[474/1645] Generating nrniv_two_scripts.py_error_check_output/assert_false.py
[475/1645] Generating nrniv_two_scripts.py_error_check_output/do_nothing.py
[476/1645] Generating nrniv_python_script.py/do_nothing.py
[477/1645] Generating nrniv_python_script.py_error/assert_false.py
[478/1645] Generating nrniv_python_script.py_twice/assert_false.py
[479/1645] Generating nrniv_python_script.py_twice/do_nothing.py
[480/1645] Linking CXX static library lib/libcoreneuron-core.a
[481/1645] Generating nrniv_python_script.py_args/assert_last_args_are_foo_and_bar.py
[482/1645] Generating nrniv_py3.10_python_check_sys_path/check_sys_attr.py
[483/1645] Generating nrniv_py3.10_python_check_sys_path/dump_sys_attr.py
[484/1645] Generating nrniv_py3.10_nrnpython_check_sys_path/check_sys_attr.hoc
[485/1645] Building CXX object src/nrnpython/CMakeFiles/rxdmath.dir/rxdmath.cpp.o
[486/1645] Generating nrniv_py3.10_nrnpython_check_sys_path/dump_sys_attr.py
[487/1645] Generating nrniv_py3.10_python_check_sys_prefix/check_sys_attr.py
[488/1645] Generating nrniv_py3.10_python_check_sys_prefix/dump_sys_attr.py
[489/1645] Generating nrniv_py3.10_nrnpython_check_sys_prefix/check_sys_attr.hoc
[490/1645] Generating nrniv_py3.10_nrnpython_check_sys_prefix/dump_sys_attr.py
[491/1645] Generating nrniv_py3.10_python_check_sys_exec_prefix/check_sys_attr.py
[492/1645] Generating nrniv_py3.10_python_check_sys_exec_prefix/dump_sys_attr.py
[493/1645] Generating nrniv_py3.10_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc
[494/1645] Generating nrniv_py3.10_nrnpython_check_sys_exec_prefix/dump_sys_attr.py
[495/1645] Generating nrniv_py3.10_python_check_sys_base_prefix/dump_sys_attr.py
[496/1645] Generating nrniv_py3.10_python_check_sys_base_prefix/check_sys_attr.py
[497/1645] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o
[498/1645] Generating nrniv_py3.10_nrnpython_check_sys_base_prefix/check_sys_attr.hoc
[499/1645] Generating nrniv_py3.10_nrnpython_check_sys_base_prefix/dump_sys_attr.py
[500/1645] Generating nrniv_py3.10_python_check_sys_base_exec_prefix/check_sys_attr.py
[501/1645] Generating nrniv_py3.10_python_check_sys_base_exec_prefix/dump_sys_attr.py
[502/1645] Generating nrniv_py3.10_nrnpython_check_sys_base_exec_prefix/dump_sys_attr.py
[503/1645] Linking CXX shared library lib/librxdmath.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
[504/1645] Generating nrniv_py3.10_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc
[505/1645] Generating nrniv_py3.10_python_check_sys_stderr.encoding/check_sys_attr.py
[506/1645] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o
[507/1645] Generating nrniv_py3.10_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc
[508/1645] Generating nrniv_py3.10_nrnpython_check_sys_stderr.encoding/dump_sys_attr.py
[509/1645] Generating nrniv_py3.10_python_check_sys_stderr.encoding/dump_sys_attr.py
[510/1645] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc
[511/1645] Generating nrniv_py3.10_python_check_sys_stdin.encoding/dump_sys_attr.py
[512/1645] Generating nrniv_py3.10_python_check_sys_stdin.encoding/check_sys_attr.py
[513/1645] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py
[514/1645] Generating nrniv_py3.10_python_check_sys_stdout.encoding/dump_sys_attr.py
[515/1645] Generating nrniv_py3.10_python_check_sys_stdout.encoding/check_sys_attr.py
[516/1645] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc
[517/1645] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py
[518/1645] Generating nrniv_pydef_python_check_sys_path/check_sys_attr.py
[519/1645] Generating nrniv_pydef_python_check_sys_path/dump_sys_attr.py
[520/1645] Generating nrniv_pydef_nrnpython_check_sys_path/check_sys_attr.hoc
[521/1645] Generating nrniv_pydef_nrnpython_check_sys_path/dump_sys_attr.py
[522/1645] Generating nrniv_pydef_python_check_sys_prefix/check_sys_attr.py
[523/1645] Generating nrniv_pydef_python_check_sys_prefix/dump_sys_attr.py
[524/1645] Generating nrniv_pydef_nrnpython_check_sys_prefix/check_sys_attr.hoc
[525/1645] Generating nrniv_pydef_nrnpython_check_sys_prefix/dump_sys_attr.py
[526/1645] Generating nrniv_pydef_python_check_sys_exec_prefix/dump_sys_attr.py
[527/1645] Generating nrniv_pydef_python_check_sys_exec_prefix/check_sys_attr.py
[528/1645] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc
[529/1645] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/dump_sys_attr.py
[530/1645] Generating nrniv_pydef_python_check_sys_base_prefix/check_sys_attr.py
[531/1645] Generating nrniv_pydef_python_check_sys_base_prefix/dump_sys_attr.py
[532/1645] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/check_sys_attr.hoc
[533/1645] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/dump_sys_attr.py
[534/1645] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc
[535/1645] Generating nrniv_pydef_python_check_sys_base_exec_prefix/check_sys_attr.py
[536/1645] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/dump_sys_attr.py
[537/1645] Generating nrniv_pydef_python_check_sys_base_exec_prefix/dump_sys_attr.py
[538/1645] Generating nrniv_pydef_python_check_sys_stderr.encoding/check_sys_attr.py
[539/1645] Generating nrniv_pydef_python_check_sys_stderr.encoding/dump_sys_attr.py
[540/1645] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc
[541/1645] Generating nrniv_pydef_python_check_sys_stdin.encoding/check_sys_attr.py
[542/1645] Generating nrniv_pydef_python_check_sys_stdin.encoding/dump_sys_attr.py
[543/1645] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/dump_sys_attr.py
[544/1645] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc
[545/1645] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py
[546/1645] Generating nrniv_pydef_python_check_sys_stdout.encoding/check_sys_attr.py
[547/1645] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc
[548/1645] Generating nrniv_pydef_python_check_sys_stdout.encoding/dump_sys_attr.py
[549/1645] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py
[550/1645] Generating ../../compare_test_results.py
[551/1645] Generating ../tests/testcorenrn/reference/out_bbcore.spk
[552/1645] Generating ../tests/ringtest/reference_data/spk1.100ms.std.ref
[553/1645] Generating ../tests/testcorenrn/reference/out_conc.spk
[554/1645] Generating ../tests/testcorenrn/reference/out_deriv.spk
[555/1645] Generating ../tests/testcorenrn/reference/out_gf.spk
[556/1645] Generating ../tests/testcorenrn/reference/out_kin.spk
[557/1645] Generating ../tests/testcorenrn/reference/out_vecevent.spk
[558/1645] Generating ../tests/testcorenrn/reference/out_netstimdirect.spk
[559/1645] Generating ../tests/testcorenrn/reference/out_watch.spk
[560/1645] Generating ../tests/testcorenrn/reference/out_patstim.spk
[561/1645] Generating ../tests/testcorenrn/reference/out_vecplay.spk
[562/1645] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o
[563/1645] Building CXX object external/nmodl/src/pybind/CMakeFiles/pyembed.dir/pyembed.cpp.o
[564/1645] Linking CXX executable bin/nocmodl
[565/1645] Building CXX object external/nmodl/src/pybind/CMakeFiles/pywrapper.dir/wrapper.cpp.o
[566/1645] Linking CXX static library lib/libpywrapper.a
[567/1645] Generating ../nrnoc/exp2syn.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp
Thread Safe
[568/1645] Generating ../nrnoc/feature.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/feature.cpp
Notice: VERBATIM blocks are not thread safe
[569/1645] Generating ../nrnoc/intfire1.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/intfire1.cpp
Thread Safe
[570/1645] Generating ../nrnoc/expsyn.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/expsyn.cpp
Thread Safe
[571/1645] Generating ../nrnoc/netstim.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/netstim.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[572/1645] Generating ../nrnoc/intfire4.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/intfire4.cpp
Thread Safe
[573/1645] Generating ../nrnoc/apcount.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/apcount.cpp
Thread Safe
[574/1645] Generating ../nrnoc/hh.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/hh.cpp
Thread Safe
    [575/1645] Generating ../nrnoc/intfire2.cpp

Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/intfire2.cpp
Thread Safe
[576/1645] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/logger.cpp.o
[577/1645] Generating ../nrnoc/ppmark.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/ppmark.cpp
Thread Safe
[578/1645] Generating ../nrnoc/oclmp.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/oclmp.cpp
Thread Safe
[579/1645] Generating ../nrnoc/passive.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/passive.cpp
Thread Safe
[580/1645] Generating ../nrnoc/stim.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/stim.cpp
Thread Safe
[581/1645] Generating ../nrnoc/pattern.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/pattern.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[582/1645] Generating ../nrnoc/syn.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/syn.cpp
Thread Safe
[583/1645] Generating ../nrnoc/svclmp.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/svclmp.cpp
Thread Safe
[584/1645] Linking CXX static library lib/libutil.a
[585/1645] Generating ../nrnoc/vclmp.cpp
Translating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/src/nrnoc/vclmp.cpp
Notice: VERBATIM blocks are not thread safe
Notice: LINEAR is not thread safe.
[586/1645] -- NMODL : GENERATING UNIT LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched
[587/1645] -- NMODL : GENERATING NMODL LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/nmodl.ll:506: warning, -s option given but default rule can be matched
[588/1645] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! --
[589/1645] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/diffeq.ll:103: warning, -s option given but default rule can be matched
[590/1645] -- NMODL : GENERATING C(11) LEXER WITH FLEX! --
[591/1645] Linking CXX static library lib/libpyembed.a
[592/1645] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/cbwidget.cpp.o
[593/1645] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/bndedval.cpp.o
[594/1645] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/axis.cpp.o
[595/1645] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/apwindow.cpp.o
[596/1645] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/epsprint.cpp.o
[597/1645] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/checkpnt.cpp.o
[598/1645] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/gifimage.cpp.o
[599/1645] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/fourier.cpp.o
[600/1645] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_transform_visitor.cpp.o
[601/1645] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_info.cpp.o
[602/1645] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/modtoken.cpp.o
[603/1645] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/token_mapping.cpp.o
[604/1645] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_utils.cpp.o
[605/1645] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/nmodl_utils.cpp.o
[606/1645] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/verbatim_lexer.cpp.o
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[608/1645] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/diffeq_base_lexer.cpp.o
[609/1645] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_compatibility_visitor.cpp.o
[610/1645] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_driver.cpp.o
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[613/1645] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/c11_base_lexer.cpp.o
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[619/1645] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq/diffeq_parser.cpp.o
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[623/1645] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/nmodl_driver.cpp.o
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[638/1645] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/kinetic_block_visitor.cpp.o
[639/1645] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/loop_unroll_visitor.cpp.o
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[641/1645] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/localize_visitor.cpp.o
[642/1645] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/neuron_solve_visitor.cpp.o
[643/1645] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/ast/ast.cpp.o
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[645/1645] Linking CXX static library lib/liblexer.a
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[647/1645] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/semantic_analysis_visitor.cpp.o
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[1040/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagkftab.mod
[1041/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/capmp.mod
[1042/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/expsynspine.mod
[1043/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fh.mod
[1044/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fit1.mod
[1045/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/gap.mod
[1046/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hh1.mod
[1047/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hhvect.mod
[1048/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/inatest.mod
[1049/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/ionleak.mod
[1050/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacum.mod
[1051/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacur.mod
[1052/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nadifl.mod
[1053/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nonlin.mod
[1054/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/obj_ex.mod
[1055/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/order.mod
[1056/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/passiv.mod
[1057/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/rchan.mod
[1058/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/standard.inc
[1059/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/stim1.mod
[1060/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/str.mod
[1061/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/syn1.mod
[1062/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/synpre.mod
[1063/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/trivial.mod
[1064/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstdarray.mod
[1065/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstextrn.mod
[1066/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt1.mod
[1067/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt2.mod
[1068/1645] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:135: UserWarning: "/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:creating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:creating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:creating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:creating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:creating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:creating /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:building 'neuron.hoc' extension
INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17
INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../
ld: warning: -undefined dynamic_lookup may not work with chained fixups
INFO:root:running build_scripts
INFO:root:creating build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10
INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755
INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755
INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755
INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755
[1069/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstvec.mod
[1070/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vclmp1.mod
[1071/1645] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vlag.mod
[1072/1645] Generating nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f/atest.mod
[1073/1645] Building special[-core] for test group coverage_tests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51
cfiles =
Mod files: "./ppxsrc.mod"

MODOBJS= ./ppxsrc.o
 -> NMODL .././ppxsrc.mod
 -> Compiling mod_func.cpp
Translating ppxsrc.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
Thread Safe
 -> Compiling ppxsrc.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1074/1645] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json
[1075/1645] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py
[1076/1645] Generating nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/follower.mod
[1077/1645] Generating nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/gap.mod
[1078/1645] Generating nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/unitstest.mod
[1079/1645] Generating nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/version_macros.mod
[1080/1645] Building special[-core] for test group hoctests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f
cfiles =
Mod files: "./atest.mod"

MODOBJS= ./atest.o
 -> NMODL .././atest.mod
 -> Compiling mod_func.cpp
Translating atest.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/0a9c588b2ccd04e5c212673c38bcea9f5e31a93a1f22ff6d0b36f0b0baf5928f/arm64/atest.cpp
Thread Safe
 -> Compiling atest.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1081/1645] Generating hoctests/test_loadbal_hoc/expect_err.hoc
[1082/1645] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc
[1083/1645] Generating hoctests/perf1_hoc/expect_err.hoc
[1084/1645] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc
[1085/1645] Generating hoctests/test1_hoc/expect_err.hoc
[1086/1645] Generating hoctests/test1_hoc/vardimtests/test1.hoc
[1087/1645] Generating hoctests/test2_hoc/expect_err.hoc
[1088/1645] Generating hoctests/test2_hoc/vardimtests/test2.hoc
[1089/1645] Generating hoctests/test3_hoc/expect_err.hoc
[1090/1645] Generating hoctests/test3_hoc/vardimtests/test3.hoc
[1091/1645] Generating hoctests/test4_hoc/expect_err.hoc
[1092/1645] Generating hoctests/test4_hoc/vardimtests/test4.hoc
[1093/1645] Generating hoctests/test5_hoc/expect_err.hoc
[1094/1645] Generating hoctests/test5_hoc/vardimtests/test5.hoc
[1095/1645] Generating hoctests/test6_hoc/expect_err.hoc
[1096/1645] Generating hoctests/test6_hoc/vardimtests/test6.hoc
[1097/1645] Generating hoctests/test7_hoc/expect_err.hoc
[1098/1645] Generating hoctests/test7_hoc/vardimtests/test7.hoc
[1099/1645] Generating hoctests/test8_hoc/expect_err.hoc
[1100/1645] Generating hoctests/test8_hoc/vardimtests/test8.hoc
[1101/1645] Generating hoctests/test9_hoc/expect_err.hoc
[1102/1645] Generating hoctests/test9_hoc/vardimtests/test9.hoc
[1103/1645] Generating hoctests/test_kschan_py/tests/test_kschan.py
[1104/1645] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json
[1105/1645] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py
[1106/1645] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py
[1107/1645] Generating hoctests/test_shape_py/tests/test_shape.py
[1108/1645] Generating hoctests/test1_py/vardimtests/test1.py
[1109/1645] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pynode_0.cpp.o
[1110/1645] Generating hoctests/test9_py/vardimtests/test9.py
[1111/1645] Generating hoctests/test2_py/vardimtests/test2.py
[1112/1645] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod
[1113/1645] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod
[1114/1645] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod
[1115/1645] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod
[1116/1645] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod
[1117/1645] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod
[1118/1645] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod
[1119/1645] Building special[-core] for test group parallel
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./unitstest.mod" "./version_macros.mod"

MODOBJS= ./follower.o ./gap.o ./unitstest.o ./version_macros.o
 -> Compiling mod_func.cpp
 -> NMODL .././unitstest.mod
 -> NMODL .././gap.mod
 -> NMODL .././follower.mod
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/arm64/unitstest.cpp
Thread Safe
Translating follower.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/arm64/follower.cpp
Thread Safe
Translating gap.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/arm64/gap.cpp
Thread Safe
 -> NMODL .././version_macros.mod
 -> Compiling follower.cpp
 -> Compiling unitstest.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/a83e0cea8de94437d1b91dc48a064e885a010626fd9481d25031fd658902f7e9/arm64/version_macros.cpp
Thread Safe
 -> Compiling gap.cpp
 -> Compiling version_macros.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1120/1645] Generating parallel/partrans/test/pynrn/test_partrans.py
[1121/1645] Generating parallel/subworld/test/parallel_tests/test_subworld.py
[1122/1645] Generating parallel/netpar/test/pynrn/test_hoc_po.py
[1123/1645] Generating parallel/netpar/test/pynrn/test_netpar.py
[1124/1645] Generating parallel/bas/test/parallel_tests/test_bas.py
[1125/1645] Generating parallel/nrntest_fast/test/pynrn/run_pytest.py
[1126/1645] Generating parallel/nrntest_fast/test/pynrn/test_nrntest_fast.json
[1127/1645] Generating parallel/nrntest_fast/test/pynrn/test_nrntest_fast.py
[1128/1645] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/benchmarks/threads/test_multicore.cpp.o
[1129/1645] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "mcna.mod" "nacaex.mod" "nachan.mod" "release.mod"

MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./mcna.o ./nacaex.o ./nachan.o ./release.o
 -> Compiling mod_func.cpp
 -> NMODL ../cabpump.mod
 -> NMODL ../cachan1.mod
 -> NMODL ../camchan.mod
Translating camchan.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
Thread Safe
Translating cachan1.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Thread Safe
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
 -> NMODL ../capump.mod
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL ../invlfire.mod
 -> NMODL ../khhchan.mod
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
Translating capump.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
Thread Safe
Thread Safe
Translating khhchan.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
Thread Safe
 -> NMODL ../mcna.mod
 -> NMODL ../nacaex.mod
 -> NMODL ../nachan.mod
Translating nachan.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
Translating mcna.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/mcna.cpp
Translating nacaex.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
Thread Safe
Thread Safe
Thread Safe
 -> NMODL ../release.mod
 -> Compiling cabpump.cpp
 -> Compiling cachan1.cpp
Translating release.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
Thread Safe
 -> Compiling camchan.cpp
 -> Compiling capump.cpp
 -> Compiling invlfire.cpp
 -> Compiling khhchan.cpp
 -> Compiling mcna.cpp
 -> Compiling nacaex.cpp
 -> Compiling nachan.cpp
 -> Compiling release.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1130/1645] Building special[-core] for test group nmodl_tests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5
cfiles =
Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod"

MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o
 -> Compiling mod_func.cpp
 -> NMODL .././cadif.mod
 -> NMODL .././disc.mod
 -> NMODL .././fornetcon.mod
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp
Thread Safe
Translating cadif.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp
Thread Safe
Translating disc.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp
 -> NMODL .././hhwatch.mod
Notice: DISCRETE is not thread safe.
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././k3st.mod
 -> NMODL .././table.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp
Thread Safe
Translating k3st.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp
NEURON's CVode method ignores conservation
Thread Safe
 -> NMODL .././variabletypes.mod
 -> Compiling cadif.cpp
Translating table.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp
Thread Safe
 -> Compiling disc.cpp
Translating variabletypes.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp
Thread Safe
 -> Compiling fornetcon.cpp
 -> Compiling hhwatch.cpp
 -> Compiling k3st.cpp
 -> Compiling table.cpp
 -> Compiling variabletypes.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1131/1645] Generating nmodl_tests/test_table/test/nmodl/test_table.py
[1132/1645] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py
[1133/1645] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py
[1134/1645] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py
[1135/1645] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py
[1136/1645] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py
[1137/1645] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py
[1138/1645] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py
[1139/1645] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pynode_1.cpp.o
[1140/1645] Building CXX object external/nmodl/src/pybind/CMakeFiles/_nmodl.dir/pyvisitor.cpp.o
[1141/1645] Linking CXX shared module lib/nmodl/_nmodl.cpython-310-darwin.so
ld: warning: -undefined dynamic_lookup may not work with chained fixups
[1142/1645] Building special[-core] for test group example_nmodl
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2
cfiles =
Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod"

MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o
 -> NMODL .././cachan.mod
 -> NMODL .././argpass.mod
 -> NMODL .././cabpump.mod
 -> Compiling mod_func.cpp
Translating argpass.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp
Notice: VERBATIM blocks are not thread safe
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL .././cacum.mod
Translating cachan.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp
 -> NMODL .././cacur.mod
Thread Safe
 -> NMODL .././cadif.mod
Translating cacur.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp
Translating cacum.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp
Thread Safe
Thread Safe
 -> NMODL .././cadifusl.mod
 -> NMODL .././cagk.mod
Translating cadif.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp
Thread Safe
 -> NMODL .././cagkftab.mod
Translating cagk.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp
Thread Safe
Translating cadifusl.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL .././capmp.mod
 -> NMODL .././expsynspine.mod
Translating cagkftab.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp
Thread Safe
 -> NMODL .././fh.mod
Translating capmp.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp
NEURON's CVode method ignores conservation
Translating expsynspine.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp
Thread Safe
Notice: LINEAR is not thread safe.
 -> NMODL .././fit1.mod
 -> NMODL .././gap.mod
Translating fh.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp
INCLUDEing standard.inc
Notice: Assignment to the GLOBAL variable, "inf", is not thread safe
Notice: Assignment to the GLOBAL variable, "tau", is not thread safe
 -> NMODL .././hh1.mod
Translating fit1.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp
Translating gap.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././hhvect.mod
 -> NMODL .././inatest.mod
Translating hh1.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp
Notice: This mechanism cannot be used with CVODE
Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe
Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "minf", is not thread safe
Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
 -> NMODL .././ionleak.mod
Translating inatest.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp
Translating hhvect.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp
Thread Safe
Notice: This mechanism cannot be used with CVODE
Thread Safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
 -> NMODL .././nacum.mod
 -> NMODL .././nacur.mod
Translating ionleak.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp
Thread Safe
 -> NMODL .././nadifl.mod
Translating nacur.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp
Thread Safe
Translating nacum.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp
Thread Safe
 -> NMODL .././nonlin.mod
 -> NMODL .././obj_ex.mod
Translating nadifl.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp
Thread Safe
Translating obj_ex.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp
 -> NMODL .././order.mod
Thread Safe
Translating nonlin.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp
Notice: NONLINEAR is not thread safe.
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> NMODL .././passiv.mod
 -> NMODL .././rchan.mod
Translating order.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp
Thread Safe
Translating passiv.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp
Thread Safe
Translating rchan.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp
Notice: normrand is not thread safe
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././stim1.mod
 -> NMODL .././str.mod
 -> NMODL .././syn1.mod
Translating stim1.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp
Thread Safe
Translating str.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp
Translating syn1.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp
Notice: VERBATIM blocks are not thread safe
Thread Safe
 -> NMODL .././synpre.mod
 -> NMODL .././trivial.mod
 -> NMODL .././tstdarray.mod
 -> NMODL .././tstextrn.mod
Translating tstdarray.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp
Thread Safe
Translating synpre.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp
Notice: Use of POINTER is not thread safe.
Translating trivial.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././tstpnt1.mod
Translating tstextrn.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp
Notice: Use of EXTERNAL is not thread safe.
 -> NMODL .././tstpnt2.mod
 -> NMODL .././tstvec.mod
 -> NMODL .././vclmp1.mod
Translating tstpnt1.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp
Notice: Use of POINTER is not thread safe.
Translating tstpnt2.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp
Notice: Use of POINTER is not thread safe.
Translating tstvec.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././vlag.mod
Translating vclmp1.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
Notice: LINEAR is not thread safe.
 -> Compiling argpass.cpp
 -> Compiling cabpump.cpp
 -> Compiling cachan.cpp
Translating vlag.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp
Thread Safe
 -> Compiling cacum.cpp
 -> Compiling cacur.cpp
 -> Compiling cadif.cpp
 -> Compiling cadifusl.cpp
 -> Compiling cagk.cpp
 -> Compiling cagkftab.cpp
 -> Compiling capmp.cpp
 -> Compiling expsynspine.cpp
 -> Compiling fh.cpp
 -> Compiling fit1.cpp
 -> Compiling gap.cpp
 -> Compiling hh1.cpp
 -> Compiling hhvect.cpp
 -> Compiling inatest.cpp
 -> Compiling ionleak.cpp
 -> Compiling nacum.cpp
 -> Compiling nacur.cpp
 -> Compiling nadifl.cpp
 -> Compiling nonlin.cpp
 -> Compiling obj_ex.cpp
 -> Compiling order.cpp
 -> Compiling passiv.cpp
 -> Compiling rchan.cpp
 -> Compiling stim1.cpp
 -> Compiling str.cpp
 -> Compiling syn1.cpp
 -> Compiling synpre.cpp
 -> Compiling trivial.cpp
 -> Compiling tstdarray.cpp
 -> Compiling tstextrn.cpp
 -> Compiling tstpnt1.cpp
 -> Compiling tstpnt2.cpp
 -> Compiling tstvec.cpp
 -> Compiling vclmp1.cpp
 -> Compiling vlag.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1143/1645] Generating example_nmodl/cachan_hoc/cachan.hoc
[1144/1645] Generating example_nmodl/cabpump_hoc/cabpump.hoc
[1145/1645] Generating example_nmodl/cadif_hoc/cadif.hoc
[1146/1645] Generating example_nmodl/cadifusl_hoc/cadifusl.hoc
[1147/1645] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc
[1148/1645] Generating example_nmodl/cadif_hoc/cadif.ses
[1149/1645] Generating example_nmodl/cadifusl1_hoc/cadifusl1.hoc
[1150/1645] Generating example_nmodl/cagk_hoc/cagk.hoc
[1151/1645] Generating example_nmodl/cv_hoc/cv.hoc
[1152/1645] Generating example_nmodl/cadifusl2_hoc/cadifusl2.hoc
[1153/1645] Generating example_nmodl/capmp_hoc/capmp.hoc
[1154/1645] Generating example_nmodl/fh_hoc/fh.hoc
[1155/1645] Generating example_nmodl/fit1_hoc/fit1.hoc
[1156/1645] Generating example_nmodl/nacum_hoc/nacum.hoc
[1157/1645] Generating example_nmodl/hhvect_hoc/hhvect.hoc
[1158/1645] Generating example_nmodl/gap_hoc/gap.hoc
[1159/1645] Generating example_nmodl/hh1_hoc/hh1.hoc
[1160/1645] Generating example_nmodl/nadifl1_hoc/nadifl1.hoc
[1161/1645] Generating example_nmodl/nadifl1_hoc/nadifl1.ses
[1162/1645] Generating example_nmodl/nadifl2_hoc/nadifl2.hoc
[1163/1645] Generating example_nmodl/nadifl3_hoc/nadifl3.ses
[1164/1645] Generating example_nmodl/nadifl2_hoc/nadifl2.ses
[1165/1645] Generating example_nmodl/nadifl3_hoc/nadifl3.hoc
[1166/1645] Generating example_nmodl/nadifl4_hoc/nadifl4.hoc
[1167/1645] Generating example_nmodl/order_hoc/order.hoc
[1168/1645] Generating example_nmodl/nadifl4_hoc/nadifl4.ses
[1169/1645] Generating example_nmodl/obj_ex_hoc/obj_ex.hoc
[1170/1645] Generating example_nmodl/stim1_hoc/stim1.hoc
[1171/1645] Generating example_nmodl/passiv_hoc/passiv.hoc
[1172/1645] Generating example_nmodl/syn1_hoc/syn1.hoc
[1173/1645] Generating example_nmodl/synpre_hoc/synpre.hoc
[1174/1645] Generating example_nmodl/tstextrn_hoc/tstextrn.hoc
[1175/1645] Generating example_nmodl/tstpnt1_hoc/tstpnt1.hoc
[1176/1645] Generating example_nmodl/tstpnt2_hoc/tstpnt2.hoc
[1177/1645] Generating example_nmodl/tstvec_hoc/tstvec.hoc
[1178/1645] Generating example_nmodl/cagkftab_py/cagkftab.py
[1179/1645] Generating example_nmodl/expsynspine_py/expsynspine.ses
[1180/1645] Generating example_nmodl/expsynspine_py/expsynspine.py
[1181/1645] Generating example_nmodl/tstpnt2_py/tstpnt2.py
[1182/1645] Generating example_nmodl/tstpnt1_py/tstpnt1.py
[1183/1645] Generating example_nmodl/nonlin_py/nonlin.py
[1184/1645] Generating example_nmodl/vlag_py/vlag.py
[1185/1645] Linking CXX executable bin/nmodl
[1186/1645] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/axial_pp.mod
[1187/1645] Generating nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/gap.mod
[1188/1645] Generating nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/version_macros.mod
[1189/1645] Generating nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/follower.mod
[1190/1645] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/axial.mod
[1191/1645] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/axial.inc
[1192/1645] Generating nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/unitstest.mod
[1193/1645] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/bacur.mod
[1194/1645] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/banocur.mod
[1195/1645] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/netmove.mod
[1196/1645] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/fornetcon.mod
[1197/1645] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/invlfire.mod
[1198/1645] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/natrans.mod
[1199/1645] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/unitstest.mod
[1200/1645] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/sample.mod
[1201/1645] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/version_macros.mod
[1202/1645] Generating nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/watchrange.mod
[1203/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod
[1204/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod
[1205/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod
[1206/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod
[1207/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod
[1208/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod
[1209/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod
[1210/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod
[1211/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod
[1212/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
[1213/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
[1214/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
[1215/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod
[1216/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod
[1217/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod
[1218/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod
[1219/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod
[1220/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod
[1221/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod
[1222/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod
[1223/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod
[1224/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod
[1225/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod
[1226/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod
[1227/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod
[1228/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod
[1229/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod
[1230/1645] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod
[1231/1645] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod
[1232/1645] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod
[1233/1645] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod
[1234/1645] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod
[1235/1645] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod
[1236/1645] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod
[1237/1645] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod
[1238/1645] Running nrnivmodl-core with internal mod files
WARNING: No mod files found in '/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/bin', compiling default ones only!
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
[1239/1645] Building special[-core] for test group external_ringtest
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff
cfiles =
Mod files: "./halfgap.mod"

MODOBJS= ./halfgap.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/halfgap.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
Thread Safe
 -> Compiling halfgap.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1240/1645] Building special[-core] for test group pynrn
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./unitstest.mod" "./version_macros.mod"

MODOBJS= ./follower.o ./gap.o ./unitstest.o ./version_macros.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Processing arm64/corenrn/mod2c/follower.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/gap.mod
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././follower.mod
 -> NMODL .././gap.mod
 -> NMODL .././unitstest.mod
Translating follower.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/arm64/follower.cpp
Thread Safe
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/arm64/unitstest.cpp
Translating gap.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/arm64/gap.cpp
Thread Safe
Thread Safe
 -> NMODL .././version_macros.mod
 -> Compiling follower.cpp
 -> Compiling gap.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/1f5d8c6fccd77006001683046066d7e5979a5450fc886d813464561a8f8fd2c1/arm64/version_macros.cpp
Thread Safe
 -> Compiling unitstest.cpp
 -> Compiling version_macros.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1241/1645] Building special[-core] for test group testcorenrn_bbcore
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876
cfiles =
Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod"

MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhderiv.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhkin.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse
[NMODL] [info] :: Running sympy solve visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhwatch.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/nacum.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././Gfluct3.mod
 -> NMODL .././hhderiv.mod
 -> NMODL .././hhkin.mod
Translating hhkin.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp
Translating hhderiv.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp
Thread Safe
Thread Safe
Thread Safe
 -> NMODL .././hhwatch.mod
 -> NMODL .././nacum.mod
 -> NMODL .././vecevent.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp
Translating nacum.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp
Thread Safe
Thread Safe
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling Gfluct3.cpp
 -> Compiling hhderiv.cpp
 -> Compiling hhkin.cpp
 -> Compiling hhwatch.cpp
 -> Compiling nacum.cpp
 -> Compiling vecevent.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1242/1645] Building special[-core] for test group coreneuron_modtests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056
cfiles =
Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod"

MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./invlfire.o ./natrans.o ./netmove.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/axial_pp.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/bacur.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/axial.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/banocur.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/fornetcon.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfire.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netmove.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/natrans.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/sample.mod
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/watchrange.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././axial.mod
 -> NMODL .././axial_pp.mod
 -> NMODL .././bacur.mod
Translating axial_pp.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/axial_pp.cpp
INCLUDEing axial.inc
Translating axial.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/axial.cpp
INCLUDEing axial.inc
Thread Safe
Thread Safe
Translating bacur.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/bacur.cpp
 -> NMODL .././banocur.mod
 -> NMODL .././fornetcon.mod
Thread Safe
 -> NMODL .././invlfire.mod
Translating banocur.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/banocur.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/fornetcon.cpp
Thread Safe
 -> NMODL .././natrans.mod
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/invlfire.cpp
Thread Safe
 -> NMODL .././netmove.mod
 -> NMODL .././sample.mod
Translating natrans.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/natrans.cpp
Thread Safe
 -> NMODL .././unitstest.mod
Translating netmove.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/netmove.cpp
Thread Safe
Translating sample.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/sample.cpp
Thread Safe
 -> NMODL .././version_macros.mod
 -> NMODL .././watchrange.mod
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/unitstest.cpp
Thread Safe
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/version_macros.cpp
 -> Compiling axial.cpp
Thread Safe
Translating watchrange.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/9a5c2ef270a2793c24e1bba0215efdd5544ecc21005c2a0d66b88f7fe78a4056/arm64/watchrange.cpp
 -> Compiling axial_pp.cpp
Thread Safe
 -> Compiling bacur.cpp
 -> Compiling banocur.cpp
 -> Compiling fornetcon.cpp
 -> Compiling invlfire.cpp
 -> Compiling natrans.cpp
 -> Compiling netmove.cpp
 -> Compiling sample.cpp
 -> Compiling unitstest.cpp
 -> Compiling version_macros.cpp
 -> Compiling watchrange.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1243/1645] Generating pynrn/basic_tests_py3.10/test/pynrn/gui_pycallobject.py
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[1278/1645] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py
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[1280/1645] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py
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[1282/1645] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py
[1283/1645] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py
[1284/1645] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1285/1645] Generating coreneuron_modtests/inputpresyn_py_cpu/test/coreneuron/test_spikes.py
[1286/1645] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/common/catch2_main.cpp.o
[1287/1645] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py
[1288/1645] Generating ../../external_ringtest/neuron/args.py
[1289/1645] Generating ../../external_ringtest/neuron/cell.hoc
[1290/1645] Generating ../../external_ringtest/neuron/celluniform.hoc
[1291/1645] Generating ../../external_ringtest/neuron/commonutils.py
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[1296/1645] Generating ../../external_ringtest/neuron/settings.py
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[1298/1645] Generating ../../external_ringtest/neuron_mpi/cell.hoc
[1299/1645] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc
[1300/1645] Generating ../../external_ringtest/neuron_mpi/commonutils.py
[1301/1645] Generating ../../external_ringtest/neuron_mpi/ranparm.py
[1302/1645] Linking CXX executable bin/test/nrn-benchmarks
[1303/1645] Generating ../../external_ringtest/neuron_mpi/ring.py
[1304/1645] Generating ../../external_ringtest/neuron_mpi/ringtest.py
[1305/1645] Generating ../../external_ringtest/neuron_mpi/ringuniform.py
[1306/1645] Generating ../../external_ringtest/neuron_mpi/settings.py
[1307/1645] Generating ../../external_ringtest/neuron_mpi_python/args.py
[1308/1645] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc
[1309/1645] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc
[1310/1645] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py
[1311/1645] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py
[1312/1645] Generating ../../external_ringtest/neuron_mpi_python/ring.py
[1313/1645] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py
[1314/1645] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py
[1315/1645] Generating ../../external_ringtest/neuron_mpi_python/settings.py
[1316/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py
[1317/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc
[1318/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc
[1319/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py
[1320/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py
[1321/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py
[1322/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py
[1323/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py
[1324/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py
[1325/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py
[1326/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc
[1327/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc
[1328/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py
[1329/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py
[1330/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py
[1331/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py
[1332/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py
[1333/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py
[1334/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py
[1335/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc
[1336/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc
[1337/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py
[1338/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py
[1339/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py
[1340/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py
[1341/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py
[1342/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py
[1343/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py
[1344/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc
[1345/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc
[1346/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py
[1347/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py
[1348/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py
[1349/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py
[1350/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py
[1351/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py
[1352/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py
[1353/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc
[1354/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc
[1355/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py
[1356/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py
[1357/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py
[1358/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py
[1359/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py
[1360/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py
[1361/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py
[1362/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc
[1363/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/celluniform.hoc
[1364/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py
[1365/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py
[1366/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py
[1367/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py
[1368/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py
[1369/1645] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py
[1370/1645] Generating ../../testcorenrn_bbcore/neuron/common.hoc
[1371/1645] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc
[1372/1645] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc
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[1376/1645] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc
[1377/1645] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1378/1645] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc
[1379/1645] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc
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[1382/1645] Generating ../../testcorenrn_conc/neuron/common.hoc
[1383/1645] Generating ../../testcorenrn_conc/neuron/defvar.hoc
[1384/1645] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc
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[1386/1645] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc
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[1388/1645] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1389/1645] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc
[1390/1645] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc
[1391/1645] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc
[1392/1645] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc
[1393/1645] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc
[1394/1645] Generating ../../testcorenrn_deriv/neuron/common.hoc
[1395/1645] Generating ../../testcorenrn_deriv/neuron/defvar.hoc
[1396/1645] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc
[1397/1645] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc
[1398/1645] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc
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[1400/1645] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc
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[1402/1645] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc
[1403/1645] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc
[1404/1645] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc
[1405/1645] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc
[1406/1645] Generating ../../testcorenrn_gf/neuron/common.hoc
[1407/1645] Generating ../../testcorenrn_gf/neuron/defvar.hoc
[1408/1645] Generating ../../testcorenrn_gf/neuron/testgf.hoc
[1409/1645] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc
[1410/1645] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc
[1411/1645] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc
[1412/1645] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1413/1645] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc
[1414/1645] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc
[1415/1645] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc
[1416/1645] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc
[1417/1645] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc
[1418/1645] Generating ../../testcorenrn_kin/neuron/common.hoc
[1419/1645] Generating ../../testcorenrn_kin/neuron/defvar.hoc
[1420/1645] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc
[1421/1645] Generating ../../testcorenrn_kin/neuron/testkin.hoc
[1422/1645] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc
[1423/1645] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc
[1424/1645] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc
[1425/1645] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1426/1645] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc
[1427/1645] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc
[1428/1645] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc
[1429/1645] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc
[1430/1645] Generating ../../testcorenrn_patstim/neuron/common.hoc
[1431/1645] Generating ../../testcorenrn_patstim/neuron/defvar.hoc
[1432/1645] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc
[1433/1645] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc
[1434/1645] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc
[1435/1645] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc
[1436/1645] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc
[1437/1645] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc
[1438/1645] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc
[1439/1645] Generating ../../testcorenrn_vecplay/neuron/common.hoc
[1440/1645] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc
[1441/1645] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc
[1442/1645] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc
[1443/1645] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc
[1444/1645] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc
[1445/1645] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc
[1446/1645] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1447/1645] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc
[1448/1645] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc
[1449/1645] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc
[1450/1645] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc
[1451/1645] Generating ../../testcorenrn_vecevent/neuron/common.hoc
[1452/1645] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc
[1453/1645] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc
[1454/1645] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc
[1455/1645] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc
[1456/1645] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc
[1457/1645] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc
[1458/1645] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1459/1645] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc
[1460/1645] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc
[1461/1645] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc
[1462/1645] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc
[1463/1645] Generating ../../testcorenrn_watch/neuron/common.hoc
[1464/1645] Generating ../../testcorenrn_watch/neuron/testwatch.hoc
[1465/1645] Generating ../../testcorenrn_watch/neuron/defvar.hoc
[1466/1645] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc
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[1471/1645] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc
[1472/1645] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc
[1473/1645] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc
[1474/1645] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc
[1475/1645] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc
[1476/1645] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc
[1477/1645] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc
[1478/1645] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc
[1479/1645] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc
[1480/1645] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc
[1481/1645] Building special[-core] for test group reduced_dentate
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead
cfiles =
Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod"

MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Ca.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KA.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_CadepK.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Parsing Units
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRf.mod
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRs.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Na.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/CaBK.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_M.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_UK.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_sAHP.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/LcaMig.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_KIn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_na8st.mod
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ccanl.mod
[NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse
[NMODL] [info] :: Running sympy solve visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/bgka.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ggap.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/gskch.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/holdingi.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hyperde3.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ichan2.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/iconc_Ca.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/kcaPR.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/na3n.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/nca.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/spines.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/tca.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C backend code generator
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././Aradi_Ca.mod
 -> NMODL .././Aradi_CadepK.mod
 -> NMODL .././Aradi_KA.mod
Translating Aradi_KA.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp
Thread Safe
Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp
Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp
Thread Safe
Thread Safe
 -> NMODL .././Aradi_KDRf.mod
 -> NMODL .././Aradi_KDRs.mod
 -> NMODL .././Aradi_Na.mod
Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp
Thread Safe
Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp
Thread Safe
Translating Aradi_Na.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp
Thread Safe
 -> NMODL .././CaBK.mod
 -> NMODL .././DGC_M.mod
 -> NMODL .././DGC_UK.mod
Translating CaBK.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp
Translating DGC_M.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp
Thread Safe
Thread Safe
 -> NMODL .././DGC_sAHP.mod
Translating DGC_UK.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp
Thread Safe
 -> NMODL .././LcaMig.mod
 -> NMODL .././Gfluct3.mod
 -> NMODL .././SH_KIn.mod
Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp
Thread Safe
 -> NMODL .././SH_na8st.mod
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp
Thread Safe
Translating LcaMig.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp
Thread Safe
Translating SH_KIn.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp
Thread Safe
 -> NMODL .././bgka.mod
 -> NMODL .././ccanl.mod
 -> NMODL .././ggap.mod
Translating SH_na8st.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp
NEURON's CVode method ignores conservation
Thread Safe
Translating bgka.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp
Thread Safe
 -> NMODL .././gskch.mod
Translating ccanl.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp
 -> NMODL .././holdingi.mod
Thread Safe
 -> NMODL .././hyperde3.mod
Translating ggap.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp
Thread Safe
Translating gskch.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp
Thread Safe
Translating holdingi.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp
Thread Safe
 -> NMODL .././ichan2.mod
 -> NMODL .././iconc_Ca.mod
 -> NMODL .././kcaPR.mod
Translating hyperde3.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp
Thread Safe
 -> NMODL .././na3n.mod
Translating ichan2.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp
Thread Safe
Translating iconc_Ca.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp
Thread Safe
Translating kcaPR.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp
Thread Safe
 -> NMODL .././nca.mod
 -> NMODL .././spines.mod
 -> NMODL .././tca.mod
Translating na3n.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp
Thread Safe
 -> NMODL .././vecevent.mod
Translating nca.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp
Translating spines.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp
Thread Safe
Thread Safe
 -> Compiling Aradi_Ca.cpp
 -> Compiling Aradi_CadepK.cpp
Translating tca.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp
Thread Safe
 -> Compiling Aradi_KA.cpp
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling Aradi_KDRf.cpp
 -> Compiling Aradi_KDRs.cpp
 -> Compiling Aradi_Na.cpp
 -> Compiling CaBK.cpp
 -> Compiling DGC_M.cpp
 -> Compiling DGC_UK.cpp
 -> Compiling DGC_sAHP.cpp
 -> Compiling Gfluct3.cpp
 -> Compiling LcaMig.cpp
 -> Compiling SH_KIn.cpp
 -> Compiling SH_na8st.cpp
 -> Compiling bgka.cpp
 -> Compiling ccanl.cpp
 -> Compiling ggap.cpp
 -> Compiling gskch.cpp
 -> Compiling holdingi.cpp
 -> Compiling hyperde3.cpp
 -> Compiling ichan2.cpp
 -> Compiling iconc_Ca.cpp
 -> Compiling kcaPR.cpp
 -> Compiling na3n.cpp
 -> Compiling nca.cpp
 -> Compiling spines.cpp
 -> Compiling tca.cpp
 -> Compiling vecevent.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
[1482/1645] Generating ../../reduced_dentate/neuron/commonutils.py
[1483/1645] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat
[1484/1645] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat
[1485/1645] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat
[1486/1645] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat
[1487/1645] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat
[1488/1645] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat
[1489/1645] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat
[1490/1645] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat
[1491/1645] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat
[1492/1645] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat
[1493/1645] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat
[1494/1645] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat
[1495/1645] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat
[1496/1645] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat
[1497/1645] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat
[1498/1645] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat
[1499/1645] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat
[1500/1645] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat
[1501/1645] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat
[1502/1645] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat
[1503/1645] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat
[1504/1645] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat
[1505/1645] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat
[1506/1645] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat
[1507/1645] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat
[1508/1645] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat
[1509/1645] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat
[1510/1645] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat
[1511/1645] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat
[1512/1645] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat
[1513/1645] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat
[1514/1645] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat
[1515/1645] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat
[1516/1645] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat
[1517/1645] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat
[1518/1645] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat
[1519/1645] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat
[1520/1645] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat
[1521/1645] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat
[1522/1645] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat
[1523/1645] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat
[1524/1645] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat
[1525/1645] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat
[1526/1645] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat
[1527/1645] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat
[1528/1645] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat
[1529/1645] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat
[1530/1645] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat
[1531/1645] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat
[1532/1645] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat
[1533/1645] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat
[1534/1645] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat
[1535/1645] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat
[1536/1645] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat
[1537/1645] Generating ../../reduced_dentate/neuron/lib.hoc
[1538/1645] Generating ../../reduced_dentate/neuron/run.hoc
[1539/1645] Generating ../../reduced_dentate/neuron/main.hoc
[1540/1645] Generating ../../reduced_dentate/neuron/parameters/Control.hoc
[1541/1645] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc
[1542/1645] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc
[1543/1645] Generating ../../reduced_dentate/neuron/templates/DGC.hoc
[1544/1645] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc
[1545/1645] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc
[1546/1645] Generating ../../reduced_dentate/neuron/templates/Dict.hoc
[1547/1645] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc
[1548/1645] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc
[1549/1645] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc
[1550/1645] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc
[1551/1645] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc
[1552/1645] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc
[1553/1645] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc
[1554/1645] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc
[1555/1645] Generating ../../reduced_dentate/neuron/templates/defvar.hoc
[1556/1645] Generating ../../reduced_dentate/neuron/templates/Value.hoc
[1557/1645] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc
[1558/1645] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py
[1559/1645] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat
[1560/1645] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat
[1561/1645] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat
[1562/1645] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat
[1563/1645] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat
[1564/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat
[1565/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat
[1566/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat
[1567/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat
[1568/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat
[1569/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat
[1570/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat
[1571/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat
[1572/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat
[1573/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat
[1574/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat
[1575/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat
[1576/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat
[1577/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat
[1578/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat
[1579/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat
[1580/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat
[1581/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat
[1582/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat
[1583/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat
[1584/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat
[1585/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat
[1586/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat
[1587/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat
[1588/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat
[1589/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat
[1590/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat
[1591/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat
[1592/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat
[1593/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat
[1594/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat
[1595/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat
[1596/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat
[1597/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat
[1598/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat
[1599/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat
[1600/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat
[1601/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat
[1602/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat
[1603/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat
[1604/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat
[1605/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat
[1606/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat
[1607/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat
[1608/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat
[1609/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat
[1610/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat
[1611/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat
[1612/1645] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc
[1613/1645] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat
[1614/1645] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc
[1615/1645] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc
[1616/1645] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc
[1617/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc
[1618/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc
[1619/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc
[1620/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc
[1621/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc
[1622/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc
[1623/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc
[1624/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc
[1625/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc
[1626/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc
[1627/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc
[1628/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc
[1629/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc
[1630/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc
[1631/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc
[1632/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc
[1633/1645] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc
[1634/1645] Building CXX object test/coreneuron/unit/interleave_info/CMakeFiles/interleave_info_bin.dir/check_constructors.cpp.o
[1635/1645] Building CXX object test/coreneuron/unit/cmdline_interface/CMakeFiles/cmd_interface_test_bin.dir/test_cmdline_interface.cpp.o
[1636/1645] Linking CXX executable bin/interleave_info_bin
[1637/1645] Linking CXX executable bin/cmd_interface_test_bin
[1638/1645] Building CXX object test/coreneuron/unit/alignment/CMakeFiles/alignment_test_bin.dir/alignment.cpp.o
[1639/1645] Linking CXX executable bin/alignment_test_bin
[1640/1645] Building CXX object test/coreneuron/unit/queueing/CMakeFiles/queuing_test_bin.dir/test_queueing.cpp.o
[1641/1645] Linking CXX executable bin/queuing_test_bin
[1642/1645] Building CXX object test/coreneuron/unit/solver/CMakeFiles/test-solver.dir/test_solver.cpp.o
[1643/1645] Linking CXX executable bin/test-solver
[1644/1645] Building CXX object test/coreneuron/unit/lfp/CMakeFiles/lfp_test_bin.dir/lfp.cpp.o
[1645/1645] Linking CXX executable bin/lfp_test_bin
[32;1m$ ccache -vs 2>/dev/null[0;m
Cache directory:    /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/ccache
Config file:        /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.7.2/etc/ccache.conf
Stats updated:      Fri May 26 15:38:39 2023
Cacheable calls:      569 /  569 (100.0%)
  Hits:                 0 /  569 ( 0.00%)
    Direct:             0
    Preprocessed:       0
  Misses:             569 /  569 (100.0%)
Successful lookups:
  Direct:               0 /  569 ( 0.00%)
  Preprocessed:         0 /  569 ( 0.00%)
Local storage:
  Cache size (GB):   2.17 / 5.00 (43.37%)
  Files:            20311
  Hits:                 0 /  569 ( 0.00%)
  Misses:             569 /  569 (100.0%)
  Reads:             1138
  Writes:            1071
[32;1m$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg[0;m
[32;1m$ cat src/nrnpython/setup.cfg[0;m
[install]
prefix=
[32;1m$ ctest --output-on-failure[0;m
Test project /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build
        Start 209: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start 217: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
  1/268 Test #217: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ..................   Passed    1.11 sec
        Start 223: testcorenrn_conc::coreneuron_cpu_offline::preparation
  2/268 Test #223: testcorenrn_conc::coreneuron_cpu_offline::preparation ....................   Passed    0.28 sec
        Start 229: testcorenrn_deriv::coreneuron_cpu_offline::preparation
  3/268 Test #209: external_ringtest::coreneuron_cpu_mpi_offline::preparation ...............   Passed    1.57 sec
        Start 235: testcorenrn_gf::coreneuron_cpu_offline::preparation
  4/268 Test #229: testcorenrn_deriv::coreneuron_cpu_offline::preparation ...................   Passed    0.30 sec
        Start 241: testcorenrn_kin::coreneuron_cpu_offline::preparation
  5/268 Test #235: testcorenrn_gf::coreneuron_cpu_offline::preparation ......................   Passed    0.30 sec
        Start 246: testcorenrn_patstim::coreneuron_cpu_offline::preparation
  6/268 Test #241: testcorenrn_kin::coreneuron_cpu_offline::preparation .....................   Passed    0.28 sec
        Start 128: pyinit::nrniv_py3.10_python_check_sys_path::preparation
  7/268 Test #128: pyinit::nrniv_py3.10_python_check_sys_path::preparation ..................   Passed    0.02 sec
        Start 130: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation
  8/268 Test #130: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ...............   Passed    0.02 sec
        Start 132: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation
  9/268 Test #132: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................   Passed    0.02 sec
        Start 134: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation
 10/268 Test #134: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation .............   Passed    0.02 sec
        Start 136: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation
 11/268 Test #136: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ...........   Passed    0.02 sec
        Start 138: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation
 12/268 Test #138: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........   Passed    0.02 sec
        Start 140: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation
 13/268 Test #140: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ...........   Passed    0.02 sec
        Start 142: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation
 14/268 Test #142: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........   Passed    0.02 sec
        Start 144: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation
 15/268 Test #144: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ......   Passed    0.02 sec
        Start 146: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation
 16/268 Test #146: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ...   Passed    0.02 sec
        Start 148: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation
 17/268 Test #246: testcorenrn_patstim::coreneuron_cpu_offline::preparation .................   Passed    0.31 sec
        Start 252: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
 18/268 Test #148: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation .......   Passed    0.02 sec
        Start 150: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation
 19/268 Test #150: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation ....   Passed    0.02 sec
        Start 152: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation
 20/268 Test #152: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........   Passed    0.02 sec
        Start 154: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation
 21/268 Test #154: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation .....   Passed    0.02 sec
        Start 156: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation
 22/268 Test #156: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation .......   Passed    0.02 sec
        Start 158: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation
 23/268 Test #158: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation ....   Passed    0.02 sec
        Start 164: pyinit::nrniv_pydef_python_check_sys_path::preparation
 24/268 Test #164: pyinit::nrniv_pydef_python_check_sys_path::preparation ...................   Passed    0.02 sec
        Start 166: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation
 25/268 Test #166: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................   Passed    0.02 sec
        Start 168: pyinit::nrniv_pydef_python_check_sys_prefix::preparation
 26/268 Test #168: pyinit::nrniv_pydef_python_check_sys_prefix::preparation .................   Passed    0.02 sec
        Start 170: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation
 27/268 Test #170: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation ..............   Passed    0.02 sec
        Start 172: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation
 28/268 Test #172: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............   Passed    0.02 sec
        Start 174: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation
 29/268 Test #174: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation .........   Passed    0.02 sec
        Start 176: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation
 30/268 Test #176: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............   Passed    0.02 sec
        Start 178: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation
 31/268 Test #178: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation .........   Passed    0.02 sec
        Start 180: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation
 32/268 Test #252: testcorenrn_vecplay::coreneuron_cpu_offline::preparation .................   Passed    0.29 sec
        Start 264: testcorenrn_watch::coreneuron_cpu_offline::preparation
 33/268 Test #180: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation .......   Passed    0.02 sec
        Start 182: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation
 34/268 Test #182: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation ....   Passed    0.02 sec
        Start 184: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation
 35/268 Test #184: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........   Passed    0.02 sec
        Start 186: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation
 36/268 Test #186: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation .....   Passed    0.02 sec
        Start 188: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation
 37/268 Test #188: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation .........   Passed    0.02 sec
        Start 190: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation
 38/268 Test #190: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ......   Passed    0.02 sec
        Start 192: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation
 39/268 Test #192: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........   Passed    0.02 sec
        Start 194: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation
 40/268 Test #194: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation .....   Passed    0.02 sec
        Start 202: external_ringtest::neuron
 41/268 Test #264: testcorenrn_watch::coreneuron_cpu_offline::preparation ...................   Passed    0.30 sec
        Start 203: external_ringtest::neuron_mpi
 42/268 Test #203: external_ringtest::neuron_mpi ............................................   Passed    0.88 sec
        Start 204: external_ringtest::neuron_mpi_python
 43/268 Test #202: external_ringtest::neuron ................................................   Passed    1.04 sec
        Start 213: testcorenrn_bbcore::neuron
 44/268 Test #213: testcorenrn_bbcore::neuron ...............................................   Passed    0.29 sec
        Start 214: testcorenrn_bbcore::coreneuron_cpu_online
 45/268 Test #214: testcorenrn_bbcore::coreneuron_cpu_online ................................   Passed    0.77 sec
        Start 215: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
 46/268 Test #204: external_ringtest::neuron_mpi_python .....................................   Passed    1.30 sec
        Start 205: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
 47/268 Test #215: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ...............   Passed    0.58 sec
        Start 216: testcorenrn_bbcore::coreneuron_cpu_offline
 48/268 Test #216: testcorenrn_bbcore::coreneuron_cpu_offline ...............................   Passed    0.38 sec
        Start 219: testcorenrn_conc::neuron
 49/268 Test #219: testcorenrn_conc::neuron .................................................   Passed    0.28 sec
        Start 220: testcorenrn_conc::coreneuron_cpu_online
 50/268 Test #220: testcorenrn_conc::coreneuron_cpu_online ..................................   Passed    0.55 sec
        Start 221: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 51/268 Test #205: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................   Passed    1.73 sec
        Start 206: external_ringtest::coreneuron_cpu_mpi
 52/268 Test #221: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate .................   Passed    0.60 sec
        Start 222: testcorenrn_conc::coreneuron_cpu_offline
 53/268 Test #222: testcorenrn_conc::coreneuron_cpu_offline .................................   Passed    0.26 sec
        Start 225: testcorenrn_deriv::neuron
 54/268 Test #206: external_ringtest::coreneuron_cpu_mpi ....................................   Passed    0.90 sec
        Start 207: external_ringtest::coreneuron_cpu_mpi_python
 55/268 Test #225: testcorenrn_deriv::neuron ................................................   Passed    0.29 sec
        Start 226: testcorenrn_deriv::coreneuron_cpu_online
 56/268 Test #226: testcorenrn_deriv::coreneuron_cpu_online .................................   Passed    0.79 sec
        Start 227: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 57/268 Test #207: external_ringtest::coreneuron_cpu_mpi_python .............................   Passed    1.27 sec
        Start 208: external_ringtest::coreneuron_cpu_mpi_offline
 58/268 Test #227: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................   Passed    0.59 sec
        Start 228: testcorenrn_deriv::coreneuron_cpu_offline
 59/268 Test #228: testcorenrn_deriv::coreneuron_cpu_offline ................................   Passed    0.25 sec
        Start 237: testcorenrn_kin::neuron
 60/268 Test #208: external_ringtest::coreneuron_cpu_mpi_offline ............................   Passed    0.54 sec
        Start 231: testcorenrn_gf::neuron
 61/268 Test #237: testcorenrn_kin::neuron ..................................................   Passed    0.29 sec
        Start 238: testcorenrn_kin::coreneuron_cpu_online
 62/268 Test #231: testcorenrn_gf::neuron ...................................................   Passed    0.45 sec
        Start 232: testcorenrn_gf::coreneuron_cpu_online
 63/268 Test #238: testcorenrn_kin::coreneuron_cpu_online ...................................   Passed    0.57 sec
        Start 239: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 64/268 Test #232: testcorenrn_gf::coreneuron_cpu_online ....................................   Passed    0.71 sec
        Start 233: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 65/268 Test #239: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ..................   Passed    0.59 sec
        Start 240: testcorenrn_kin::coreneuron_cpu_offline
 66/268 Test #240: testcorenrn_kin::coreneuron_cpu_offline ..................................   Passed    0.27 sec
        Start   1: cmd_interface_test
 67/268 Test #233: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ...................   Passed    0.79 sec
        Start 234: testcorenrn_gf::coreneuron_cpu_offline
 68/268 Test   #1: cmd_interface_test .......................................................   Passed    0.36 sec
        Start   2: interleave_info_constructor_test
 69/268 Test   #2: interleave_info_constructor_test .........................................   Passed    0.21 sec
        Start   3: alignment_test
 70/268 Test #234: testcorenrn_gf::coreneuron_cpu_offline ...................................   Passed    0.38 sec
        Start 243: testcorenrn_patstim::neuron
 71/268 Test   #3: alignment_test ...........................................................   Passed    0.21 sec
        Start   4: queuing_test
 72/268 Test   #4: queuing_test .............................................................   Passed    0.22 sec
        Start   5: test-solver
 73/268 Test #243: testcorenrn_patstim::neuron ..............................................   Passed    0.32 sec
        Start 244: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
 74/268 Test   #5: test-solver ..............................................................   Passed    0.63 sec
        Start   6: lfp_test
 75/268 Test #244: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ..................   Passed    0.82 sec
        Start 245: testcorenrn_patstim::coreneuron_cpu_offline
 76/268 Test   #6: lfp_test .................................................................   Passed    0.42 sec
        Start   7: unit_tests::testneuron
 77/268 Test #245: testcorenrn_patstim::coreneuron_cpu_offline ..............................   Passed    0.27 sec
        Start 248: testcorenrn_vecplay::neuron
 78/268 Test   #7: unit_tests::testneuron ...................................................   Passed    0.26 sec
        Start   8: ringtest
 79/268 Test #248: testcorenrn_vecplay::neuron ..............................................   Passed    0.32 sec
        Start 249: testcorenrn_vecplay::coreneuron_cpu_online
 80/268 Test   #8: ringtest .................................................................   Passed    0.20 sec
        Start   9: connect_dend
 81/268 Test   #9: connect_dend .............................................................   Passed    0.15 sec
        Start  10: mpi_init::nrniv_mpiopt
 82/268 Test  #10: mpi_init::nrniv_mpiopt ...................................................   Passed    0.34 sec
        Start  11: mpi_init::nrniv_nrnmpi_init
 83/268 Test #249: testcorenrn_vecplay::coreneuron_cpu_online ...............................   Passed    0.60 sec
        Start 250: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
 84/268 Test  #11: mpi_init::nrniv_nrnmpi_init ..............................................   Passed    0.32 sec
        Start  12: mpi_init::python_nrnmpi_init
 85/268 Test #250: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ..............   Passed    0.83 sec
        Start 251: testcorenrn_vecplay::coreneuron_cpu_offline
 86/268 Test  #12: mpi_init::python_nrnmpi_init .............................................   Passed    0.74 sec
        Start  13: mpi_init::python_mpienv
 87/268 Test #251: testcorenrn_vecplay::coreneuron_cpu_offline ..............................   Passed    0.28 sec
        Start 260: testcorenrn_watch::neuron
 88/268 Test #260: testcorenrn_watch::neuron ................................................   Passed    0.40 sec
        Start 261: testcorenrn_watch::coreneuron_cpu_online
 89/268 Test  #13: mpi_init::python_mpienv ..................................................   Passed    0.71 sec
        Start  14: mpi_init::nrniv_mpiexec_mpiopt
 90/268 Test  #14: mpi_init::nrniv_mpiexec_mpiopt ...........................................   Passed    0.26 sec
        Start  15: mpi_init::nrniv_mpiexec_nrnmpi_init
 91/268 Test #261: testcorenrn_watch::coreneuron_cpu_online .................................   Passed    0.64 sec
        Start 262: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
 92/268 Test  #15: mpi_init::nrniv_mpiexec_nrnmpi_init ......................................   Passed    0.26 sec
        Start  16: mpi_init::python_mpiexec_nrnmpi_init
 93/268 Test #262: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................   Passed    0.83 sec
        Start 263: testcorenrn_watch::coreneuron_cpu_offline
 94/268 Test  #16: mpi_init::python_mpiexec_nrnmpi_init .....................................   Passed    0.80 sec
        Start  17: mpi_init::python_mpiexec_mpienv
 95/268 Test #263: testcorenrn_watch::coreneuron_cpu_offline ................................   Passed    0.28 sec
        Start 266: testcorenrn_netstimdirect::direct_netstimdirect
 96/268 Test  #17: mpi_init::python_mpiexec_mpienv ..........................................   Passed    1.01 sec
        Start  18: pynrn::basic_tests_py3.10
 97/268 Test #266: testcorenrn_netstimdirect::direct_netstimdirect ..........................   Passed    0.89 sec
        Start 267: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
 98/268 Test #267: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate .........   Passed    0.99 sec
        Start  19: coverage_tests::cover_tests
        Start  20: example_nmodl::ca_ap_hoc
 99/268 Test  #20: example_nmodl::ca_ap_hoc .................................................   Passed    0.72 sec
        Start  21: example_nmodl::cabpump_hoc
100/268 Test  #19: coverage_tests::cover_tests ..............................................   Passed    0.80 sec
        Start  22: example_nmodl::cachan_hoc
101/268 Test  #21: example_nmodl::cabpump_hoc ...............................................   Passed    0.27 sec
        Start  23: example_nmodl::cadif_hoc
102/268 Test  #22: example_nmodl::cachan_hoc ................................................   Passed    0.21 sec
        Start  24: example_nmodl::cadifusl_hoc
103/268 Test  #24: example_nmodl::cadifusl_hoc ..............................................   Passed    0.17 sec
        Start  25: example_nmodl::cadifusl1_hoc
104/268 Test  #23: example_nmodl::cadif_hoc .................................................   Passed    0.21 sec
        Start  26: example_nmodl::cadifusl2_hoc
105/268 Test  #25: example_nmodl::cadifusl1_hoc .............................................   Passed    0.15 sec
        Start  27: example_nmodl::cagk_hoc
106/268 Test  #26: example_nmodl::cadifusl2_hoc .............................................   Passed    0.14 sec
        Start  28: example_nmodl::capmp_hoc
107/268 Test  #27: example_nmodl::cagk_hoc ..................................................   Passed    0.14 sec
        Start  29: example_nmodl::cv_hoc
108/268 Test  #28: example_nmodl::capmp_hoc .................................................   Passed    0.16 sec
        Start  30: example_nmodl::fh_hoc
109/268 Test  #29: example_nmodl::cv_hoc ....................................................   Passed    0.13 sec
        Start  31: example_nmodl::fit1_hoc
110/268 Test  #30: example_nmodl::fh_hoc ....................................................   Passed    0.13 sec
        Start  32: example_nmodl::gap_hoc
111/268 Test  #31: example_nmodl::fit1_hoc ..................................................   Passed    0.13 sec
        Start  33: example_nmodl::hh1_hoc
112/268 Test  #32: example_nmodl::gap_hoc ...................................................   Passed    0.14 sec
        Start  34: example_nmodl::hhvect_hoc
113/268 Test  #33: example_nmodl::hh1_hoc ...................................................   Passed    0.14 sec
        Start  35: example_nmodl::nacum_hoc
114/268 Test  #34: example_nmodl::hhvect_hoc ................................................   Passed    0.13 sec
        Start  36: example_nmodl::nadifl1_hoc
115/268 Test  #35: example_nmodl::nacum_hoc .................................................   Passed    0.13 sec
        Start  37: example_nmodl::nadifl2_hoc
116/268 Test  #36: example_nmodl::nadifl1_hoc ...............................................   Passed    0.15 sec
        Start  38: example_nmodl::nadifl3_hoc
117/268 Test  #37: example_nmodl::nadifl2_hoc ...............................................   Passed    0.16 sec
        Start  39: example_nmodl::nadifl4_hoc
118/268 Test  #38: example_nmodl::nadifl3_hoc ...............................................   Passed    0.16 sec
        Start  40: example_nmodl::obj_ex_hoc
119/268 Test  #39: example_nmodl::nadifl4_hoc ...............................................   Passed    0.16 sec
        Start  41: example_nmodl::order_hoc
120/268 Test  #40: example_nmodl::obj_ex_hoc ................................................   Passed    0.13 sec
        Start  42: example_nmodl::passiv_hoc
121/268 Test  #42: example_nmodl::passiv_hoc ................................................   Passed    0.13 sec
        Start  43: example_nmodl::stim1_hoc
122/268 Test  #41: example_nmodl::order_hoc .................................................   Passed    0.15 sec
        Start  44: example_nmodl::syn1_hoc
123/268 Test  #43: example_nmodl::stim1_hoc .................................................   Passed    0.13 sec
        Start  45: example_nmodl::synpre_hoc
124/268 Test  #44: example_nmodl::syn1_hoc ..................................................   Passed    0.13 sec
        Start  46: example_nmodl::tstextrn_hoc
125/268 Test  #45: example_nmodl::synpre_hoc ................................................   Passed    0.15 sec
        Start  47: example_nmodl::tstpnt1_hoc
126/268 Test  #46: example_nmodl::tstextrn_hoc ..............................................   Passed    0.14 sec
        Start  48: example_nmodl::tstpnt2_hoc
127/268 Test  #47: example_nmodl::tstpnt1_hoc ...............................................   Passed    0.13 sec
        Start  49: example_nmodl::tstvec_hoc
128/268 Test  #48: example_nmodl::tstpnt2_hoc ...............................................   Passed    0.13 sec
        Start  50: example_nmodl::cagkftab_py
129/268 Test  #49: example_nmodl::tstvec_hoc ................................................   Passed    0.13 sec
        Start  51: example_nmodl::expsynspine_py
130/268 Test  #51: example_nmodl::expsynspine_py ............................................   Passed    0.62 sec
        Start  52: example_nmodl::nonlin_py
131/268 Test  #52: example_nmodl::nonlin_py .................................................   Passed    1.01 sec
        Start  53: example_nmodl::tstpnt1_py
132/268 Test  #53: example_nmodl::tstpnt1_py ................................................   Passed    0.65 sec
        Start  54: example_nmodl::tstpnt2_py
133/268 Test  #54: example_nmodl::tstpnt2_py ................................................   Passed    0.59 sec
        Start  55: example_nmodl::vlag_py
134/268 Test  #18: pynrn::basic_tests_py3.10 ................................................   Passed    7.03 sec
        Start  56: hoctests::test_loadbal_hoc
135/268 Test  #55: example_nmodl::vlag_py ...................................................   Passed    0.49 sec
        Start  57: hoctests::perf1_hoc
136/268 Test  #56: hoctests::test_loadbal_hoc ...............................................   Passed    0.59 sec
        Start  58: hoctests::test1_hoc
137/268 Test  #50: example_nmodl::cagkftab_py ...............................................   Passed    3.82 sec
        Start  59: hoctests::test2_hoc
138/268 Test  #58: hoctests::test1_hoc ......................................................   Passed    0.26 sec
        Start  60: hoctests::test3_hoc
139/268 Test  #59: hoctests::test2_hoc ......................................................   Passed    0.17 sec
        Start  61: hoctests::test4_hoc
140/268 Test  #60: hoctests::test3_hoc ......................................................   Passed    0.14 sec
        Start  62: hoctests::test5_hoc
141/268 Test  #61: hoctests::test4_hoc ......................................................   Passed    0.12 sec
        Start  63: hoctests::test6_hoc
142/268 Test  #62: hoctests::test5_hoc ......................................................   Passed    0.12 sec
        Start  64: hoctests::test7_hoc
143/268 Test  #63: hoctests::test6_hoc ......................................................   Passed    0.13 sec
        Start  65: hoctests::test8_hoc
144/268 Test  #64: hoctests::test7_hoc ......................................................   Passed    0.13 sec
        Start  66: hoctests::test9_hoc
145/268 Test  #65: hoctests::test8_hoc ......................................................   Passed    0.13 sec
        Start  67: hoctests::test_kschan_py
146/268 Test  #66: hoctests::test9_hoc ......................................................   Passed    0.13 sec
        Start  68: hoctests::test_neurondemo_py
147/268 Test  #57: hoctests::perf1_hoc ......................................................   Passed    1.02 sec
        Start  69: hoctests::test_nrniv-launch_py
148/268 Test  #69: hoctests::test_nrniv-launch_py ...........................................   Passed    0.44 sec
        Start  70: hoctests::test_shape_py
149/268 Test  #68: hoctests::test_neurondemo_py .............................................   Passed    0.64 sec
        Start  71: hoctests::test1_py
150/268 Test  #67: hoctests::test_kschan_py .................................................   Passed    0.75 sec
        Start  72: hoctests::test2_py
151/268 Test  #70: hoctests::test_shape_py ..................................................   Passed    0.82 sec
        Start  73: hoctests::test9_py
152/268 Test  #71: hoctests::test1_py .......................................................   Passed    0.75 sec
        Start  79: coreneuron_standalone::test_nrn_corenrn_standalone
153/268 Test  #72: hoctests::test2_py .......................................................   Passed    0.77 sec
        Start  80: nmodl_tests::test_table
154/268 Test  #73: hoctests::test9_py .......................................................   Passed    0.81 sec
        Start  81: nmodl_tests::test_disc
155/268 Test  #80: nmodl_tests::test_table ..................................................   Passed    0.96 sec
        Start  82: nmodl_tests::test_function_table
156/268 Test  #79: coreneuron_standalone::test_nrn_corenrn_standalone .......................   Passed    1.08 sec
        Start  83: nmodl_tests::test_kinetic
157/268 Test  #81: nmodl_tests::test_disc ...................................................   Passed    0.77 sec
        Start  84: coreneuron_modtests::version_macros
158/268 Test  #82: nmodl_tests::test_function_table .........................................   Passed    0.98 sec
        Start  85: coreneuron_modtests::fornetcon_py_cpu
159/268 Test  #83: nmodl_tests::test_kinetic ................................................   Passed    1.06 sec
        Start  86: coreneuron_modtests::direct_py_cpu
160/268 Test  #84: coreneuron_modtests::version_macros ......................................   Passed    1.44 sec
        Start  87: coreneuron_modtests::direct_hoc_cpu
161/268 Test  #85: coreneuron_modtests::fornetcon_py_cpu ....................................   Passed    1.02 sec
        Start  88: coreneuron_modtests::spikes_py_cpu
162/268 Test  #86: coreneuron_modtests::direct_py_cpu .......................................   Passed    0.95 sec
        Start  89: coreneuron_modtests::spikes_file_mode_py_cpu
163/268 Test  #87: coreneuron_modtests::direct_hoc_cpu ......................................   Passed    0.79 sec
        Start  90: coreneuron_modtests::fast_imem_py_cpu
164/268 Test  #88: coreneuron_modtests::spikes_py_cpu .......................................   Passed    1.06 sec
        Start  91: coreneuron_modtests::datareturn_py_cpu
165/268 Test  #89: coreneuron_modtests::spikes_file_mode_py_cpu .............................   Passed    1.19 sec
        Start  92: coreneuron_modtests::test_units_py_cpu
166/268 Test  #90: coreneuron_modtests::fast_imem_py_cpu ....................................   Passed    1.20 sec
        Start  93: coreneuron_modtests::test_netmove_py_cpu
167/268 Test  #92: coreneuron_modtests::test_units_py_cpu ...................................   Passed    0.82 sec
        Start  94: coreneuron_modtests::test_pointer_py_cpu
168/268 Test  #91: coreneuron_modtests::datareturn_py_cpu ...................................   Passed    1.24 sec
        Start  95: coreneuron_modtests::test_watchrange_py_cpu
169/268 Test  #93: coreneuron_modtests::test_netmove_py_cpu .................................   Passed    1.31 sec
        Start  96: coreneuron_modtests::test_psolve_py_cpu
170/268 Test  #95: coreneuron_modtests::test_watchrange_py_cpu ..............................   Passed    0.99 sec
        Start  97: coreneuron_modtests::test_ba_py_cpu
171/268 Test  #97: coreneuron_modtests::test_ba_py_cpu ......................................   Passed    0.72 sec
        Start  98: coreneuron_modtests::test_natrans_py_cpu
172/268 Test  #96: coreneuron_modtests::test_psolve_py_cpu ..................................   Passed    0.80 sec
        Start 102: nmodl_tests_coreneuron::test_table_coreneuron_cpu
173/268 Test  #98: coreneuron_modtests::test_natrans_py_cpu .................................   Passed    0.73 sec
        Start 103: nmodl_tests_coreneuron::test_disc_coreneuron_cpu
174/268 Test #102: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................   Passed    0.76 sec
        Start 104: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu
175/268 Test #103: nmodl_tests_coreneuron::test_disc_coreneuron_cpu .........................   Passed    0.75 sec
        Start 105: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu
176/268 Test #104: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ...............   Passed    0.75 sec
        Start 106: modlunit_unitstest
177/268 Test  #94: coreneuron_modtests::test_pointer_py_cpu .................................   Passed    3.55 sec
        Start 107: modlunit_hh
178/268 Test #107: modlunit_hh ..............................................................   Passed    0.09 sec
        Start 108: modlunit_stim
179/268 Test #106: modlunit_unitstest .......................................................   Passed    0.22 sec
        Start 109: modlunit_pattern
180/268 Test #108: modlunit_stim ............................................................   Passed    0.11 sec
        Start 110: pyinit::nrniv_script.py
181/268 Test #109: modlunit_pattern .........................................................   Passed    0.12 sec
        Start 111: pyinit::nrniv_script.py_error
182/268 Test #110: pyinit::nrniv_script.py ..................................................   Passed    0.15 sec
        Start 112: pyinit::nrniv_two_scripts.py
183/268 Test #111: pyinit::nrniv_script.py_error ............................................   Passed    0.17 sec
        Start 113: pyinit::nrniv_two_scripts.py_error_check_code
184/268 Test #105: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ......................   Passed    0.67 sec
        Start 114: pyinit::nrniv_two_scripts.py_error_check_output
185/268 Test #112: pyinit::nrniv_two_scripts.py .............................................   Passed    0.14 sec
        Start 115: pyinit::nrniv_python_command
186/268 Test #113: pyinit::nrniv_two_scripts.py_error_check_code ............................   Passed    0.13 sec
        Start 116: pyinit::nrniv_python_command_error
187/268 Test #114: pyinit::nrniv_two_scripts.py_error_check_output ..........................   Passed    0.12 sec
        Start 117: pyinit::nrniv_python_script.py
188/268 Test #115: pyinit::nrniv_python_command .............................................   Passed    0.13 sec
        Start 118: pyinit::nrniv_python_script.py_error
189/268 Test #116: pyinit::nrniv_python_command_error .......................................   Passed    0.13 sec
        Start 119: pyinit::nrniv_python_command_twice
190/268 Test #117: pyinit::nrniv_python_script.py ...........................................   Passed    0.13 sec
        Start 120: pyinit::nrniv_python_script.py_twice
191/268 Test #118: pyinit::nrniv_python_script.py_error .....................................   Passed    0.13 sec
        Start 121: pyinit::nrniv_python_command_args
192/268 Test #119: pyinit::nrniv_python_command_twice .......................................   Passed    0.13 sec
        Start 122: pyinit::nrniv_python_script.py_args
193/268 Test #120: pyinit::nrniv_python_script.py_twice .....................................   Passed    0.13 sec
        Start 123: pyinit::nrniv_nopython_PythonObject
194/268 Test #121: pyinit::nrniv_python_command_args ........................................   Passed    0.13 sec
        Start 124: pyinit::nrniv_nopython_PythonObject_pyexe
195/268 Test #122: pyinit::nrniv_python_script.py_args ......................................   Passed    0.13 sec
        Start 125: pyinit::nrniv_nopython_PythonObject_pyenv
196/268 Test #123: pyinit::nrniv_nopython_PythonObject ......................................   Passed    0.11 sec
        Start 126: pyinit::nrniv_py3.10_python_command_version_check
197/268 Test #124: pyinit::nrniv_nopython_PythonObject_pyexe ................................   Passed    0.11 sec
        Start 127: pyinit::nrniv_py3.10_python_check_sys_path
198/268 Test #125: pyinit::nrniv_nopython_PythonObject_pyenv ................................   Passed    0.11 sec
        Start 129: pyinit::nrniv_py3.10_nrnpython_check_sys_path
199/268 Test #126: pyinit::nrniv_py3.10_python_command_version_check ........................   Passed    0.13 sec
        Start 131: pyinit::nrniv_py3.10_python_check_sys_prefix
200/268 Test #127: pyinit::nrniv_py3.10_python_check_sys_path ...............................   Passed    0.13 sec
        Start 133: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix
201/268 Test #129: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................   Passed    0.13 sec
        Start 135: pyinit::nrniv_py3.10_python_check_sys_exec_prefix
202/268 Test #131: pyinit::nrniv_py3.10_python_check_sys_prefix .............................   Passed    0.13 sec
        Start 137: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix
203/268 Test #133: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix ..........................   Passed    0.13 sec
        Start 139: pyinit::nrniv_py3.10_python_check_sys_base_prefix
204/268 Test #135: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................   Passed    0.13 sec
        Start 141: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix
205/268 Test #137: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix .....................   Passed    0.13 sec
        Start 143: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix
206/268 Test #139: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................   Passed    0.13 sec
        Start 145: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix
207/268 Test #141: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix .....................   Passed    0.13 sec
        Start 147: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding
208/268 Test #143: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ...................   Passed    0.13 sec
        Start 149: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding
209/268 Test #145: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................   Passed    0.13 sec
        Start 151: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding
210/268 Test #147: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding ....................   Passed    0.12 sec
        Start 153: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding
211/268 Test #149: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding .................   Passed    0.13 sec
        Start 155: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding
212/268 Test #151: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding .....................   Passed    0.13 sec
        Start 157: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding
213/268 Test #153: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding ..................   Passed    0.13 sec
        Start 159: pyinit::nrniv_py3.10_python_command_import_neuron
214/268 Test #155: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding ....................   Passed    0.13 sec
        Start 160: pyinit::py3.10_command_import_neuron
215/268 Test #157: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding .................   Passed    0.13 sec
        Start 161: pyinit::nrniv_py3.10_hoc_command_nrnpython
216/268 Test #161: pyinit::nrniv_py3.10_hoc_command_nrnpython ...............................   Passed    0.35 sec
        Start 162: pyinit::nrniv_pydef_python_command_version_check
217/268 Test #162: pyinit::nrniv_pydef_python_command_version_check .........................   Passed    0.16 sec
        Start 163: pyinit::nrniv_pydef_python_check_sys_path
218/268 Test #159: pyinit::nrniv_py3.10_python_command_import_neuron ........................   Passed    0.66 sec
        Start 165: pyinit::nrniv_pydef_nrnpython_check_sys_path
219/268 Test #163: pyinit::nrniv_pydef_python_check_sys_path ................................   Passed    0.15 sec
        Start 167: pyinit::nrniv_pydef_python_check_sys_prefix
220/268 Test #160: pyinit::py3.10_command_import_neuron .....................................   Passed    0.68 sec
        Start 169: pyinit::nrniv_pydef_nrnpython_check_sys_prefix
221/268 Test #165: pyinit::nrniv_pydef_nrnpython_check_sys_path .............................   Passed    0.14 sec
        Start 171: pyinit::nrniv_pydef_python_check_sys_exec_prefix
222/268 Test #167: pyinit::nrniv_pydef_python_check_sys_prefix ..............................   Passed    0.13 sec
        Start 173: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix
223/268 Test #169: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ...........................   Passed    0.13 sec
        Start 175: pyinit::nrniv_pydef_python_check_sys_base_prefix
224/268 Test #171: pyinit::nrniv_pydef_python_check_sys_exec_prefix .........................   Passed    0.13 sec
        Start 177: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix
225/268 Test #173: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ......................   Passed    0.13 sec
        Start 179: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix
226/268 Test #175: pyinit::nrniv_pydef_python_check_sys_base_prefix .........................   Passed    0.13 sec
        Start 181: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix
227/268 Test #177: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ......................   Passed    0.13 sec
        Start 183: pyinit::nrniv_pydef_python_check_sys_stderr.encoding
228/268 Test #181: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix .................   Passed    0.13 sec
        Start 185: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding
229/268 Test #179: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix ....................   Passed    0.13 sec
        Start 187: pyinit::nrniv_pydef_python_check_sys_stdin.encoding
230/268 Test #183: pyinit::nrniv_pydef_python_check_sys_stderr.encoding .....................   Passed    0.13 sec
        Start 189: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding
231/268 Test #185: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding ..................   Passed    0.13 sec
        Start 191: pyinit::nrniv_pydef_python_check_sys_stdout.encoding
232/268 Test #187: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ......................   Passed    0.13 sec
        Start 193: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding
233/268 Test #189: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ...................   Passed    0.13 sec
        Start 195: pyinit::nrniv_pydef_python_command_import_neuron
234/268 Test #191: pyinit::nrniv_pydef_python_check_sys_stdout.encoding .....................   Passed    0.13 sec
        Start 196: pyinit::pydef_command_import_neuron
235/268 Test #193: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding ..................   Passed    0.14 sec
        Start 197: pyinit::nrniv_pydef_hoc_command_nrnpython
236/268 Test #197: pyinit::nrniv_pydef_hoc_command_nrnpython ................................   Passed    0.25 sec
        Start 198: external_nrntest
237/268 Test #195: pyinit::nrniv_pydef_python_command_import_neuron .........................   Passed    0.62 sec
        Start 218: testcorenrn_bbcore::compare_results
238/268 Test #218: testcorenrn_bbcore::compare_results ......................................   Passed    0.16 sec
        Start 224: testcorenrn_conc::compare_results
239/268 Test #196: pyinit::pydef_command_import_neuron ......................................   Passed    0.67 sec
        Start 230: testcorenrn_deriv::compare_results
240/268 Test #224: testcorenrn_conc::compare_results ........................................   Passed    0.02 sec
        Start 236: testcorenrn_gf::compare_results
241/268 Test #230: testcorenrn_deriv::compare_results .......................................   Passed    0.02 sec
        Start 242: testcorenrn_kin::compare_results
242/268 Test #236: testcorenrn_gf::compare_results ..........................................   Passed    0.02 sec
        Start 247: testcorenrn_patstim::compare_results
243/268 Test #242: testcorenrn_kin::compare_results .........................................   Passed    0.02 sec
        Start 253: testcorenrn_vecplay::compare_results
244/268 Test #247: testcorenrn_patstim::compare_results .....................................   Passed    0.02 sec
        Start 265: testcorenrn_watch::compare_results
245/268 Test #253: testcorenrn_vecplay::compare_results .....................................   Passed    0.02 sec
        Start 268: testcorenrn_netstimdirect::compare_results
246/268 Test #265: testcorenrn_watch::compare_results .......................................   Passed    0.02 sec
247/268 Test #268: testcorenrn_netstimdirect::compare_results ...............................   Passed    0.02 sec
        Start  75: parallel::partrans
248/268 Test  #75: parallel::partrans .......................................................   Passed    0.90 sec
        Start  76: parallel::netpar
249/268 Test  #76: parallel::netpar .........................................................   Passed    0.80 sec
        Start  77: parallel::bas
250/268 Test  #77: parallel::bas ............................................................   Passed    3.11 sec
        Start  78: parallel::nrntest_fast
251/268 Test  #78: parallel::nrntest_fast ...................................................   Passed    1.21 sec
        Start  99: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
252/268 Test  #99: coreneuron_modtests::spikes_mpi_file_mode_py_cpu .........................   Passed    0.95 sec
        Start 100: coreneuron_modtests::inputpresyn_py_cpu
253/268 Test #100: coreneuron_modtests::inputpresyn_py_cpu ..................................   Passed    1.05 sec
254/268 Test #198: external_nrntest .........................................................   Passed   28.40 sec
        Start 258: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
255/268 Test #258: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................   Passed    0.31 sec
        Start 199: reduced_dentate::neuron
256/268 Test #199: reduced_dentate::neuron ..................................................   Passed   16.38 sec
        Start 200: reduced_dentate::coreneuron_cpu
257/268 Test #200: reduced_dentate::coreneuron_cpu ..........................................   Passed   16.07 sec
        Start 210: external_ringtest::coreneuron_cpu_mpi_threads
258/268 Test #210: external_ringtest::coreneuron_cpu_mpi_threads ............................   Passed    0.93 sec
        Start 211: external_ringtest::coreneuron_cpu_mpi_threads_python
259/268 Test #211: external_ringtest::coreneuron_cpu_mpi_threads_python .....................   Passed    1.12 sec
        Start 254: testcorenrn_vecevent::neuron
260/268 Test #254: testcorenrn_vecevent::neuron .............................................   Passed    0.31 sec
        Start 255: testcorenrn_vecevent::coreneuron_cpu_online
261/268 Test #255: testcorenrn_vecevent::coreneuron_cpu_online ..............................   Passed    0.63 sec
        Start 256: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
262/268 Test #256: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .............   Passed    0.66 sec
        Start 257: testcorenrn_vecevent::coreneuron_cpu_offline
263/268 Test #257: testcorenrn_vecevent::coreneuron_cpu_offline .............................   Passed    0.28 sec
        Start  74: parallel::subworld
264/268 Test  #74: parallel::subworld .......................................................   Passed    1.20 sec
        Start 101: coreneuron_modtests::test_subworlds_py_cpu
265/268 Test #101: coreneuron_modtests::test_subworlds_py_cpu ...............................   Passed    1.82 sec
        Start 201: reduced_dentate::compare_results
        Start 212: external_ringtest::compare_results
        Start 259: testcorenrn_vecevent::compare_results
266/268 Test #201: reduced_dentate::compare_results .........................................   Passed    0.02 sec
267/268 Test #259: testcorenrn_vecevent::compare_results ....................................   Passed    0.02 sec
268/268 Test #212: external_ringtest::compare_results .......................................   Passed    0.02 sec

100% tests passed, 0 tests failed out of 268

Total Test time (real) = 108.13 sec
[32;1m$ cmake --build . --target install[0;m
[0/2] Re-checking globbed directories...
[1/5] Update hh.mod for CoreNEURON compatibility
[2/5] Generating help_data.dat
[3/5] cd /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.24.2/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[4/5] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:84: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:135: UserWarning: "/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:running build_scripts
[4/5] Install the project...
-- Install configuration: "Custom"
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/bin/nrn-enable-sanitizer
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/libsymtab.a
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/librxdmath.dylib
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/libnrniv.dylib
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/libvisitor.a
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/hclass3.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/hoc.cpython-310-darwin.so
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/expect_hocerr.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/psection.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/neuroml
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/neuroml/metadata.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/neuroml/morphml.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/neuroml/xml2nrn.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/neuroml/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/neuroml/neuroml.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/neuroml/rdxml.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/neuroml/biophysics.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/config.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/units.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/sections.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdException.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/options.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/plugins.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdsection.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/species.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdmath.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/rate.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/region.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/multiCompartmentReaction.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/constants.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/dimension3.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/section1d.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/export.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/initializer.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/rangevar.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/geometry.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxd.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/generalizedReaction.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/nodelist.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/node.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/gui.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/rxd/reaction.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/tests
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/tests/_subclass.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/tests/test_all.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/tests/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/tests/utils
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/strtobool.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/checkresult.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/tests/test_neuron.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/tests/test_vector.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/tests/test_rxd.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/_config_params.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/coreneuron.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/doc.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/gui2
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/gui2/setup_threejs.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/gui2/config.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/gui2/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/gui2/rangevar.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/gui2/plotshape.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/gui2/utilities.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/crxd
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/crxd/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/help_data.dat
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/gui.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/python/neuron/nonvint_block_supervisor.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nrnunits.lib.in
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/libspdlog.a
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/libfmt.a
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/dsl.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/symtab.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ext
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ext/example
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ext/example/passive.mod
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ext/example/expsyn.mod
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ext/example/exp2syn.mod
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ext/example/hh.mod
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ext/viz
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ext/viz/index.html
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ext/viz/css
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ext/viz/css/tree.css
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js/d3.min.js
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js/tree.js
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/visitor.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ast.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/ode.py
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/nmodl/_nmodl.cpython-310-darwin.so
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/libpywrapper.a
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/liblexer.a
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/libpyembed.a
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/libcoreneuron-core.a
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/libcodegen.a
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/libutil.a
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/crout_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnrandom.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/hocassrt.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/multicore.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnconf.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/wrap_sprintf.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/simeq.hpp
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/ocmisc.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/multisplit.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/oc_ansi.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/hoclist.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/membfunc.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnmpidec.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnversionmacros.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/scoplib.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/sparse.hpp
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/membdef.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/neuron.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/newton_struct.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/newton
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/newton/newton.hpp
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrncvode
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrncvode/nrnneosm.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/bbsavestate.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nmodlmutex.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/euler_thread.hpp
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/hocdec.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/md2redef.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/hocgetsym.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/section.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/euler.hpp
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/cabvars.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/options.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnmpi.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnran123.h
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/CholmodSupport
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/StdVector
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/StdDeque
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/Core
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/SparseLU
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/OrderingMethods
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/QtAlignedMalloc
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/Householder
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/PardisoSupport
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/SparseCore
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/Jacobi
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/Dense
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/SPQRSupport
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/QR
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/network/have2want.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/file_utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/utils/memory_utils.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/utils/lpt.hpp
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include//coreneuron/permute/data_layout.hpp
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/share/coreneuron/mod_func.c.pl
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/share/coreneuron/enginemech.cpp
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/bin/nmodl
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/bin/nrniv-core
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/share/coreneuron/coreneuron.cpp
-- Installing: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/lib/libcorenrnmech_internal.dylib
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnrandom.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/hocassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/multicore.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/wrap_sprintf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/simeq.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/ocmisc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/multisplit.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/oc_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/hoclist.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/membfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnversionmacros.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/scoplib.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/sparse.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/membdef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/neuron.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/newton
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/newton/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrncvode
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrncvode/nrnneosm.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/bbsavestate.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nmodlmutex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/euler_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/hocdec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/hocgetsym.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/section.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/euler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/options.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/CholmodSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/StdVector
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/StdDeque
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/Core
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/SparseLU
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/QtAlignedMalloc
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/Householder
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/PardisoSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/Dense
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/QR
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/Eigen
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/SparseQR
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/SVD
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/LU
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/Sparse
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/StdList
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/CholmodSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/CholmodSupport/CholmodSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/misc
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/misc/blas.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/misc/Kernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/misc/RealSvd2x2.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/misc/Image.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/misc/lapack.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/misc/lapacke_mangling.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/Reverse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/ConditionEstimator.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/PermutationMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/Assign.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/MathFunctionsImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseUnaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/DiagonalMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/StlIterators.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/VectorBlock.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/ReturnByValue.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/Solve.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointRank2Update.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralBlockPanelKernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/Parallelizer.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixMatrixTriangular.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/GeneralMatrixVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixVector_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix_BLAS.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularSolverVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/TriangularMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/products/SelfadjointMatrixMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/ArithmeticSequence.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/Product.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/NonMPL2.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ReshapedHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/BlasUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/StaticAssert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Constants.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/XprHelper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/MKL_support.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Macros.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/DisableStupidWarnings.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/SymbolicIndex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ForwardDeclarations.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Meta.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ConfigureVectorization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/IntegralConstant.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/ReenableStupidWarnings.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/IndexedViewHelper.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/BinaryFunctors.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/functors/NullaryFunctors.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/SelfCwiseBinaryOp.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/GenericPacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc/math_constants.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseNullaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/VectorwiseOp.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/GlobalFunctions.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseBase.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_bmod.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pruneL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pivotL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLUImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Ordering.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Eigen_Colamd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Amd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/BlockMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/IndexedViewMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/ReshapedMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Householder
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Householder/HouseholderSequence.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Householder/Householder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Householder/BlockHouseholder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport/PardisoSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSelfAdjointView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/CompressedStorage.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseColEtree.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrixBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDiagonalProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTriangularView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseAssign.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparsePermutation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMap.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDenseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseFuzzy.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/MappedSparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseBlock.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/TriangularSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCompressedBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTranspose.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/AmbiVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRedux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDot.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Jacobi/Jacobi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/QR
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/QR/FullPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseQR
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseQR/SparseQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SVD
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SVD/SVDBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SVD/BDCSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SVD/UpperBidiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LDLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport/UmfPackSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AngleAxis.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Quaternion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Rotation2D.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport/MetisSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/StlSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnapi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrncvode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnsemanticversion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/spmatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/ocfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/hoc_membf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnisaac.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/parse_with_deps.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/cspredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/dimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/hoc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrniv_mf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrn_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/deflate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/errcodes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/nrniv
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/engine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/gpu
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi/lib
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/config
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/file_utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/spconfig.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/runge.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnoc_ml.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnpy_hoc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/mech_api.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/mcran4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/hocparse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/ssimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/pgccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/fujitsufeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/gccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/iccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/open64features.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/sunprofeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/compilerfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/clangfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/sse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/msvcfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/openclfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/threefry.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/conventional
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/BlasUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/StaticAssert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Constants.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/MKL_support.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Macros.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/SymbolicIndex.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/util/Memory.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/GenericPacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseStorage.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SSE/TypeCasting.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/GPU/MathFunctions.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/MSA/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/CUDA
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/ZVector/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/Settings.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/Default/GenericPacketMathFunctions.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SVE/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/HIP/hcc/math_constants.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/TypeCasting.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/SYCL/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/GeneralBlockPanelKernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/PacketMath.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/MathFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/NEON/TypeCasting.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/MatrixProductMMA.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AltiVec/Complex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/Array.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/SolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/AssignEvaluator.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/Replicate.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/CoreIterators.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/ArrayBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/Block.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/SelfAdjointView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/GeneralProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/SolveTriangular.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/CoreEvaluators.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseNullaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/VectorwiseOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/ArrayWrapper.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/BooleanRedux.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/NestByValue.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/Ref.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/Reshaped.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/Transpose.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/Redux.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/CommaInitializer.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/GlobalFunctions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/Random.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/Diagonal.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/DenseBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/CwiseTernaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Core/Select.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_kernel_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_gemm_kernel.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_column_dfs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_dfs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_bmod.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pruneL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pivotL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLUImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Ordering.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Eigen_Colamd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Amd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/BlockMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/IndexedViewMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/ReshapedMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Householder
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Householder/HouseholderSequence.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Householder/Householder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Householder/BlockHouseholder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport
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-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSelfAdjointView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/CompressedStorage.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseColEtree.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrixBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDiagonalProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTriangularView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseAssign.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparsePermutation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMap.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDenseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseFuzzy.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/MappedSparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseBlock.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/TriangularSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCompressedBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTranspose.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/AmbiVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRedux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDot.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Jacobi/Jacobi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/QR
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/QR/FullPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseQR
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseQR/SparseQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SVD
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SVD/SVDBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SVD/BDCSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SVD/UpperBidiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LDLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport/UmfPackSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AngleAxis.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Quaternion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Rotation2D.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport/MetisSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/StlSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Eigen/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnapi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrncvode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnsemanticversion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/spmatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/ocfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/hoc_membf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnisaac.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/parse_with_deps.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/cspredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/dimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/hoc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrniv_mf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrn_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/deflate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/errcodes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/nrniv
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/engine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/gpu
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi/lib
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/config
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/file_utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/spconfig.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/runge.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnoc_ml.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/nrnpy_hoc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/mech_api.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/mcran4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/hocparse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/ssimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/pgccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/fujitsufeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/gccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/iccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/open64features.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/sunprofeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/compilerfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/clangfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/sse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/msvcfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/openclfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/threefry.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/conventional
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/conventional/Engine.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/conventional/gsl_cbrng.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/philox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/gsl_microrng.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/aes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/array.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/MicroURNG.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/u01fixedpt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/boxmuller.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/uniform.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/Random123/ars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/crout
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/crout/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/treeset.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/include/cspmatrix.h
.: replacing existing signature
.: replacing existing signature
.: replacing existing signature
.: replacing existing signature
.: replacing existing signature
"install" of folder "nrn" of folder "cellular" of folder "hpc" of folder "J730225" of folder "P126882" of folder "0" of folder "builds" of folder "gitlab-runner" of folder "Users"
35:57: execution error: Finder got an error: AppleEvent timed out. (-1712)
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "mcna.mod" "nacaex.mod" "nachan.mod" "release.mod"

Creating 'arm64' directory for .o files.

MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./mcna.o ./nacaex.o ./nachan.o ./release.o
 -> [32mCompiling[0m mod_func.cpp
 -> [32mNMODL[0m ../cabpump.mod
 -> [32mNMODL[0m ../cachan1.mod
 -> [32mNMODL[0m ../camchan.mod
Translating cachan1.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cachan1.cpp
Translating camchan.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/camchan.cpp
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cabpump.cpp
Thread Safe
Thread Safe
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> [32mNMODL[0m ../capump.mod
 -> [32mNMODL[0m ../invlfire.mod
 -> [32mNMODL[0m ../khhchan.mod
 -> [32mNMODL[0m ../mcna.mod
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/invlfire.cpp
Translating capump.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/capump.cpp
Translating khhchan.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/khhchan.cpp
Thread Safe
Thread Safe
Thread Safe
 -> [32mNMODL[0m ../nachan.mod
 -> [32mNMODL[0m ../nacaex.mod
 -> [32mNMODL[0m ../release.mod
Translating mcna.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/mcna.cpp
Thread Safe
 -> [32mCompiling[0m cabpump.cpp
Translating release.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/release.cpp
Translating nachan.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nachan.cpp
Translating nacaex.mod into /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nacaex.cpp
Thread Safe
Thread Safe
Thread Safe
 -> [32mCompiling[0m cachan1.cpp
 -> [32mCompiling[0m camchan.cpp
 -> [32mCompiling[0m capump.cpp
 -> [32mCompiling[0m invlfire.cpp
 -> [32mCompiling[0m khhchan.cpp
 -> [32mCompiling[0m mcna.cpp
 -> [32mCompiling[0m nacaex.cpp
 -> [32mCompiling[0m nachan.cpp
 -> [32mCompiling[0m release.cpp
 => [32mLINKING[0m shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => [32mLINKING[0m executable ./special LDFLAGS are:       /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/4.1.4_2/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/4.1.4_2/lib
Successfully created arm64/special
NEURON -- VERSION + HEAD (a47fc65+) 2023-05-26
Duke, Yale, and the BlueBrain Project -- Copyright 1984-2022
See http://neuron.yale.edu/neuron/credits

Additional mechanisms from files
 "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "mcna.mod" "nacaex.mod" "nachan.mod" "release.mod"
[32;1m$ export PATH=${INSTALL_DIR}/bin:${PATH}[0;m
[32;1m$ export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python/[0;m
[32;1m$ if [[ -f "${INSTALL_DIR}/bin/nrn-enable-sanitizer" ]]; then[0;m
[32;1m$ echo --- bin/nrn-enable-sanitizer ---[0;m
--- bin/nrn-enable-sanitizer ---
[32;1m$ cat bin/nrn-enable-sanitizer[0;m
#!/usr/bin/env bash
prefix="${NRNHOME:-/Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/install}"
export NRN_SANITIZER_PRELOAD_VAR=DYLD_INSERT_LIBRARIES
export NRN_SANITIZER_PRELOAD_VAL=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
if [[ "$1" == "--preload" ]]; then
  shift
  if [[ "$1" == "python" ]]; then
    # nrn-enable-sanitizer --preload python is used in the CI, but for it to
    # work on macOS we need to substitute the real Python binary in place of any
    # shims. This is done from CMake, and PYTHON_EXECUTABLE contains the real
    # binary.
    shift
    DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 /Users/gitlab-runner/builds/0/P126882/J730225/hpc/cellular/nrn/venv/bin/python "$@"
  else
    DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@"
  fi
else
  MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@"
fi
[32;1m$ echo ---[0;m
---
[32;1m$ nrn_enable_sanitizer=${INSTALL_DIR}/bin/nrn-enable-sanitizer[0;m
[32;1m$ nrn_enable_sanitizer_preload="${nrn_enable_sanitizer} --preload"[0;m
[32;1m$ else[0;m
[32;1m$ $PYTHON --version && ${nrn_enable_sanitizer_preload} python -c 'import neuron; neuron.test()'[0;m
Python 3.10.8
testBytesize (neuron.tests.test_vector.VectorTestCase)
Test that Vector.__array_interface__ returns the proper bytesize (of a double) ... ok
testEndian (neuron.tests.test_vector.VectorTestCase)
Test that Vector.__array_interface__ returns the proper byteorder (endian) ... ok
testNumpyInteraction (neuron.tests.test_vector.VectorTestCase)
Testing numpy.array <=> hoc.Vector interaction ... ok
testPerformance (neuron.tests.test_vector.VectorTestCase)
Test performance of Vector<->list,array ... ok
testABI (neuron.tests.test_neuron.NeuronTestCase)
Test use of some  Py_LIMITED_API for python3. ... ok
testExtendedSection (neuron.tests.test_neuron.NeuronTestCase) ...

Executed "l = range(1000000)".  Elapsed = 0.000019 s
Executed "v = h.Vector(l)".  Elapsed = 0.046115 s
inplace:
Executed "v.from_python(l)".  Elapsed = 0.042809 s
Executed "a = numpy.array(v)".  Elapsed = 0.003398 s
inplace:
Executed "v.to_python(a)".  Elapsed = 0.000819 s
Executed "v2 = h.Vector(a)".  Elapsed = 0.003105 s
inplace:
Executed "v2.from_python(a)".  Elapsed = 0.000790 s
Executed "l2 = list(v2)".  Elapsed = 0.038409 s
inplace:
Executed "v.to_python(l2)".  Elapsed = 0.006755 s
Executed "v2 = h.Vector(a[::-1])".  Elapsed = 0.003092 s
Executed "a2 = numpy.array(v2)".  Elapsed = 0.003259 s
test:  ok
testHClass (neuron.tests.test_neuron.NeuronTestCase)
Test subclass of hoc class. ... ok
testHelp (neuron.tests.test_neuron.NeuronTestCase) ... ok
testIterators (neuron.tests.test_neuron.NeuronTestCase)
Test section, segment, mechanism, rangevar iterators. ... ok
testRxDexistence (neuron.tests.test_neuron.NeuronTestCase) ... ok
testSectionArgOrder (neuron.tests.test_neuron.NeuronTestCase)
First optional arg for Section is name (but name="name" is recommended) ... ok
testSectionCell (neuron.tests.test_neuron.NeuronTestCase)
Section.cell() internally referenced as weakref. ... ok
testSectionListIterator (neuron.tests.test_neuron.NeuronTestCase)
As of v8.0, iteration over a SectionList does not change the cas ... ok
test_newobj_err (neuron.tests.test_neuron.NeuronTestCase)
Test deletion of incompletely constructed objects ... NEURON: generate an error
 near line 1
 ob = new NewObj(1, 2)
                      ^
        NewObj[4].execerror("generate a...")
      NewObj[4].init(0, 2)
    NewObj[3].init(1, 2)
  NewObj[2].execute1("ob = new N...", NewObj[2])
and others
ok
testpsection (neuron.tests.test_neuron.NeuronTestCase) ... Syntax:
    .. code-block::
        python


        h.xpanel('name')
        h.xpanel('name', [0-1])
        h.xpanel()
        h.xpanel(x, y)
        h.xpanel(scroll)
        h.xpanel(scroll, x, y)


Description:


    ``h.xpanel("name")``


    ``h.xpanel("name", [0-1])``
        Title of a new panel. Every
        button, menu, and value between this and a closing ``xpanel()`` command
        with no arguments (or placement args) belongs to this panel.
        If the form is used with a second argument equal to 1, then
        the panel is laid out horizontally. Otherwise the default is vertically.


    ``h.xpanel()``


    ``h.xpanel(x, y)``
        done constructing the panel. so map it to the screen with position
        optionally specified.


    ``h.xpanel(scroll)``


    ``h.xpanel(scroll, x, y)``
        as above but if the first arg is a number, then the value determines
        whether the panel will be inside a scrollbox. Scroll = 0 means a scrollbox
        will NOT be used. Scroll = 1 means the panel will be inside a scrollbox.
        Scroll = -1 is the default value and whether or not a scrollbox is used
        is determined by the number of panel items in comparison with the
        value of the panel_scroll property in the nrn.defaults file.


Skipping because NRN_ENABLE_RX3D=False

#NewObj and #Foo in existence 3 6
after del a #NewObj and #Foo in existence 0 0
ok

----------------------------------------------------------------------
Ran 15 tests in 1.700s

OK
[32;1m$ if [[ ! "${cmake_args[*]}" =~ "NRN_ENABLE_RX3D=OFF" && ! "${cmake_args[*]}" =~ "NRN_ENABLE_CORENEURON=ON" ]]; then[0;m
section_end:1685108555:step_script
[0Ksection_start:1685108555:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
[32;1mCreating cache mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-cornu/remove_mod2c-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=arm64 os[0;m=darwin pid[0;m=42858 revision[0;m=43b2dc3d version[0;m=15.4.0
./ccache: found 20875 matching files and directories[0;m
No URL provided, cache will not be uploaded to shared cache server. Cache will be stored only locally.[0;m
[32;1mCreated cache[0;m
section_end:1685108598:archive_cache
[0Ksection_start:1685108598:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
section_end:1685108599:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## spack-setup.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1685108113:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1685108113:resolve_secrets
[0Ksection_start:1685108113:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2825240513, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 126882, build ref a47fc656b14b510c2816f91cffe593818424e013, job ID 730226
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J730226_PROD_P2160_CP3_C5
Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1526452
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M    --job-name=GL_J730226_PROD_P2160_CP3_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --ntasks=1 --jobid=1526452 --cpus-per-task=6 --mem=30750M
section_end:1685108114:prepare_executor
[0Ksection_start:1685108114:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n30 via bbpv1.epfl.ch...
section_end:1685108119:prepare_script
[0Ksection_start:1685108119:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1685108120:get_sources
[0Ksection_start:1685108120:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m
[32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ cat parse_description.py[0;m
import os
import re
import requests
pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format(
                        os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'],
                        os.environ['CI_EXTERNAL_PULL_REQUEST_IID']),
                       headers={'Accept': 'application/vnd.github.v3+json'})
pr_body = pr_info.json()["body"]
# match something like NEURON_BRANCH=foo/bar
# special case for SPACK_DEPLOYMENT_SUFFIX=foo/bar
pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+\.]+)$', re.IGNORECASE)
def parse_term(m):
  ref_type = m.group(2).lower()
  is_deployment_suffix = ref_type == 'suffix' and m.group(1).lower() == 'spack_deployment'
  if ref_type not in {'branch', 'tag', 'ref'} and not is_deployment_suffix: return
  print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3))
if pr_body is not None:
  for pr_body_line in pr_body.splitlines():
    if not pr_body_line.startswith('CI_BRANCHES:'): continue
    for config_term in pr_body_line[12:].split(','):
      pat.sub(parse_term, config_term)
[32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.25.hmpt
[32;1m$ else[0;m
[32;1m$ cat input_variables.env[0;m
SPACK_BRANCH=cornu/only_nmodl
[32;1m$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m
Unsetting SPACK_BRANCH
[32;1m$ set -o allexport[0;m
[32;1m$ . input_variables.env[0;m
[32;1m$ set +o allexport[0;m
[32;1m$ unset MODULEPATH[0;m
[32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m
[32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m
[32;1m$ echo Preparing to clone Spack into ${PWD}[0;m
Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226
[32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then[0;m
[32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m
Checking out the cornu/only_nmodl of Spack...
[32;1m$ module load unstable git[0;m
[32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m
Cloning into 'spack'...
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Updating files: 100% (10327/10327)
Updating files: 100% (10327/10327), done.
[32;1m$ export SPACK_ROOT=${PWD}/spack[0;m
[32;1m$ export SPACK_RESOLVED_COMMIT=$(cd "${SPACK_ROOT}" && git rev-parse HEAD)[0;m
[32;1m$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"[0;m
[32;1m$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"[0;m
[32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m
[32;1m$ echo "SPACK_RESOLVED_COMMIT=${SPACK_RESOLVED_COMMIT}" >> spack_clone_variables.env[0;m
[32;1m$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spa

## test-neuron-nmodl-intel-legacy.txt

      
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              test-neuron-nmodl-intel-legacy.txt
            
          
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## test-neuron-nmodl-intel-shared.txt

      
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              test-neuron-nmodl-intel-shared.txt
            
          
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## test-neuron-nmodl-nvhpc-acc-legacy.txt

      
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              test-neuron-nmodl-nvhpc-acc-legacy.txt
            
          
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## test-neuron-nmodl-nvhpc-acc-shared.txt

      
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              test-neuron-nmodl-nvhpc-acc-shared.txt
            
          
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## test-neuron-nmodl-nvhpc-omp-legacy.txt

      
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              test-neuron-nmodl-nvhpc-omp-legacy.txt
            
          
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## test-neuron-nmodl-nvhpc-omp.txt

      
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              test-neuron-nmodl-nvhpc-omp.txt
            
          
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	[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
	[0K on BB5 map runner pnPo3yJy[0;m
	section_start:1685108113:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m
	section_end:1685108113:resolve_secrets [0Ksection_start:1685108113:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
	[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
	BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
	TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2825240513, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
	Runner ID 29, project root hpc, project name nrn
	Pipeline ID 126882, build ref a47fc656b14b510c2816f91cffe593818424e013, job ID 730226
	Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag
	A slurm job will be created with name GL_J730226_PROD_P2160_CP3_C5
	Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
	Not executing the chown -R
	sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
	sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl\|clx]
	Submitted batch job 1526452
	job state: R
	sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J730226_PROD_P2160_CP3_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --time=1:00:00 --wrap="sleep infinity"
	srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P126882 --ntasks=1 --jobid=1526452 --cpus-per-task=6 --mem=30750M
	section_end:1685108114:prepare_executor [0Ksection_start:1685108114:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m
	Using git from spack modules
	Running on r1i7n30 via bbpv1.epfl.ch...
	section_end:1685108119:prepare_script [0Ksection_start:1685108119:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m
	Using git from spack modules
	[32;1mSkipping Git repository setup[0;m
	[32;1mSkipping Git checkout[0;m
	[32;1mSkipping Git submodules setup[0;m
	section_end:1685108120:get_sources [0Ksection_start:1685108120:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
	[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
	Using git from spack modules
	[32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m
	[32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m
	[32;1m$ cat parse_description.py[0;m
	import os
	import re
	import requests
	pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format(
	os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'],
	os.environ['CI_EXTERNAL_PULL_REQUEST_IID']),
	headers={'Accept': 'application/vnd.github.v3+json'})
	pr_body = pr_info.json()["body"]
	# match something like NEURON_BRANCH=foo/bar
	# special case for SPACK_DEPLOYMENT_SUFFIX=foo/bar
	pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+\.]+)$', re.IGNORECASE)
	def parse_term(m):
	ref_type = m.group(2).lower()
	is_deployment_suffix = ref_type == 'suffix' and m.group(1).lower() == 'spack_deployment'
	if ref_type not in {'branch', 'tag', 'ref'} and not is_deployment_suffix: return
	print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3))
	if pr_body is not None:
	for pr_body_line in pr_body.splitlines():
	if not pr_body_line.startswith('CI_BRANCHES:'): continue
	for config_term in pr_body_line[12:].split(','):
	pat.sub(parse_term, config_term)
	[32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m
	Autoloading python/3.10.8
	Autoloading intel-oneapi-mkl/2021.4.0
	Autoloading hpe-mpi/2.25.hmpt
	[32;1m$ else[0;m
	[32;1m$ cat input_variables.env[0;m
	SPACK_BRANCH=cornu/only_nmodl
	[32;1m$ for var_to_unset in $(sed 's/^\(.\?\)_\(BRANCH\\|COMMIT\\|TAG\)=.$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m
	Unsetting SPACK_BRANCH
	[32;1m$ set -o allexport[0;m
	[32;1m$ . input_variables.env[0;m
	[32;1m$ set +o allexport[0;m
	[32;1m$ unset MODULEPATH[0;m
	[32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m
	[32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m
	[32;1m$ echo Preparing to clone Spack into ${PWD}[0;m
	Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P126882/J730226
	[32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" \|\| -n "${SPACK_TAG}" ) ]]; then[0;m
	[32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m
	Checking out the cornu/only_nmodl of Spack...
	[32;1m$ module load unstable git[0;m
	[32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m
	Cloning into 'spack'...
	Updating files: 3% (344/10327) Updating files: 4% (414/10327) Updating files: 5% (517/10327) Updating files: 6% (620/10327) Updating files: 7% (723/10327) Updating files: 7% (738/10327) Updating files: 8% (827/10327) Updating files: 9% (930/10327) Updating files: 10% (1033/10327) Updating files: 11% (1136/10327) Updating files: 11% (1150/10327) Updating files: 12% (1240/10327) Updating files: 13% (1343/10327) Updating files: 14% (1446/10327) Updating files: 14% (1467/10327) Updating files: 15% (1550/10327) Updating files: 16% (1653/10327) Updating files: 17% (1756/10327) Updating files: 17% (1841/10327) Updating files: 18% (1859/10327) Updating files: 19% (1963/10327) Updating files: 19% (2053/10327) Updating files: 20% (2066/10327) Updating files: 21% (2169/10327) Updating files: 22% (2272/10327) Updating files: 22% (2301/10327) Updating files: 23% (2376/10327) Updating files: 24% (2479/10327) Updating files: 24% (2512/10327) Updating files: 25% (2582/10327) Updating files: 26% (2686/10327) Updating files: 26% (2713/10327) Updating files: 27% (2789/10327) Updating files: 28% (2892/10327) Updating files: 28% (2919/10327) Updating files: 29% (2995/10327) Updating files: 30% (3099/10327) Updating files: 30% (3132/10327) Updating files: 31% (3202/10327) Updating files: 32% (3305/10327) Updating files: 32% (3349/10327) Updating files: 33% (3408/10327) Updating files: 34% (3512/10327) Updating files: 34% (3578/10327) Updating files: 35% (3615/10327) Updating files: 36% (3718/10327) Updating files: 36% (3808/10327) Updating files: 37% (3821/10327) Updating files: 38% (3925/10327) Updating files: 39% (4028/10327) Updating files: 39% (4029/10327) Updating files: 40% (4131/10327) Updating files: 40% (4218/10327) Updating files: 41% (4235/10327) Updating files: 42% (4338/10327) Updating files: 43% (4441/10327) Updating files: 43% (4446/10327) Updating files: 44% (4544/10327) Updating files: 45% (4648/10327) Updating files: 45% (4665/10327) Updating files: 46% (4751/10327) Updating files: 47% (4854/10327) Updating files: 47% (4902/10327) Updating files: 48% (4957/10327) Updating files: 49% (5061/10327) Updating files: 49% (5153/10327) Updating files: 50% (5164/10327) Updating files: 51% (5267/10327) Updating files: 51% (5352/10327) Updating files: 52% (5371/10327) Updating files: 53% (5474/10327) Updating files: 53% (5547/10327) Updating files: 54% (5577/10327) Updating files: 55% (5680/10327) Updating files: 55% (5768/10327) Updating files: 56% (5784/10327) Updating files: 57% (5887/10327) Updating files: 57% (5963/10327) Updating files: 58% (5990/10327) Updating files: 59% (6093/10327) Updating files: 59% (6162/10327) Updating files: 60% (6197/10327) Updating files: 61% (6300/10327) Updating files: 61% (6363/10327) Updating files: 62% (6403/10327) Updating files: 63% (6507/10327) Updating files: 63% (6566/10327) Updating files: 64% (6610/10327) Updating files: 65% (6713/10327) Updating files: 65% (6763/10327) Updating files: 66% (6816/10327) Updating files: 67% (6920/10327) Updating files: 67% (6964/10327) Updating files: 68% (7023/10327) Updating files: 69% (7126/10327) Updating files: 69% (7157/10327) Updating files: 70% (7229/10327) Updating files: 71% (7333/10327) Updating files: 71% (7349/10327) Updating files: 72% (7436/10327) Updating files: 73% (7539/10327) Updating files: 73% (7548/10327) Updating files: 74% (7642/10327) Updating files: 75% (7746/10327) Updating files: 75% (7762/10327) Updating files: 76% (7849/10327) Updating files: 77% (7952/10327) Updating files: 77% (7994/10327) Updating files: 78% (8056/10327) Updating files: 79% (8159/10327) Updating files: 79% (8201/10327) Updating files: 80% (8262/10327) Updating files: 81% (8365/10327) Updating files: 81% (8405/10327) Updating files: 82% (8469/10327) Updating files: 83% (8572/10327) Updating files: 83% (8608/10327) Updating files: 84% (8675/10327) Updating files: 85% (8778/10327) Updating files: 85% (8817/10327) Updating files: 86% (8882/10327) Updating files: 87% (8985/10327) Updating files: 87% (9011/10327) Updating files: 88% (9088/10327) Updating files: 89% (9192/10327) Updating files: 89% (9252/10327) Updating files: 90% (9295/10327) Updating files: 91% (9398/10327) Updating files: 91% (9478/10327) Updating files: 92% (9501/10327) Updating files: 93% (9605/10327) Updating files: 93% (9700/10327) Updating files: 94% (9708/10327) Updating files: 95% (9811/10327) Updating files: 96% (9914/10327) Updating files: 96% (9931/10327) Updating files: 97% (10018/10327) Updating files: 98% (10121/10327) Updating files: 98% (10158/10327) Updating files: 99% (10224/10327) Updating files: 100% (10327/10327) Updating files: 100% (10327/10327), done.
	[32;1m$ export SPACK_ROOT=${PWD}/spack[0;m
	[32;1m$ export SPACK_RESOLVED_COMMIT=$(cd "${SPACK_ROOT}" && git rev-parse HEAD)[0;m
	[32;1m$ export SPACK_USER_CACHE_PATH="${CI_BUILDS_DIR}"[0;m
	[32;1m$ export SPACK_SYSTEM_CONFIG_PATH="/gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config"[0;m
	[32;1m$ echo "SPACK_ROOT=${SPACK_ROOT}" >> spack_clone_variables.env[0;m
	[32;1m$ echo "SPACK_RESOLVED_COMMIT=${SPACK_RESOLVED_COMMIT}" >> spack_clone_variables.env[0;m
	[32;1m$ echo "SPACK_USER_CACHE_PATH=${SPACK_USER_CACHE_PATH}" >> spa