bbpbuildbot/GitLab logs for neuronsimulator-nrn#2650 Secret

## build-neuron-nmodl-intel-legacy.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1706637583:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1706637583:resolve_secrets
[0Ksection_start:1706637583:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3633761810, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 189495, build ref , job ID 1139121
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1139121_PROD_P2160_CP0_C2
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1994140
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J1139121_PROD_P2160_CP0_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495 --ntasks=2 --jobid=1994140 --cpus-per-task=8 --mem=76G
section_end:1706637584:prepare_executor
[0Ksection_start:1706637584:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i4n30 via bbpv1.epfl.ch...
section_end:1706637589:prepare_script
[0Ksection_start:1706637589:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1706637590:get_sources
[0Ksection_start:1706637590:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:intel:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=4883 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1706637596:restore_cache
[0Ksection_start:1706637596:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1139120)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=5539 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1139120 responseStatus[0;m=200 OK token[0;m=64_rkmKN
section_end:1706637597:download_artifacts
[0Ksection_start:1706637597:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139121/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139121/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139121/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139121/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139121/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139121/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495/J1139121_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/v6ovmhtqx3wstiiamn5f73nzoourfjwu
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1994140/ccache
  Primary config:   /nvme/bbpcihpcproj12/1994140/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Tue Jan 30 19:00:01 2024
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.46 / 0.51 (90.23 %)
  Files:            10025
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   k5mkwly  neuron@develop%oneapi@2022.2.1~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  tfmovis      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  6vmhmdx      ^hpe-mpi@2.27.p1.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
 -   qzluzg3      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  robnu5b          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  xfi3vdr          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  v6ovmht      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  7v6k26x          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  t7yyhxk          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  ee7ugzv          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  4roal44      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  uucrzmi      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2zoh6fg          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a53pqvu          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ua7apk4      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  oumzlg3      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  yqakowj          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495, but it is owned by 0
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-hedfpr (external boost-1.80.0-tfmovis2fgojotxjxkbmubnpkxslqlqz)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.27.p1.hmpt-giwtwf (external hpe-mpi-2.27.p1.hmpt-6vmhmdx2nsibj6mzxfb3sxl32cs7c3fc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-robnu5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
==> Installing libsonata-report-develop-qzluzg3stdzoixmjm4zmv4wcj6xehme2
==> No binary for libsonata-report-develop-qzluzg3stdzoixmjm4zmv4wcj6xehme2 found: installing from source
==> No patches needed for libsonata-report
==> libsonata-report: Executing phase: 'cmake'
==> libsonata-report: Executing phase: 'build'
==> libsonata-report: Executing phase: 'install'
==> libsonata-report: Successfully installed libsonata-report-develop-qzluzg3stdzoixmjm4zmv4wcj6xehme2
  Fetch: 2.30s.  Build: 5.14s.  Total: 7.44s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_gcc-12.2.0-skylake/libsonata-report-develop-qzluzg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-4roal4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_gcc-12.2.0-skylake/nmodl-develop-v6ovmh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-ua7apk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
==> Installing neuron-develop-k5mkwlyebxipydfjily3fe5oujyjdwld
==> No binary for neuron-develop-k5mkwlyebxipydfjily3fe5oujyjdwld found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-k5mkwlyebxipydfjily3fe5oujyjdwld
  Fetch: 24.11s.  Build: 39m 52.71s.  Total: 40m 16.81s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_oneapi-2022.2.1-skylake/neuron-develop-k5mkwl
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be k5mkwlyebxipydfjily3fe5oujyjdwld
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1994140/ccache
  Primary config:           /nvme/bbpcihpcproj12/1994140/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Tue Jan 30 19:45:04 2024
  Hits:                      559 /  887 (63.02 %)
    Direct:                  182 /  891 (20.43 %)
    Preprocessed:            377 /  708 (53.25 %)
  Misses:                    328
    Direct:                  709
    Preprocessed:            331
  Uncacheable:              1299
Primary storage:
  Hits:                     1177 / 1781 (66.09 %)
  Misses:                    604
  Cache size (GB):          0.45 / 0.51 (87.19 %)
  Files:                    8965
  Cleanups:                   10
Uncacheable:
  Autoconf compile/link:       5
  Called for linking:       1271
  Called for preprocessing:    1
  Compilation failed:          3
  No input file:              18
  Preprocessing failed:        1
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.27.p1.hmpt
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1706640307:step_script
[0Ksection_start:1706640307:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:intel:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=52467 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1706640327:archive_cache
[0Ksection_start:1706640327:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=52668 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1139121 responseStatus[0;m=201 Created token[0;m=64_rkmKN
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=52708 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1139121 responseStatus[0;m=201 Created token[0;m=64_rkmKN
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=52747 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1139121 responseStatus[0;m=201 Created token[0;m=64_rkmKN
section_end:1706640329:upload_artifacts_on_success
[0Ksection_start:1706640329:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1706640330:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-intel-shared.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1706637584:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1706637584:resolve_secrets
[0Ksection_start:1706637584:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor821367738, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 189495, build ref , job ID 1139122
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1139122_PROD_P2160_CP1_C4
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1994141
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J1139122_PROD_P2160_CP1_C4 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495 --ntasks=2 --jobid=1994141 --cpus-per-task=8 --mem=76G
section_end:1706637587:prepare_executor
[0Ksection_start:1706637587:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i4n30 via bbpv1.epfl.ch...
section_end:1706637589:prepare_script
[0Ksection_start:1706637589:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1706637590:get_sources
[0Ksection_start:1706637590:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:intel:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=4761 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1706637596:restore_cache
[0Ksection_start:1706637596:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1139120)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=5454 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1139120 responseStatus[0;m=200 OK token[0;m=64_2Rbe_
section_end:1706637597:download_artifacts
[0Ksection_start:1706637597:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139122/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139122/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139122/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139122/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139122/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139122/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495/J1139122_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/v6ovmhtqx3wstiiamn5f73nzoourfjwu
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1994141/ccache
  Primary config:   /nvme/bbpcihpcproj12/1994141/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Tue Jan 30 19:00:01 2024
  Hits:                0 /    0
    Direct:            0 /    0
    Preprocessed:      0 /    0
  Misses:              0
    Direct:            0
    Preprocessed:      0
Primary storage:
  Hits:                0 /    0
  Misses:              0
  Cache size (GB):  0.46 / 0.51 (89.86 %)
  Files:            9549
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d+shared+sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   alda6yb  neuron@develop%oneapi@2022.2.1~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  tfmovis      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  6vmhmdx      ^hpe-mpi@2.27.p1.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
 -   qzluzg3      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  robnu5b          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  xfi3vdr          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  v6ovmht      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  7v6k26x          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  t7yyhxk          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  ee7ugzv          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  4roal44      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  uucrzmi      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2zoh6fg          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a53pqvu          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ua7apk4      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  oumzlg3      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  yqakowj          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-hedfpr (external boost-1.80.0-tfmovis2fgojotxjxkbmubnpkxslqlqz)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.27.p1.hmpt-giwtwf (external hpe-mpi-2.27.p1.hmpt-6vmhmdx2nsibj6mzxfb3sxl32cs7c3fc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-robnu5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-4roal4
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_gcc-12.2.0-skylake/libsonata-report-develop-qzluzg
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_gcc-12.2.0-skylake/nmodl-develop-v6ovmh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-ua7apk
==> Installing neuron-develop-alda6ybpmny4mtgj33txbm5pcdkbsbvs
==> No binary for neuron-develop-alda6ybpmny4mtgj33txbm5pcdkbsbvs found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-alda6ybpmny4mtgj33txbm5pcdkbsbvs
  Fetch: 16.66s.  Build: 37m 48.64s.  Total: 38m 5.30s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_oneapi-2022.2.1-skylake/neuron-develop-alda6y
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be alda6ybpmny4mtgj33txbm5pcdkbsbvs
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1994141/ccache
  Primary config:           /nvme/bbpcihpcproj12/1994141/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Tue Jan 30 19:43:01 2024
  Hits:                      537 /  865 (62.08 %)
    Direct:                  159 /  869 (18.30 %)
    Preprocessed:            378 /  709 (53.31 %)
  Misses:                    328
    Direct:                  710
    Preprocessed:            331
  Uncacheable:              1295
Primary storage:
  Hits:                     1132 / 1737 (65.17 %)
  Misses:                    605
  Cache size (GB):          0.45 / 0.51 (87.94 %)
  Files:                    9049
  Cleanups:                    9
Uncacheable:
  Autoconf compile/link:       5
  Called for linking:       1277
  Called for preprocessing:    1
  Compilation failed:          3
  No input file:               8
  Preprocessing failed:        1
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.27.p1.hmpt
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1706640184:step_script
[0Ksection_start:1706640184:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:intel:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=51422 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Ashared-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1706640205:archive_cache
[0Ksection_start:1706640205:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=51599 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1139122 responseStatus[0;m=201 Created token[0;m=64_2Rbe_
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=51638 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1139122 responseStatus[0;m=201 Created token[0;m=64_2Rbe_
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=51679 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1139122 responseStatus[0;m=201 Created token[0;m=64_2Rbe_
section_end:1706640207:upload_artifacts_on_success
[0Ksection_start:1706640207:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1706640208:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-acc-legacy.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1706637584:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1706637584:resolve_secrets
[0Ksection_start:1706637584:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3593632743, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 189495, build ref , job ID 1139123
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1139123_PROD_P2160_CP2_C5
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1994142
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J1139123_PROD_P2160_CP2_C5 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495 --ntasks=2 --jobid=1994142 --cpus-per-task=8 --mem=76G
section_end:1706637588:prepare_executor
[0Ksection_start:1706637588:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i4n30 via bbpv1.epfl.ch...
section_end:1706637589:prepare_script
[0Ksection_start:1706637589:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1706637590:get_sources
[0Ksection_start:1706637590:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=4921 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1706637596:restore_cache
[0Ksection_start:1706637596:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1139120)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=5383 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1139120 responseStatus[0;m=200 OK token[0;m=64_gxzFb
section_end:1706637597:download_artifacts
[0Ksection_start:1706637597:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139123/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139123/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139123/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139123/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139123/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139123/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495/J1139123_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/v6ovmhtqx3wstiiamn5f73nzoourfjwu
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1994142/ccache
  Primary config:   /nvme/bbpcihpcproj12/1994142/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Tue Jan 30 19:00:01 2024
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.46 / 0.51 (90.15 %)
  Files:            13901
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   2b5os6h  neuron@develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  tfmovis      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  ajstvdu      ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  6vmhmdx      ^hpe-mpi@2.27.p1.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
 -   qzluzg3      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  robnu5b          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  xfi3vdr          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  v6ovmht      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  7v6k26x          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  t7yyhxk          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  ee7ugzv          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  4roal44      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  uucrzmi      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2zoh6fg          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a53pqvu          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ua7apk4      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  oumzlg3      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  yqakowj          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-hedfpr (external boost-1.80.0-tfmovis2fgojotxjxkbmubnpkxslqlqz)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.27.p1.hmpt-giwtwf (external hpe-mpi-2.27.p1.hmpt-6vmhmdx2nsibj6mzxfb3sxl32cs7c3fc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-robnu5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-4roal4
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_gcc-12.2.0-skylake/libsonata-report-develop-qzluzg
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_gcc-12.2.0-skylake/nmodl-develop-v6ovmh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-ua7apk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
==> Installing neuron-develop-2b5os6h7ky5w66inncgb3k6ponmkc663
==> No binary for neuron-develop-2b5os6h7ky5w66inncgb3k6ponmkc663 found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-2b5os6h7ky5w66inncgb3k6ponmkc663
  Fetch: 20.98s.  Build: 1h 12m 19.12s.  Total: 1h 12m 40.09s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_nvhpc-23.1-skylake/neuron-develop-2b5os6
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be 2b5os6h7ky5w66inncgb3k6ponmkc663
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1994142/ccache
  Primary config:           /nvme/bbpcihpcproj12/1994142/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Tue Jan 30 20:16:40 2024
  Hits:                       537 /  913 (58.82 %)
    Direct:                   160 /  868 (18.43 %)
    Preprocessed:             377 /  706 (53.40 %)
  Misses:                     376
    Direct:                   708
    Preprocessed:             329
  Uncacheable:                115
Primary storage:
  Hits:                      1131 / 1734 (65.22 %)
  Misses:                     603
  Cache size (GB):           0.46 / 0.51 (90.01 %)
  Files:                    12971
  Cleanups:                     6
Uncacheable:
  Autoconf compile/link:        5
  Called for linking:          95
  Called for preprocessing:     2
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         2
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.27.p1.hmpt
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1706642201:step_script
[0Ksection_start:1706642201:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=78325 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Alegacy-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1706642221:archive_cache
[0Ksection_start:1706642221:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=78552 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1139123 responseStatus[0;m=201 Created token[0;m=64_gxzFb
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=78589 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1139123 responseStatus[0;m=201 Created token[0;m=64_gxzFb
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=78627 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1139123 responseStatus[0;m=201 Created token[0;m=64_gxzFb
section_end:1706642222:upload_artifacts_on_success
[0Ksection_start:1706642222:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1706642223:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-acc-shared.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1706637585:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1706637585:resolve_secrets
[0Ksection_start:1706637585:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2563501531, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 189495, build ref , job ID 1139124
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1139124_PROD_P2160_CP3_C6
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1994143
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J1139124_PROD_P2160_CP3_C6 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495 --ntasks=2 --jobid=1994143 --cpus-per-task=8 --mem=76G
section_end:1706637587:prepare_executor
[0Ksection_start:1706637587:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i4n30 via bbpv1.epfl.ch...
section_end:1706637593:prepare_script
[0Ksection_start:1706637593:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1706637594:get_sources
[0Ksection_start:1706637594:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=5234 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1706637600:restore_cache
[0Ksection_start:1706637600:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1139120)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=7157 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1139120 responseStatus[0;m=200 OK token[0;m=64_fMeTr
section_end:1706637601:download_artifacts
[0Ksection_start:1706637601:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139124/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139124/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139124/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139124/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139124/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139124/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495/J1139124_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy  ^/v6ovmhtqx3wstiiamn5f73nzoourfjwu
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1994143/ccache
  Primary config:   /nvme/bbpcihpcproj12/1994143/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Tue Jan 30 19:00:05 2024
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.47 / 0.51 (92.10 %)
  Files:            15474
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d+shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   xilxlom  neuron@develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d+shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  tfmovis      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  ajstvdu      ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  6vmhmdx      ^hpe-mpi@2.27.p1.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
 -   qzluzg3      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  robnu5b          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  xfi3vdr          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  v6ovmht      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  7v6k26x          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  t7yyhxk          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  ee7ugzv          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  4roal44      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  uucrzmi      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2zoh6fg          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a53pqvu          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ua7apk4      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  oumzlg3      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  yqakowj          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-hedfpr (external boost-1.80.0-tfmovis2fgojotxjxkbmubnpkxslqlqz)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.27.p1.hmpt-giwtwf (external hpe-mpi-2.27.p1.hmpt-6vmhmdx2nsibj6mzxfb3sxl32cs7c3fc)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-robnu5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-4roal4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_gcc-12.2.0-skylake/libsonata-report-develop-qzluzg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_gcc-12.2.0-skylake/nmodl-develop-v6ovmh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-ua7apk
==> Installing neuron-develop-xilxlomjyjmfj4ocdmcfw2eepyi73snh
==> No binary for neuron-develop-xilxlomjyjmfj4ocdmcfw2eepyi73snh found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-xilxlomjyjmfj4ocdmcfw2eepyi73snh
  Fetch: 18.76s.  Build: 1h 12m 21.00s.  Total: 1h 12m 39.77s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_nvhpc-23.1-skylake/neuron-develop-xilxlo
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be xilxlomjyjmfj4ocdmcfw2eepyi73snh
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1994143/ccache
  Primary config:           /nvme/bbpcihpcproj12/1994143/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Tue Jan 30 20:16:41 2024
  Hits:                       537 /  981 (54.74 %)
    Direct:                   160 /  868 (18.43 %)
    Preprocessed:             377 /  706 (53.40 %)
  Misses:                     444
    Direct:                   708
    Preprocessed:             329
  Uncacheable:                124
Primary storage:
  Hits:                      1133 / 1734 (65.34 %)
  Misses:                     601
  Cache size (GB):           0.46 / 0.51 (90.52 %)
  Files:                    13908
  Cleanups:                     7
Uncacheable:
  Autoconf compile/link:        5
  Called for linking:         104
  Called for preprocessing:     2
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         2
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.27.p1.hmpt
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1706642203:step_script
[0Ksection_start:1706642203:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:acc:shared-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=78430 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Ashared-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1706642223:archive_cache
[0Ksection_start:1706642223:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=78977 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1139124 responseStatus[0;m=201 Created token[0;m=64_fMeTr
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=79005 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1139124 responseStatus[0;m=201 Created token[0;m=64_fMeTr
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=79045 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1139124 responseStatus[0;m=201 Created token[0;m=64_fMeTr
section_end:1706642225:upload_artifacts_on_success
[0Ksection_start:1706642225:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1706642226:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-omp-legacy.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1706637585:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1706637585:resolve_secrets
[0Ksection_start:1706637585:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor3702686112, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 189495, build ref , job ID 1139125
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1139125_PROD_P2160_CP4_C7
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1994144
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J1139125_PROD_P2160_CP4_C7 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495 --ntasks=2 --jobid=1994144 --cpus-per-task=8 --mem=76G
section_end:1706637588:prepare_executor
[0Ksection_start:1706637588:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n21 via bbpv1.epfl.ch...
section_end:1706637593:prepare_script
[0Ksection_start:1706637593:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1706637594:get_sources
[0Ksection_start:1706637594:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=470 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1706637600:restore_cache
[0Ksection_start:1706637600:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1139120)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=694 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1139120 responseStatus[0;m=200 OK token[0;m=64_jaMYX
section_end:1706637601:download_artifacts
[0Ksection_start:1706637601:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139125/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139125/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139125/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139125/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139125/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139125/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495/J1139125_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70  ^/v6ovmhtqx3wstiiamn5f73nzoourfjwu
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1994144/ccache
  Primary config:   /nvme/bbpcihpcproj12/1994144/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Tue Jan 30 19:00:05 2024
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.46 / 0.51 (89.16 %)
  Files:            13582
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^caliper+cuda cuda_arch=70
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   eiruxtf  neuron@develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  tfmovis      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  5nl5jk4      ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake
[^]  xp4icmj          ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  7yt5klx          ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake
[^]  zttduab              ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  ja6blio          ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^]  3gsobub          ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  ajstvdu      ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  6vmhmdx      ^hpe-mpi@2.27.p1.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
 -   qzluzg3      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  robnu5b          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  xfi3vdr          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  v6ovmht      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  7v6k26x          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  t7yyhxk          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  ee7ugzv          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  4roal44      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  uucrzmi      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2zoh6fg          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a53pqvu          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ua7apk4      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  oumzlg3      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  yqakowj          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-hedfpr (external boost-1.80.0-tfmovis2fgojotxjxkbmubnpkxslqlqz)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.27.p1.hmpt-giwtwf (external hpe-mpi-2.27.p1.hmpt-6vmhmdx2nsibj6mzxfb3sxl32cs7c3fc)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
[+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-xp4icm
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-robnu5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_gcc-12.2.0-skylake/libsonata-report-develop-qzluzg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-4roal4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-5nl5jk
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_gcc-12.2.0-skylake/nmodl-develop-v6ovmh
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-ua7apk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
==> Installing neuron-develop-eiruxtfkgmv4r7akm6th5ipzwfpt46jx
==> No binary for neuron-develop-eiruxtfkgmv4r7akm6th5ipzwfpt46jx found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-eiruxtfkgmv4r7akm6th5ipzwfpt46jx
  Fetch: 19.64s.  Build: 57m 37.33s.  Total: 57m 56.97s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_nvhpc-23.1-skylake/neuron-develop-eiruxt
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be eiruxtfkgmv4r7akm6th5ipzwfpt46jx
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1994144/ccache
  Primary config:           /nvme/bbpcihpcproj12/1994144/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Tue Jan 30 20:01:57 2024
  Hits:                       537 /  923 (58.18 %)
    Direct:                   160 /  870 (18.39 %)
    Preprocessed:             377 /  708 (53.25 %)
  Misses:                     386
    Direct:                   710
    Preprocessed:             331
  Uncacheable:                117
Primary storage:
  Hits:                      1133 / 1738 (65.19 %)
  Misses:                     605
  Cache size (GB):           0.47 / 0.51 (91.87 %)
  Files:                    13370
  Cleanups:                     4
Uncacheable:
  Autoconf compile/link:        5
  Called for linking:          97
  Called for preprocessing:     2
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         2
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.27.p1.hmpt
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1706641318:step_script
[0Ksection_start:1706641318:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=41767 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1706641339:archive_cache
[0Ksection_start:1706641339:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=41925 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1139125 responseStatus[0;m=201 Created token[0;m=64_jaMYX
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=41962 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1139125 responseStatus[0;m=201 Created token[0;m=64_jaMYX
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=42003 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1139125 responseStatus[0;m=201 Created token[0;m=64_jaMYX
section_end:1706641340:upload_artifacts_on_success
[0Ksection_start:1706641340:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1706641341:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-neuron-nmodl-nvhpc-omp.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1706637586:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1706637586:resolve_secrets
[0Ksection_start:1706637586:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2612460599, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 189495, build ref , job ID 1139126
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1139126_PROD_P2160_CP5_C8
Job parameters: memory=76G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1994145
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J1139126_PROD_P2160_CP5_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495 --time=2:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495 --ntasks=2 --jobid=1994145 --cpus-per-task=8 --mem=76G
section_end:1706637587:prepare_executor
[0Ksection_start:1706637587:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i7n21 via bbpv1.epfl.ch...
section_end:1706637593:prepare_script
[0Ksection_start:1706637593:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1706637594:get_sources
[0Ksection_start:1706637594:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=512 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1706637600:restore_cache
[0Ksection_start:1706637600:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for build:nmodl (1139120)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=757 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1139120 responseStatus[0;m=200 OK token[0;m=64_snrGt
section_end:1706637601:download_artifacts
[0Ksection_start:1706637601:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139126/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139126/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139126/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139126/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139126/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139126/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495/J1139126_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70  ^/v6ovmhtqx3wstiiamn5f73nzoourfjwu
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1994145/ccache
  Primary config:   /nvme/bbpcihpcproj12/1994145/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Tue Jan 30 19:00:05 2024
  Hits:                 0 /    0
    Direct:             0 /    0
    Preprocessed:       0 /    0
  Misses:               0
    Direct:             0
    Preprocessed:       0
Primary storage:
  Hits:                 0 /    0
  Misses:               0
  Cache size (GB):   0.46 / 0.51 (90.09 %)
  Files:            12484
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy
 -       ^caliper+cuda cuda_arch=70
[+]      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]          ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]                  ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]              ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]          ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]              ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]          ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

Concretized
--------------------------------
 -   6iod3le  neuron@develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  tfmovis      ^boost@1.80.0%gcc@12.2.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake
[^]  5nl5jk4      ^caliper@2.8.0%gcc@12.2.0+adiak+cuda~fortran+gotcha~ipo+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow build_system=cmake build_type=RelWithDebInfo cuda_arch=70 arch=linux-rhel7-skylake
[^]  xp4icmj          ^adiak@0.2.2%gcc@12.2.0~ipo+mpi+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  7yt5klx          ^elfutils@0.188%gcc@12.2.0~bzip2~debuginfod+nls~xz~zstd build_system=autotools arch=linux-rhel7-skylake
[^]  zttduab              ^m4@1.4.16%gcc@12.2.0+sigsegv build_system=autotools arch=linux-rhel7-skylake
[^]  ogdpwov              ^zlib@1.2.13%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel7-skylake
[^]  ja6blio          ^libunwind@1.6.2%gcc@12.2.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake
[^]  3gsobub          ^papi@6.0.0.1%gcc@12.2.0~cuda+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  ajstvdu      ^cuda@12.0.0%gcc@12.2.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  xztjuru      ^gettext@0.21.1%gcc@12.2.0+bzip2+curses+git~libunistring+libxml2+tar+xz build_system=autotools arch=linux-rhel7-skylake
[^]  ms32l57          ^bzip2@1.0.8%gcc@12.2.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake
[^]  455jiaa          ^libiconv@1.16%gcc@12.2.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  sktzpiy          ^libxml2@2.10.1%gcc@12.2.0~python build_system=autotools arch=linux-rhel7-skylake
[^]  q4mt2xu              ^pkgconf@1.8.0%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  3mknztm          ^tar@1.28%gcc@12.2.0 build_system=autotools patches=08921fc,125cd61,5c314db,d428578 zip=pigz arch=linux-rhel7-skylake
[^]  qy7gxuh          ^xz@5.2.7%gcc@12.2.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake
[^]  6vmhmdx      ^hpe-mpi@2.27.p1.hmpt%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
 -   qzluzg3      ^libsonata-report@develop%gcc@12.2.0~ipo+mpi build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  robnu5b          ^hdf5@1.14.0%gcc@12.2.0+cxx~fortran+hl~ipo~java~map+mpi~page_buffer_patch+shared~szip~threadsafe+tools api=default build_system=cmake build_type=RelWithDebInfo patches=0b5dd6f arch=linux-rhel7-skylake
[^]  xfi3vdr          ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  kjtivgw      ^ncurses@6.3%gcc@12.2.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[+]  v6ovmht      ^nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  7v6k26x          ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to          ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  t7yyhxk          ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  ee7ugzv          ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck          ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f              ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  pi3gdaj          ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  d4xzk5t          ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub              ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  4roal44      ^py-mpi4py@3.1.4%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ly6cmfc      ^py-numpy@1.22.4%gcc@12.2.0+blas+lapack build_system=python_pip patches=873745d arch=linux-rhel7-skylake
[^]  fnkrysr          ^intel-oneapi-mkl@2021.4.0%gcc@12.2.0~cluster~ilp64+shared build_system=generic arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h      ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki          ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb      ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  uucrzmi      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2zoh6fg          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a53pqvu          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ua7apk4      ^py-pytest-cov@3.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6pjz7mt          ^py-coverage@6.4.4%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  oumzlg3      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  yqakowj          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  ht7d3fj      ^readline@8.1.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/boost-1.80.0-hedfpr (external boost-1.80.0-tfmovis2fgojotxjxkbmubnpkxslqlqz)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/hpe-mpi-2.27.p1.hmpt-giwtwf (external hpe-mpi-2.27.p1.hmpt-6vmhmdx2nsibj6mzxfb3sxl32cs7c3fc)
==> cuda@12.0.0 : has external module in ['cuda/12.0.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cuda-12.0.0-4amlih (external cuda-12.0.0-ajstvduqrwv4fljodkrtycsn5atyd44t)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bzip2-1.0.8-e7n5ge (external bzip2-1.0.8-ms32l57ytvbcsrj3zhe3hban73lgynpm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libiconv-1.16-455jia
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/pkgconf-1.8.0-q4mt2x
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/xz-5.2.7-qy7gxu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/zlib-1.2.13-7d6hpk (external zlib-1.2.13-ogdpwovxjavmphqzlyrjfggoexpa4di2)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ncurses-6.3-mslafi (external ncurses-6.3-kjtivgwlm2tlta25c64eo7gxvxlxj7td)
[+] /usr (external tar-1.28-3mknztmfmrpum3mzcmd2rk7vvf76cskj)
[+] /usr (external m4-1.4.16-zttduab7wfircnz7epbqj5ghrnfugdox)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libunwind-1.6.2-ja6bli
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/papi-6.0.0.1-3gsobu
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
==> intel-oneapi-mkl@2021.4.0 : has external module in ['intel-oneapi-mkl/2021.4.0']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/intel-oneapi-mkl-2021.4.0-q7vl7m (external intel-oneapi-mkl-2021.4.0-fnkrysrw7agok7ie2ffw2psaxrrcygjm)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/readline-8.1.2-kapavr (external readline-8.1.2-ht7d3fjkgkkonyn5cozpooil4pjqhu5n)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/adiak-0.2.2-xp4icm
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/hdf5-1.14.0-robnu5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libxml2-2.10.1-sktzpi
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/gettext-0.21.1-xztjur
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_gcc-12.2.0-skylake/libsonata-report-develop-qzluzg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/elfutils-0.188-7yt5kl
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpi4py-3.1.4-4roal4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-coverage-6.4.4-6pjz7m
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/caliper-2.8.0-5nl5jk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-numpy-1.22.4-ly6cmf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-cov-3.0.0-ua7apk
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_gcc-12.2.0-skylake/nmodl-develop-v6ovmh
==> Installing neuron-develop-6iod3levriy6z4puvaev3lby6he52rvd
==> No binary for neuron-develop-6iod3levriy6z4puvaev3lby6he52rvd found: installing from source
==> No patches needed for neuron
==> neuron: Executing phase: 'cmake'
==> neuron: Executing phase: 'build'
==> neuron: Executing phase: 'install'
==> neuron: Successfully installed neuron-develop-6iod3levriy6z4puvaev3lby6he52rvd
  Fetch: 26.33s.  Build: 57m 57.97s.  Total: 58m 24.29s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_nvhpc-23.1-skylake/neuron-develop-6iod3l
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be 6iod3levriy6z4puvaev3lby6he52rvd
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:          /nvme/bbpcihpcproj12/1994145/ccache
  Primary config:           /nvme/bbpcihpcproj12/1994145/ccache/ccache.conf
  Secondary config:         /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:            Tue Jan 30 20:02:21 2024
  Hits:                       538 /  923 (58.29 %)
    Direct:                   160 /  870 (18.39 %)
    Preprocessed:             378 /  708 (53.39 %)
  Misses:                     385
    Direct:                   710
    Preprocessed:             330
  Uncacheable:                117
Primary storage:
  Hits:                      1132 / 1738 (65.13 %)
  Misses:                     606
  Cache size (GB):           0.45 / 0.51 (87.31 %)
  Files:                    11277
  Cleanups:                     8
Uncacheable:
  Autoconf compile/link:        5
  Called for linking:          97
  Called for preprocessing:     2
  Compilation failed:           3
  No input file:                8
  Preprocessing failed:         2
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.27.p1.hmpt
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1706641342:step_script
[0Ksection_start:1706641342:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=42366 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1706641370:archive_cache
[0Ksection_start:1706641370:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=42500 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1139126 responseStatus[0;m=201 Created token[0;m=64_snrGt
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=42540 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1139126 responseStatus[0;m=201 Created token[0;m=64_snrGt
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=42584 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1139126 responseStatus[0;m=201 Created token[0;m=64_snrGt
section_end:1706641372:upload_artifacts_on_success
[0Ksection_start:1706641372:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1706641373:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## build-nmodl.txt
[0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m
[0K  on BB5 map runner pnPo3yJy[0;m
section_start:1706637148:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1706637148:resolve_secrets
[0Ksection_start:1706637148:prepare_executor
[0K[0K[36;1mPreparing the "custom" executor[0;m[0;m
[0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m
BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user
TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor4227802280, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"]
Runner ID 29, project root hpc, project name nrn
Pipeline ID 189495, build ref , job ID 1139120
Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag
A slurm job will be created with name GL_J1139120_PROD_P2160_CP0_C2
Job parameters: memory=76G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation=
Not executing the chown -R
sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS
sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx]
Submitted batch job 1994130
job state: PD
job state: PD
job state: R
sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=76G    --job-name=GL_J1139120_PROD_P2160_CP0_C2 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495 --time=1:00:00 --wrap="sleep infinity"
srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495 --ntasks=2 --jobid=1994130 --cpus-per-task=8 --mem=76G
section_end:1706637152:prepare_executor
[0Ksection_start:1706637152:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Using git from spack modules
Running on r1i4n30 via bbpv1.epfl.ch...
section_end:1706637155:prepare_script
[0Ksection_start:1706637155:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
Using git from spack modules
[32;1mSkipping Git repository setup[0;m
[32;1mSkipping Git checkout[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1706637156:get_sources
[0Ksection_start:1706637156:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
Using git from spack modules
[32;1mChecking cache for build:nmodl-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=301910 revision[0;m=58ba2b95 version[0;m=14.2.0
cache.zip is up to date                           [0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1706637162:restore_cache
[0Ksection_start:1706637162:download_artifacts
[0K[0K[36;1mDownloading artifacts[0;m[0;m
Using git from spack modules
[32;1mDownloading artifacts for spack_setup (1139118)...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=302011 revision[0;m=58ba2b95 version[0;m=14.2.0
Downloading artifacts from coordinator... ok      [0;m  id[0;m=1139118 responseStatus[0;m=200 OK token[0;m=64_qRyWo
section_end:1706637162:download_artifacts
[0Ksection_start:1706637162:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m
Using git from spack modules
[32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m
[32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m
[32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m
[32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m
[32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m
[32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m
---                                                                                                             config:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139120/spack-config/config.yaml:2                  build_stage:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139120/spack-config/config.yaml:3                  - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139120/spack-build
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139120/spack-config/config.yaml:4                  source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139120/spack-source-cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/config.yaml:2               ccache: True
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2                                                              install_tree:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3                                                                root: $user_cache_path/software
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4                                                                projections:
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5                                                                  all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6}
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7                                                              environments_root: $user_cache_path/environments
/gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9                                                              build_jobs: 8
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:18     extensions:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:18     - $spack/bluebrain/spack-scripting
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:19     # This is the path to the root of the Spack install tree.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:19     # You can use $spack here to refer to the root of the spack instance.
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:37     template_dirs:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:37     - $spack/share/spack/templates
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:38     # Directory where licenses should be located
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:41     license_dir: $spack/etc/spack/licenses
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:76     test_stage: $user_cache_path/test
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:89     misc_cache: $user_cache_path/cache
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:95     connect_timeout: 10
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:100    verify_ssl: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:108    suppress_gpg_warnings: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:114    install_missing_compilers: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:119    checksum: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:124    deprecated: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:129    dirty: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:137    build_language: C
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:146    locks: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:151    url_fetch_method: urllib
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:180    concretizer: clingo
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:187    db_lock_timeout: 600
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:195    package_lock_timeout: null
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:200    shared_linking:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:205      type: rpath
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:211      bind: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:216    allow_sgid: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:221    terminal_title: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/config.yaml:225    binary_index_ttl: 600
_builtin                                                                                                          debug: False
[32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m
---                                                                                                                 concretizer:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139120/spack-config/concretizer.yaml:2                 reuse: False
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:22    targets:
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:26      granularity: microarchitectures
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:30      host_compatible: True
/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/J1139118/spack/etc/spack/defaults/concretizer.yaml:36    unify: True
[32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m
[32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m
Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P189495/J1139120_local_config)
[32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n  insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m
[32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = git@bbpgitlab.epfl.ch:
[url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"]
  insteadOf = ssh://git@bbpgitlab.epfl.ch/
[32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m
[32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m
Preparing to install nmodl%gcc ~legacy-unit
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ module load unstable ccache[0;m
[32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m
[32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m
CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495
[32;1m$ export CCACHE_MAXSIZE=512M[0;m
[32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m
[32;1m$ mkdir -p ${CCACHE_DIR}[0;m
[32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m
[32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m
[32;1m$ fi[0;m
[32;1m$ ccache --zero-stats[0;m
Statistics zeroed
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:  /nvme/bbpcihpcproj12/1994130/ccache
  Primary config:   /nvme/bbpcihpcproj12/1994130/ccache/ccache.conf
  Secondary config: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:    Tue Jan 30 18:52:46 2024
  Hits:                0 /    0
    Direct:            0 /    0
    Preprocessed:      0 /    0
  Misses:              0
    Direct:            0
    Preprocessed:      0
Primary storage:
  Hits:                0 /    0
  Misses:              0
  Cache size (GB):  0.46 / 0.51 (90.77 %)
  Files:            1401
[32;1m$ fi[0;m
[32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m
[32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m
Input spec
--------------------------------
 -   nmodl%gcc~legacy-unit

Concretized
--------------------------------
 -   v6ovmht  nmodl@develop%gcc@12.2.0~ipo~legacy-unit~llvm~llvm_cuda~python build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  sgwmsqz      ^bison@3.8.2%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  7v6k26x      ^catch2@3.0.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  u27b4to      ^cli11@2.1.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  vb7bdpg      ^cmake@3.24.3%gcc@12.2.0~doc+ncurses+ownlibs~qt build_system=generic build_type=Release arch=linux-rhel7-skylake
[^]  bbjadbi      ^flex@2.6.3%gcc@12.2.0+lex~nls build_system=autotools arch=linux-rhel7-skylake
[^]  t7yyhxk      ^fmt@9.1.0%gcc@12.2.0~ipo+pic~shared build_system=cmake build_type=RelWithDebInfo cxxstd=11 patches=08fb707 arch=linux-rhel7-skylake
[^]  zk4skox      ^ninja@1.11.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ee7ugzv      ^nlohmann-json@3.9.1%gcc@12.2.0~ipo+multiple_headers build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  3s7iuck      ^py-jinja2@3.1.2%gcc@12.2.0~i18n build_system=python_pip arch=linux-rhel7-skylake
[^]  d4uhr4f          ^py-markupsafe@2.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  3wgk4cb          ^py-pip@22.2.2%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  c6hdpvj          ^py-setuptools@63.0.0%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  ffmy45c          ^py-wheel@0.37.1%gcc@12.2.0 build_system=generic arch=linux-rhel7-skylake
[^]  pi3gdaj      ^py-pybind11@2.10.1%gcc@12.2.0~ipo build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake
[^]  uucrzmi      ^py-pytest@7.1.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  axib53z          ^py-attrs@22.1.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  s5xlzyb          ^py-iniconfig@1.1.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ugynn7h          ^py-packaging@21.3%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  4ld7fki              ^py-pyparsing@3.0.9%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  d7dkmvv                  ^py-flit-core@3.7.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  2zoh6fg          ^py-pluggy@1.0.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  a53pqvu          ^py-py@1.11.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  6tqbi2i          ^py-setuptools-scm@7.0.5%gcc@12.2.0+toml build_system=python_pip arch=linux-rhel7-skylake
[^]  c564cvo              ^py-typing-extensions@4.8.0%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  ksqdpfx          ^py-tomli@2.0.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  d4xzk5t      ^py-pyyaml@6.0%gcc@12.2.0+libyaml build_system=python_pip arch=linux-rhel7-skylake
[^]  skgytub          ^libyaml@0.2.5%gcc@12.2.0 build_system=autotools arch=linux-rhel7-skylake
[^]  bjojgfi          ^py-cython@0.29.32%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  oumzlg3      ^py-sympy@1.11.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  yqakowj          ^py-mpmath@1.2.1%gcc@12.2.0 build_system=python_pip arch=linux-rhel7-skylake
[^]  c2xj4m2      ^python@3.10.8%gcc@12.2.0+bz2+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tix~tkinter~ucs4+uuid+zlib build_system=generic patches=0d98e93,7d40923,f2fd060 arch=linux-rhel7-skylake
[^]  xfi3vdr      ^spdlog@1.10.0%gcc@12.2.0+fmt_external~ipo+shared build_system=cmake build_type=RelWithDebInfo arch=linux-rhel7-skylake

[32;1m$ set -o pipefail[0;m
[32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m
==> bison@3.8.2 : has external module in ['bison/3.8.2']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/bison-3.8.2-4q6ji4 (external bison-3.8.2-sgwmsqzphphzby2busuinegoak6lb3id)
==> cmake@3.24.3 : has external module in ['cmake/3.24.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/cmake-3.24.3-4blf3d (external cmake-3.24.3-vb7bdpgsupe5e2klkhkqos6vje2u4pns)
==> flex@2.6.3 : has external module in ['flex/2.6.3']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/flex-2.6.3-2jtkry (external flex-2.6.3-bbjadbirwaev3yr2guiy2u55ast426li)
==> ninja@1.11.1 : has external module in ['ninja/1.11.1']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ninja-1.11.1-o5qggc (external ninja-1.11.1-zk4skoxmkt7do2mk5lgnesas7ol3hhgg)
==> python@3.10.8 : has external module in ['python/3.10.8']
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5 (external python-3.10.8-c2xj4m2nyz6efq4m7arw3lneeqoz4z5m)
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/libyaml-0.2.5-skgytu
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/fmt-9.1.0-t7yyhx
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/catch2-3.0.1-7v6k26
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/cli11-2.1.1-u27b4t
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/nlohmann-json-3.9.1-ee7ugz
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pip-22.2.2-3wgk4c
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/spdlog-1.10.0-xfi3vd
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-63.0.0-c6hdpv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-wheel-0.37.1-ffmy45
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-markupsafe-2.1.1-d4uhr4
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-attrs-22.1.0-axib53
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pybind11-2.10.1-pi3gda
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-flit-core-3.7.1-d7dkmv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-iniconfig-1.1.1-s5xlzy
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-tomli-2.0.1-ksqdpf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-cython-0.29.32-bjojgf
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-jinja2-3.1.2-3s7iuc
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyparsing-3.0.9-4ld7fk
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-typing-extensions-4.8.0-c564cv
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pyyaml-6.0-d4xzk5
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-packaging-21.3-ugynn7
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-setuptools-scm-7.0.5-6tqbi2
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-mpmath-1.2.1-yqakow
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pluggy-1.0.0-2zoh6f
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-py-1.11.0-a53pqv
==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495, but it is owned by 0
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-sympy-1.11.1-oumzlg
[+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_applications/install_gcc-12.2.0-skylake/py-pytest-7.1.3-uucrzm
==> Installing nmodl-develop-v6ovmhtqx3wstiiamn5f73nzoourfjwu
==> No binary for nmodl-develop-v6ovmhtqx3wstiiamn5f73nzoourfjwu found: installing from source
==> No patches needed for nmodl
==> nmodl: Executing phase: 'cmake'
==> nmodl: Executing phase: 'build'
==> nmodl: Executing phase: 'install'
==> nmodl: Successfully installed nmodl-develop-v6ovmhtqx3wstiiamn5f73nzoourfjwu
  Fetch: 54.42s.  Build: 2m 3.64s.  Total: 2m 58.06s.
[+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P189495/software/install_gcc-12.2.0-skylake/nmodl-develop-v6ovmh
[32;1m$ set +o pipefail[0;m
[32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m
[32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m
[32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m
[32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m
Determined the installed hash to be v6ovmhtqx3wstiiamn5f73nzoourfjwu
[32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m
[32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m
[32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m
[32;1m$ ccache --cleanup[0;m
[32;1m$ ccache --show-stats --verbose[0;m
Summary:
  Cache directory:    /nvme/bbpcihpcproj12/1994130/ccache
  Primary config:     /nvme/bbpcihpcproj12/1994130/ccache/ccache.conf
  Secondary config:   /gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/ccache-4.6.1-q2jyor/etc/ccache.conf
  Stats updated:      Tue Jan 30 18:59:14 2024
  Hits:                133 /  135 (98.52 %)
    Direct:             27 /  135 (20.00 %)
    Preprocessed:      106 /  108 (98.15 %)
  Misses:                2
    Direct:            108
    Preprocessed:        2
  Uncacheable:          25
Primary storage:
  Hits:                160 /  270 (59.26 %)
  Misses:              110
  Cache size (GB):    0.46 / 0.51 (90.79 %)
  Files:              1405
Uncacheable:
  Called for linking:   24
  No input file:         1
[32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m
[32;1m$ fi[0;m
[32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m
[32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m
[32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m
[32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m
[32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m
Autoloading python/3.10.8
Autoloading intel-oneapi-mkl/2021.4.0
Autoloading hpe-mpi/2.27.p1.hmpt
[32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m
section_end:1706637555:step_script
[0Ksection_start:1706637555:archive_cache
[0K[0K[36;1mSaving cache for successful job[0;m[0;m
Using git from spack modules
[32;1mCreating cache build:nmodl-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=2856 revision[0;m=58ba2b95 version[0;m=14.2.0
ccache.tar: found 1 matching files and directories[0;m
Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected[0;m
[32;1mCreated cache[0;m
section_end:1706637575:archive_cache
[0Ksection_start:1706637575:upload_artifacts_on_success
[0K[0K[36;1mUploading artifacts for successful job[0;m[0;m
Using git from spack modules
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=3042 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
initial_environment.env: found 1 matching files and directories[0;m
spack-build-env.txt: found 1 matching files and directories[0;m
spack-build-out.txt: found 1 matching files and directories[0;m
spack-configure-args.txt: found 1 matching files and directories[0;m
Uploading artifacts as "archive" to coordinator... ok[0;m  id[0;m=1139120 responseStatus[0;m=201 Created token[0;m=64_qRyWo
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=3102 revision[0;m=58ba2b95 version[0;m=14.2.0
install.xml: found 1 matching files and directories[0;m
Uploading artifacts as "junit" to coordinator... ok[0;m  id[0;m=1139120 responseStatus[0;m=201 Created token[0;m=64_qRyWo
[32;1mUploading artifacts...[0;m
Runtime platform                                  [0;m  arch[0;m=amd64 os[0;m=linux pid[0;m=3162 revision[0;m=58ba2b95 version[0;m=14.2.0
spack_build_info.env: found 1 matching files and directories[0;m
spack_clone_variables.env: found 1 matching files and directories[0;m
Uploading artifacts as "dotenv" to coordinator... ok[0;m  id[0;m=1139120 responseStatus[0;m=201 Created token[0;m=64_qRyWo
section_end:1706637577:upload_artifacts_on_success
[0Ksection_start:1706637577:cleanup_file_variables
[0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m
Using git from spack modules
section_end:1706637578:cleanup_file_variables
[0K[32;1mJob succeeded[0;m

## GitLab logs for neuronsimulator-nrn#2650
!

## mac-m1-cmake-build-cmake-on-off-off-address.txt
[0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m
[0K  on macos-arm64 vGzz-bdp[0;m
section_start:1706637029:resolve_secrets
[0K[0K[36;1mResolving secrets[0;m[0;m
section_end:1706637029:resolve_secrets
[0Ksection_start:1706637029:prepare_executor
[0K[0K[36;1mPreparing the "shell" executor[0;m[0;m
[0KUsing Shell executor...[0;m
section_end:1706637029:prepare_executor
[0Ksection_start:1706637029:prepare_script
[0K[0K[36;1mPreparing environment[0;m[0;m
Running on bbpmacglr01.bbp.epfl.ch...
section_end:1706637029:prepare_script
[0Ksection_start:1706637029:get_sources
[0K[0K[36;1mGetting source from Git repository[0;m[0;m
[32;1mFetching changes with git depth set to 20...[0;m
Initialized empty Git repository in /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/.git/
[32;1mCreated fresh repository.[0;m
[32;1mChecking out deb29fb3 as api-hl...[0;m
[32;1mSkipping Git submodules setup[0;m
section_end:1706637031:get_sources
[0Ksection_start:1706637031:restore_cache
[0K[0K[36;1mRestoring cache[0;m[0;m
[32;1mChecking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-api-hl-1-non_protected...[0;m
Runtime platform                                  [0;m  arch[0;m=arm64 os[0;m=darwin pid[0;m=59342 revision[0;m=43b2dc3d version[0;m=15.4.0
No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m
[32;1mSuccessfully extracted cache[0;m
section_end:1706637034:restore_cache
[0Ksection_start:1706637034:step_script
[0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m
[32;1m$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command[0;m
[32;1m$ real_python=$(python3 resolve_shim.py)[0;m
[32;1m$ echo "python3=$(command -v python3) is really ${real_python}"[0;m
python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python
[32;1m$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv[0;m
[32;1m$ venv/bin/python3 -m ensurepip --upgrade --default-pip[0;m
Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpyr0nv_y0
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpyr0nv_y0/setuptools-68.2.2-py3-none-any.whl
Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpyr0nv_y0/pip-23.3.1-py3-none-any.whl
Installing collected packages: setuptools, pip
Successfully installed pip-23.3.1 setuptools-68.2.2
[32;1m$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt[0;m
Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (23.3.1)
Collecting pip
  Using cached pip-23.3.2-py3-none-any.whl.metadata (3.5 kB)
Collecting wheel (from -r nrn_requirements.txt (line 1))
  Using cached wheel-0.42.0-py3-none-any.whl.metadata (2.2 kB)
Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (68.2.2)
Collecting setuptools (from -r nrn_requirements.txt (line 2))
  Using cached setuptools-69.0.3-py3-none-any.whl.metadata (6.3 kB)
Collecting setuptools_scm (from -r nrn_requirements.txt (line 3))
  Using cached setuptools_scm-8.0.4-py3-none-any.whl.metadata (6.4 kB)
Collecting scikit-build (from -r nrn_requirements.txt (line 4))
  Using cached scikit_build-0.17.6-py3-none-any.whl.metadata (14 kB)
Collecting matplotlib (from -r nrn_requirements.txt (line 5))
  Using cached matplotlib-3.8.2-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting bokeh<3 (from -r nrn_requirements.txt (line 7))
  Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB)
Collecting ipython (from -r nrn_requirements.txt (line 8))
  Using cached ipython-8.20.0-py3-none-any.whl.metadata (5.9 kB)
Collecting cython<3 (from -r nrn_requirements.txt (line 9))
  Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB)
Collecting packaging (from -r nrn_requirements.txt (line 10))
  Using cached packaging-23.2-py3-none-any.whl.metadata (3.2 kB)
Collecting pytest (from -r nrn_requirements.txt (line 11))
  Using cached pytest-8.0.0-py3-none-any.whl.metadata (7.8 kB)
Collecting pytest-cov (from -r nrn_requirements.txt (line 12))
  Using cached pytest_cov-4.1.0-py3-none-any.whl.metadata (26 kB)
Collecting mpi4py (from -r nrn_requirements.txt (line 13))
  Using cached mpi4py-3.1.5-cp310-cp310-macosx_12_0_arm64.whl
Collecting numpy (from -r nrn_requirements.txt (line 14))
  Using cached numpy-1.26.3-cp310-cp310-macosx_11_0_arm64.whl.metadata (61 kB)
Collecting find_libpython (from -r nrn_requirements.txt (line 15))
  Using cached find_libpython-0.3.1-py3-none-any.whl.metadata (2.7 kB)
Collecting typing-extensions (from setuptools_scm->-r nrn_requirements.txt (line 3))
  Using cached typing_extensions-4.9.0-py3-none-any.whl.metadata (3.0 kB)
Collecting tomli>=1 (from setuptools_scm->-r nrn_requirements.txt (line 3))
  Using cached tomli-2.0.1-py3-none-any.whl (12 kB)
Collecting distro (from scikit-build->-r nrn_requirements.txt (line 4))
  Using cached distro-1.9.0-py3-none-any.whl.metadata (6.8 kB)
Collecting contourpy>=1.0.1 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached contourpy-1.2.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB)
Collecting cycler>=0.10 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB)
Collecting fonttools>=4.22.0 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached fonttools-4.47.2-cp310-cp310-macosx_10_9_universal2.whl.metadata (157 kB)
Collecting kiwisolver>=1.3.1 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.4 kB)
Collecting pillow>=8 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached pillow-10.2.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.7 kB)
Collecting pyparsing>=2.3.1 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached pyparsing-3.1.1-py3-none-any.whl.metadata (5.1 kB)
Collecting python-dateutil>=2.7 (from matplotlib->-r nrn_requirements.txt (line 5))
  Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB)
Collecting Jinja2>=2.9 (from bokeh<3->-r nrn_requirements.txt (line 7))
  Using cached Jinja2-3.1.3-py3-none-any.whl.metadata (3.3 kB)
Collecting PyYAML>=3.10 (from bokeh<3->-r nrn_requirements.txt (line 7))
  Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB)
Collecting tornado>=5.1 (from bokeh<3->-r nrn_requirements.txt (line 7))
  Using cached tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl.metadata (2.5 kB)
Collecting decorator (from ipython->-r nrn_requirements.txt (line 8))
  Using cached decorator-5.1.1-py3-none-any.whl (9.1 kB)
Collecting jedi>=0.16 (from ipython->-r nrn_requirements.txt (line 8))
  Using cached jedi-0.19.1-py2.py3-none-any.whl.metadata (22 kB)
Collecting matplotlib-inline (from ipython->-r nrn_requirements.txt (line 8))
  Using cached matplotlib_inline-0.1.6-py3-none-any.whl (9.4 kB)
Collecting prompt-toolkit<3.1.0,>=3.0.41 (from ipython->-r nrn_requirements.txt (line 8))
  Using cached prompt_toolkit-3.0.43-py3-none-any.whl.metadata (6.5 kB)
Collecting pygments>=2.4.0 (from ipython->-r nrn_requirements.txt (line 8))
  Using cached pygments-2.17.2-py3-none-any.whl.metadata (2.6 kB)
Collecting stack-data (from ipython->-r nrn_requirements.txt (line 8))
  Using cached stack_data-0.6.3-py3-none-any.whl.metadata (18 kB)
Collecting traitlets>=5 (from ipython->-r nrn_requirements.txt (line 8))
  Using cached traitlets-5.14.1-py3-none-any.whl.metadata (10 kB)
Collecting exceptiongroup (from ipython->-r nrn_requirements.txt (line 8))
  Using cached exceptiongroup-1.2.0-py3-none-any.whl.metadata (6.6 kB)
Collecting pexpect>4.3 (from ipython->-r nrn_requirements.txt (line 8))
  Using cached pexpect-4.9.0-py2.py3-none-any.whl.metadata (2.5 kB)
Collecting iniconfig (from pytest->-r nrn_requirements.txt (line 11))
  Using cached iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
Collecting pluggy<2.0,>=1.3.0 (from pytest->-r nrn_requirements.txt (line 11))
  Using cached pluggy-1.4.0-py3-none-any.whl.metadata (4.3 kB)
Collecting coverage>=5.2.1 (from coverage[toml]>=5.2.1->pytest-cov->-r nrn_requirements.txt (line 12))
  Using cached coverage-7.4.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (8.2 kB)
Collecting parso<0.9.0,>=0.8.3 (from jedi>=0.16->ipython->-r nrn_requirements.txt (line 8))
  Using cached parso-0.8.3-py2.py3-none-any.whl (100 kB)
Collecting MarkupSafe>=2.0 (from Jinja2>=2.9->bokeh<3->-r nrn_requirements.txt (line 7))
  Using cached MarkupSafe-2.1.4-cp310-cp310-macosx_10_9_universal2.whl.metadata (3.0 kB)
Collecting ptyprocess>=0.5 (from pexpect>4.3->ipython->-r nrn_requirements.txt (line 8))
  Using cached ptyprocess-0.7.0-py2.py3-none-any.whl (13 kB)
Collecting wcwidth (from prompt-toolkit<3.1.0,>=3.0.41->ipython->-r nrn_requirements.txt (line 8))
  Using cached wcwidth-0.2.13-py2.py3-none-any.whl.metadata (14 kB)
Collecting six>=1.5 (from python-dateutil>=2.7->matplotlib->-r nrn_requirements.txt (line 5))
  Using cached six-1.16.0-py2.py3-none-any.whl (11 kB)
Collecting executing>=1.2.0 (from stack-data->ipython->-r nrn_requirements.txt (line 8))
  Using cached executing-2.0.1-py2.py3-none-any.whl.metadata (9.0 kB)
Collecting asttokens>=2.1.0 (from stack-data->ipython->-r nrn_requirements.txt (line 8))
  Using cached asttokens-2.4.1-py2.py3-none-any.whl.metadata (5.2 kB)
Collecting pure-eval (from stack-data->ipython->-r nrn_requirements.txt (line 8))
  Using cached pure_eval-0.2.2-py3-none-any.whl (11 kB)
Using cached pip-23.3.2-py3-none-any.whl (2.1 MB)
Using cached wheel-0.42.0-py3-none-any.whl (65 kB)
Using cached setuptools-69.0.3-py3-none-any.whl (819 kB)
Using cached setuptools_scm-8.0.4-py3-none-any.whl (42 kB)
Using cached scikit_build-0.17.6-py3-none-any.whl (84 kB)
Using cached matplotlib-3.8.2-cp310-cp310-macosx_11_0_arm64.whl (7.5 MB)
Using cached ipython-8.20.0-py3-none-any.whl (809 kB)
Using cached Cython-0.29.37-py2.py3-none-any.whl (989 kB)
Using cached packaging-23.2-py3-none-any.whl (53 kB)
Using cached pytest-8.0.0-py3-none-any.whl (334 kB)
Using cached pytest_cov-4.1.0-py3-none-any.whl (21 kB)
Using cached numpy-1.26.3-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB)
Using cached find_libpython-0.3.1-py3-none-any.whl (8.4 kB)
Using cached contourpy-1.2.0-cp310-cp310-macosx_11_0_arm64.whl (242 kB)
Using cached coverage-7.4.1-cp310-cp310-macosx_11_0_arm64.whl (206 kB)
Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB)
Using cached exceptiongroup-1.2.0-py3-none-any.whl (16 kB)
Using cached fonttools-4.47.2-cp310-cp310-macosx_10_9_universal2.whl (2.8 MB)
Using cached jedi-0.19.1-py2.py3-none-any.whl (1.6 MB)
Using cached Jinja2-3.1.3-py3-none-any.whl (133 kB)
Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB)
Using cached pexpect-4.9.0-py2.py3-none-any.whl (63 kB)
Using cached pillow-10.2.0-cp310-cp310-macosx_11_0_arm64.whl (3.3 MB)
Using cached pluggy-1.4.0-py3-none-any.whl (20 kB)
Using cached prompt_toolkit-3.0.43-py3-none-any.whl (386 kB)
Using cached pygments-2.17.2-py3-none-any.whl (1.2 MB)
Using cached pyparsing-3.1.1-py3-none-any.whl (103 kB)
Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl (169 kB)
Using cached tornado-6.4-cp38-abi3-macosx_10_9_universal2.whl (433 kB)
Using cached traitlets-5.14.1-py3-none-any.whl (85 kB)
Using cached typing_extensions-4.9.0-py3-none-any.whl (32 kB)
Using cached distro-1.9.0-py3-none-any.whl (20 kB)
Using cached stack_data-0.6.3-py3-none-any.whl (24 kB)
Using cached asttokens-2.4.1-py2.py3-none-any.whl (27 kB)
Using cached executing-2.0.1-py2.py3-none-any.whl (24 kB)
Using cached MarkupSafe-2.1.4-cp310-cp310-macosx_10_9_universal2.whl (17 kB)
Using cached wcwidth-0.2.13-py2.py3-none-any.whl (34 kB)
Installing collected packages: wcwidth, pure-eval, ptyprocess, find_libpython, wheel, typing-extensions, traitlets, tornado, tomli, six, setuptools, PyYAML, pyparsing, pygments, prompt-toolkit, pluggy, pip, pillow, pexpect, parso, packaging, numpy, mpi4py, MarkupSafe, kiwisolver, iniconfig, fonttools, executing, exceptiongroup, distro, decorator, cython, cycler, coverage, setuptools_scm, scikit-build, python-dateutil, pytest, matplotlib-inline, Jinja2, jedi, contourpy, asttokens, stack-data, pytest-cov, matplotlib, bokeh, ipython
  Attempting uninstall: setuptools
    Found existing installation: setuptools 68.2.2
    Uninstalling setuptools-68.2.2:
      Successfully uninstalled setuptools-68.2.2
  Attempting uninstall: pip
    Found existing installation: pip 23.3.1
    Uninstalling pip-23.3.1:
      Successfully uninstalled pip-23.3.1
Successfully installed Jinja2-3.1.3 MarkupSafe-2.1.4 PyYAML-6.0.1 asttokens-2.4.1 bokeh-2.4.3 contourpy-1.2.0 coverage-7.4.1 cycler-0.12.1 cython-0.29.37 decorator-5.1.1 distro-1.9.0 exceptiongroup-1.2.0 executing-2.0.1 find_libpython-0.3.1 fonttools-4.47.2 iniconfig-2.0.0 ipython-8.20.0 jedi-0.19.1 kiwisolver-1.4.5 matplotlib-3.8.2 matplotlib-inline-0.1.6 mpi4py-3.1.5 numpy-1.26.3 packaging-23.2 parso-0.8.3 pexpect-4.9.0 pillow-10.2.0 pip-23.3.2 pluggy-1.4.0 prompt-toolkit-3.0.43 ptyprocess-0.7.0 pure-eval-0.2.2 pygments-2.17.2 pyparsing-3.1.1 pytest-8.0.0 pytest-cov-4.1.0 python-dateutil-2.8.2 scikit-build-0.17.6 setuptools-69.0.3 setuptools_scm-8.0.4 six-1.16.0 stack-data-0.6.3 tomli-2.0.1 tornado-6.4 traitlets-5.14.1 typing-extensions-4.9.0 wcwidth-0.2.13 wheel-0.42.0
[32;1m$ git submodule update --init --recursive --force --depth 1 -- external/nmodl[0;m
Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl'
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/nmodl'...
From https://github.com/BlueBrain/nmodl
 * branch            bb4dfd2fbc5209bb1893d3c681157db743ca1dfc -> FETCH_HEAD
Submodule path 'external/nmodl': checked out 'bb4dfd2fbc5209bb1893d3c681157db743ca1dfc'
Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions'
Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2'
Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11'
Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen'
Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt'
Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json'
Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11'
Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog'
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'...
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/nmodl/ext/catch2'...
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/nmodl/ext/cli11'...
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/nmodl/ext/eigen'...
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/nmodl/ext/fmt'...
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/nmodl/ext/json'...
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/nmodl/ext/pybind11'...
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/nmodl/ext/spdlog'...
From https://github.com/BlueBrain/hpc-coding-conventions
 * branch            f8f8d69a66c23978d1c9c5dce62de79466f26e5d -> FETCH_HEAD
Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d'
From https://github.com/catchorg/Catch2
 * branch            3f0283de7a9c43200033da996ff9093be3ac84dc -> FETCH_HEAD
Submodule path 'external/nmodl/ext/catch2': checked out '3f0283de7a9c43200033da996ff9093be3ac84dc'
From https://github.com/CLIUtils/CLI11
 * branch            b9be5b9444772324459989177108a6a65b8b2769 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/cli11': checked out 'b9be5b9444772324459989177108a6a65b8b2769'
From https://gitlab.com/libeigen/eigen
 * branch            3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
From https://github.com/fmtlib/fmt
 * branch            e69e5f977d458f2650bb346dadf2ad30c5320281 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/fmt': checked out 'e69e5f977d458f2650bb346dadf2ad30c5320281'
From https://github.com/nlohmann/json
 * branch            4f8fba14066156b73f1189a2b8bd568bde5284c5 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/json': checked out '4f8fba14066156b73f1189a2b8bd568bde5284c5'
From https://github.com/pybind/pybind11
 * branch            914c06fb252b6cc3727d0eedab6736e88a3fcb01 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/pybind11': checked out '914c06fb252b6cc3727d0eedab6736e88a3fcb01'
From https://github.com/gabime/spdlog
 * branch            7e635fca68d014934b4af8a1cf874f63989352b7 -> FETCH_HEAD
Submodule path 'external/nmodl/ext/spdlog': checked out '7e635fca68d014934b4af8a1cf874f63989352b7'
[32;1m$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt[0;m
Requirement already satisfied: Jinja2>=2.9.3 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 1)) (3.1.3)
Requirement already satisfied: PyYAML>=3.13 in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 2)) (6.0.1)
Requirement already satisfied: pytest in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 3)) (8.0.0)
Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 4)) (4.1.0)
Collecting sympy (from -r external/nmodl/requirements.txt (line 5))
  Using cached sympy-1.12-py3-none-any.whl (5.7 MB)
Requirement already satisfied: numpy in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 6)) (1.26.3)
Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 7)) (0.3.1)
Requirement already satisfied: scikit-build in ./venv/lib/python3.10/site-packages (from -r external/nmodl/requirements.txt (line 8)) (0.17.6)
Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9.3->-r external/nmodl/requirements.txt (line 1)) (2.1.4)
Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.0)
Requirement already satisfied: packaging in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (23.2)
Requirement already satisfied: pluggy<2.0,>=1.3.0 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.4.0)
Requirement already satisfied: exceptiongroup>=1.0.0rc8 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (1.2.0)
Requirement already satisfied: tomli>=1.0.0 in ./venv/lib/python3.10/site-packages (from pytest->-r external/nmodl/requirements.txt (line 3)) (2.0.1)
Requirement already satisfied: coverage>=5.2.1 in ./venv/lib/python3.10/site-packages (from coverage[toml]>=5.2.1->pytest-cov->-r external/nmodl/requirements.txt (line 4)) (7.4.1)
Collecting mpmath>=0.19 (from sympy->-r external/nmodl/requirements.txt (line 5))
  Using cached mpmath-1.3.0-py3-none-any.whl (536 kB)
Requirement already satisfied: distro in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (1.9.0)
Requirement already satisfied: setuptools>=42.0.0 in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (69.0.3)
Requirement already satisfied: wheel>=0.32.0 in ./venv/lib/python3.10/site-packages (from scikit-build->-r external/nmodl/requirements.txt (line 8)) (0.42.0)
Installing collected packages: mpmath, sympy
Successfully installed mpmath-1.3.0 sympy-1.12
[32;1m$ source ./venv/bin/activate[0;m
[32;1m$ export PYTHON=${PWD}/venv/bin/python[0;m
[32;1m$ ${PYTHON} --version[0;m
Python 3.10.13
[32;1m$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"[0;m
[32;1m$ export CXX=${CXX:-g++}[0;m
[32;1m$ export CC=${CC:-gcc}[0;m
[32;1m$ brew install flex bison[0;m
==> Homebrew collects anonymous analytics.
Read the analytics documentation (and how to opt-out) here:
  https://docs.brew.sh/Analytics
No analytics have been recorded yet (nor will be during this `brew` run).

Running `brew update --auto-update`...
Warning: flex 2.6.4_2 is already installed and up-to-date.
To reinstall 2.6.4_2, run:
  brew reinstall flex
Warning: bison 3.8.2 is already installed and up-to-date.
To reinstall 3.8.2, run:
  brew reinstall bison
[32;1m$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"[0;m
[32;1m$ export INSTALL_DIR=$(pwd)/install[0;m
[32;1m$ echo $LANG[0;m

[32;1m$ echo $LC_ALL[0;m

[32;1m$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")[0;m
[32;1m$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'[0;m
[32;1m$ cmake_args=(-G Ninja)[0;m
[32;1m$ if [[ -n "${sanitizer}" ]]; then[0;m
[32;1m$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))[0;m
[32;1m$ fi[0;m
[32;1m$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})[0;m
[32;1m$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")[0;m
[32;1m$ mkdir build && cd build[0;m
[32;1m$ echo "Building with ${cmake_args[@]}"[0;m
Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/venv/bin/python
[32;1m$ cmake .. "${cmake_args[@]}"[0;m
-- The C compiler identification is AppleClang 14.0.0.14000029
-- The CXX compiler identification is AppleClang 14.0.0.14000029
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check
-- Sub-module : missing external/coding-conventions : running git submodule update --init
Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions'
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/coding-conventions'...
Submodule path 'external/coding-conventions': checked out '80a2c9013463b89b5c426e18403e9a2f87c59a00'
-- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123
Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123'
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/Random123'...
From https://github.com/BlueBrain/Random123
 * branch            b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD
Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1'
-- 3rd party project: using Random123 from "external/Random123"
-- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen
Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen'
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/eigen'...
From https://gitlab.com/libeigen/eigen
 * branch            3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD
Submodule path 'external/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c'
-- 3rd party project: using eigen from "external/eigen"
-- Enabling sanitizers: address
-- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib
-- Checking if /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/venv/bin/python is a working python
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2")
-- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6")
-- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include
-- Found MPI_C: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1")
-- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1")
-- Found MPI: TRUE (found version "3.1")
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD
-- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success
-- Found Threads: TRUE
-- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11
Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11'
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/CLI11'...
From https://github.com/CLIUtils/CLI11
 * branch            291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD
Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2'
-- 3rd party project: using CLI11 from "external/CLI11"
CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Building CoreNEURON
-- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)")
-- Found Perl: /usr/bin/perl (found version "5.30.3")
-- Could NOT find nmodl (missing: nmodl_BINARY nmodl_INCLUDE nmodl_PYTHONPATH)
-- Sub-project : using nmodl from from /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/nmodl
-- CHECKING FOR FLEX/BISON
-- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0")
--  Adding Flex include path as : /opt/homebrew/opt/flex/include/
-- NMODL_TEST_FORMATTING: OFF
-- NMODL_GIT_HOOKS: OFF
-- NMODL_GIT_COMMIT_HOOKS:
-- NMODL_GIT_PUSH_HOOKS: courtesy-msg
-- NMODL_STATIC_ANALYSIS: OFF
-- NMODL_TEST_STATIC_ANALYSIS: OFF
-- 3rd party project: using eigen from "ext/eigen"
-- 3rd party project: using fmt from "ext/fmt"
-- Version: 10.2.1
-- Build type: Custom
-- 3rd party project: using json from "ext/json"
CMake Deprecation Warning at external/nmodl/ext/json/CMakeLists.txt:1 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- Using the single-header code from /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/nmodl/ext/json/single_include/
-- 3rd party project: using pybind11 from "ext/pybind11"
CMake Deprecation Warning at external/nmodl/ext/pybind11/CMakeLists.txt:8 (cmake_minimum_required):
  Compatibility with CMake < 3.5 will be removed from a future version of
  CMake.

  Update the VERSION argument <min> value or use a ...<max> suffix to tell
  CMake that the project does not need compatibility with older versions.


-- pybind11 v2.9.2
CMake Warning (dev) at external/nmodl/ext/pybind11/tools/FindPythonLibsNew.cmake:98 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

Call Stack (most recent call first):
  external/nmodl/ext/pybind11/tools/pybind11Tools.cmake:50 (find_package)
  external/nmodl/ext/pybind11/tools/pybind11Common.cmake:206 (include)
  external/nmodl/ext/pybind11/CMakeLists.txt:200 (include)
This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PythonInterp: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/venv/bin/python (found version "3.10.13")
-- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- 3rd party project: using spdlog from "ext/spdlog"
-- Build spdlog: 1.12.0
-- Build type: Custom
-- CHECKING FOR PYTHON
CMake Warning (dev) at external/nmodl/CMakeLists.txt:162 (find_package):
  Policy CMP0148 is not set: The FindPythonInterp and FindPythonLibs modules
  are removed.  Run "cmake --help-policy CMP0148" for policy details.  Use
  the cmake_policy command to set the policy and suppress this warning.

This warning is for project developers.  Use -Wno-dev to suppress it.

-- Found PythonInterp: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.8")
--
-- Configured NMODL 0.0 (bb4dfd2 2024-01-27 11:12:54 +0100)
--
-- You can now build NMODL using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------------+--------------------------------------------------------
--  Target             |   Description
-- --------------------+--------------------------------------------------------
-- test                | Run unit tests
-- install             | Will install NMODL to: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g -openmp-simd
-- Build Type          | Custom
-- Python Bindings     | ON
-- Flex                | /opt/homebrew/opt/flex/bin/flex
-- Bison               | /opt/homebrew/opt/bison/bin/bison
-- Python              | /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/venv/bin/python
--   Linked against    | TRUE
-- --------------------+--------------------------------------------------------
--  See documentation : https://github.com/BlueBrain/nmodl/
-- --------------------+--------------------------------------------------------
--
--
-- CoreNEURON is enabled with following build configuration:
-- --------------------+--------------------------------------------------------
--  Build option       | Status
-- --------------------+--------------------------------------------------------
-- CXX COMPILER        | /usr/bin/g++
-- COMPILE FLAGS       | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope
-- Build Type          | SHARED
-- MPI                 | ON
--   DYNAMIC           | OFF
--   INC               | /opt/homebrew/Cellar/open-mpi/5.0.1/include
-- OpenMP              | ON
-- NMODL PATH          | /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/bin/nmodl
-- NMODL FLAGS         |
-- GPU Support         | OFF
-- Auto Timeout        | ON
-- Wrap exp()          | OFF
-- SplayTree Queue     | ON
-- NetReceive Buffer   | ON
-- Caliper             | OFF
-- Likwid              | OFF
-- Unit Tests          | ON
-- Reporting           | OFF
-- --------------------+--------------------------------------------------------
--
Extracting link flags from target 'nrngnu', beware that this can be fragile. Got:
Extracting link flags from target 'sparse13', beware that this can be fragile. Got:
Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got:
Generating link flags from path /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib
Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
-- Sub-module : missing /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/catch2 : running git submodule update --init
Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2'
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/external/catch2'...
Submodule path 'external/catch2': checked out 'c4e3767e265808590986d5db6ca1b5532a7f3d13'
-- Found Python module 'pytest' with version(s): 8.0.0
-- Found Python module 'pytest_cov' with version(s): 4.1.0
-- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata
Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata'
Cloning into '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/test/rxd/testdata'...
From https://github.com/neuronsimulator/rxdtestdata
 * branch            30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD
Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58'
-- 3rd party project: using rxd/testdata from "test/rxd/testdata"
-- Found Python module 'mpi4py' with version(s): 3.1.5
-- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled
-- Found Python module 'mpi4py' with version(s): 3.1.5
-- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled
-- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled
-- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled
-- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled
-- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled
-- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled
-- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled
-- Found OpenSSL: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib (found version "3.2.0")
--
-- Configured NEURON 9.0.0
--
-- You can now build NEURON using:
--   cmake --build . --parallel 8 [--target TARGET]
-- You might want to adjust the number of parallel build jobs for your system.
-- Some non-default targets you might want to build:
-- --------------+--------------------------------------------------------------
--  Target       |   Description
-- --------------+--------------------------------------------------------------
-- install       | Will install NEURON to: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install
--               | Change the install location of NEURON using:
--               |   cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path>
-- docs          | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean
-- uninstall     | Removes files installed by make install (todo)
-- --------------+--------------------------------------------------------------
--  Build option | Status
-- --------------+--------------------------------------------------------------
-- C COMPILER    | /usr/bin/gcc
-- CXX COMPILER  | /usr/bin/g++
-- BUILD_TYPE    | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug)
-- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd
-- Shared        | ON
-- MPI           | ON
--   DYNAMIC     | OFF
--   INC         | /opt/homebrew/Cellar/open-mpi/5.0.1/include
--   LIB         | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Python        | ON
--   DYNAMIC     | OFF
--   MODULE      | ON
--  python3.10 (default)
--   EXE         | /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/venv/bin/python
--   INC         | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10
--   LIB         | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib
-- Readline      | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd
-- Curses        | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd
-- RX3D          | OFF
-- Interviews    | OFF
-- CoreNEURON    | ON
--   PATH        | /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/coreneuron
--   LINK FLAGS  |  -lcorenrnmech  -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib
-- Tests         | ON
-- --------------+--------------------------------------------------------------
--  See documentation : https://www.neuron.yale.edu/neuron/
-- --------------+--------------------------------------------------------------
--
-- Configuring done (24.8s)
-- Generating done (0.1s)
-- Build files have been written to: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build
[32;1m$ ccache -z[0;m
Statistics zeroed
[32;1m$ ccache -vs 2>/dev/null[0;m
Cache directory:    /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/ccache
Config file:        /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf
Stats updated:      Tue Jan 30 18:51:42 2024
Local storage:
  Cache size (GiB):  0.3 / 5.0 ( 5.23%)
  Files:            1918
  Hits:                0
  Misses:              0
  Reads:               0
  Writes:              0
[32;1m$ cmake --build . --parallel[0;m
[0/2] Re-checking globbed directories...
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[17/1744] Update hh.mod for CoreNEURON compatibility
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../../../../../external/nmodl/src/parser/diffeq.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
../../../../../external/nmodl/src/parser/diffeq.yy: warning: fix-its can be applied.  Rerun with option '--update'. [-Wother]
[473/1744] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/cfg.cpp.o
[474/1744] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/color_sinks.cpp.o
[475/1744] -- NMODL : GENERATING UNIT PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/unit.yy:49.1-38: warning: deprecated directive: '%define parser_class_name {UnitParser}', use '%define api.parser.class {UnitParser}' [-Wdeprecated]
   49 | %define parser_class_name {UnitParser}
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      | %define api.parser.class {UnitParser}
../../../../../external/nmodl/src/parser/unit.yy: warning: fix-its can be applied.  Rerun with option '--update'. [-Wother]
[476/1744] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/code_printer.cpp.o
[477/1744] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/async.cpp.o
[478/1744] -- NMODL : GENERATING C (11) PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/c11.yy:52.1-35: warning: deprecated directive: '%define parser_class_name {CParser}', use '%define api.parser.class {CParser}' [-Wdeprecated]
   52 | %define parser_class_name {CParser}
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      | %define api.parser.class {CParser}
../../../../../external/nmodl/src/parser/c11.yy: warning: fix-its can be applied.  Rerun with option '--update'. [-Wother]
[479/1744] Building CXX object external/nmodl/ext/fmt/CMakeFiles/fmt.dir/src/format.cc.o
[480/1744] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/nmodl_printer.cpp.o
[481/1744] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/common_utils.cpp.o
[482/1744] Linking CXX static library lib/libfmt.a
[483/1744] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/file_library.cpp.o
[484/1744] -- NMODL : GENERATING NMODL_CORE PARSER WITH BISON! --
../../../../../external/nmodl/src/parser/nmodl.yy:64.1-39: warning: deprecated directive: '%define parser_class_name {NmodlParser}', use '%define api.parser.class {NmodlParser}' [-Wdeprecated]
   64 | %define parser_class_name {NmodlParser}
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      | %define api.parser.class {NmodlParser}
../../../../../external/nmodl/src/parser/nmodl.yy: warning: 3 shift/reduce conflicts [-Wconflicts-sr]
../../../../../external/nmodl/src/parser/nmodl.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
../../../../../external/nmodl/src/parser/nmodl.yy: warning: fix-its can be applied.  Rerun with option '--update'. [-Wother]
[485/1744] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/perf_stat.cpp.o
[486/1744] Generating ../../../../lib/nmodl/__init__.py
[487/1744] Generating ../../../../lib/nmodl/ast.py
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[489/1744] Generating ../../../../lib/nmodl/ode.py
[490/1744] Generating ../../../../lib/nmodl/symtab.py
[491/1744] Generating ../../../../lib/nmodl/visitor.py
[492/1744] Generating ../../../../include/newton/newton.hpp
[493/1744] Generating ../../../../include/crout/crout.hpp
[494/1744] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/string_utils.cpp.o
[495/1744] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/table_data.cpp.o
[496/1744] Building CXX object external/nmodl/src/utils/CMakeFiles/util.dir/__/config/config.cpp.o
[497/1744] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/spalloc.cpp.o
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[502/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Binomial.cpp.o
[503/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/ACG.cpp.o
[504/1744] Building CXX object src/sparse13/CMakeFiles/sparse13.dir/sputils.cpp.o
[505/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/DiscUnif.cpp.o
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[507/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Erlang.cpp.o
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[514/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/mcran4.cpp.o
[515/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/NegExp.cpp.o
[516/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/MLCG.cpp.o
[517/1744] Building CXX object external/nmodl/ext/spdlog/CMakeFiles/spdlog.dir/src/spdlog.cpp.o
[518/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/nrnisaac.cpp.o
[519/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Normal.cpp.o
[520/1744] Linking CXX static library lib/libspdlog.a
[521/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Poisson.cpp.o
[522/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Rand.cpp.o
[523/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Random.cpp.o
[524/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RndInt.cpp.o
[525/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/RNG.cpp.o
[526/1744] [FLEX][modlunitlexer] Building scanner with flex 2.6.4
[527/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Uniform.cpp.o
[528/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/Weibull.cpp.o
[529/1744] [FLEX][nocmodllexer] Building scanner with flex 2.6.4
[530/1744] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nmodl/diffeq.ypp: warning: 5 shift/reduce conflicts [-Wconflicts-sr]
../src/nmodl/diffeq.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[531/1744] Building CXX object src/gnu/CMakeFiles/nrngnu.dir/nrnran123.cpp.o
[532/1744] Building CXX object external/nmodl/src/printer/CMakeFiles/printer.dir/json_printer.cpp.o
[533/1744] Linking CXX static library lib/libnrngnu.a
[534/1744] [BISON][modlunitparser] Building parser with bison 3.8.2
[535/1744] Generating ../../share/nrn/nrnmain.cpp
[536/1744] [BISON][ocparser] Building parser with bison 3.8.2
../src/oc/parse.ypp: warning: 96 shift/reduce conflicts [-Wconflicts-sr]
../src/oc/parse.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[537/1744] [BISON][nocmodlparser] Building parser with bison 3.8.2
../src/nmodl/parse1.ypp: warning: 3 shift/reduce conflicts [-Wconflicts-sr]
../src/nmodl/parse1.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
[538/1744] Generating ../oc/hocusr.h
[539/1744] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/declare.cpp.o
[540/1744] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/kinunit.cpp.o
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[542/1744] Building CXX object external/nmodl/src/pybind/CMakeFiles/pyembed.dir/pyembed.cpp.o
[543/1744] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/io.cpp.o
[544/1744] cd /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[545/1744] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/init.cpp.o
[546/1744] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/model.cpp.o
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[549/1744] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/symbol.cpp.o
[550/1744] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/units1.cpp.o
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[553/1744] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/__/modlunit/version.cpp.o
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[555/1744] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/lex.cpp.o
[556/1744] Building CXX object src/nrniv/CMakeFiles/modlunit.dir/modlunit_generated/parse1.cpp.o
[557/1744] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/discrete.cpp.o
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[561/1744] Linking CXX static library lib/libutil.a
[562/1744] -- NMODL : GENERATING NMODL LEXER WITH FLEX! --
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[563/1744] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! --
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[565/1744] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/init.cpp.o
[566/1744] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! --
../../../../../external/nmodl/src/lexer/diffeq.ll:100: warning, -s option given but default rule can be matched
[567/1744] -- NMODL : GENERATING C(11) LEXER WITH FLEX! --
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../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched
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[570/1744] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/io.cpp.o
[571/1744] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/list.cpp.o
[572/1744] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/noccout.cpp.o
[573/1744] Linking CXX static library lib/libcoreneuron-core.a
[574/1744] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/kinetic.cpp.o
[575/1744] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/nocpout.cpp.o
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[669/1744] Generating nrniv_python_script.py_error/assert_false.py
[670/1744] Generating nrniv_python_script.py/do_nothing.py
[671/1744] Generating nrniv_python_script.py_twice/assert_false.py
[672/1744] Generating nrniv_python_script.py_twice/do_nothing.py
[673/1744] Building CXX object src/nrnpython/CMakeFiles/rxdmath.dir/rxdmath.cpp.o
[674/1744] Generating nrniv_python_script.py_args/assert_last_args_are_foo_and_bar.py
[675/1744] Generating nrniv_py3.10_python_check_sys_path/check_sys_attr.py
[676/1744] Generating nrniv_py3.10_python_check_sys_path/dump_sys_attr.py
[677/1744] Generating nrniv_py3.10_nrnpython_check_sys_path/check_sys_attr.hoc
[678/1744] Generating nrniv_py3.10_nrnpython_check_sys_path/dump_sys_attr.py
[679/1744] Generating nrniv_py3.10_python_check_sys_prefix/check_sys_attr.py
[680/1744] Generating nrniv_py3.10_python_check_sys_prefix/dump_sys_attr.py
[681/1744] Generating nrniv_py3.10_nrnpython_check_sys_prefix/check_sys_attr.hoc
[682/1744] Generating nrniv_py3.10_python_check_sys_exec_prefix/check_sys_attr.py
[683/1744] Generating nrniv_py3.10_nrnpython_check_sys_prefix/dump_sys_attr.py
[684/1744] Linking CXX shared library lib/librxdmath.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
[685/1744] Generating nrniv_py3.10_python_check_sys_exec_prefix/dump_sys_attr.py
[686/1744] Generating nrniv_py3.10_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc
[687/1744] Generating nrniv_py3.10_nrnpython_check_sys_exec_prefix/dump_sys_attr.py
[688/1744] Generating nrniv_py3.10_python_check_sys_base_prefix/check_sys_attr.py
[689/1744] Generating nrniv_py3.10_python_check_sys_base_prefix/dump_sys_attr.py
[690/1744] Generating nrniv_py3.10_nrnpython_check_sys_base_prefix/check_sys_attr.hoc
[691/1744] Generating nrniv_py3.10_nrnpython_check_sys_base_prefix/dump_sys_attr.py
[692/1744] Generating nrniv_py3.10_python_check_sys_base_exec_prefix/check_sys_attr.py
[693/1744] Generating nrniv_py3.10_python_check_sys_base_exec_prefix/dump_sys_attr.py
[694/1744] Generating nrniv_py3.10_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc
[695/1744] Generating nrniv_py3.10_nrnpython_check_sys_base_exec_prefix/dump_sys_attr.py
[696/1744] Generating nrniv_py3.10_python_check_sys_stderr.encoding/check_sys_attr.py
[697/1744] Generating nrniv_py3.10_python_check_sys_stderr.encoding/dump_sys_attr.py
[698/1744] Generating nrniv_py3.10_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc
[699/1744] Generating nrniv_py3.10_nrnpython_check_sys_stderr.encoding/dump_sys_attr.py
[700/1744] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o
[701/1744] Generating nrniv_py3.10_python_check_sys_stdin.encoding/check_sys_attr.py
[702/1744] Generating nrniv_py3.10_python_check_sys_stdin.encoding/dump_sys_attr.py
[703/1744] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc
[704/1744] Generating nrniv_py3.10_nrnpython_check_sys_stdin.encoding/dump_sys_attr.py
[705/1744] Generating nrniv_py3.10_python_check_sys_stdout.encoding/check_sys_attr.py
[706/1744] Generating nrniv_py3.10_python_check_sys_stdout.encoding/dump_sys_attr.py
[707/1744] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py
[708/1744] Generating nrniv_py3.10_nrnpython_check_sys_stdout.encoding/check_sys_attr.hoc
[709/1744] Generating nrniv_pydef_python_check_sys_path/check_sys_attr.py
[710/1744] Generating nrniv_pydef_python_check_sys_path/dump_sys_attr.py
[711/1744] Generating nrniv_pydef_nrnpython_check_sys_path/check_sys_attr.hoc
[712/1744] Generating nrniv_pydef_python_check_sys_prefix/check_sys_attr.py
[713/1744] Generating nrniv_pydef_nrnpython_check_sys_path/dump_sys_attr.py
[714/1744] Generating nrniv_pydef_python_check_sys_prefix/dump_sys_attr.py
[715/1744] Generating nrniv_pydef_nrnpython_check_sys_prefix/check_sys_attr.hoc
[716/1744] Generating nrniv_pydef_nrnpython_check_sys_prefix/dump_sys_attr.py
[717/1744] Generating nrniv_pydef_python_check_sys_exec_prefix/check_sys_attr.py
[718/1744] Generating nrniv_pydef_python_check_sys_exec_prefix/dump_sys_attr.py
[719/1744] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/check_sys_attr.hoc
[720/1744] Generating nrniv_pydef_nrnpython_check_sys_exec_prefix/dump_sys_attr.py
[721/1744] Generating nrniv_pydef_python_check_sys_base_prefix/dump_sys_attr.py
[722/1744] Generating nrniv_pydef_python_check_sys_base_prefix/check_sys_attr.py
[723/1744] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/check_sys_attr.hoc
[724/1744] Linking CXX executable bin/nocmodl
[725/1744] Generating nrniv_pydef_nrnpython_check_sys_base_prefix/dump_sys_attr.py
[726/1744] Generating nrniv_pydef_python_check_sys_base_exec_prefix/dump_sys_attr.py
[727/1744] Generating nrniv_pydef_python_check_sys_base_exec_prefix/check_sys_attr.py
[728/1744] Generating ../nrnoc/exp2syn.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp
Thread Safe
[729/1744] Generating ../nrnoc/expsyn.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/expsyn.cpp
Thread Safe
[730/1744] Generating ../nrnoc/feature.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/feature.cpp
Notice: VERBATIM blocks are not thread safe
[731/1744] Generating ../nrnoc/apcount.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/apcount.cpp
Thread Safe
[732/1744] Generating ../nrnoc/hh.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/hh.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/hh.cpp
Thread Safe
    [733/1744] Generating ../nrnoc/intfire1.cpp

Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/intfire1.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/intfire1.cpp
Thread Safe
[734/1744] Generating ../nrnoc/intfire2.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/intfire2.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/intfire2.cpp
Thread Safe
[735/1744] Generating ../nrnoc/intfire4.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/intfire4.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/intfire4.cpp
Thread Safe
[736/1744] Generating ../nrnoc/passive.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/passive.cpp
Thread Safe
[737/1744] Generating ../nrnoc/oclmp.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/oclmp.cpp
Thread Safe
[738/1744] Generating ../nrnoc/netstim.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/netstim.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[739/1744] Generating ../nrnoc/pattern.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/pattern.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
[740/1744] Generating ../nrnoc/ppmark.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/ppmark.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/ppmark.cpp
Thread Safe
[741/1744] Generating ../nrnoc/svclmp.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/svclmp.cpp
Thread Safe
[742/1744] Generating ../nrnoc/stim.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/stim.cpp
Thread Safe
[743/1744] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/check_sys_attr.hoc
[744/1744] Generating ../nrnoc/syn.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/syn.cpp
Thread Safe
[745/1744] Generating nrniv_pydef_nrnpython_check_sys_base_exec_prefix/dump_sys_attr.py
[746/1744] Generating nrniv_pydef_python_check_sys_stderr.encoding/check_sys_attr.py
[747/1744] Generating nrniv_pydef_python_check_sys_stderr.encoding/dump_sys_attr.py
[748/1744] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/check_sys_attr.hoc
[749/1744] Generating nrniv_pydef_nrnpython_check_sys_stderr.encoding/dump_sys_attr.py
[750/1744] Generating nrniv_pydef_python_check_sys_stdin.encoding/check_sys_attr.py
[751/1744] Generating nrniv_pydef_python_check_sys_stdin.encoding/dump_sys_attr.py
[752/1744] Generating nrniv_pydef_nrnpython_check_sys_stdin.encoding/check_sys_attr.hoc
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[757/1744] Generating nrniv_pydef_nrnpython_check_sys_stdout.encoding/dump_sys_attr.py
[758/1744] Generating ../../compare_test_results.py
[759/1744] Generating ../tests/ringtest/reference_data/spk1.100ms.std.ref
[760/1744] Generating ../nrnoc/vclmp.cpp
Translating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/src/nrnoc/vclmp.cpp
Notice: VERBATIM blocks are not thread safe
Notice: LINEAR is not thread safe.
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[762/1744] Generating ../tests/testcorenrn/reference/out_conc.spk
[763/1744] Generating ../tests/testcorenrn/reference/out_deriv.spk
[764/1744] Building CXX object src/nrniv/CMakeFiles/nrniv_lib.dir/__/ivoc/apwindow.cpp.o
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WARNING: No mod files found in '/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/bin', compiling default ones only!
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
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diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
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[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
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[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
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[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
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[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
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ld: warning: -undefined dynamic_lookup may not work with chained fixups
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INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:163: UserWarning: "/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
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INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron
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INFO:root:creating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/neuroml
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INFO:root:creating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
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INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
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INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
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INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:creating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/crxd
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INFO:root:creating /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/gui2
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INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:building 'neuron.hoc' extension
INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17
INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../
ld: warning: -undefined dynamic_lookup may not work with chained fixups
INFO:root:running build_scripts
INFO:root:creating build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10
INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10
INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755
INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755
INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755
INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755
INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755
INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755
INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755
[1048/1744] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/generic_data_handle.cpp.o
[1049/1744] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/container.cpp.o
[1050/1744] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/nrn/demo/release
cfiles =
Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod"

MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o
 -> Compiling mod_func.cpp
 -> NMODL ../cabpump.mod
 -> NMODL ../cachan1.mod
 -> NMODL ../camchan.mod
Translating camchan.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp
Translating cachan1.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp
Thread Safe
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Thread Safe
 -> NMODL ../capump.mod
 -> NMODL ../invlfire.mod
 -> NMODL ../khhchan.mod
Translating capump.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp
Thread Safe
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp
Thread Safe
 -> NMODL ../nacaex.mod
 -> NMODL ../nachan.mod
Translating khhchan.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp
Thread Safe
 -> NMODL ../release.mod
Translating nachan.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp
Thread Safe
Translating nacaex.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp
Thread Safe
 -> Compiling cabpump.cpp
Translating release.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp
Thread Safe
 -> Compiling cachan1.cpp
 -> Compiling camchan.cpp
 -> Compiling capump.cpp
 -> Compiling invlfire.cpp
 -> Compiling khhchan.cpp
 -> Compiling nacaex.cpp
 -> Compiling nachan.cpp
 -> Compiling release.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:         /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1051/1744] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/mechanism.cpp.o
[1052/1744] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/utils/enumerate.cpp.o
[1053/1744] Building CXX object test/coreneuron/unit/cmdline_interface/CMakeFiles/cmd_interface_test_bin.dir/test_cmdline_interface.cpp.o
[1054/1744] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/oc/hoc_interpreter.cpp.o
[1055/1744] Linking CXX executable bin/cmd_interface_test_bin
[1056/1744] Generating nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/mcna.mod
[1057/1744] Building CXX object test/coreneuron/unit/interleave_info/CMakeFiles/interleave_info_bin.dir/check_constructors.cpp.o
[1058/1744] Linking CXX executable bin/interleave_info_bin
[1059/1744] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/follower.mod
[1060/1744] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/gap.mod
[1061/1744] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/name_clashes.mod
[1062/1744] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/unitstest.mod
[1063/1744] Generating nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/version_macros.mod
[1064/1744] Building CXX object test/coreneuron/unit/alignment/CMakeFiles/alignment_test_bin.dir/alignment.cpp.o
[1065/1744] Linking CXX executable bin/alignment_test_bin
[1066/1744] Generating nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/opaque_token.mod
[1067/1744] Generating nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/ptr.mod
[1068/1744] Building CXX object test/coreneuron/unit/queueing/CMakeFiles/queuing_test_bin.dir/test_queueing.cpp.o
[1069/1744] Linking CXX executable bin/queuing_test_bin
[1070/1744] Generating nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/ppxsrc.mod
[1071/1744] Building CXX object test/coreneuron/unit/lfp/CMakeFiles/lfp_test_bin.dir/lfp.cpp.o
[1072/1744] Linking CXX executable bin/lfp_test_bin
[1073/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/argpass.mod
[1074/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cabpump.mod
[1075/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cachan.mod
[1076/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacum.mod
[1077/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cacur.mod
[1078/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadif.mod
[1079/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cadifusl.mod
[1080/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagk.mod
[1081/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/cagkftab.mod
[1082/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/capmp.mod
[1083/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/expsynspine.mod
[1084/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fh.mod
[1085/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/fit1.mod
[1086/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/gap.mod
[1087/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hh1.mod
[1088/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/hhvect.mod
[1089/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/inatest.mod
[1090/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/ionleak.mod
[1091/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacum.mod
[1092/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nacur.mod
[1093/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nadifl.mod
[1094/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/nonlin.mod
[1095/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/obj_ex.mod
[1096/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/order.mod
[1097/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/passiv.mod
[1098/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/rchan.mod
[1099/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/standard.inc
[1100/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/stim1.mod
[1101/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/str.mod
[1102/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/syn1.mod
[1103/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/synpre.mod
[1104/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/trivial.mod
[1105/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstdarray.mod
[1106/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstextrn.mod
[1107/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt1.mod
[1108/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstpnt2.mod
[1109/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/tstvec.mod
[1110/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vclmp1.mod
[1111/1744] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vlag.mod
[1112/1744] Building special[-core] for test group datahandle
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453
cfiles =
Mod files: "./opaque_token.mod" "./ptr.mod"

MODOBJS= ./opaque_token.o ./ptr.o
 -> NMODL .././opaque_token.mod
 -> Compiling mod_func.cpp
 -> NMODL .././ptr.mod
Translating opaque_token.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp
Notice: VERBATIM blocks are not thread safe
Translating ptr.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp
Notice: Use of POINTER is not thread safe.
 -> Compiling opaque_token.cpp
 -> Compiling ptr.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:         /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1113/1744] Generating datahandle/datahandle_tests/test/datahandle/test_1.py
[1114/1744] Generating datahandle/datahandle_tests/test/datahandle/test_token.py
[1115/1744] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/atest.mod
[1116/1744] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata.inc
[1117/1744] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata.mod
[1118/1744] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_pp.mod
[1119/1744] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_ppts.mod
[1120/1744] Generating nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/sdata_ts.mod
[1121/1744] Building special[-core] for test group pytest
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c
cfiles =
Mod files: "./mcna.mod"

MODOBJS= ./mcna.o
 -> Compiling mod_func.cpp
 -> NMODL .././mcna.mod
Translating mcna.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp
Thread Safe
 -> Compiling mcna.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:         /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1122/1744] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.json
[1123/1744] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py
[1124/1744] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/follower.mod
[1125/1744] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/gap.mod
[1126/1744] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/name_clashes.mod
[1127/1744] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/unitstest.mod
[1128/1744] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/version_macros.mod
[1129/1744] Building special[-core] for test group coverage_tests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51
cfiles =
Mod files: "./ppxsrc.mod"

MODOBJS= ./ppxsrc.o
 -> Compiling mod_func.cpp
 -> NMODL .././ppxsrc.mod
Translating ppxsrc.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp
Thread Safe
 -> Compiling ppxsrc.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:         /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1130/1744] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json
[1131/1744] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py
[1132/1744] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod
[1133/1744] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod
[1134/1744] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod
[1135/1744] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod
[1136/1744] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod
[1137/1744] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod
[1138/1744] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod
[1139/1744] Building CXX object test/coreneuron/unit/solver/CMakeFiles/test-solver.dir/test_solver.cpp.o
[1140/1744] Linking CXX executable bin/test-solver
[1141/1744] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial.inc
[1142/1744] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial.mod
[1143/1744] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/axial_pp.mod
[1144/1744] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/bacur.mod
[1145/1744] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/banocur.mod
[1146/1744] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/fornetcon.mod
[1147/1744] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/invlfire.mod
[1148/1744] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/natrans.mod
[1149/1744] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/netmove.mod
[1150/1744] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/sample.mod
[1151/1744] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/unitstest.mod
[1152/1744] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/version_macros.mod
[1153/1744] Generating nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/watchrange.mod
[1154/1744] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/benchmarks/threads/test_multicore.cpp.o
[1155/1744] Building CXX object test/CMakeFiles/testneuron.dir/unit_tests/container/node.cpp.o
[1156/1744] Building CXX object test/api/CMakeFiles/hh_sim_cpp.dir/hh_sim.cpp.o
[1157/1744] Linking CXX executable bin/test/hh_sim_cpp
[1158/1744] Building special[-core] for test group parallel
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"

MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
 -> Compiling mod_func.cpp
 -> NMODL .././follower.mod
 -> NMODL .././gap.mod
 -> NMODL .././name_clashes.mod
Translating follower.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp
Thread Safe
 -> NMODL .././unitstest.mod
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp
Thread Safe
Translating gap.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp
Thread Safe
 -> NMODL .././version_macros.mod
 -> Compiling follower.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp
Thread Safe
 -> Compiling gap.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp
Thread Safe
 -> Compiling name_clashes.cpp
 -> Compiling unitstest.cpp
 -> Compiling version_macros.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:         /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1159/1744] Generating parallel/subworld/test/parallel_tests/test_subworld.py
[1160/1744] Generating parallel/partrans/test/pytest_coreneuron/test_partrans.py
[1161/1744] Generating parallel/netpar/test/pytest_coreneuron/test_hoc_po.py
[1162/1744] Generating parallel/netpar/test/pytest_coreneuron/test_netpar.py
[1163/1744] Generating parallel/bas/test/parallel_tests/test_bas.py
[1164/1744] Generating parallel/nrntest_fast/test/pytest_coreneuron/run_pytest.py
[1165/1744] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.json
[1166/1744] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.py
[1167/1744] Building C object test/api/CMakeFiles/sections_c.dir/sections.c.o
[1168/1744] Building special[-core] for test group hoctests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f
cfiles =
Mod files: "./atest.mod" "./sdata.mod" "./sdata_pp.mod" "./sdata_ppts.mod" "./sdata_ts.mod"

MODOBJS= ./atest.o ./sdata.o ./sdata_pp.o ./sdata_ppts.o ./sdata_ts.o
 -> Compiling mod_func.cpp
 -> NMODL .././atest.mod
 -> NMODL .././sdata.mod
 -> NMODL .././sdata_pp.mod
Translating sdata.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata.cpp
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
Translating sdata_pp.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_pp.cpp
INCLUDEing sdata.inc
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././sdata_ppts.mod
Translating atest.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/atest.cpp
Thread Safe
 -> NMODL .././sdata_ts.mod
 -> Compiling atest.cpp
Translating sdata_ppts.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_ppts.cpp
INCLUDEing sdata.inc
Thread Safe
 -> Compiling sdata.cpp
Translating sdata_ts.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/9dd02278b0e431bad340bd82da603803632bc7acfce27d1f6b829b5bd260004f/arm64/sdata_ts.cpp
INCLUDEing sdata.inc
Thread Safe
 -> Compiling sdata_pp.cpp
 -> Compiling sdata_ppts.cpp
 -> Compiling sdata_ts.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:         /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1169/1744] Linking CXX executable bin/test/sections_c
[1170/1744] Generating hoctests/test_loadbal_hoc/expect_err.hoc
[1171/1744] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc
[1172/1744] Generating hoctests/perf1_hoc/expect_err.hoc
[1173/1744] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc
[1174/1744] Generating hoctests/test1_hoc/expect_err.hoc
[1175/1744] Generating hoctests/test1_hoc/vardimtests/test1.hoc
[1176/1744] Generating hoctests/test2_hoc/expect_err.hoc
[1177/1744] Generating hoctests/test2_hoc/vardimtests/test2.hoc
[1178/1744] Generating hoctests/test3_hoc/expect_err.hoc
[1179/1744] Generating hoctests/test3_hoc/vardimtests/test3.hoc
[1180/1744] Generating hoctests/test4_hoc/expect_err.hoc
[1181/1744] Generating hoctests/test4_hoc/vardimtests/test4.hoc
[1182/1744] Generating hoctests/test5_hoc/expect_err.hoc
[1183/1744] Generating hoctests/test5_hoc/vardimtests/test5.hoc
[1184/1744] Generating hoctests/test6_hoc/expect_err.hoc
[1185/1744] Generating hoctests/test6_hoc/vardimtests/test6.hoc
[1186/1744] Generating hoctests/test7_hoc/expect_err.hoc
[1187/1744] Generating hoctests/test7_hoc/vardimtests/test7.hoc
[1188/1744] Generating hoctests/test8_hoc/expect_err.hoc
[1189/1744] Generating hoctests/test8_hoc/vardimtests/test8.hoc
[1190/1744] Generating hoctests/test9_hoc/expect_err.hoc
[1191/1744] Generating hoctests/test9_hoc/vardimtests/test9.hoc
[1192/1744] Generating hoctests/test_cvinterp_py/tests/test_cvinterp.py
[1193/1744] Generating hoctests/test_kschan_py/tests/test_kschan.json
[1194/1744] Generating hoctests/test_hocGUI2_py/tests/test_hocGUI2.py
[1195/1744] Generating hoctests/test_kschan_py/tests/test_kschan.py
[1196/1744] Generating hoctests/test_mechfunc_py/tests/test_mechfunc.py
[1197/1744] Generating hoctests/test_mode_py/tests/test_mode.py
[1198/1744] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json
[1199/1744] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py
[1200/1744] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py
[1201/1744] Generating hoctests/test_setdata_py/tests/test_setdata.py
[1202/1744] Generating hoctests/test_shape_py/tests/test_shape.py
[1203/1744] Generating hoctests/test_thread_partition_py/tests/test_thread_partition.py
[1204/1744] Generating hoctests/test1_py/vardimtests/test1.py
[1205/1744] Generating hoctests/test2_py/vardimtests/test2.py
[1206/1744] Generating hoctests/test9_py/vardimtests/test9.py
[1207/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod
[1208/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod
[1209/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod
[1210/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod
[1211/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod
[1212/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod
[1213/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod
[1214/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod
[1215/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod
[1216/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod
[1217/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod
[1218/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod
[1219/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod
[1220/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod
[1221/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod
[1222/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod
[1223/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod
[1224/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod
[1225/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod
[1226/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod
[1227/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod
[1228/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod
[1229/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod
[1230/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod
[1231/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod
[1232/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod
[1233/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod
[1234/1744] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod
[1235/1744] Building CXX object test/api/CMakeFiles/netcon_cpp.dir/netcon.cpp.o
[1236/1744] Linking CXX executable bin/test/netcon_cpp
[1237/1744] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod
[1238/1744] Building special[-core] for test group nmodl_tests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5
cfiles =
Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod"

MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o
 -> Compiling mod_func.cpp
 -> NMODL .././cadif.mod
 -> NMODL .././disc.mod
 -> NMODL .././fornetcon.mod
Translating cadif.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp
Thread Safe
Thread Safe
 -> NMODL .././hhwatch.mod
 -> NMODL .././k3st.mod
Translating disc.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp
Notice: DISCRETE is not thread safe.
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././table.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp
Thread Safe
Translating table.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp
Thread Safe
 -> NMODL .././variabletypes.mod
 -> Compiling cadif.cpp
Translating k3st.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp
NEURON's CVode method ignores conservation
Thread Safe
 -> Compiling disc.cpp
Translating variabletypes.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp
Thread Safe
 -> Compiling fornetcon.cpp
 -> Compiling hhwatch.cpp
 -> Compiling k3st.cpp
 -> Compiling table.cpp
 -> Compiling variabletypes.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:         /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1239/1744] Generating nmodl_tests/test_table/test/nmodl/test_table.py
[1240/1744] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py
[1241/1744] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py
[1242/1744] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py
[1243/1744] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py
[1244/1744] Building CXX object test/api/CMakeFiles/vclamp_cpp.dir/vclamp.cpp.o
[1245/1744] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py
[1246/1744] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py
[1247/1744] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py
[1248/1744] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod
[1249/1744] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod
[1250/1744] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod
[1251/1744] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod
[1252/1744] Linking CXX executable bin/test/vclamp_cpp
[1253/1744] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod
[1254/1744] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod
[1255/1744] Generating ../tests/testcorenrn/reference/out_gf.spk
[1256/1744] Generating ../tests/testcorenrn/reference/out_kin.spk
[1257/1744] Generating ../tests/testcorenrn/reference/out_patstim.spk
[1258/1744] Generating ../tests/testcorenrn/reference/out_vecplay.spk
[1259/1744] Generating ../tests/testcorenrn/reference/out_vecevent.spk
[1260/1744] Generating ../tests/testcorenrn/reference/out_watch.spk
[1261/1744] Generating ../tests/testcorenrn/reference/out_netstimdirect.spk
[1262/1744] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfire.mod
[1263/1744] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfiresha.mod
[1264/1744] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfirestats.mod
[1265/1744] Building special[-core] for test group pytest_coreneuron
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0
cfiles =
Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod"

MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/follower.mod
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/gap.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/name_clashes.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././gap.mod
 -> NMODL .././follower.mod
 -> NMODL .././name_clashes.mod
Translating gap.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp
Translating follower.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp
Thread Safe
Thread Safe
 -> NMODL .././unitstest.mod
 -> NMODL .././version_macros.mod
Translating name_clashes.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp
Thread Safe
 -> Compiling follower.cpp
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp
Thread Safe
 -> Compiling gap.cpp
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp
Thread Safe
 -> Compiling name_clashes.cpp
 -> Compiling unitstest.cpp
 -> Compiling version_macros.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:         /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1266/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/gui_pycallobject.py
[1267/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/run_pytest.py
[1268/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_a_neuronoptions.py
[1269/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py
[1270/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_bbss.py
[1271/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_fast_imem.py
[1272/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_hoc_po.py
[1273/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_inheritance.py
[1274/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_loadbal.py
[1275/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_memory_usage.py
[1276/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_multigid.py
[1277/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_netpar.py
[1278/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nlayer.py
[1279/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrnste.py
[1280/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.json
[1281/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.py
[1282/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_partrans.py
[1283/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_py2nrnstring.py
[1284/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pycallobject.py
[1285/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pyobj.py
[1286/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_swc.py
[1287/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_template_err.py
[1288/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_vector_api.py
[1289/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_version_macros.py
[1290/1744] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_zptrlist.py
[1291/1744] Building CXX object test/CMakeFiles/testneuron.dir/common/catch2_main.cpp.o
[1292/1744] Linking CXX executable bin/test/testneuron
[1293/1744] Building special[-core] for test group external_ringtest
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff
cfiles =
Mod files: "./halfgap.mod"

MODOBJS= ./halfgap.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/halfgap.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././halfgap.mod
Translating halfgap.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp
Thread Safe
 -> Compiling halfgap.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:         /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1294/1744] Generating ../../external_ringtest/neuron/args.py
[1295/1744] Generating ../../external_ringtest/neuron/cell.hoc
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[1298/1744] Generating ../../external_ringtest/neuron/ranparm.py
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[1300/1744] Generating ../../external_ringtest/neuron/ringtest.py
[1301/1744] Generating ../../external_ringtest/neuron/ringuniform.py
[1302/1744] Generating ../../external_ringtest/neuron/settings.py
[1303/1744] Generating ../../external_ringtest/neuron_mpi/cell.hoc
[1304/1744] Generating ../../external_ringtest/neuron_mpi/args.py
[1305/1744] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc
[1306/1744] Generating ../../external_ringtest/neuron_mpi/commonutils.py
[1307/1744] Generating ../../external_ringtest/neuron_mpi/ranparm.py
[1308/1744] Generating ../../external_ringtest/neuron_mpi/ring.py
[1309/1744] Generating ../../external_ringtest/neuron_mpi/ringtest.py
[1310/1744] Generating ../../external_ringtest/neuron_mpi/ringuniform.py
[1311/1744] Generating ../../external_ringtest/neuron_mpi/settings.py
[1312/1744] Generating ../../external_ringtest/neuron_mpi_python/args.py
[1313/1744] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc
[1314/1744] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc
[1315/1744] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py
[1316/1744] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py
[1317/1744] Generating ../../external_ringtest/neuron_mpi_python/ring.py
[1318/1744] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py
[1319/1744] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py
[1320/1744] Generating ../../external_ringtest/neuron_mpi_python/settings.py
[1321/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py
[1322/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc
[1323/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc
[1324/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py
[1325/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py
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[1328/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py
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[1330/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py
[1331/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc
[1332/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc
[1333/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py
[1334/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py
[1335/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py
[1336/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py
[1337/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py
[1338/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py
[1339/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py
[1340/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc
[1341/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc
[1342/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py
[1343/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py
[1344/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py
[1345/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py
[1346/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py
[1347/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py
[1348/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py
[1349/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc
[1350/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc
[1351/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py
[1352/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py
[1353/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py
[1354/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py
[1355/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py
[1356/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py
[1357/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py
[1358/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc
[1359/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py
[1360/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc
[1361/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py
[1362/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py
[1363/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py
[1364/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py
[1365/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py
[1366/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py
[1367/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc
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[1371/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py
[1372/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py
[1373/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py
[1374/1744] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py
[1375/1744] Building special[-core] for test group tqperf
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951
cfiles =
Mod files: "./invlfire.mod" "./invlfiresha.mod" "./invlfirestats.mod"

MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build INCFLAGS=-I/opt/homebrew/Cellar/openssl@3/3.2.0_1/include LINKFLAGS=/opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfire.mod
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfiresha.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfirestats.mod
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [warning] :: Can not inline function call to specify_invl
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
arm64/corenrn/mod2c/invlfiresha.cpp:308:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Init((SHA_CTX*)(*ctx));
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
arm64/corenrn/mod2c/invlfiresha.cpp:313:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Update((SHA_CTX*)ctx, data, len);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
arm64/corenrn/mod2c/invlfiresha.cpp:324:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Final(u.md, (SHA_CTX*)ctx);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
3 warnings generated.
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././invlfire.mod
 -> NMODL .././invlfiresha.mod
 -> NMODL .././invlfirestats.mod
Translating invlfirestats.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp
Translating invlfiresha.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling invlfire.cpp
 -> Compiling invlfiresha.cpp
 -> Compiling invlfirestats.cpp
invlfiresha.cpp:358:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Init((SHA_CTX*)(*ctx));
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
invlfiresha.cpp:363:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Update((SHA_CTX*)ctx, data, len);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
invlfiresha.cpp:374:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations]
  int status = SHA1_Final(u.md, (SHA_CTX*)ctx);
               ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here
OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c);
^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0'
#   define OSSL_DEPRECATEDIN_3_0                OSSL_DEPRECATED(3.0)
                                                ^
/opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED'
#     define OSSL_DEPRECATED(since) __attribute__((deprecated))
                                                   ^
3 warnings generated.
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:    /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib     /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1376/1744] Generating ../../tqperf/coreneuron_special/extracell.hoc
[1377/1744] Generating ../../tqperf/coreneuron_special/init.hoc
[1378/1744] Generating ../../tqperf/coreneuron_special/invl.hoc
[1379/1744] Generating ../../tqperf/coreneuron_special/mosinit.hoc
[1380/1744] Generating ../../tqperf/coreneuron_special/movie.hoc
[1381/1744] Generating ../../tqperf/coreneuron_special/net.hoc
[1382/1744] Generating ../../tqperf/coreneuron_special/param.hoc
[1383/1744] Generating ../../tqperf/coreneuron_special/perfrun.hoc
[1384/1744] Generating ../../tqperf/coreneuron_special/pltq.hoc
[1385/1744] Generating ../../tqperf/coreneuron_special/randist.hoc
[1386/1744] Generating ../../tqperf/coreneuron_special/run.hoc
[1387/1744] Generating ../../tqperf/coreneuron_special/run128.hoc
[1388/1744] Generating ../../tqperf/coreneuron_special/runs.hoc
[1389/1744] Generating ../../tqperf/coreneuron_special/spike2file.hoc
[1390/1744] Generating ../../tqperf/coreneuron_special/table.hoc
[1391/1744] Generating ../../tqperf/coreneuron_special/spkplt.hoc
[1392/1744] Generating ../../tqperf/coreneuron_special/test1.py
[1393/1744] Generating ../../tqperf/coreneuron_special/tperf.hoc
[1394/1744] Generating ../../tqperf/coreneuron_special/tperfnew.hoc
[1395/1744] Generating ../../tqperf/coreneuron_python/extracell.hoc
[1396/1744] Generating ../../tqperf/coreneuron_python/invl.hoc
[1397/1744] Generating ../../tqperf/coreneuron_python/init.hoc
[1398/1744] Generating ../../tqperf/coreneuron_python/mosinit.hoc
[1399/1744] Generating ../../tqperf/coreneuron_python/movie.hoc
[1400/1744] Generating ../../tqperf/coreneuron_python/net.hoc
[1401/1744] Generating ../../tqperf/coreneuron_python/param.hoc
[1402/1744] Generating ../../tqperf/coreneuron_python/perfrun.hoc
[1403/1744] Generating ../../tqperf/coreneuron_python/pltq.hoc
[1404/1744] Generating ../../tqperf/coreneuron_python/randist.hoc
[1405/1744] Generating ../../tqperf/coreneuron_python/run.hoc
[1406/1744] Generating ../../tqperf/coreneuron_python/run128.hoc
[1407/1744] Generating ../../tqperf/coreneuron_python/runs.hoc
[1408/1744] Generating ../../tqperf/coreneuron_python/spike2file.hoc
[1409/1744] Generating ../../tqperf/coreneuron_python/spkplt.hoc
[1410/1744] Generating ../../tqperf/coreneuron_python/table.hoc
[1411/1744] Generating ../../tqperf/coreneuron_python/test1.py
[1412/1744] Generating ../../tqperf/coreneuron_python/tperf.hoc
[1413/1744] Generating ../../tqperf/coreneuron_python/tperfnew.hoc
[1414/1744] Building special[-core] for test group coreneuron_modtests
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30
cfiles =
Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod"

MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./invlfire.o ./natrans.o ./netmove.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/axial_pp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/axial.mod
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/bacur.mod
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/banocur.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/fornetcon.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/invlfire.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/natrans.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netmove.mod
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/sample.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/unitstest.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/version_macros.mod
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/watchrange.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././axial.mod
 -> NMODL .././axial_pp.mod
 -> NMODL .././bacur.mod
Translating bacur.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/bacur.cpp
Translating axial_pp.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/axial_pp.cpp
Thread Safe
Translating axial.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/axial.cpp
INCLUDEing axial.inc
Thread Safe
INCLUDEing axial.inc
Thread Safe
 -> NMODL .././banocur.mod
 -> NMODL .././fornetcon.mod
 -> NMODL .././invlfire.mod
Translating banocur.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/banocur.cpp
Translating fornetcon.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/fornetcon.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Thread Safe
Translating invlfire.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/invlfire.cpp
Thread Safe
 -> NMODL .././natrans.mod
 -> NMODL .././netmove.mod
 -> NMODL .././sample.mod
Translating netmove.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/netmove.cpp
Thread Safe
Translating natrans.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/natrans.cpp
Thread Safe
 -> NMODL .././unitstest.mod
Translating sample.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/sample.cpp
 -> NMODL .././version_macros.mod
Thread Safe
 -> NMODL .././watchrange.mod
Translating unitstest.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/unitstest.cpp
Thread Safe
Translating version_macros.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/version_macros.cpp
Thread Safe
 -> Compiling axial.cpp
 -> Compiling axial_pp.cpp
Translating watchrange.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b23116150a9073cba36948776db2dbb9b3e2cc88ca30088010945f6636148b30/arm64/watchrange.cpp
Thread Safe
 -> Compiling bacur.cpp
 -> Compiling banocur.cpp
 -> Compiling fornetcon.cpp
 -> Compiling invlfire.cpp
 -> Compiling natrans.cpp
 -> Compiling netmove.cpp
 -> Compiling sample.cpp
 -> Compiling unitstest.cpp
 -> Compiling version_macros.cpp
 -> Compiling watchrange.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:         /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1415/1744] Generating coreneuron_modtests/version_macros/test/pytest_coreneuron/test_version_macros.py
[1416/1744] Generating coreneuron_modtests/inputpresyn_py/test/coreneuron/test_inputpresyn.py
[1417/1744] Generating coreneuron_modtests/fornetcon_py_cpu/test/coreneuron/test_fornetcon.py
[1418/1744] Generating coreneuron_modtests/direct_py_cpu/test/coreneuron/test_direct.py
[1419/1744] Generating coreneuron_modtests/direct_hoc_cpu/test/coreneuron/test_direct.hoc
[1420/1744] Generating coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.py
[1421/1744] Generating coreneuron_modtests/fast_imem_py_cpu/test/pytest_coreneuron/test_fast_imem.py
[1422/1744] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1423/1744] Generating coreneuron_modtests/datareturn_py_cpu/test/coreneuron/test_datareturn.py
[1424/1744] Generating coreneuron_modtests/test_units_py_cpu/test/coreneuron/test_units.py
[1425/1744] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py
[1426/1744] Generating coreneuron_modtests/test_pointer_py_cpu/test/coreneuron/test_pointer.py
[1427/1744] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py
[1428/1744] Generating coreneuron_modtests/test_psolve_py_cpu/test/coreneuron/test_psolve.py
[1429/1744] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py
[1430/1744] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py
[1431/1744] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py
[1432/1744] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py
[1433/1744] Building special[-core] for test group testcorenrn_bbcore
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876
cfiles =
Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod"

MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhderiv.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhkin.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [info] :: Parsing Units
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [warning] :: Can not inline function call to mynormrand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Automatically enable sympy_analytic because it exists solver of type sparse
[NMODL] [info] :: Running sympy solve visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hhwatch.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/nacum.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> Compiling mod_func.cpp
 -> NMODL .././Gfluct3.mod
 -> NMODL .././hhderiv.mod
 -> NMODL .././hhkin.mod
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp
Thread Safe
Translating hhkin.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp
Translating hhderiv.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp
Thread Safe
Thread Safe
 -> NMODL .././hhwatch.mod
 -> NMODL .././nacum.mod
 -> NMODL .././vecevent.mod
Translating hhwatch.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp
Thread Safe
Translating nacum.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp
Thread Safe
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling Gfluct3.cpp
 -> Compiling hhderiv.cpp
 -> Compiling hhkin.cpp
 -> Compiling hhwatch.cpp
 -> Compiling nacum.cpp
 -> Compiling vecevent.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:         /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1434/1744] Generating ../../testcorenrn_bbcore/neuron/common.hoc
[1435/1744] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc
[1436/1744] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc
[1437/1744] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc
[1438/1744] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc
[1439/1744] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc
[1440/1744] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc
[1441/1744] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc
[1442/1744] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1443/1744] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc
[1444/1744] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc
[1445/1744] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc
[1446/1744] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc
[1447/1744] Generating ../../testcorenrn_conc/neuron/common.hoc
[1448/1744] Generating ../../testcorenrn_conc/neuron/defvar.hoc
[1449/1744] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc
[1450/1744] Generating ../../testcorenrn_conc/neuron/testconc.hoc
[1451/1744] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc
[1452/1744] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc
[1453/1744] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1454/1744] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc
[1455/1744] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc
[1456/1744] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc
[1457/1744] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc
[1458/1744] Generating ../../testcorenrn_deriv/neuron/common.hoc
[1459/1744] Generating ../../testcorenrn_deriv/neuron/defvar.hoc
[1460/1744] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc
[1461/1744] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc
[1462/1744] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc
[1463/1744] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc
[1464/1744] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc
[1465/1744] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc
[1466/1744] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1467/1744] Generating ../../testcorenrn_gf/neuron/common.hoc
[1468/1744] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc
[1469/1744] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc
[1470/1744] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc
[1471/1744] Generating ../../testcorenrn_gf/neuron/testgf.hoc
[1472/1744] Generating ../../testcorenrn_gf/neuron/defvar.hoc
[1473/1744] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc
[1474/1744] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc
[1475/1744] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc
[1476/1744] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc
[1477/1744] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc
[1478/1744] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1479/1744] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc
[1480/1744] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc
[1481/1744] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc
[1482/1744] Generating ../../testcorenrn_kin/neuron/common.hoc
[1483/1744] Generating ../../testcorenrn_kin/neuron/defvar.hoc
[1484/1744] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc
[1485/1744] Generating ../../testcorenrn_kin/neuron/testkin.hoc
[1486/1744] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc
[1487/1744] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc
[1488/1744] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc
[1489/1744] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc
[1490/1744] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1491/1744] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc
[1492/1744] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc
[1493/1744] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc
[1494/1744] Generating ../../testcorenrn_patstim/neuron/defvar.hoc
[1495/1744] Generating ../../testcorenrn_patstim/neuron/common.hoc
[1496/1744] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc
[1497/1744] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc
[1498/1744] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc
[1499/1744] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc
[1500/1744] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc
[1501/1744] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc
[1502/1744] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc
[1503/1744] Generating ../../testcorenrn_vecplay/neuron/common.hoc
[1504/1744] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc
[1505/1744] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc
[1506/1744] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc
[1507/1744] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc
[1508/1744] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc
[1509/1744] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1510/1744] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/common.hoc
[1511/1744] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc
[1512/1744] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc
[1513/1744] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc
[1514/1744] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc
[1515/1744] Generating ../../testcorenrn_vecevent/neuron/common.hoc
[1516/1744] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc
[1517/1744] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc
[1518/1744] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc
[1519/1744] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc
[1520/1744] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc
[1521/1744] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1522/1744] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc
[1523/1744] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc
[1524/1744] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc
[1525/1744] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc
[1526/1744] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc
[1527/1744] Generating ../../testcorenrn_watch/neuron/common.hoc
[1528/1744] Generating ../../testcorenrn_watch/neuron/defvar.hoc
[1529/1744] Generating ../../testcorenrn_watch/neuron/testwatch.hoc
[1530/1744] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc
[1531/1744] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc
[1532/1744] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc
[1533/1744] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc
[1534/1744] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc
[1535/1744] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc
[1536/1744] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc
[1537/1744] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc
[1538/1744] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc
[1539/1744] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc
[1540/1744] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc
[1541/1744] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc
[1542/1744] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc
[1543/1744] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc
[1544/1744] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc
[1545/1744] Building special[-core] for test group example_nmodl
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2
cfiles =
Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod"

MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o
 -> Compiling mod_func.cpp
 -> NMODL .././argpass.mod
 -> NMODL .././cabpump.mod
 -> NMODL .././cachan.mod
Translating cachan.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp
Thread Safe
Translating cabpump.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp
Translating argpass.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp
Notice: VERBATIM blocks are not thread safe
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
 -> NMODL .././cacum.mod
 -> NMODL .././cadif.mod
 -> NMODL .././cacur.mod
Translating cacur.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp
Thread Safe
Translating cadif.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp
Translating cacum.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp
Thread Safe
Thread Safe
 -> NMODL .././cadifusl.mod
 -> NMODL .././cagk.mod
 -> NMODL .././cagkftab.mod
Translating cagk.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp
Thread Safe
Translating cadifusl.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp
Notice: Assignment to the GLOBAL variable, "vol", is not thread safe
Translating cagkftab.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp
Thread Safe
 -> NMODL .././capmp.mod
 -> NMODL .././expsynspine.mod
 -> NMODL .././fh.mod
Translating expsynspine.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp
Notice: LINEAR is not thread safe.
Translating fh.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp
Translating capmp.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp
INCLUDEing standard.inc
NEURON's CVode method ignores conservation
Notice: Assignment to the GLOBAL variable, "inf", is not thread safe
Notice: Assignment to the GLOBAL variable, "tau", is not thread safe
Thread Safe
 -> NMODL .././fit1.mod
 -> NMODL .././gap.mod
 -> NMODL .././hh1.mod
Translating fit1.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp
Notice: VERBATIM blocks are not thread safe
 -> NMODL .././hhvect.mod
Translating hh1.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp
Notice: This mechanism cannot be used with CVODE
Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe
Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "minf", is not thread safe
Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe
Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
 -> NMODL .././inatest.mod
Translating gap.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp
Notice: Use of POINTER is not thread safe.
 -> NMODL .././ionleak.mod
Translating hhvect.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp
Notice: This mechanism cannot be used with CVODE
Thread Safe
Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON.
Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON.
Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON.
 -> NMODL .././nacum.mod
Translating inatest.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp
Thread Safe
Translating ionleak.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp
Thread Safe
 -> NMODL .././nacur.mod
 -> NMODL .././nadifl.mod
Translating nacum.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp
Thread Safe
 -> NMODL .././nonlin.mod
Translating nadifl.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp
Thread Safe
Translating nacur.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp
Thread Safe
 -> NMODL .././obj_ex.mod
 -> NMODL .././order.mod
Translating nonlin.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp
Notice: NONLINEAR is not thread safe.
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> NMODL .././passiv.mod
Translating obj_ex.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp
Thread Safe
Translating order.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp
Thread Safe
 -> NMODL .././rchan.mod
 -> NMODL .././stim1.mod
Translating passiv.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp
Thread Safe
 -> NMODL .././str.mod
Translating stim1.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp
Thread Safe
 -> NMODL .././syn1.mod
Translating rchan.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp
Notice: normrand is not thread safe
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././synpre.mod
Translating syn1.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp
Translating str.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp
Notice: VERBATIM blocks are not thread safe
Thread Safe
 -> NMODL .././trivial.mod
 -> NMODL .././tstdarray.mod
Translating synpre.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp
Notice: Use of POINTER is not thread safe.
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
 -> NMODL .././tstextrn.mod
Translating tstdarray.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp
Thread Safe
 -> NMODL .././tstpnt1.mod
Translating trivial.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp
 -> NMODL .././tstpnt2.mod
Translating tstextrn.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp
Notice: Use of EXTERNAL is not thread safe.
 -> NMODL .././tstvec.mod
Translating tstpnt1.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp
Notice: Use of POINTER is not thread safe.
 -> NMODL .././vclmp1.mod
 -> NMODL .././vlag.mod
Translating tstpnt2.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp
Notice: Use of POINTER is not thread safe.
 -> Compiling argpass.cpp
Translating vlag.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp
Thread Safe
Translating vclmp1.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp
Notice: VERBATIM blocks are not thread safe
Notice: This mechanism cannot be used with CVODE
Notice: LINEAR is not thread safe.
 -> Compiling cabpump.cpp
 -> Compiling cachan.cpp
Translating tstvec.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp
Notice: VERBATIM blocks are not thread safe
 -> Compiling cacum.cpp
 -> Compiling cacur.cpp
 -> Compiling cadif.cpp
 -> Compiling cadifusl.cpp
 -> Compiling cagk.cpp
 -> Compiling cagkftab.cpp
 -> Compiling capmp.cpp
 -> Compiling expsynspine.cpp
 -> Compiling fh.cpp
 -> Compiling fit1.cpp
 -> Compiling gap.cpp
 -> Compiling hh1.cpp
 -> Compiling hhvect.cpp
 -> Compiling inatest.cpp
 -> Compiling ionleak.cpp
 -> Compiling nacum.cpp
 -> Compiling nacur.cpp
 -> Compiling nadifl.cpp
 -> Compiling nonlin.cpp
 -> Compiling obj_ex.cpp
 -> Compiling order.cpp
 -> Compiling passiv.cpp
 -> Compiling rchan.cpp
 -> Compiling stim1.cpp
 -> Compiling str.cpp
 -> Compiling syn1.cpp
 -> Compiling synpre.cpp
 -> Compiling trivial.cpp
 -> Compiling tstdarray.cpp
 -> Compiling tstextrn.cpp
 -> Compiling tstpnt1.cpp
 -> Compiling tstpnt2.cpp
 -> Compiling tstvec.cpp
 -> Compiling vclmp1.cpp
 -> Compiling vlag.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:         /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1546/1744] Generating example_nmodl/cabpump_hoc/cabpump.hoc
[1547/1744] Generating example_nmodl/cadif_hoc/cadif.hoc
[1548/1744] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc
[1549/1744] Generating example_nmodl/cachan_hoc/cachan.hoc
[1550/1744] Generating example_nmodl/cadif_hoc/cadif.ses
[1551/1744] Generating example_nmodl/cadifusl_hoc/cadifusl.hoc
[1552/1744] Generating example_nmodl/cadifusl1_hoc/cadifusl1.hoc
[1553/1744] Generating example_nmodl/cadifusl2_hoc/cadifusl2.hoc
[1554/1744] Generating example_nmodl/cagk_hoc/cagk.hoc
[1555/1744] Generating example_nmodl/fh_hoc/fh.hoc
[1556/1744] Generating example_nmodl/cv_hoc/cv.hoc
[1557/1744] Generating example_nmodl/capmp_hoc/capmp.hoc
[1558/1744] Generating example_nmodl/gap_hoc/gap.hoc
[1559/1744] Generating example_nmodl/fit1_hoc/fit1.hoc
[1560/1744] Generating example_nmodl/hh1_hoc/hh1.hoc
[1561/1744] Generating example_nmodl/nacum_hoc/nacum.hoc
[1562/1744] Generating example_nmodl/hhvect_hoc/hhvect.hoc
[1563/1744] Generating example_nmodl/nadifl1_hoc/nadifl1.hoc
[1564/1744] Generating example_nmodl/nadifl1_hoc/nadifl1.ses
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[1568/1744] Generating example_nmodl/nadifl3_hoc/nadifl3.ses
[1569/1744] Generating example_nmodl/nadifl4_hoc/nadifl4.hoc
[1570/1744] Generating example_nmodl/nadifl4_hoc/nadifl4.ses
[1571/1744] Generating example_nmodl/obj_ex_hoc/obj_ex.hoc
[1572/1744] Generating example_nmodl/order_hoc/order.hoc
[1573/1744] Generating example_nmodl/stim1_hoc/stim1.hoc
[1574/1744] Generating example_nmodl/passiv_hoc/passiv.hoc
[1575/1744] Generating example_nmodl/syn1_hoc/syn1.hoc
[1576/1744] Generating example_nmodl/tstextrn_hoc/tstextrn.hoc
[1577/1744] Generating example_nmodl/synpre_hoc/synpre.hoc
[1578/1744] Generating example_nmodl/tstpnt1_hoc/tstpnt1.hoc
[1579/1744] Generating example_nmodl/tstvec_hoc/tstvec.hoc
[1580/1744] Generating example_nmodl/cagkftab_py/cagkftab.py
[1581/1744] Generating example_nmodl/tstpnt2_hoc/tstpnt2.hoc
[1582/1744] Generating example_nmodl/expsynspine_py/expsynspine.ses
[1583/1744] Generating example_nmodl/nonlin_py/nonlin.py
[1584/1744] Generating example_nmodl/expsynspine_py/expsynspine.py
[1585/1744] Generating example_nmodl/tstpnt2_py/tstpnt2.py
[1586/1744] Generating example_nmodl/vlag_py/vlag.py
[1587/1744] Generating example_nmodl/tstpnt1_py/tstpnt1.py
[1588/1744] Building CXX object test/CMakeFiles/nrn-benchmarks.dir/common/catch2_main.cpp.o
[1589/1744] Linking CXX executable bin/test/nrn-benchmarks
[1590/1744] Building CXX object test/api/CMakeFiles/api_unit_tests.dir/api_unit_tests.cpp.o
[1591/1744] Linking CXX executable bin/test/api_unit_tests
[1592/1744] Building special[-core] for test group reduced_dentate
/usr/bin/xcrun
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead
cfiles =
Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod"

MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o
[INFO] Running: make -j4 -f /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0
Default NMODL flags:
diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_CadepK.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KA.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Ca.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running symtab visitor
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[NMODL] [info] :: Parsing Units
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running semantic analysis visitor
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[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRf.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running STEADYSTATE visitor
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[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_Na.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Aradi_KDRs.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/CaBK.mod
[NMODL] [info] :: Running semantic analysis visitor
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[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
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[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL
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[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_UK.mod
[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_M.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/Gfluct3.mod
[NMODL] [info] :: Running symtab visitor
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[NMODL] [info] :: Running CVode to cnexp visitor
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[NMODL] [info] :: Processing arm64/corenrn/mod2c/DGC_sAHP.mod
[NMODL] [info] :: Running CVode to cnexp visitor
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[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to mynormrand
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[NMODL] [info] :: Running local variable rename visitor
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[NMODL] [info] :: Processing arm64/corenrn/mod2c/LcaMig.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
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[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
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[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL
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[NMODL] [info] :: Processing arm64/corenrn/mod2c/SH_na8st.mod
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[NMODL] [info] :: Processing arm64/corenrn/mod2c/ccanl.mod
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[NMODL] [info] :: Processing arm64/corenrn/mod2c/exp2syn.mod
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[NMODL] [info] :: Processing arm64/corenrn/mod2c/expsyn.mod
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[NMODL] [info] :: Processing arm64/corenrn/mod2c/ggap.mod
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[NMODL] [info] :: Processing arm64/corenrn/mod2c/gskch.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hh.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/holdingi.mod
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/hyperde3.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/ichan2.mod
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/iconc_Ca.mod
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/kcaPR.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/na3n.mod
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/nca.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/netstim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [warning] :: Can not inline function call to erand
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/passive.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/spines.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/pattern.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Processing arm64/corenrn/mod2c/stim.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Processing arm64/corenrn/mod2c/svclmp.mod
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/tca.mod
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Processing arm64/corenrn/mod2c/vecevent.mod
[NMODL] [info] :: Running symtab visitor
[NMODL] [info] :: Running semantic analysis visitor
[NMODL] [info] :: Running CVode to cnexp visitor
[NMODL] [info] :: Running code compatibility checker
[NMODL] [info] :: Running verbatim rename visitor
[NMODL] [info] :: Running KINETIC block visitor
[NMODL] [info] :: Running STEADYSTATE visitor
[NMODL] [info] :: Parsing Units
[NMODL] [info] :: Running nmodl inline visitor
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running local variable rename visitor
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
[NMODL] [info] :: Running cnexp visitor
[NMODL] [info] :: Running C++ backend code generator for CoreNEURON
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => Binary creating arm64/special-core
[INFO] MOD files built successfully for CoreNEURON
 -> NMODL .././Aradi_Ca.mod
 -> NMODL .././Aradi_CadepK.mod
 -> Compiling mod_func.cpp
 -> NMODL .././Aradi_KA.mod
Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp
Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp
Thread Safe
Translating Aradi_KA.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp
Thread Safe
Thread Safe
 -> NMODL .././Aradi_KDRf.mod
 -> NMODL .././Aradi_KDRs.mod
 -> NMODL .././Aradi_Na.mod
Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp
Thread Safe
Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp
Thread Safe
Translating Aradi_Na.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp
Thread Safe
 -> NMODL .././CaBK.mod
 -> NMODL .././DGC_M.mod
 -> NMODL .././DGC_UK.mod
Translating CaBK.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp
Thread Safe
Translating DGC_M.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp
Translating DGC_UK.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp
 -> NMODL .././DGC_sAHP.mod
Thread Safe
Thread Safe
 -> NMODL .././Gfluct3.mod
 -> NMODL .././LcaMig.mod
Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp
Thread Safe
Translating LcaMig.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp
Translating Gfluct3.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp
Thread Safe
 -> NMODL .././SH_KIn.mod
Thread Safe
 -> NMODL .././SH_na8st.mod
 -> NMODL .././bgka.mod
 -> NMODL .././ccanl.mod
Translating SH_KIn.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp
Thread Safe
Translating SH_na8st.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp
NEURON's CVode method ignores conservation
Translating bgka.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp
Thread Safe
Thread Safe
 -> NMODL .././ggap.mod
Translating ccanl.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp
Thread Safe
 -> NMODL .././gskch.mod
 -> NMODL .././hyperde3.mod
 -> NMODL .././holdingi.mod
Translating ggap.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp
Thread Safe
Translating gskch.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp
Thread Safe
Translating holdingi.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp
Thread Safe
 -> NMODL .././ichan2.mod
Translating hyperde3.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp
Thread Safe
 -> NMODL .././iconc_Ca.mod
 -> NMODL .././na3n.mod
 -> NMODL .././kcaPR.mod
Translating ichan2.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp
Thread Safe
Translating iconc_Ca.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp
Thread Safe
Translating na3n.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp
 -> NMODL .././nca.mod
Thread Safe
Translating kcaPR.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp
 -> NMODL .././spines.mod
Thread Safe
 -> NMODL .././tca.mod
 -> NMODL .././vecevent.mod
Translating nca.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp
Thread Safe
Translating spines.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp
Translating tca.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp
Thread Safe
Thread Safe
 -> Compiling Aradi_Ca.cpp
 -> Compiling Aradi_CadepK.cpp
Translating vecevent.mod into /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp
Thread Safe
Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it
only affects and is affected by discrete events. As such it is not
located in a section and is not associated with an integrator
 -> Compiling Aradi_KA.cpp
 -> Compiling Aradi_KDRf.cpp
 -> Compiling Aradi_KDRs.cpp
 -> Compiling Aradi_Na.cpp
 -> Compiling CaBK.cpp
 -> Compiling DGC_M.cpp
 -> Compiling DGC_UK.cpp
 -> Compiling DGC_sAHP.cpp
 -> Compiling Gfluct3.cpp
 -> Compiling LcaMig.cpp
 -> Compiling SH_KIn.cpp
 -> Compiling SH_na8st.cpp
 -> Compiling bgka.cpp
 -> Compiling ccanl.cpp
 -> Compiling ggap.cpp
 -> Compiling gskch.cpp
 -> Compiling holdingi.cpp
 -> Compiling hyperde3.cpp
 -> Compiling ichan2.cpp
 -> Compiling iconc_Ca.cpp
 -> Compiling kcaPR.cpp
 -> Compiling na3n.cpp
 -> Compiling nca.cpp
 -> Compiling spines.cpp
 -> Compiling tca.cpp
 -> Compiling vecevent.cpp
 => LINKING shared library ./libnrnmech.dylib
ld: warning: -undefined dynamic_lookup may not work with chained fixups
 => LINKING executable ./special LDFLAGS are:         /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib -Wl,-rpath,/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib
Successfully created arm64/special
[1593/1744] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat
[1594/1744] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat
[1595/1744] Generating ../../reduced_dentate/neuron/commonutils.py
[1596/1744] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat
[1597/1744] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat
[1598/1744] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat
[1599/1744] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat
[1600/1744] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat
[1601/1744] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat
[1602/1744] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat
[1603/1744] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat
[1604/1744] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat
[1605/1744] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat
[1606/1744] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat
[1607/1744] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat
[1608/1744] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat
[1609/1744] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat
[1610/1744] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat
[1611/1744] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat
[1612/1744] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat
[1613/1744] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat
[1614/1744] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat
[1615/1744] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat
[1616/1744] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat
[1617/1744] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat
[1618/1744] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat
[1619/1744] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat
[1620/1744] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat
[1621/1744] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat
[1622/1744] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat
[1623/1744] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat
[1624/1744] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat
[1625/1744] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat
[1626/1744] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat
[1627/1744] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat
[1628/1744] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat
[1629/1744] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat
[1630/1744] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat
[1631/1744] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat
[1632/1744] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat
[1633/1744] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat
[1634/1744] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat
[1635/1744] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat
[1636/1744] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat
[1637/1744] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat
[1638/1744] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat
[1639/1744] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat
[1640/1744] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat
[1641/1744] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat
[1642/1744] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat
[1643/1744] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat
[1644/1744] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat
[1645/1744] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat
[1646/1744] Generating ../../reduced_dentate/neuron/main.hoc
[1647/1744] Generating ../../reduced_dentate/neuron/parameters/Control.hoc
[1648/1744] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat
[1649/1744] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat
[1650/1744] Generating ../../reduced_dentate/neuron/lib.hoc
[1651/1744] Generating ../../reduced_dentate/neuron/run.hoc
[1652/1744] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc
[1653/1744] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc
[1654/1744] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc
[1655/1744] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc
[1656/1744] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc
[1657/1744] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc
[1658/1744] Generating ../../reduced_dentate/neuron/templates/DGC.hoc
[1659/1744] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc
[1660/1744] Generating ../../reduced_dentate/neuron/templates/Dict.hoc
[1661/1744] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc
[1662/1744] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc
[1663/1744] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc
[1664/1744] Generating ../../reduced_dentate/neuron/templates/Value.hoc
[1665/1744] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc
[1666/1744] Generating ../../reduced_dentate/neuron/templates/defvar.hoc
[1667/1744] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc
[1668/1744] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc
[1669/1744] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py
[1670/1744] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat
[1671/1744] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat
[1672/1744] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat
[1673/1744] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat
[1674/1744] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat
[1675/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat
[1676/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat
[1677/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat
[1678/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat
[1679/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat
[1680/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat
[1681/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat
[1682/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat
[1683/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat
[1684/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat
[1685/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat
[1686/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat
[1687/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat
[1688/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat
[1689/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat
[1690/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat
[1691/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat
[1692/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat
[1693/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat
[1694/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat
[1695/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat
[1696/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat
[1697/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat
[1698/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat
[1699/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat
[1700/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat
[1701/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat
[1702/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat
[1703/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat
[1704/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat
[1705/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat
[1706/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat
[1707/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat
[1708/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat
[1709/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat
[1710/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat
[1711/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat
[1712/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat
[1713/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat
[1714/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat
[1715/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat
[1716/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat
[1717/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat
[1718/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat
[1719/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat
[1720/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat
[1721/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat
[1722/1744] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc
[1723/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat
[1724/1744] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat
[1725/1744] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc
[1726/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc
[1727/1744] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc
[1728/1744] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc
[1729/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc
[1730/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc
[1731/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc
[1732/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc
[1733/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc
[1734/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc
[1735/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc
[1736/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc
[1737/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc
[1738/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc
[1739/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc
[1740/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc
[1741/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc
[1742/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc
[1743/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc
[1744/1744] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc
[32;1m$ ccache -vs 2>/dev/null[0;m
Cache directory:    /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/ccache
Config file:        /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/ccache/ccache.conf
System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf
Stats updated:      Tue Jan 30 18:53:56 2024
Cacheable calls:     514 / 514 (100.0%)
  Hits:                0 / 514 ( 0.00%)
    Direct:            0
    Preprocessed:      0
  Misses:            514 / 514 (100.0%)
Successful lookups:
  Direct:              0 / 514 ( 0.00%)
  Preprocessed:        0 / 514 ( 0.00%)
Local storage:
  Cache size (GiB):  0.4 / 5.0 ( 7.88%)
  Files:            2875
  Hits:                0 / 514 ( 0.00%)
  Misses:            514 / 514 (100.0%)
  Reads:            1028
  Writes:            959
[32;1m$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg[0;m
[32;1m$ cat src/nrnpython/setup.cfg[0;m
[install]
prefix=
[32;1m$ ctest --output-on-failure[0;m
Test project /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build
        Start 224: external_ringtest::coreneuron_cpu_mpi_offline::preparation
        Start 232: testcorenrn_bbcore::coreneuron_cpu_offline::preparation
  1/285 Test #232: testcorenrn_bbcore::coreneuron_cpu_offline::preparation ..................   Passed    1.35 sec
        Start 238: testcorenrn_conc::coreneuron_cpu_offline::preparation
  2/285 Test #238: testcorenrn_conc::coreneuron_cpu_offline::preparation ....................   Passed    0.21 sec
        Start 244: testcorenrn_deriv::coreneuron_cpu_offline::preparation
  3/285 Test #244: testcorenrn_deriv::coreneuron_cpu_offline::preparation ...................   Passed    0.20 sec
        Start 256: testcorenrn_kin::coreneuron_cpu_offline::preparation
  4/285 Test #256: testcorenrn_kin::coreneuron_cpu_offline::preparation .....................   Passed    0.22 sec
        Start 143: pyinit::nrniv_py3.10_python_check_sys_path::preparation
  5/285 Test #143: pyinit::nrniv_py3.10_python_check_sys_path::preparation ..................   Passed    0.02 sec
        Start 145: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation
  6/285 Test #145: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ...............   Passed    0.02 sec
        Start 147: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation
  7/285 Test #147: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................   Passed    0.02 sec
        Start 149: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation
  8/285 Test #149: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation .............   Passed    0.02 sec
        Start 151: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation
  9/285 Test #151: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ...........   Passed    0.02 sec
        Start 153: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation
 10/285 Test #153: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........   Passed    0.02 sec
        Start 155: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation
 11/285 Test #155: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ...........   Passed    0.02 sec
        Start 157: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation
 12/285 Test #157: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........   Passed    0.02 sec
        Start 159: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation
 13/285 Test #159: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ......   Passed    0.02 sec
        Start 161: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation
 14/285 Test #161: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ...   Passed    0.02 sec
        Start 163: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation
 15/285 Test #163: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation .......   Passed    0.02 sec
        Start 165: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation
 16/285 Test #165: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation ....   Passed    0.02 sec
        Start 167: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation
 17/285 Test #167: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........   Passed    0.02 sec
        Start 169: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation
 18/285 Test #169: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation .....   Passed    0.02 sec
        Start 171: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation
 19/285 Test #171: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation .......   Passed    0.02 sec
        Start 173: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation
 20/285 Test #224: external_ringtest::coreneuron_cpu_mpi_offline::preparation ...............   Passed    2.28 sec
        Start 250: testcorenrn_gf::coreneuron_cpu_offline::preparation
 21/285 Test #173: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation ....   Passed    0.02 sec
        Start 179: pyinit::nrniv_pydef_python_check_sys_path::preparation
 22/285 Test #179: pyinit::nrniv_pydef_python_check_sys_path::preparation ...................   Passed    0.02 sec
        Start 181: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation
 23/285 Test #181: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................   Passed    0.02 sec
        Start 183: pyinit::nrniv_pydef_python_check_sys_prefix::preparation
 24/285 Test #183: pyinit::nrniv_pydef_python_check_sys_prefix::preparation .................   Passed    0.02 sec
        Start 185: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation
 25/285 Test #185: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation ..............   Passed    0.02 sec
        Start 187: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation
 26/285 Test #187: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............   Passed    0.02 sec
        Start 189: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation
 27/285 Test #189: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation .........   Passed    0.02 sec
        Start 191: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation
 28/285 Test #191: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............   Passed    0.02 sec
        Start 193: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation
 29/285 Test #193: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation .........   Passed    0.02 sec
        Start 195: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation
 30/285 Test #195: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation .......   Passed    0.02 sec
        Start 197: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation
 31/285 Test #197: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation ....   Passed    0.02 sec
        Start 199: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation
 32/285 Test #199: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........   Passed    0.02 sec
        Start 201: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation
 33/285 Test #250: testcorenrn_gf::coreneuron_cpu_offline::preparation ......................   Passed    0.23 sec
        Start 261: testcorenrn_patstim::coreneuron_cpu_offline::preparation
 34/285 Test #201: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation .....   Passed    0.02 sec
        Start 203: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation
 35/285 Test #203: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation .........   Passed    0.02 sec
        Start 205: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation
 36/285 Test #205: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ......   Passed    0.02 sec
        Start 207: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation
 37/285 Test #207: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........   Passed    0.02 sec
        Start 209: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation
 38/285 Test #209: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation .....   Passed    0.02 sec
        Start 217: external_ringtest::neuron
 39/285 Test #261: testcorenrn_patstim::coreneuron_cpu_offline::preparation .................   Passed    0.28 sec
        Start 267: testcorenrn_vecplay::coreneuron_cpu_offline::preparation
 40/285 Test #267: testcorenrn_vecplay::coreneuron_cpu_offline::preparation .................   Passed    0.23 sec
        Start 279: testcorenrn_watch::coreneuron_cpu_offline::preparation
 41/285 Test #279: testcorenrn_watch::coreneuron_cpu_offline::preparation ...................   Passed    0.23 sec
        Start 218: external_ringtest::neuron_mpi
 42/285 Test #218: external_ringtest::neuron_mpi ............................................   Passed    2.31 sec
        Start 219: external_ringtest::neuron_mpi_python
 43/285 Test #217: external_ringtest::neuron ................................................   Passed    4.18 sec
        Start 228: testcorenrn_bbcore::neuron
 44/285 Test #228: testcorenrn_bbcore::neuron ...............................................   Passed    0.22 sec
        Start 229: testcorenrn_bbcore::coreneuron_cpu_online
 45/285 Test #229: testcorenrn_bbcore::coreneuron_cpu_online ................................   Passed    0.47 sec
        Start 230: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate
 46/285 Test #230: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ...............   Passed    0.54 sec
        Start 231: testcorenrn_bbcore::coreneuron_cpu_offline
 47/285 Test #219: external_ringtest::neuron_mpi_python .....................................   Passed    2.67 sec
        Start 220: external_ringtest::coreneuron_cpu_mpi_offline_saverestore
 48/285 Test #231: testcorenrn_bbcore::coreneuron_cpu_offline ...............................   Passed    0.43 sec
        Start 234: testcorenrn_conc::neuron
 49/285 Test #234: testcorenrn_conc::neuron .................................................   Passed    0.26 sec
        Start 235: testcorenrn_conc::coreneuron_cpu_online
 50/285 Test #235: testcorenrn_conc::coreneuron_cpu_online ..................................   Passed    0.48 sec
        Start 236: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate
 51/285 Test #236: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate .................   Passed    0.54 sec
        Start 237: testcorenrn_conc::coreneuron_cpu_offline
 52/285 Test #220: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................   Passed    1.58 sec
        Start 221: external_ringtest::coreneuron_cpu_mpi
 53/285 Test #237: testcorenrn_conc::coreneuron_cpu_offline .................................   Passed    0.18 sec
        Start 240: testcorenrn_deriv::neuron
 54/285 Test #240: testcorenrn_deriv::neuron ................................................   Passed    0.26 sec
        Start 241: testcorenrn_deriv::coreneuron_cpu_online
 55/285 Test #241: testcorenrn_deriv::coreneuron_cpu_online .................................   Passed    0.48 sec
        Start 242: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate
 56/285 Test #221: external_ringtest::coreneuron_cpu_mpi ....................................   Passed    0.90 sec
        Start 222: external_ringtest::coreneuron_cpu_mpi_python
 57/285 Test #242: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................   Passed    0.79 sec
        Start 243: testcorenrn_deriv::coreneuron_cpu_offline
 58/285 Test #243: testcorenrn_deriv::coreneuron_cpu_offline ................................   Passed    0.18 sec
        Start 252: testcorenrn_kin::neuron
 59/285 Test #252: testcorenrn_kin::neuron ..................................................   Passed    0.23 sec
        Start 253: testcorenrn_kin::coreneuron_cpu_online
 60/285 Test #222: external_ringtest::coreneuron_cpu_mpi_python .............................   Passed    1.19 sec
        Start 223: external_ringtest::coreneuron_cpu_mpi_offline
 61/285 Test #253: testcorenrn_kin::coreneuron_cpu_online ...................................   Passed    0.49 sec
        Start 254: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate
 62/285 Test #223: external_ringtest::coreneuron_cpu_mpi_offline ............................   Passed    0.46 sec
        Start 246: testcorenrn_gf::neuron
 63/285 Test #254: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate ..................   Passed    0.54 sec
        Start 255: testcorenrn_kin::coreneuron_cpu_offline
 64/285 Test #255: testcorenrn_kin::coreneuron_cpu_offline ..................................   Passed    0.18 sec
        Start   1: cmd_interface_test
 65/285 Test   #1: cmd_interface_test .......................................................   Passed    0.52 sec
        Start   2: interleave_info_constructor_test
 66/285 Test   #2: interleave_info_constructor_test .........................................   Passed    0.30 sec
        Start   3: alignment_test
 67/285 Test   #3: alignment_test ...........................................................   Passed    0.30 sec
        Start   4: queuing_test
 68/285 Test #246: testcorenrn_gf::neuron ...................................................   Passed    1.95 sec
        Start 247: testcorenrn_gf::coreneuron_cpu_online
 69/285 Test   #4: queuing_test .............................................................   Passed    0.30 sec
        Start   5: test-solver
 70/285 Test   #5: test-solver ..............................................................   Passed    0.40 sec
        Start   6: lfp_test
 71/285 Test #247: testcorenrn_gf::coreneuron_cpu_online ....................................   Passed    0.64 sec
        Start 248: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate
 72/285 Test   #6: lfp_test .................................................................   Passed    0.37 sec
        Start   7: unit_tests::testneuron
 73/285 Test   #7: unit_tests::testneuron ...................................................   Passed    0.34 sec
        Start   8: unit_tests::testneuron_soa_erase_calls_terminate
 74/285 Test   #8: unit_tests::testneuron_soa_erase_calls_terminate .........................   Passed    0.10 sec
        Start   9: ringtest
 75/285 Test   #9: ringtest .................................................................   Passed    0.49 sec
        Start  10: connect_dend
 76/285 Test  #10: connect_dend .............................................................   Passed    0.17 sec
        Start  11: mpi_init::nrniv_mpiopt
 77/285 Test  #11: mpi_init::nrniv_mpiopt ...................................................   Passed    0.18 sec
        Start  12: mpi_init::nrniv_nrnmpi_init
 78/285 Test  #12: mpi_init::nrniv_nrnmpi_init ..............................................   Passed    0.19 sec
        Start  13: mpi_init::python_nrnmpi_init
 79/285 Test #248: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ...................   Passed    1.77 sec
        Start 249: testcorenrn_gf::coreneuron_cpu_offline
 80/285 Test #249: testcorenrn_gf::coreneuron_cpu_offline ...................................   Passed    0.48 sec
        Start 258: testcorenrn_patstim::neuron
 81/285 Test  #13: mpi_init::python_nrnmpi_init .............................................   Passed    0.56 sec
        Start  14: mpi_init::python_mpienv
 82/285 Test #258: testcorenrn_patstim::neuron ..............................................   Passed    0.46 sec
        Start 259: testcorenrn_patstim::coreneuron_cpu_offline_saverestore
 83/285 Test  #14: mpi_init::python_mpienv ..................................................   Passed    0.58 sec
        Start  15: mpi_init::nrniv_mpiexec_mpiopt
 84/285 Test  #15: mpi_init::nrniv_mpiexec_mpiopt ...........................................   Passed    0.18 sec
        Start  16: mpi_init::nrniv_mpiexec_nrnmpi_init
 85/285 Test  #16: mpi_init::nrniv_mpiexec_nrnmpi_init ......................................   Passed    0.17 sec
        Start  17: mpi_init::python_mpiexec_nrnmpi_init
 86/285 Test #259: testcorenrn_patstim::coreneuron_cpu_offline_saverestore ..................   Passed    0.66 sec
        Start 260: testcorenrn_patstim::coreneuron_cpu_offline
 87/285 Test #260: testcorenrn_patstim::coreneuron_cpu_offline ..............................   Passed    0.29 sec
        Start 263: testcorenrn_vecplay::neuron
 88/285 Test  #17: mpi_init::python_mpiexec_nrnmpi_init .....................................   Passed    0.65 sec
        Start  18: mpi_init::python_mpiexec_mpienv
 89/285 Test #263: testcorenrn_vecplay::neuron ..............................................   Passed    0.35 sec
        Start 264: testcorenrn_vecplay::coreneuron_cpu_online
 90/285 Test  #18: mpi_init::python_mpiexec_mpienv ..........................................   Passed    0.66 sec
        Start  19: unit_tests::python_unit_tests
 91/285 Test #264: testcorenrn_vecplay::coreneuron_cpu_online ...............................   Passed    0.66 sec
        Start 265: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate
 92/285 Test  #19: unit_tests::python_unit_tests ............................................   Passed    0.93 sec
        Start  20: pytest::basic_tests_py3.10
 93/285 Test #265: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate ..............   Passed    0.82 sec
        Start 266: testcorenrn_vecplay::coreneuron_cpu_offline
 94/285 Test #266: testcorenrn_vecplay::coreneuron_cpu_offline ..............................   Passed    0.19 sec
        Start 275: testcorenrn_watch::neuron
 95/285 Test #275: testcorenrn_watch::neuron ................................................   Passed    0.46 sec
        Start 276: testcorenrn_watch::coreneuron_cpu_online
 96/285 Test  #20: pytest::basic_tests_py3.10 ...............................................   Passed    0.89 sec
        Start  21: pytest_coreneuron::basic_tests_py3.10
 97/285 Test #276: testcorenrn_watch::coreneuron_cpu_online .................................   Passed    0.56 sec
        Start 277: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate
 98/285 Test #277: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................   Passed    0.82 sec
        Start 278: testcorenrn_watch::coreneuron_cpu_offline
 99/285 Test #278: testcorenrn_watch::coreneuron_cpu_offline ................................   Passed    0.19 sec
        Start 281: testcorenrn_netstimdirect::direct_netstimdirect
100/285 Test #281: testcorenrn_netstimdirect::direct_netstimdirect ..........................   Passed    0.91 sec
        Start 282: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate
101/285 Test #282: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate .........   Passed    0.86 sec
        Start  22: datahandle::datahandle_tests
        Start  23: coverage_tests::cover_tests
102/285 Test  #22: datahandle::datahandle_tests .............................................   Passed    0.98 sec
        Start  24: example_nmodl::ca_ap_hoc
103/285 Test  #23: coverage_tests::cover_tests ..............................................   Passed    1.17 sec
        Start  25: example_nmodl::cabpump_hoc
104/285 Test  #24: example_nmodl::ca_ap_hoc .................................................   Passed    0.56 sec
        Start  26: example_nmodl::cachan_hoc
105/285 Test  #25: example_nmodl::cabpump_hoc ...............................................   Passed    0.42 sec
        Start  27: example_nmodl::cadif_hoc
106/285 Test  #26: example_nmodl::cachan_hoc ................................................   Passed    0.14 sec
        Start  28: example_nmodl::cadifusl_hoc
107/285 Test  #27: example_nmodl::cadif_hoc .................................................   Passed    0.17 sec
        Start  29: example_nmodl::cadifusl1_hoc
108/285 Test  #28: example_nmodl::cadifusl_hoc ..............................................   Passed    0.20 sec
        Start  30: example_nmodl::cadifusl2_hoc
109/285 Test  #30: example_nmodl::cadifusl2_hoc .............................................   Passed    0.17 sec
        Start  31: example_nmodl::cagk_hoc
110/285 Test  #29: example_nmodl::cadifusl1_hoc .............................................   Passed    0.29 sec
        Start  32: example_nmodl::capmp_hoc
111/285 Test  #21: pytest_coreneuron::basic_tests_py3.10 ....................................   Passed    5.18 sec
        Start  33: example_nmodl::cv_hoc
112/285 Test  #31: example_nmodl::cagk_hoc ..................................................   Passed    0.14 sec
        Start  34: example_nmodl::fh_hoc
113/285 Test  #33: example_nmodl::cv_hoc ....................................................   Passed    0.13 sec
        Start  35: example_nmodl::fit1_hoc
114/285 Test  #32: example_nmodl::capmp_hoc .................................................   Passed    0.25 sec
        Start  36: example_nmodl::gap_hoc
115/285 Test  #34: example_nmodl::fh_hoc ....................................................   Passed    0.13 sec
        Start  37: example_nmodl::hh1_hoc
116/285 Test  #35: example_nmodl::fit1_hoc ..................................................   Passed    0.13 sec
        Start  38: example_nmodl::hhvect_hoc
117/285 Test  #36: example_nmodl::gap_hoc ...................................................   Passed    0.15 sec
        Start  39: example_nmodl::nacum_hoc
118/285 Test  #37: example_nmodl::hh1_hoc ...................................................   Passed    0.14 sec
        Start  40: example_nmodl::nadifl1_hoc
119/285 Test  #38: example_nmodl::hhvect_hoc ................................................   Passed    0.14 sec
        Start  41: example_nmodl::nadifl2_hoc
120/285 Test  #39: example_nmodl::nacum_hoc .................................................   Passed    0.13 sec
        Start  42: example_nmodl::nadifl3_hoc
121/285 Test  #40: example_nmodl::nadifl1_hoc ...............................................   Passed    0.16 sec
        Start  43: example_nmodl::nadifl4_hoc
122/285 Test  #41: example_nmodl::nadifl2_hoc ...............................................   Passed    0.17 sec
        Start  44: example_nmodl::obj_ex_hoc
123/285 Test  #42: example_nmodl::nadifl3_hoc ...............................................   Passed    0.17 sec
        Start  45: example_nmodl::order_hoc
124/285 Test  #44: example_nmodl::obj_ex_hoc ................................................   Passed    0.13 sec
        Start  46: example_nmodl::passiv_hoc
125/285 Test  #43: example_nmodl::nadifl4_hoc ...............................................   Passed    0.17 sec
        Start  47: example_nmodl::stim1_hoc
126/285 Test  #46: example_nmodl::passiv_hoc ................................................   Passed    0.14 sec
        Start  48: example_nmodl::syn1_hoc
127/285 Test  #45: example_nmodl::order_hoc .................................................   Passed    0.17 sec
        Start  49: example_nmodl::synpre_hoc
128/285 Test  #47: example_nmodl::stim1_hoc .................................................   Passed    0.14 sec
        Start  50: example_nmodl::tstextrn_hoc
129/285 Test  #48: example_nmodl::syn1_hoc ..................................................   Passed    0.14 sec
        Start  51: example_nmodl::tstpnt1_hoc
130/285 Test  #50: example_nmodl::tstextrn_hoc ..............................................   Passed    0.13 sec
        Start  52: example_nmodl::tstpnt2_hoc
131/285 Test  #49: example_nmodl::synpre_hoc ................................................   Passed    0.20 sec
        Start  53: example_nmodl::tstvec_hoc
132/285 Test  #51: example_nmodl::tstpnt1_hoc ...............................................   Passed    0.14 sec
        Start  54: example_nmodl::cagkftab_py
133/285 Test  #52: example_nmodl::tstpnt2_hoc ...............................................   Passed    0.13 sec
        Start  55: example_nmodl::expsynspine_py
134/285 Test  #53: example_nmodl::tstvec_hoc ................................................   Passed    0.14 sec
        Start  56: example_nmodl::nonlin_py
135/285 Test  #55: example_nmodl::expsynspine_py ............................................   Passed    0.83 sec
        Start  57: example_nmodl::tstpnt1_py
136/285 Test  #57: example_nmodl::tstpnt1_py ................................................   Passed    0.51 sec
        Start  58: example_nmodl::tstpnt2_py
137/285 Test  #58: example_nmodl::tstpnt2_py ................................................   Passed    0.50 sec
        Start  59: example_nmodl::vlag_py
138/285 Test  #59: example_nmodl::vlag_py ...................................................   Passed    0.53 sec
        Start  60: hoctests::test_loadbal_hoc
139/285 Test  #56: example_nmodl::nonlin_py .................................................   Passed    2.72 sec
        Start  61: hoctests::perf1_hoc
140/285 Test  #60: hoctests::test_loadbal_hoc ...............................................   Passed    0.54 sec
        Start  62: hoctests::test1_hoc
141/285 Test  #62: hoctests::test1_hoc ......................................................   Passed    0.35 sec
        Start  63: hoctests::test2_hoc
142/285 Test  #63: hoctests::test2_hoc ......................................................   Passed    0.21 sec
        Start  64: hoctests::test3_hoc
143/285 Test  #64: hoctests::test3_hoc ......................................................   Passed    0.15 sec
        Start  65: hoctests::test4_hoc
144/285 Test  #65: hoctests::test4_hoc ......................................................   Passed    0.13 sec
        Start  66: hoctests::test5_hoc
145/285 Test  #66: hoctests::test5_hoc ......................................................   Passed    0.12 sec
        Start  67: hoctests::test6_hoc
146/285 Test  #67: hoctests::test6_hoc ......................................................   Passed    0.12 sec
        Start  68: hoctests::test7_hoc
147/285 Test  #68: hoctests::test7_hoc ......................................................   Passed    0.13 sec
        Start  69: hoctests::test8_hoc
148/285 Test  #61: hoctests::perf1_hoc ......................................................   Passed    1.45 sec
        Start  70: hoctests::test9_hoc
149/285 Test  #69: hoctests::test8_hoc ......................................................   Passed    0.13 sec
        Start  71: hoctests::test_cvinterp_py
150/285 Test  #54: example_nmodl::cagkftab_py ...............................................   Passed    4.38 sec
        Start  72: hoctests::test_hocGUI2_py
151/285 Test  #70: hoctests::test9_hoc ......................................................   Passed    0.13 sec
        Start  73: hoctests::test_kschan_py
152/285 Test  #71: hoctests::test_cvinterp_py ...............................................   Passed    0.80 sec
        Start  74: hoctests::test_mechfunc_py
153/285 Test  #72: hoctests::test_hocGUI2_py ................................................   Passed    0.73 sec
        Start  75: hoctests::test_mode_py
154/285 Test  #73: hoctests::test_kschan_py .................................................   Passed    0.80 sec
        Start  76: hoctests::test_neurondemo_py
155/285 Test  #74: hoctests::test_mechfunc_py ...............................................   Passed    0.79 sec
        Start  77: hoctests::test_nrniv-launch_py
156/285 Test  #75: hoctests::test_mode_py ...................................................   Passed    0.78 sec
        Start  78: hoctests::test_setdata_py
157/285 Test  #76: hoctests::test_neurondemo_py .............................................   Passed    0.77 sec
        Start  79: hoctests::test_shape_py
158/285 Test  #77: hoctests::test_nrniv-launch_py ...........................................   Passed    0.38 sec
        Start  80: hoctests::test_thread_partition_py
159/285 Test  #78: hoctests::test_setdata_py ................................................   Passed    0.81 sec
        Start  81: hoctests::test1_py
160/285 Test  #79: hoctests::test_shape_py ..................................................   Passed    0.84 sec
        Start  82: hoctests::test2_py
161/285 Test  #80: hoctests::test_thread_partition_py .......................................   Passed    1.04 sec
        Start  83: hoctests::test9_py
162/285 Test  #82: hoctests::test2_py .......................................................   Passed    0.63 sec
        Start  89: coreneuron_standalone::test_nrn_corenrn_standalone
163/285 Test  #81: hoctests::test1_py .......................................................   Passed    0.79 sec
        Start  90: nmodl_tests::test_table
164/285 Test  #83: hoctests::test9_py .......................................................   Passed    0.60 sec
        Start  91: nmodl_tests::test_disc
165/285 Test  #89: coreneuron_standalone::test_nrn_corenrn_standalone .......................   Passed    1.15 sec
        Start  92: nmodl_tests::test_function_table
166/285 Test  #90: nmodl_tests::test_table ..................................................   Passed    1.29 sec
        Start  93: nmodl_tests::test_kinetic
167/285 Test  #91: nmodl_tests::test_disc ...................................................   Passed    0.96 sec
        Start  94: coreneuron_modtests::version_macros
168/285 Test  #92: nmodl_tests::test_function_table .........................................   Passed    0.90 sec
        Start  96: coreneuron_modtests::fornetcon_py_cpu
169/285 Test  #93: nmodl_tests::test_kinetic ................................................   Passed    1.07 sec
        Start  97: coreneuron_modtests::direct_py_cpu
170/285 Test  #94: coreneuron_modtests::version_macros ......................................   Passed    1.36 sec
        Start  98: coreneuron_modtests::direct_hoc_cpu
171/285 Test  #96: coreneuron_modtests::fornetcon_py_cpu ....................................   Passed    1.29 sec
        Start  99: coreneuron_modtests::spikes_py_cpu
172/285 Test  #98: coreneuron_modtests::direct_hoc_cpu ......................................   Passed    0.69 sec
        Start 100: coreneuron_modtests::spikes_file_mode_py_cpu
173/285 Test  #97: coreneuron_modtests::direct_py_cpu .......................................   Passed    1.04 sec
        Start 101: coreneuron_modtests::fast_imem_py_cpu
174/285 Test #100: coreneuron_modtests::spikes_file_mode_py_cpu .............................   Passed    0.94 sec
        Start 102: coreneuron_modtests::datareturn_py_cpu
175/285 Test  #99: coreneuron_modtests::spikes_py_cpu .......................................   Passed    1.06 sec
        Start 103: coreneuron_modtests::test_units_py_cpu
176/285 Test #101: coreneuron_modtests::fast_imem_py_cpu ....................................   Passed    1.17 sec
        Start 104: coreneuron_modtests::test_netmove_py_cpu
177/285 Test #103: coreneuron_modtests::test_units_py_cpu ...................................   Passed    0.79 sec
        Start 105: coreneuron_modtests::test_pointer_py_cpu
178/285 Test #102: coreneuron_modtests::datareturn_py_cpu ...................................   Passed    1.52 sec
        Start 106: coreneuron_modtests::test_watchrange_py_cpu
179/285 Test #104: coreneuron_modtests::test_netmove_py_cpu .................................   Passed    1.51 sec
        Start 107: coreneuron_modtests::test_psolve_py_cpu
180/285 Test #106: coreneuron_modtests::test_watchrange_py_cpu ..............................   Passed    0.75 sec
        Start 108: coreneuron_modtests::test_ba_py_cpu
181/285 Test #107: coreneuron_modtests::test_psolve_py_cpu ..................................   Passed    1.14 sec
        Start 109: coreneuron_modtests::test_natrans_py_cpu
182/285 Test #108: coreneuron_modtests::test_ba_py_cpu ......................................   Passed    0.73 sec
        Start 112: nmodl_tests_coreneuron::test_table_coreneuron_cpu
183/285 Test #112: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................   Passed    0.80 sec
        Start 113: nmodl_tests_coreneuron::test_disc_coreneuron_cpu
184/285 Test #109: coreneuron_modtests::test_natrans_py_cpu .................................   Passed    0.91 sec
        Start 114: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu
185/285 Test #105: coreneuron_modtests::test_pointer_py_cpu .................................   Passed    3.32 sec
        Start 115: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu
186/285 Test #113: nmodl_tests_coreneuron::test_disc_coreneuron_cpu .........................   Passed    0.77 sec
        Start 116: modlunit_unitstest
187/285 Test #114: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ...............   Passed    0.77 sec
        Start 117: modlunit_hh
188/285 Test #116: modlunit_unitstest .......................................................   Passed    0.30 sec
        Start 118: modlunit_stim
189/285 Test #117: modlunit_hh ..............................................................   Passed    0.30 sec
        Start 119: modlunit_pattern
190/285 Test #118: modlunit_stim ............................................................   Passed    0.09 sec
        Start 120: api::unit_tests
191/285 Test #119: modlunit_pattern .........................................................   Passed    0.09 sec
        Start 121: api::hh_sim_cpp
192/285 Test #115: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ......................   Passed    0.87 sec
        Start 122: api::netcon_cpp
193/285 Test #120: api::unit_tests ..........................................................   Passed    0.32 sec
        Start 123: api::sections_c
194/285 Test #121: api::hh_sim_cpp ..........................................................   Passed    0.52 sec
        Start 124: api::vclamp_cpp
195/285 Test #122: api::netcon_cpp ..........................................................   Passed    0.83 sec
        Start 125: pyinit::nrniv_script.py
196/285 Test #123: api::sections_c ..........................................................   Passed    0.57 sec
        Start 126: pyinit::nrniv_script.py_error
197/285 Test #125: pyinit::nrniv_script.py ..................................................   Passed    0.12 sec
        Start 127: pyinit::nrniv_two_scripts.py
198/285 Test #126: pyinit::nrniv_script.py_error ............................................   Passed    0.11 sec
        Start 128: pyinit::nrniv_two_scripts.py_error_check_code
199/285 Test #127: pyinit::nrniv_two_scripts.py .............................................   Passed    0.13 sec
        Start 129: pyinit::nrniv_two_scripts.py_error_check_output
200/285 Test #124: api::vclamp_cpp ..........................................................   Passed    0.60 sec
        Start 130: pyinit::nrniv_python_command
201/285 Test #128: pyinit::nrniv_two_scripts.py_error_check_code ............................   Passed    0.12 sec
        Start 131: pyinit::nrniv_python_command_error
202/285 Test #129: pyinit::nrniv_two_scripts.py_error_check_output ..........................   Passed    0.12 sec
        Start 132: pyinit::nrniv_python_script.py
203/285 Test #130: pyinit::nrniv_python_command .............................................   Passed    0.13 sec
        Start 133: pyinit::nrniv_python_script.py_error
204/285 Test #131: pyinit::nrniv_python_command_error .......................................   Passed    0.13 sec
        Start 134: pyinit::nrniv_python_command_twice
205/285 Test #132: pyinit::nrniv_python_script.py ...........................................   Passed    0.13 sec
        Start 135: pyinit::nrniv_python_script.py_twice
206/285 Test #133: pyinit::nrniv_python_script.py_error .....................................   Passed    0.13 sec
        Start 136: pyinit::nrniv_python_command_args
207/285 Test #134: pyinit::nrniv_python_command_twice .......................................   Passed    0.13 sec
        Start 137: pyinit::nrniv_python_script.py_args
208/285 Test #135: pyinit::nrniv_python_script.py_twice .....................................   Passed    0.13 sec
        Start 138: pyinit::nrniv_nopython_PythonObject
209/285 Test #136: pyinit::nrniv_python_command_args ........................................   Passed    0.13 sec
        Start 139: pyinit::nrniv_nopython_PythonObject_pyexe
210/285 Test #137: pyinit::nrniv_python_script.py_args ......................................   Passed    0.13 sec
        Start 140: pyinit::nrniv_nopython_PythonObject_pyenv
211/285 Test #138: pyinit::nrniv_nopython_PythonObject ......................................   Passed    0.11 sec
        Start 141: pyinit::nrniv_py3.10_python_command_version_check
212/285 Test #140: pyinit::nrniv_nopython_PythonObject_pyenv ................................   Passed    0.11 sec
        Start 142: pyinit::nrniv_py3.10_python_check_sys_path
213/285 Test #139: pyinit::nrniv_nopython_PythonObject_pyexe ................................   Passed    0.11 sec
        Start 144: pyinit::nrniv_py3.10_nrnpython_check_sys_path
214/285 Test #141: pyinit::nrniv_py3.10_python_command_version_check ........................   Passed    0.13 sec
        Start 146: pyinit::nrniv_py3.10_python_check_sys_prefix
215/285 Test #142: pyinit::nrniv_py3.10_python_check_sys_path ...............................   Passed    0.13 sec
        Start 148: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix
216/285 Test #144: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................   Passed    0.13 sec
        Start 150: pyinit::nrniv_py3.10_python_check_sys_exec_prefix
217/285 Test #146: pyinit::nrniv_py3.10_python_check_sys_prefix .............................   Passed    0.13 sec
        Start 152: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix
218/285 Test #148: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix ..........................   Passed    0.13 sec
        Start 154: pyinit::nrniv_py3.10_python_check_sys_base_prefix
219/285 Test #150: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................   Passed    0.13 sec
        Start 156: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix
220/285 Test #152: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix .....................   Passed    0.13 sec
        Start 158: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix
221/285 Test #156: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix .....................   Passed    0.13 sec
        Start 160: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix
222/285 Test #154: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................   Passed    0.13 sec
        Start 162: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding
223/285 Test #158: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ...................   Passed    0.13 sec
        Start 164: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding
224/285 Test #160: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................   Passed    0.13 sec
        Start 166: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding
225/285 Test #162: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding ....................   Passed    0.13 sec
        Start 168: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding
226/285 Test #164: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding .................   Passed    0.13 sec
        Start 170: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding
227/285 Test #166: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding .....................   Passed    0.13 sec
        Start 172: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding
228/285 Test #168: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding ..................   Passed    0.13 sec
        Start 174: pyinit::nrniv_py3.10_python_command_import_neuron
229/285 Test #170: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding ....................   Passed    0.13 sec
        Start 175: pyinit::py3.10_command_import_neuron
230/285 Test #172: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding .................   Passed    0.13 sec
        Start 176: pyinit::nrniv_py3.10_hoc_command_nrnpython
231/285 Test #176: pyinit::nrniv_py3.10_hoc_command_nrnpython ...............................   Passed    0.35 sec
        Start 177: pyinit::nrniv_pydef_python_command_version_check
232/285 Test #174: pyinit::nrniv_py3.10_python_command_import_neuron ........................   Passed    0.64 sec
        Start 178: pyinit::nrniv_pydef_python_check_sys_path
233/285 Test #177: pyinit::nrniv_pydef_python_command_version_check .........................   Passed    0.19 sec
        Start 180: pyinit::nrniv_pydef_nrnpython_check_sys_path
234/285 Test #175: pyinit::py3.10_command_import_neuron .....................................   Passed    0.63 sec
        Start 182: pyinit::nrniv_pydef_python_check_sys_prefix
235/285 Test #178: pyinit::nrniv_pydef_python_check_sys_path ................................   Passed    0.13 sec
        Start 184: pyinit::nrniv_pydef_nrnpython_check_sys_prefix
236/285 Test #180: pyinit::nrniv_pydef_nrnpython_check_sys_path .............................   Passed    0.14 sec
        Start 186: pyinit::nrniv_pydef_python_check_sys_exec_prefix
237/285 Test #182: pyinit::nrniv_pydef_python_check_sys_prefix ..............................   Passed    0.13 sec
        Start 188: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix
238/285 Test #184: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ...........................   Passed    0.13 sec
        Start 190: pyinit::nrniv_pydef_python_check_sys_base_prefix
239/285 Test #186: pyinit::nrniv_pydef_python_check_sys_exec_prefix .........................   Passed    0.13 sec
        Start 192: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix
240/285 Test #188: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ......................   Passed    0.13 sec
        Start 194: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix
241/285 Test #190: pyinit::nrniv_pydef_python_check_sys_base_prefix .........................   Passed    0.13 sec
        Start 196: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix
242/285 Test #192: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ......................   Passed    0.13 sec
        Start 198: pyinit::nrniv_pydef_python_check_sys_stderr.encoding
243/285 Test #194: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix ....................   Passed    0.13 sec
        Start 200: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding
244/285 Test #196: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix .................   Passed    0.13 sec
        Start 202: pyinit::nrniv_pydef_python_check_sys_stdin.encoding
245/285 Test #198: pyinit::nrniv_pydef_python_check_sys_stderr.encoding .....................   Passed    0.13 sec
        Start 204: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding
246/285 Test #200: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding ..................   Passed    0.13 sec
        Start 206: pyinit::nrniv_pydef_python_check_sys_stdout.encoding
247/285 Test #202: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ......................   Passed    0.13 sec
        Start 208: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding
248/285 Test #204: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ...................   Passed    0.13 sec
        Start 210: pyinit::nrniv_pydef_python_command_import_neuron
249/285 Test #206: pyinit::nrniv_pydef_python_check_sys_stdout.encoding .....................   Passed    0.13 sec
        Start 211: pyinit::pydef_command_import_neuron
250/285 Test #208: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding ..................   Passed    0.13 sec
        Start 212: pyinit::nrniv_pydef_hoc_command_nrnpython
251/285 Test #212: pyinit::nrniv_pydef_hoc_command_nrnpython ................................   Passed    0.23 sec
        Start 213: external_nrntest
252/285 Test #210: pyinit::nrniv_pydef_python_command_import_neuron .........................   Passed    0.61 sec
        Start 233: testcorenrn_bbcore::compare_results
253/285 Test #211: pyinit::pydef_command_import_neuron ......................................   Passed    0.60 sec
        Start 239: testcorenrn_conc::compare_results
254/285 Test #239: testcorenrn_conc::compare_results ........................................   Passed    0.16 sec
        Start 245: testcorenrn_deriv::compare_results
255/285 Test #233: testcorenrn_bbcore::compare_results ......................................   Passed    0.18 sec
        Start 251: testcorenrn_gf::compare_results
256/285 Test #245: testcorenrn_deriv::compare_results .......................................   Passed    0.02 sec
        Start 257: testcorenrn_kin::compare_results
257/285 Test #251: testcorenrn_gf::compare_results ..........................................   Passed    0.02 sec
        Start 262: testcorenrn_patstim::compare_results
258/285 Test #257: testcorenrn_kin::compare_results .........................................   Passed    0.02 sec
        Start 268: testcorenrn_vecplay::compare_results
259/285 Test #262: testcorenrn_patstim::compare_results .....................................   Passed    0.02 sec
        Start 280: testcorenrn_watch::compare_results
260/285 Test #268: testcorenrn_vecplay::compare_results .....................................   Passed    0.02 sec
        Start 283: testcorenrn_netstimdirect::compare_results
261/285 Test #280: testcorenrn_watch::compare_results .......................................   Passed    0.02 sec
262/285 Test #283: testcorenrn_netstimdirect::compare_results ...............................   Passed    0.02 sec
        Start  85: parallel::partrans
263/285 Test  #85: parallel::partrans .......................................................   Passed    0.92 sec
        Start  86: parallel::netpar
264/285 Test  #86: parallel::netpar .........................................................   Passed    0.73 sec
        Start  87: parallel::bas
265/285 Test  #87: parallel::bas ............................................................   Passed    3.62 sec
        Start  88: parallel::nrntest_fast
266/285 Test  #88: parallel::nrntest_fast ...................................................   Passed    1.28 sec
        Start  95: coreneuron_modtests::inputpresyn_py
267/285 Test  #95: coreneuron_modtests::inputpresyn_py ......................................   Passed    0.73 sec
        Start 110: coreneuron_modtests::spikes_mpi_file_mode_py_cpu
268/285 Test #110: coreneuron_modtests::spikes_mpi_file_mode_py_cpu .........................   Passed    0.82 sec
        Start 284: tqperf::coreneuron_special
269/285 Test #284: tqperf::coreneuron_special ...............................................   Passed    2.61 sec
        Start 285: tqperf::coreneuron_python
270/285 Test #285: tqperf::coreneuron_python ................................................   Passed    2.34 sec
271/285 Test #213: external_nrntest .........................................................   Passed   43.46 sec
        Start 273: testcorenrn_vecevent::coreneuron_cpu_offline::preparation
272/285 Test #273: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................   Passed    0.26 sec
        Start 214: reduced_dentate::neuron
273/285 Test #214: reduced_dentate::neuron ..................................................   Passed   39.42 sec
        Start 215: reduced_dentate::coreneuron_cpu
274/285 Test #215: reduced_dentate::coreneuron_cpu ..........................................   Passed   31.61 sec
        Start 225: external_ringtest::coreneuron_cpu_mpi_threads
275/285 Test #225: external_ringtest::coreneuron_cpu_mpi_threads ............................   Passed    0.94 sec
        Start 226: external_ringtest::coreneuron_cpu_mpi_threads_python
276/285 Test #226: external_ringtest::coreneuron_cpu_mpi_threads_python .....................   Passed    1.01 sec
        Start 269: testcorenrn_vecevent::neuron
277/285 Test #269: testcorenrn_vecevent::neuron .............................................   Passed    0.28 sec
        Start 270: testcorenrn_vecevent::coreneuron_cpu_online
278/285 Test #270: testcorenrn_vecevent::coreneuron_cpu_online ..............................   Passed    0.59 sec
        Start 271: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate
279/285 Test #271: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate .............   Passed    0.64 sec
        Start 272: testcorenrn_vecevent::coreneuron_cpu_offline
280/285 Test #272: testcorenrn_vecevent::coreneuron_cpu_offline .............................   Passed    0.22 sec
        Start  84: parallel::subworld
281/285 Test  #84: parallel::subworld .......................................................   Passed    1.18 sec
        Start 111: coreneuron_modtests::test_subworlds_py_cpu
282/285 Test #111: coreneuron_modtests::test_subworlds_py_cpu ...............................   Passed    1.32 sec
        Start 216: reduced_dentate::compare_results
        Start 227: external_ringtest::compare_results
        Start 274: testcorenrn_vecevent::compare_results
283/285 Test #274: testcorenrn_vecevent::compare_results ....................................   Passed    0.02 sec
284/285 Test #216: reduced_dentate::compare_results .........................................   Passed    0.02 sec
285/285 Test #227: external_ringtest::compare_results .......................................   Passed    0.02 sec

100% tests passed, 0 tests failed out of 285

Total Test time (real) = 169.34 sec
[32;1m$ cmake --build . --target install[0;m
[0/2] Re-checking globbed directories...
[1/5] Update hh.mod for CoreNEURON compatibility
[2/5] Generating help_data.dat
[3/5] cd /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h
fatal: No names found, cannot describe anything.
[4/5] Running utility command for hoc_module
INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS
INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk
WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org
WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0
INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'})
INFO:root:RX3D is DISABLED
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
!!

        ********************************************************************************
        Requirements should be satisfied by a PEP 517 installer.
        If you are using pip, you can try `pip install --use-pep517`.
        ********************************************************************************

!!
  dist.fetch_build_eggs(dist.setup_requires)
WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section'
/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:163: UserWarning: "/Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn" is shallow and may cause errors
  warnings.warn(f'"{wd.path}" is shallow and may cause errors')
INFO:root:running build
INFO:root:running build_py
INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron
INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/neuroml
INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/tests
INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/tests/utils
INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/rxd
INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/crxd
INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/build/lib/python/neuron/gui2
INFO:root:running build_ext
INFO:root:==> Building Python extensions
INFO:root:running build_scripts
[4/5] Install the project...
-- Install configuration: "Custom"
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/bin/nrn-enable-sanitizer
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/libfmt.a
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/fmt/args.h
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/fmt/chrono.h
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/fmt/color.h
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/fmt/compile.h
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/fmt/core.h
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/fmt/format.h
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/fmt/format-inl.h
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/fmt/os.h
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/fmt/ostream.h
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/fmt/printf.h
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/fmt/ranges.h
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/fmt/std.h
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/fmt/xchar.h
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/cmake/fmt/fmt-config.cmake
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/cmake/fmt/fmt-config-version.cmake
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/cmake/fmt/fmt-targets.cmake
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/cmake/fmt/fmt-targets-custom.cmake
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/pkgconfig/fmt.pc
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/libsymtab.a
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/librxdmath.dylib
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/libnrniv.dylib
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/libnrngnu.a
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/libvisitor.a
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/hclass3.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/hoc.cpython-310-darwin.so
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/expect_hocerr.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/psection.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/neuroml
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/neuroml/metadata.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/neuroml/morphml.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/neuroml/xml2nrn.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/neuroml/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/neuroml/neuroml.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/neuroml/rdxml.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/neuroml/biophysics.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/config.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/units.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/sections.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdException.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/options.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/plugins.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdsection.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/species.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdmath.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/rate.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/region.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/multiCompartmentReaction.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/constants.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/dimension3.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/section1d.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/export.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/initializer.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/rangevar.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/geometry.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxd.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/generalizedReaction.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/nodelist.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/node.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/gui.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/rxd/reaction.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/tests
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/tests/_subclass.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/tests/test_all.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/tests/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/tests/utils
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/strtobool.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/capture_stdout.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/tests/utils/checkresult.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/tests/test_neuron.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/tests/test_vector.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/tests/test_rxd.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/_config_params.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/coreneuron.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/doc.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/gui2
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/gui2/setup_threejs.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/gui2/config.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/gui2/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/gui2/rangevar.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/gui2/plotshape.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/gui2/utilities.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/crxd
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/crxd/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/help_data.dat
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/gui.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/python/neuron/nonvint_block_supervisor.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/libspdlog.a
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/libfmt.a
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/dsl.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/symtab.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ext
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ext/example
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ext/example/passive.mod
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ext/example/expsyn.mod
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ext/example/exp2syn.mod
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ext/example/hh.mod
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ext/viz
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ext/viz/index.html
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ext/viz/css
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ext/viz/css/tree.css
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js/d3.min.js
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ext/viz/js/tree.js
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/__init__.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/visitor.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ast.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/ode.py
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/nmodl/_nmodl.cpython-310-darwin.so
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/libpywrapper.a
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/gpu
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/gpu/nrn_acc_manager.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mechanism
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mechanism/membfunc.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mechanism/register_mech.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mechanism/mechanism.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mechanism/eion.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mpi/lib
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/config
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/config/config.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/nrn2core_direct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/mem_layout_util.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/phase1.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/reports
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_event.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/reports/report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/reports/sonata_report_handler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/reports/nrnreport.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/io/phase2.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/vrecitem.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/utils_cuda.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/nrnmutdec.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/string_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_assert.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/nrnoc_aux.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/progressbar/progressbar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/memory_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/profile
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/profile/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/lpt.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/offload.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/units.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/utils.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/randoms
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/randoms/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/nrn_stats.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/utils/ivocvect.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/nrnoc
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/nrnoc/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/membrane_definitions.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/sim
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/sim/multicore.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/sim/fast_imem.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/errcodes.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/ssimplic_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/sim/scopmath/sparse_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/apps
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/apps/corenrn_parameters.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/permute
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/permute/node_permute.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/permute/cellorder.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include//coreneuron/permute/data_layout.hpp
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/share/coreneuron/mod_func.c.pl
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/share/coreneuron/enginemech.cpp
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/bin/nmodl
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/bin/nrniv-core
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/share/coreneuron/coreneuron.cpp
-- Installing: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/lib/libcorenrnmech_internal.dylib
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/crout_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/neuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/neuron/cache
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/neuron/cache/mechanism_range.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/neuron/container
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/neuron/container/non_owning_soa_identifier.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/neuron/container/data_handle.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/neuron/container/generic_data_handle.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/neuron/model_data_fwd.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrnrandom.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/hocassrt.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/multicore.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/wrap_sprintf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/simeq.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/ocmisc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/multisplit.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/oc_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/hoclist.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/membfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/neuronapi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrnversionmacros.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/scoplib.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/sparse.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/membdef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/neuron.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/newton_struct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/newton
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/newton/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrncvode
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrncvode/nrnneosm.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/bbsavestate.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nmodlmutex.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/euler_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/hocdec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/md2redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/hocgetsym.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/euler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/options.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrnmpi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrnran123.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/CholmodSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/StdVector
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/StdDeque
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX512/PacketMath.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Core/arch/AVX
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_bmod.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Memory.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/plugins
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/plugins/ReshapedMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Householder
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Householder/HouseholderSequence.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDiagonalProduct.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDenseProduct.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseBlock.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCompressedBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTranspose.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/AmbiVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRedux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDot.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Jacobi/Jacobi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/QR
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/QR/FullPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseQR
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseQR/SparseQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SVD
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SVD/SVDBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SVD/JacobiSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SVD/BDCSVD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SVD/UpperBidiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Cholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LDLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Cholesky/LLT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/UmfPackSupport/UmfPackSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BasicPreconditioners.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/SolveWithGuess.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IncompleteLUT.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/LeastSquareConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/ConjugateGradient.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/BiCGSTAB.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/IterativeLinearSolvers/IterativeSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/LU
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/LU/InverseImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/LU/Determinant.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/LU/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/LU/arch/InverseSize4.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/LU/PartialPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/LU/FullPivLU.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AngleAxis.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/RotationBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/EulerAngles.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Hyperplane.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Homogeneous.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/AlignedBox.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Quaternion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Umeyama.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Translation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Scaling.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/OrthoMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Rotation2D.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/arch/Geometry_SIMD.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/Transform.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Geometry/ParametrizedLine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SuperLUSupport/SuperLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/MetisSupport/MetisSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/StlSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdList.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdDeque.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/details.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/StlSupport/StdVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky_impl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCholesky/SimplicialCholesky.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/EigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/Tridiagonalization.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/HessenbergDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/GeneralizedSelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/ComplexSchur.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/SelfAdjointEigenSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/RealQZ.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Eigenvalues/MatrixBaseEigenvalues.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/PaStiXSupport/PaStiXSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/KLUSupport/KLUSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/KLUSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrnapi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrncvode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrnsemanticversion.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/spmatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/ocfunc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/section_fwd.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/row_view.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/hoc_membf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/backtrace_utils.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrnisaac.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/parse_with_deps.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/newton_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrnredef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/dimplic.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/hoc.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/newton.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/crout.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/md1redef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrniv_mf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/memory.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/nrn_ansi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/deflate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/errcodes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/nrniv
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/engine.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/gpu
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mechanism
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mpi
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mpi/core
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/config
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/network
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp
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-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_dfs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_heap_relax_snode.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_panel_bmod.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Structs.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pruneL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_copy_to_ucol.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_Memory.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_pivotL.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLUImpl.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseLU/SparseLU_SupernodalMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Ordering.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Eigen_Colamd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/OrderingMethods/Amd.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/plugins
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/plugins/BlockMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/plugins/ArrayCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/plugins/IndexedViewMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/plugins/CommonCwiseBinaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/plugins/ReshapedMethods.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/plugins/MatrixCwiseUnaryOps.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Householder
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Householder/HouseholderSequence.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Householder/Householder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Householder/BlockHouseholder.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/PardisoSupport/PardisoSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSelfAdjointView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/CompressedStorage.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseBinaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseColEtree.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMatrixBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDiagonalProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTriangularView.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseAssign.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparsePermutation.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCwiseUnaryOp.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseMap.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDenseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRef.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseFuzzy.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/MappedSparseMatrix.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSparseProductWithPruning.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseSolverBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseBlock.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/TriangularSolver.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseCompressedBase.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseTranspose.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/AmbiVector.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseRedux.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/ConservativeSparseSparseProduct.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseUtil.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SparseCore/SparseDot.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Jacobi
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/Jacobi/Jacobi.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/SPQRSupport/SuiteSparseQRSupport.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/QR
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/QR/FullPivHouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/QR/HouseholderQR.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/QR/CompleteOrthogonalDecomposition.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install/include/Eigen/src/QR/ColPivHouseholderQR_LAPACKE.h
-- Up-to-date: /Users/gitlab-runner/builds/0/P189495/J1139117/hpc/cellular/nrn/install

## spack-setup.txt

      
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## test-neuron-nmodl-intel-legacy.txt

      
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## test-neuron-nmodl-intel-shared.txt

      
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## test-neuron-nmodl-nvhpc-acc-legacy.txt

      
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## test-neuron-nmodl-nvhpc-acc-shared.txt

      
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## test-neuron-nmodl-nvhpc-omp-legacy.txt

      
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## test-neuron-nmodl-nvhpc-omp.txt

      
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