Created
July 4, 2024 13:12
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Logfiles for GitLab pipeline https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/pipelines/220250 (:white_check_mark:) running on GitHub PR neuronsimulator/nrn#2953.
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1720096375:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1720096375:resolve_secrets [0Ksection_start:1720096375:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor155779853, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 220250, build ref , job ID 1338558 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1338558_PROD_P2160_CP14_C8 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2286915 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1338558_PROD_P2160_CP14_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250 --ntasks=2 --jobid=2286915 --cpus-per-task=8 --mem=160G | |
| section_end:1720096378:prepare_executor [0Ksection_start:1720096378:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i4n32 via bbpv1.epfl.ch... | |
| section_end:1720096381:prepare_script [0Ksection_start:1720096381:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1720096381:get_sources [0Ksection_start:1720096381:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=218959 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1720096387:restore_cache [0Ksection_start:1720096387:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1338556)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=219069 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1338556 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1720096388:download_artifacts [0Ksection_start:1720096388:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338558/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338558/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338558/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338558/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338558/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338558/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250/J1338558_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%oneapi ~rx3d~caliper~gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/xavp7ouhjfi6uyqg7yobt4fcc7majw7q | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2286915/ccache | |
| Config file: /nvme/bbpcihpcproj12/2286915/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu Jul 4 14:33:13 2024 | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (89.00%) | |
| Files: 8418 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%oneapi~caliper+coreneuron~gpu~legacy-unit~openmp~rx3d~shared~sympy+tests build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/xavp7ouhjfi6uyqg7yobt4fcc7majw7q | |
| Concretized | |
| -------------------------------- | |
| - lmfeevc neuron@git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop%oneapi@2023.2.0~backtrace~caliper+coreneuron~gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - fz3oxtc ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%oneapi@2023.2.0~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] xavp7ou ^nmodl@git.2ad008f2dfd4f581f08b2234d2ddb5955744649c=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| ==> Installing libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul [43/49] | |
| ==> No binary for libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul found: installing from source | |
| ==> No patches needed for libsonata-report | |
| ==> libsonata-report: Executing phase: 'cmake' | |
| ==> libsonata-report: Executing phase: 'build' | |
| ==> libsonata-report: Executing phase: 'install' | |
| ==> libsonata-report: Successfully installed libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8=develop-fz3oxtcl57lk2z5alhm3jvnsf6bsoiul | |
| Stage: 1.64s. Cmake: 5.07s. Build: 1.62s. Install: 0.11s. Post-install: 0.36s. Total: 8.96s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_oneapi-2023.2.0-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-fz3oxt | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_gcc-12.3.0-skylake/nmodl-git.2ad008f2dfd4f581f08b2234d2ddb5955744649c_develop-xavp7o | |
| ==> Installing neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop-lmfeevcnq35rh4b3exxbqyodrbd3gmlb [49/49] | |
| ==> No binary for neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop-lmfeevcnq35rh4b3exxbqyodrbd3gmlb found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop-lmfeevcnq35rh4b3exxbqyodrbd3gmlb | |
| Stage: 13.33s. Cmake: 1m 15.98s. Build: 12m 40.94s. Install: 1m 2.10s. Post-install: 7.16s. Total: 15m 22.74s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_oneapi-2023.2.0-skylake/neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d_develop-lmfeev | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be lmfeevcnq35rh4b3exxbqyodrbd3gmlb | |
| [32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2286915/ccache | |
| Config file: /nvme/bbpcihpcproj12/2286915/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu Jul 4 14:52:25 2024 | |
| Cacheable calls: 1006 / 1152 (87.33%) | |
| Hits: 977 / 1006 (97.12%) | |
| Direct: 543 / 977 (55.58%) | |
| Preprocessed: 434 / 977 (44.42%) | |
| Misses: 29 / 1006 ( 2.88%) | |
| Uncacheable calls: 146 / 1152 (12.67%) | |
| Autoconf compile/link: 5 / 146 ( 3.42%) | |
| Called for linking: 115 / 146 (78.77%) | |
| Called for preprocessing: 1 / 146 ( 0.68%) | |
| Compilation failed: 2 / 146 ( 1.37%) | |
| No input file: 23 / 146 (15.75%) | |
| Successful lookups: | |
| Direct: 543 / 1008 (53.87%) | |
| Preprocessed: 434 / 465 (93.33%) | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (88.95%) | |
| Files: 8553 | |
| Cleanups: 2 | |
| Hits: 977 / 1008 (96.92%) | |
| Misses: 31 / 1008 ( 3.08%) | |
| Reads: 2016 | |
| Writes: 417 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1720097548:step_script [0Ksection_start:1720097548:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:intel:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=246541 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Aintel%3Alegacy-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1720097570:archive_cache [0Ksection_start:1720097570:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=246727 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1338558 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=246779 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1338558 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=246820 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1338558 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1720097572:upload_artifacts_on_success [0Ksection_start:1720097572:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1720097573:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1720096376:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1720096376:resolve_secrets [0Ksection_start:1720096376:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor1577826275, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 220250, build ref , job ID 1338564 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1338564_PROD_P2160_CP17_C18 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2286917 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1338564_PROD_P2160_CP17_C18 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250 --ntasks=2 --jobid=2286917 --cpus-per-task=8 --mem=160G | |
| section_end:1720096378:prepare_executor [0Ksection_start:1720096378:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i4n19 via bbpv1.epfl.ch... | |
| section_end:1720096381:prepare_script [0Ksection_start:1720096381:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1720096382:get_sources [0Ksection_start:1720096382:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=64406 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1720096387:restore_cache [0Ksection_start:1720096387:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1338556)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=64565 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1338556 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1720096389:download_artifacts [0Ksection_start:1720096389:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338564/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338564/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338564/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338564/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338564/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338564/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250/J1338564_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d~caliper+gpu+coreneuron~legacy-unit~openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^/xavp7ouhjfi6uyqg7yobt4fcc7majw7q | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2286917/ccache | |
| Config file: /nvme/bbpcihpcproj12/2286917/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu Jul 4 14:33:14 2024 | |
| Local storage: | |
| Cache size (GB): 0.47 / 0.51 (92.50%) | |
| Files: 9691 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc~caliper+coreneuron+gpu~legacy-unit~openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/xavp7ouhjfi6uyqg7yobt4fcc7majw7q | |
| Concretized | |
| -------------------------------- | |
| - ifxma24 neuron@git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop%nvhpc@23.1~backtrace~caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi~openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] xavp7ou ^nmodl@git.2ad008f2dfd4f581f08b2234d2ddb5955744649c=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_gcc-12.3.0-skylake/nmodl-git.2ad008f2dfd4f581f08b2234d2ddb5955744649c_develop-xavp7o | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi | |
| ==> Installing neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop-ifxma24toeq53seeiaoejpmuwxocf56r [50/50] | |
| ==> No binary for neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop-ifxma24toeq53seeiaoejpmuwxocf56r found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop-ifxma24toeq53seeiaoejpmuwxocf56r | |
| Stage: 21.12s. Cmake: 2m 21.47s. Build: 20m 34.74s. Install: 16.82s. Post-install: 0.86s. Total: 23m 35.51s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_nvhpc-23.1-skylake/neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d_develop-ifxma2 | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be ifxma24toeq53seeiaoejpmuwxocf56r | |
| [32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2286917/ccache | |
| Config file: /nvme/bbpcihpcproj12/2286917/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu Jul 4 15:00:12 2024 | |
| Cacheable calls: 982 / 1087 (90.34%) | |
| Hits: 951 / 982 (96.84%) | |
| Direct: 508 / 951 (53.42%) | |
| Preprocessed: 443 / 951 (46.58%) | |
| Misses: 31 / 982 ( 3.16%) | |
| Uncacheable calls: 105 / 1087 ( 9.66%) | |
| Autoconf compile/link: 5 / 105 ( 4.76%) | |
| Called for linking: 87 / 105 (82.86%) | |
| Called for preprocessing: 2 / 105 ( 1.90%) | |
| Compilation failed: 2 / 105 ( 1.90%) | |
| No input file: 8 / 105 ( 7.62%) | |
| Preprocessing failed: 1 / 105 ( 0.95%) | |
| Successful lookups: | |
| Direct: 508 / 985 (51.57%) | |
| Preprocessed: 443 / 476 (93.07%) | |
| Local storage: | |
| Cache size (GB): 0.47 / 0.51 (92.44%) | |
| Files: 9802 | |
| Cleanups: 3 | |
| Hits: 951 / 984 (96.65%) | |
| Misses: 33 / 984 ( 3.35%) | |
| Reads: 1969 | |
| Writes: 430 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1720098014:step_script [0Ksection_start:1720098014:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:acc:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=108397 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aacc%3Alegacy-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1720098037:archive_cache [0Ksection_start:1720098037:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=108537 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1338564 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=108574 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1338564 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=108616 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1338564 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1720098038:upload_artifacts_on_success [0Ksection_start:1720098038:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1720098039:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1720096377:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1720096377:resolve_secrets [0Ksection_start:1720096377:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor355238357, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 220250, build ref , job ID 1338568 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1338568_PROD_P2160_CP19_C24 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2286919 | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1338568_PROD_P2160_CP19_C24 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250 --ntasks=2 --jobid=2286919 --cpus-per-task=8 --mem=160G | |
| section_end:1720096380:prepare_executor [0Ksection_start:1720096380:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i5n21 via bbpv1.epfl.ch... | |
| section_end:1720096383:prepare_script [0Ksection_start:1720096383:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1720096384:get_sources [0Ksection_start:1720096384:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=66899 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1720096389:restore_cache [0Ksection_start:1720096389:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1338556)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=67015 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1338556 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1720096390:download_artifacts [0Ksection_start:1720096390:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338568/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338568/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338568/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338568/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338568/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338568/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250/J1338568_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/xavp7ouhjfi6uyqg7yobt4fcc7majw7q | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2286919/ccache | |
| Config file: /nvme/bbpcihpcproj12/2286919/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu Jul 4 14:33:16 2024 | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (90.59%) | |
| Files: 10188 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared~sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/xavp7ouhjfi6uyqg7yobt4fcc7majw7q | |
| - ^caliper+cuda cuda_arch=70 | |
| Concretized | |
| -------------------------------- | |
| - 2bkygvu neuron@git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared~sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| - vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake | |
| [^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake | |
| [^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] xavp7ou ^nmodl@git.2ad008f2dfd4f581f08b2234d2ddb5955744649c=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| ==> Installing caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 [53/55] | |
| ==> No binary for caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 found: installing from source | |
| ==> Fetching https://github.com/LLNL/Caliper/archive/v2.11.0.tar.gz | |
| ==> No patches needed for caliper | |
| ==> caliper: Executing phase: 'cmake' | |
| ==> caliper: Executing phase: 'build' | |
| ==> caliper: Executing phase: 'install' | |
| ==> caliper: Successfully installed caliper-2.11.0-vjj3tplvh6es4rqhqhzfqqelewsp44m2 | |
| Stage: 2.39s. Cmake: 9.11s. Build: 8.16s. Install: 1.05s. Post-install: 0.18s. Total: 21.19s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_gcc-12.3.0-skylake/nmodl-git.2ad008f2dfd4f581f08b2234d2ddb5955744649c_develop-xavp7o | |
| ==> Installing neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop-2bkygvuspxbplskrkzlqbt5jo5n5gpjl [55/55] | |
| ==> No binary for neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop-2bkygvuspxbplskrkzlqbt5jo5n5gpjl found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop-2bkygvuspxbplskrkzlqbt5jo5n5gpjl | |
| Stage: 14.70s. Cmake: 1m 29.13s. Build: 15m 45.92s. Install: 18.54s. Post-install: 0.89s. Total: 17m 49.76s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_nvhpc-23.1-skylake/neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d_develop-2bkygv | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be 2bkygvuspxbplskrkzlqbt5jo5n5gpjl | |
| [32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2286919/ccache | |
| Config file: /nvme/bbpcihpcproj12/2286919/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu Jul 4 14:54:55 2024 | |
| Cacheable calls: 1145 / 1283 (89.24%) | |
| Hits: 1111 / 1145 (97.03%) | |
| Direct: 683 / 1111 (61.48%) | |
| Preprocessed: 428 / 1111 (38.52%) | |
| Misses: 34 / 1145 ( 2.97%) | |
| Uncacheable calls: 138 / 1283 (10.76%) | |
| Autoconf compile/link: 5 / 138 ( 3.62%) | |
| Called for linking: 104 / 138 (75.36%) | |
| Called for preprocessing: 4 / 138 ( 2.90%) | |
| Compilation failed: 2 / 138 ( 1.45%) | |
| No input file: 22 / 138 (15.94%) | |
| Preprocessing failed: 1 / 138 ( 0.72%) | |
| Successful lookups: | |
| Direct: 683 / 1144 (59.70%) | |
| Preprocessed: 428 / 460 (93.04%) | |
| Local storage: | |
| Cache size (GB): 0.45 / 0.51 (87.92%) | |
| Files: 9862 | |
| Cleanups: 3 | |
| Hits: 1111 / 1143 (97.20%) | |
| Misses: 32 / 1143 ( 2.80%) | |
| Reads: 2286 | |
| Writes: 412 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1720097697:step_script [0Ksection_start:1720097697:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:omp:legacy-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=92759 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp%3Alegacy-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1720097719:archive_cache [0Ksection_start:1720097719:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=92894 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1338568 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=92933 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1338568 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=92972 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1338568 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1720097720:upload_artifacts_on_success [0Ksection_start:1720097720:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1720097721:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1720096379:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1720096379:resolve_secrets [0Ksection_start:1720096379:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor852166152, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 220250, build ref , job ID 1338569 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1338569_PROD_P2160_CP20_C25 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=2:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2286920 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1338569_PROD_P2160_CP20_C25 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250 --time=2:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250 --ntasks=2 --jobid=2286920 --cpus-per-task=8 --mem=160G | |
| section_end:1720096380:prepare_executor [0Ksection_start:1720096380:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i5n23 via bbpv1.epfl.ch... | |
| section_end:1720096383:prepare_script [0Ksection_start:1720096383:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1720096384:get_sources [0Ksection_start:1720096384:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=244373 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1720096390:restore_cache [0Ksection_start:1720096390:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for build:nmodl (1338556)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=244477 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1338556 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1720096390:download_artifacts [0Ksection_start:1720096390:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338569/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338569/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338569/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338569/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338569/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338569/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250/J1338569_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install neuron%nvhpc ~rx3d+caliper+gpu+coreneuron~legacy-unit+openmp~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy ^caliper+cuda cuda_arch=70 ^/xavp7ouhjfi6uyqg7yobt4fcc7majw7q | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2286920/ccache | |
| Config file: /nvme/bbpcihpcproj12/2286920/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu Jul 4 14:33:16 2024 | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (90.34%) | |
| Files: 9857 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - neuron%nvhpc+caliper+coreneuron+gpu~legacy-unit+openmp~rx3d~shared+sympy+tests~unified build_type=FastDebug model_tests=channel-benchmark,olfactory,tqperf-heavy | |
| - ^/xavp7ouhjfi6uyqg7yobt4fcc7majw7q | |
| - ^caliper+cuda cuda_arch=70 | |
| Concretized | |
| -------------------------------- | |
| - yfvfaos neuron@git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop%nvhpc@23.1~backtrace+caliper+coreneuron+gpu~interviews~ipo~legacy-unit+mpi+openmp~prcellstate+python+report~rx3d~shared+sympy~sympyopt+tests~unified build_system=cmake build_type=FastDebug generator=make model_tests=channel-benchmark,olfactory,tqperf-heavy sanitizers=None arch=linux-rhel7-skylake | |
| [^] tj3mv5i ^binutils@2.41%gcc@12.3.0+gas+gold~gprofng~headers~interwork+ld~libiberty~lto~nls~pgo+plugins build_system=autotools compress_debug_sections=zlib libs=shared,static arch=linux-rhel7-skylake | |
| [^] 7jd6loj ^diffutils@3.9%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] e533uuv ^pkgconf@1.9.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] z7jpg7s ^zlib-ng@2.1.4%gcc@12.3.0+compat+opt build_system=autotools arch=linux-rhel7-skylake | |
| [^] aivjoo2 ^zstd@1.5.5%gcc@12.3.0+programs build_system=makefile compression=none libs=shared,static arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [e] rd65pst ^boost@1.83.0%gcc@12.3.0~atomic~chrono~clanglibcpp~container~context~contract~coroutine~date_time~debug~exception~fiber+filesystem~graph~graph_parallel~icu~iostreams~json~locale~log~math~mpi+multithreaded~nowide~numpy+pic~program_options~python~random~regex+serialization+shared~signals~singlethreaded~stacktrace~system~taggedlayout+test~thread~timer~type_erasure~versionedlayout~wave build_system=generic cxxstd=98 patches=a440f96 visibility=hidden arch=linux-rhel7-skylake | |
| - vjj3tpl ^caliper@2.11.0%gcc@12.3.0+adiak+cuda~fortran+gotcha~ipo+kokkos+libdw~libpfm+libunwind+mpi+papi~rocm+sampler+shared~sosflow~tests~variorum~vtune build_system=cmake build_type=Release cuda_arch=70 generator=make arch=linux-rhel7-skylake | |
| [^] hficqq7 ^adiak@0.4.0%gcc@12.3.0~ipo+mpi+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] a46bi6u ^elfutils@0.189%gcc@12.3.0~debuginfod+exeprefix+nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] wtcpudz ^m4@1.4.19%gcc@12.3.0+sigsegv build_system=autotools patches=9dc5fbd,bfdffa7 arch=linux-rhel7-skylake | |
| [^] rytdxw5 ^libsigsegv@2.14%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] 7xnekxr ^libunwind@1.6.2%gcc@12.3.0~block_signals~conservative_checks~cxx_exceptions~debug~debug_frame+docs~pic+tests+weak_backtrace~xz~zlib build_system=autotools components=none libs=shared,static arch=linux-rhel7-skylake | |
| [^] vol6npp ^papi@6.0.0.1%gcc@12.3.0~cuda~debug+example~infiniband~lmsensors~nvml~powercap~rapl~rocm~rocm_smi~sde+shared~static_tools build_system=autotools arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 3fsjp3m ^cuda@12.0.0%gcc@12.3.0~allow-unsupported-compilers~dev build_system=generic arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] nbi5w5c ^gettext@0.22.3%gcc@12.3.0+bzip2+curses+git~libunistring+libxml2+pic+shared+tar+xz build_system=autotools arch=linux-rhel7-skylake | |
| [^] vdqwmgi ^bzip2@1.0.8%gcc@12.3.0~debug~pic+shared build_system=generic arch=linux-rhel7-skylake | |
| [^] nv4xh4v ^libiconv@1.17%gcc@12.3.0 build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] oh2g4in ^libxml2@2.10.3%gcc@12.3.0+pic~python+shared build_system=autotools arch=linux-rhel7-skylake | |
| [^] zz4acmm ^tar@1.34%gcc@12.3.0 build_system=autotools zip=pigz arch=linux-rhel7-skylake | |
| [^] dwjcguu ^pigz@2.7%gcc@12.3.0 build_system=makefile arch=linux-rhel7-skylake | |
| [^] wwn5enj ^xz@5.4.1%gcc@12.3.0~pic build_system=autotools libs=shared,static arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [e] h6t3hgb ^hpe-mpi@2.27.p1.hmpt%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| - az6cwid ^libsonata-report@git.5602aadfa710d6766ce23cd151a1855190271bd8=develop%nvhpc@23.1~ipo+mpi build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5o77yem ^hdf5@1.14.3%gcc@12.3.0+cxx~fortran+hl~ipo~java~map+mpi+shared~szip~threadsafe+tools api=default build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 6kdbhvi ^ncurses@6.4%gcc@12.3.0~symlinks+termlib abi=none build_system=autotools arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [+] xavp7ou ^nmodl@git.2ad008f2dfd4f581f08b2234d2ddb5955744649c=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] x733hwb ^py-mpi4py@3.1.4%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] m3dslef ^py-cython@0.29.36%gcc@12.3.0 build_system=python_pip patches=c4369ad arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] elr5pnt ^py-numpy@1.26.1%gcc@12.3.0 build_system=python_pip patches=873745d arch=linux-rhel7-skylake | |
| [e] w2ldcy2 ^intel-oneapi-mkl@2023.2.0%gcc@12.3.0~cluster+envmods~ilp64+shared build_system=generic mpi_family=none threads=none arch=linux-rhel7-skylake | |
| [^] 3y7uuwr ^py-pyproject-metadata@0.7.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] lrf2u3h ^py-pytest@7.3.2%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] mvxx6gh ^py-iniconfig@2.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] cbpzath ^py-hatch-vcs@0.3.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 2o7gdvi ^py-hatchling@1.21.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6domhtg ^py-editables@0.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] edobf76 ^py-pathspec@0.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] a6ialdh ^py-trove-classifiers@2023.8.7%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] jurd5ga ^py-calver@2022.6.26%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 6su7kvx ^py-pluggy@1.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] z5nf6n2 ^py-pytest-cov@4.0.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] wuxetkw ^py-coverage@7.2.6%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] pdugg7r ^readline@8.2%gcc@12.3.0 build_system=autotools patches=bbf97f1 arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250, but it is owned by 0 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zlib-ng-2.1.4-z7jpg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/zstd-1.5.5-aivjoo | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/boost-1.83.0-2quv7w (external boost-1.83.0-rd65pstwb56uftszduzg7lsiq4za4lnn) | |
| ==> hpe-mpi@2.27.p1.hmpt : has external module in ['hpe-mpi/2.27.p1.hmpt'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/hpe-mpi-2.27.p1.hmpt-6rr256 (external hpe-mpi-2.27.p1.hmpt-h6t3hgbguhacajbyzlp43xpawsnreb3m) | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> cuda@12.0.0 : has external module in ['cuda/12.0.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cuda-12.0.0-ucajzb (external cuda-12.0.0-3fsjp3mjnqnrrtfa6vspkddejnyei5sa) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/bzip2-1.0.8-vdqwmg | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libiconv-1.17-nv4xh4 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/xz-5.4.1-wwn5en | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/ncurses-6.4-6kdbhv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pkgconf-1.9.5-e533uu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gmake-4.4.1-swjylu | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> intel-oneapi-mkl@2023.2.0 : has external module in ['intel-oneapi-mkl/2023.2.0'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/intel-oneapi-mkl-2023.2.0-twl2n4 (external intel-oneapi-mkl-2023.2.0-w2ldcy2y2urm3uaa7omu3w7nhwsqt433) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libunwind-1.6.2-7xnekx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libxml2-2.10.3-oh2g4i | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/papi-6.0.0.1-vol6np | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/hdf5-1.14.3-5o77ye | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/binutils-2.41-tj3mv5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/readline-8.2-pdugg7 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/adiak-0.4.0-hficqq | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/pigz-2.7-dwjcgu | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpi4py-3.1.4-x733hw | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-setuptools-68.0.0-p3xbqx | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-packaging-23.1-uqml2t | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pip-23.1.2-77ku3v | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/tar-1.34-zz4acm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-iniconfig-2.0.0-mvxx6g | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-coverage-7.2.6-wuxetk | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-numpy-1.26.1-elr5pn | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pluggy-1.0.0-6su7kv | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/gettext-0.22.3-nbi5w5 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-7.3.2-lrf2u3 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/elfutils-0.189-a46bi6 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pytest-cov-4.0.0-z5nf6n | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_gcc-12.3.0-skylake/nmodl-git.2ad008f2dfd4f581f08b2234d2ddb5955744649c_develop-xavp7o | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_nvhpc-23.1-skylake/libsonata-report-git.5602aadfa710d6766ce23cd151a1855190271bd8_develop-az6cwi | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_gcc-12.3.0-skylake/caliper-2.11.0-vjj3tp | |
| ==> Installing neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop-yfvfaosflxe6fdr3z2gt4htwaw3juavh [55/55] | |
| ==> No binary for neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop-yfvfaosflxe6fdr3z2gt4htwaw3juavh found: installing from source | |
| ==> No patches needed for neuron | |
| ==> neuron: Executing phase: 'cmake' | |
| ==> neuron: Executing phase: 'build' | |
| ==> neuron: Executing phase: 'install' | |
| ==> neuron: Successfully installed neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d=develop-yfvfaosflxe6fdr3z2gt4htwaw3juavh | |
| Stage: 21.51s. Cmake: 1m 20.33s. Build: 15m 23.17s. Install: 17.01s. Post-install: 0.89s. Total: 17m 23.62s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_nvhpc-23.1-skylake/neuron-git.8c3ba45b8519ef3282a064881fff2b0c83648c3d_develop-yfvfao | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be yfvfaosflxe6fdr3z2gt4htwaw3juavh | |
| [32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2286920/ccache | |
| Config file: /nvme/bbpcihpcproj12/2286920/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu Jul 4 14:54:30 2024 | |
| Cacheable calls: 988 / 1095 (90.23%) | |
| Hits: 955 / 988 (96.66%) | |
| Direct: 522 / 955 (54.66%) | |
| Preprocessed: 433 / 955 (45.34%) | |
| Misses: 33 / 988 ( 3.34%) | |
| Uncacheable calls: 107 / 1095 ( 9.77%) | |
| Autoconf compile/link: 5 / 107 ( 4.67%) | |
| Called for linking: 89 / 107 (83.18%) | |
| Called for preprocessing: 2 / 107 ( 1.87%) | |
| Compilation failed: 2 / 107 ( 1.87%) | |
| No input file: 8 / 107 ( 7.48%) | |
| Preprocessing failed: 1 / 107 ( 0.93%) | |
| Successful lookups: | |
| Direct: 522 / 987 (52.89%) | |
| Preprocessed: 433 / 464 (93.32%) | |
| Local storage: | |
| Cache size (GB): 0.46 / 0.51 (88.99%) | |
| Files: 9769 | |
| Cleanups: 2 | |
| Hits: 955 / 986 (96.86%) | |
| Misses: 31 / 986 ( 3.14%) | |
| Reads: 1973 | |
| Writes: 416 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1720097672:step_script [0Ksection_start:1720097672:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:neuron:nmodl:nvhpc:omp-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=269018 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Aneuron%3Anmodl%3Anvhpc%3Aomp-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1720097694:archive_cache [0Ksection_start:1720097694:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=269148 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1338569 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=269184 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1338569 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=269227 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1338569 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1720097696:upload_artifacts_on_success [0Ksection_start:1720097696:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1720097696:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1720096013:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1720096013:resolve_secrets [0Ksection_start:1720096013:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor4009121494, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 220250, build ref , job ID 1338556 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250, optional exclusive flag , optional cpus per task flag --cpus-per-task=8, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1338556_PROD_P2160_CP14_C8 | |
| Job parameters: memory=160G, cpus_per_task=8, duration=1:00:00, constraint=cpu ntasks=2 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2286882 | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=2 --cpus-per-task=8 --mem=160G --job-name=GL_J1338556_PROD_P2160_CP14_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250 --ntasks=2 --jobid=2286882 --cpus-per-task=8 --mem=160G | |
| section_end:1720096015:prepare_executor [0Ksection_start:1720096015:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i5n21 via bbpv1.epfl.ch... | |
| section_end:1720096018:prepare_script [0Ksection_start:1720096018:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1720096018:get_sources [0Ksection_start:1720096018:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| Using git from spack modules | |
| [32;1mChecking cache for build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=62740 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| cache.zip is up to date [0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1720096023:restore_cache [0Ksection_start:1720096023:download_artifacts [0K[0K[36;1mDownloading artifacts[0;m[0;m | |
| Using git from spack modules | |
| [32;1mDownloading artifacts for spack_setup (1338552)...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=62845 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| Downloading artifacts from coordinator... ok [0;m id[0;m=1338552 responseStatus[0;m=200 OK token[0;m=glcbt-64 | |
| section_end:1720096024:download_artifacts [0Ksection_start:1720096024:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ SPACK_BUILD="${PWD}/spack-build"[0;m | |
| [32;1m$ env -0 | sort -z | xargs -0 -L 1 echo > initial_environment.env[0;m | |
| [32;1m$ . ${SPACK_ROOT}/share/spack/setup-env.sh[0;m | |
| [32;1m$ export SPACK_USER_CONFIG_PATH=${PWD}/spack-config[0;m | |
| [32;1m$ mkdir ${SPACK_USER_CONFIG_PATH}[0;m | |
| [32;1m$ cat > ${SPACK_USER_CONFIG_PATH}/config.yaml << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config add concretizer:reuse:false[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame config[0;m | |
| --- config: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338556/spack-config/config.yaml:2 build_stage: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338556/spack-config/config.yaml:3 - /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338556/spack-build | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338556/spack-config/config.yaml:4 source_cache: /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338556/spack-source-cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/config.yaml:2 ccache: True | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:2 install_tree: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:3 root: $user_cache_path/software | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:4 projections: | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:5 all: install_{compiler.name}-{compiler.version}-{target}/{name}-{version}-{hash:6} | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:7 environments_root: $user_cache_path/environments | |
| /gpfs/bbp.cscs.ch/ssd/apps/bsd//config/config.yaml:9 build_jobs: 8 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:18 extensions: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:19 - $spack/bluebrain/spack-scripting | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:37 template_dirs: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:38 - $spack/share/spack/templates | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:41 license_dir: $spack/etc/spack/licenses | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:81 test_stage: $user_cache_path/test | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:94 misc_cache: $user_cache_path/cache | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:100 connect_timeout: 10 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:105 verify_ssl: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:113 suppress_gpg_warnings: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:119 install_missing_compilers: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:124 checksum: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:129 deprecated: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:134 dirty: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:142 build_language: C | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:151 locks: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:156 url_fetch_method: urllib | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:185 concretizer: clingo | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:192 db_lock_timeout: 60 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:200 package_lock_timeout: null | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:205 shared_linking: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:210 type: rpath | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:216 bind: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:221 allow_sgid: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:227 install_status: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:231 binary_index_ttl: 600 | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:233 flags: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:235 keep_werror: none | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:240 aliases: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:241 concretise: concretize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:242 containerise: containerize | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/config.yaml:243 rm: remove | |
| _builtin debug: False | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} config blame concretizer[0;m | |
| --- concretizer: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338556/spack-config/concretizer.yaml:2 reuse: False | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:23 targets: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:28 granularity: microarchitectures | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:32 host_compatible: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:38 unify: True | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:40 duplicates: | |
| /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552/spack/etc/spack/defaults/concretizer.yaml:44 strategy: minimal | |
| [32;1m$ export XDG_CONFIG_HOME=${CI_BUILDS_DIR}/J${CI_JOB_ID}_local_config[0;m | |
| [32;1m$ echo "Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (${XDG_CONFIG_HOME})"[0;m | |
| Configuring git to use CI_JOB_TOKEN to access git@bbpgitlab.epfl.ch (/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250/J1338556_local_config) | |
| [32;1m$ mkdir -p "${XDG_CONFIG_HOME}/git"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = git@bbpgitlab.epfl.ch:" > "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ echo -e "[url \"https://gitlab-ci-token:${CI_JOB_TOKEN}@bbpgitlab.epfl.ch/\"]\n insteadOf = ssh://git@bbpgitlab.epfl.ch/" >> "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [32;1m$ cat "${XDG_CONFIG_HOME}/git/config"[0;m | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = git@bbpgitlab.epfl.ch: | |
| [url "https://gitlab-ci-token:[MASKED]@bbpgitlab.epfl.ch/"] | |
| insteadOf = ssh://git@bbpgitlab.epfl.ch/ | |
| [32;1m$ SPACK_FULL_SPEC="${SPACK_PACKAGE}${SPACK_PACKAGE_COMPILER:+%}${SPACK_PACKAGE_COMPILER} ${SPACK_PACKAGE_SPEC} ${SPACK_PACKAGE_DEPENDENCIES} ${SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB}"[0;m | |
| [32;1m$ echo "Preparing to install ${SPACK_FULL_SPEC}"[0;m | |
| Preparing to install nmodl%gcc ~legacy-unit | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ module load unstable ccache[0;m | |
| [32;1m$ export CCACHE_BASEDIR=$(realpath -P ${CI_BUILDS_DIR})[0;m | |
| [32;1m$ echo CCACHE_BASEDIR=${CCACHE_BASEDIR}[0;m | |
| CCACHE_BASEDIR=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250 | |
| [32;1m$ export CCACHE_MAXSIZE=512M[0;m | |
| [32;1m$ export CCACHE_DIR="${TMPDIR}/ccache"[0;m | |
| [32;1m$ mkdir -p ${CCACHE_DIR}[0;m | |
| [32;1m$ if [ -f ${CI_PROJECT_DIR}/ccache.tar ]; then[0;m | |
| [32;1m$ tar -C "${CCACHE_DIR}" -xf "${CI_PROJECT_DIR}/ccache.tar"[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ ccache --zero-stats[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2286882/ccache | |
| Config file: /nvme/bbpcihpcproj12/2286882/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu Jul 4 14:27:10 2024 | |
| Local storage: | |
| Cache size (GB): 0.44 / 0.51 (86.55%) | |
| Files: 5494 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ fi[0;m | |
| [32;1m$ module load unstable git ${SPACK_EXTRA_MODULES}[0;m | |
| [32;1m$ spack ${SPACK_EXTRA_FLAGS} spec -Il ${SPACK_FULL_SPEC}[0;m | |
| Input spec | |
| -------------------------------- | |
| - nmodl%gcc~legacy-unit | |
| Concretized | |
| -------------------------------- | |
| - xavp7ou nmodl@git.2ad008f2dfd4f581f08b2234d2ddb5955744649c=develop%gcc@12.3.0~ipo~legacy-unit~llvm~llvm_cuda~python~tests build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [e] yn5fbwg ^bison@3.8.2%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] pywly2v ^catch2@3.4.0%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] swjylul ^gmake@4.4.1%gcc@12.3.0~guile build_system=generic arch=linux-rhel7-skylake | |
| [^] ud3echq ^cli11@2.3.2%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [e] b5zzpr3 ^cmake@3.27.7%gcc@12.3.0~doc+ncurses+ownlibs build_system=generic build_type=Release arch=linux-rhel7-skylake | |
| [e] 77vzaxs ^flex@2.6.3%gcc@12.3.0+lex~nls build_system=autotools arch=linux-rhel7-skylake | |
| [^] evtttrh ^fmt@10.1.1%gcc@12.3.0~ipo+pic~shared build_system=cmake build_type=Release cxxstd=11 generator=make arch=linux-rhel7-skylake | |
| [e] omn6mm4 ^ninja@1.11.1%gcc@12.3.0+re2c build_system=generic arch=linux-rhel7-skylake | |
| [^] teske2k ^nlohmann-json@3.9.1%gcc@12.3.0~ipo+multiple_headers build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [^] 5dylnca ^py-find-libpython@0.3.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 77ku3vv ^py-pip@23.1.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] p3xbqxj ^py-setuptools@68.0.0%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] aj3rk42 ^py-wheel@0.41.2%gcc@12.3.0 build_system=generic arch=linux-rhel7-skylake | |
| [^] 7validy ^py-jinja2@3.1.2%gcc@12.3.0~i18n build_system=python_pip arch=linux-rhel7-skylake | |
| [^] r3ehtmw ^py-markupsafe@2.1.3%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] tabj2mo ^py-pybind11@2.11.1%gcc@12.3.0~ipo build_system=cmake build_type=Release generator=ninja arch=linux-rhel7-skylake | |
| [^] 2inh3rt ^py-pyyaml@5.4.1%gcc@12.3.0+libyaml build_system=python_pip arch=linux-rhel7-skylake | |
| [^] bzl4xcz ^libyaml@0.2.5%gcc@12.3.0 build_system=autotools arch=linux-rhel7-skylake | |
| [^] t5tovex ^py-sympy@1.11.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 4fflyib ^py-mpmath@1.2.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] sokbfzv ^py-setuptools-scm@8.0.4%gcc@12.3.0+toml build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 2sazdxk ^git@2.42.0%gcc@12.3.0+man+nls+perl+subtree~svn~tcltk build_system=autotools arch=linux-rhel7-skylake | |
| [^] uqml2to ^py-packaging@23.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] h6f6feu ^py-flit-core@3.9.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] xwl5l6q ^py-tomli@2.0.1%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [^] 275jtek ^py-typing-extensions@4.8.0%gcc@12.3.0 build_system=python_pip arch=linux-rhel7-skylake | |
| [e] 5wl76vp ^python@3.11.6%gcc@12.3.0+bz2+crypt+ctypes+dbm~debug+libxml2+lzma~nis~optimizations+pic+pyexpat+pythoncmd+readline+shared+sqlite3+ssl~tkinter+uuid+zlib build_system=generic patches=13fa8bf,b0615b2,ebdca64,f2fd060 arch=linux-rhel7-skylake | |
| [^] ihotvbs ^spdlog@1.12.0%gcc@12.3.0+fmt_external~ipo+shared build_system=cmake build_type=Release generator=make arch=linux-rhel7-skylake | |
| [32;1m$ set -o pipefail[0;m | |
| [32;1m$ (spack ${SPACK_EXTRA_FLAGS} install --overwrite -y -j${SLURM_CPUS_PER_TASK} --log-format=junit --log-file=${CI_PROJECT_DIR}/install.xml --keep-stage ${SPACK_FULL_SPEC} | tee log) || install_failed=1[0;m | |
| ==> Warning: Expected user 904556 to own /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250, but it is owned by 0 | |
| ==> bison@3.8.2 : has external module in ['bison/3.8.2'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/bison-3.8.2-qcx3sg (external bison-3.8.2-yn5fbwgteilgqg6b62shkhkjg3hlwmrq) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/catch2-3.4.0-pywly2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/cli11-2.3.2-ud3ech | |
| ==> cmake@3.27.7 : has external module in ['cmake/3.27.7'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/cmake-3.27.7-slyoes (external cmake-3.27.7-b5zzpr3mwm7jxv6bvvrs6zpeg62cfhbu) | |
| ==> flex@2.6.3 : has external module in ['flex/2.6.3'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/flex-2.6.3-edx4lf (external flex-2.6.3-77vzaxsa3g7wr3omktr4skpetx5ds4pt) | |
| ==> ninja@1.11.1 : has external module in ['ninja/1.11.1'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ninja-1.11.1-nxtlgo (external ninja-1.11.1-omn6mm4a3zsbpbkptvdwxs6kkrh6yafw) | |
| ==> python@3.11.6 : has external module in ['python/3.11.6'] | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/python-3.11.6-bj4i6m (external python-3.11.6-5wl76vphfvpcapfaipipf7xn2xylnc4o) | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/libyaml-0.2.5-bzl4xc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/nlohmann-json-3.9.1-teske2 | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/fmt-10.1.1-evtttr | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pybind11-2.11.1-tabj2m | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-markupsafe-2.1.3-r3ehtm | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-find-libpython-0.3.1-5dylnc | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-mpmath-1.2.1-4fflyi | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-pyyaml-5.4.1-2inh3r | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/spdlog-1.12.0-ihotvb | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-jinja2-3.1.2-7valid | |
| [+] /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_applications/install_gcc-12.3.0-skylake/py-sympy-1.11.1-t5tove | |
| ==> Installing nmodl-git.2ad008f2dfd4f581f08b2234d2ddb5955744649c=develop-xavp7ouhjfi6uyqg7yobt4fcc7majw7q [19/19] | |
| ==> No binary for nmodl-git.2ad008f2dfd4f581f08b2234d2ddb5955744649c=develop-xavp7ouhjfi6uyqg7yobt4fcc7majw7q found: installing from source | |
| ==> No patches needed for nmodl | |
| ==> nmodl: Executing phase: 'cmake' | |
| ==> nmodl: Executing phase: 'build' | |
| ==> nmodl: Executing phase: 'install' | |
| ==> nmodl: Successfully installed nmodl-git.2ad008f2dfd4f581f08b2234d2ddb5955744649c=develop-xavp7ouhjfi6uyqg7yobt4fcc7majw7q | |
| Stage: 52.73s. Cmake: 14.65s. Build: 1m 34.78s. Install: 3.31s. Post-install: 0.48s. Total: 2m 46.16s | |
| [+] /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/software/install_gcc-12.3.0-skylake/nmodl-git.2ad008f2dfd4f581f08b2234d2ddb5955744649c_develop-xavp7o | |
| [32;1m$ set +o pipefail[0;m | |
| [32;1m$ chmod -R g+rX "${SPACK_BUILD}"[0;m | |
| [32;1m$ if [[ ${install_failed} == 1 ]]; then exit 1; fi[0;m | |
| [32;1m$ SPACK_INSTALLED_HASH=$(spack ${SPACK_EXTRA_FLAGS} find --format "{hash}" /$(sed -ne '${s/.*-//;p}' log))[0;m | |
| [32;1m$ echo "Determined the installed hash to be ${SPACK_INSTALLED_HASH}"[0;m | |
| Determined the installed hash to be xavp7ouhjfi6uyqg7yobt4fcc7majw7q | |
| [32;1m$ SPACK_STAGE_DIR=$(spack location -s "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_BUILD_DIR=$(spack location -b "${SPACK_FULL_SPEC}")[0;m | |
| [32;1m$ SPACK_SOURCE_DIR=${SPACK_STAGE_DIR}/spack-src[0;m | |
| [32;1m$ if [ ${SPACK_USE_CCACHE+x} ]; then[0;m | |
| [32;1m$ ccache --cleanup[0;m | |
| [32;1m$ ccache --show-stats --verbose[0;m | |
| Cache directory: /nvme/bbpcihpcproj12/2286882/ccache | |
| Config file: /nvme/bbpcihpcproj12/2286882/ccache/ccache.conf | |
| System config file: /gpfs/bbp.cscs.ch/ssd/apps/bsd/2024-02-01/stage_externals/install_gcc-12.3.0-skylake/ccache-4.7.4-eompz5/etc/ccache.conf | |
| Stats updated: Thu Jul 4 14:32:27 2024 | |
| Cacheable calls: 172 / 245 (70.20%) | |
| Hits: 170 / 172 (98.84%) | |
| Direct: 62 / 170 (36.47%) | |
| Preprocessed: 108 / 170 (63.53%) | |
| Misses: 2 / 172 ( 1.16%) | |
| Uncacheable calls: 73 / 245 (29.80%) | |
| Called for linking: 59 / 73 (80.82%) | |
| Compilation failed: 3 / 73 ( 4.11%) | |
| No input file: 6 / 73 ( 8.22%) | |
| Preprocessing failed: 5 / 73 ( 6.85%) | |
| Successful lookups: | |
| Direct: 62 / 180 (34.44%) | |
| Preprocessed: 108 / 113 (95.58%) | |
| Local storage: | |
| Cache size (GB): 0.44 / 0.51 (86.55%) | |
| Files: 5498 | |
| Hits: 170 / 175 (97.14%) | |
| Misses: 5 / 175 ( 2.86%) | |
| Reads: 355 | |
| Writes: 4 | |
| [32;1m$ tar -C "${CCACHE_DIR}" -cf "${CI_PROJECT_DIR}/ccache.tar" .[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ touch ${SPACK_STAGE_DIR}/spack-configure-args.txt[0;m | |
| [32;1m$ cp ${SPACK_STAGE_DIR}/spack-{build-env,build-out,configure-args}.txt ${CI_PROJECT_DIR}/[0;m | |
| [32;1m$ echo "SPACK_BUILD_DIR=${SPACK_BUILD_DIR}" > ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_FULL_SPEC=${SPACK_FULL_SPEC}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_SOURCE_DIR=${SPACK_SOURCE_DIR}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ SPACK_PACKAGE_SLUGIFY=$(echo -n ${SPACK_PACKAGE} | tr -c '[:alnum:]' '_' | tr '[:lower:]' '[:upper:]')[0;m | |
| [32;1m$ echo "${SPACK_PACKAGE_SLUGIFY}_INSTALLED_HASH=${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ echo "SPACK_PACKAGE_DEPENDENCY_ON_PREVIOUS_JOB=^/${SPACK_INSTALLED_HASH}" >> ${CI_PROJECT_DIR}/spack_build_info.env[0;m | |
| [32;1m$ num_failures=$(module load unstable python-dev; python -c "from lxml import etree; xml = etree.parse('${CI_PROJECT_DIR}/install.xml'); print(sum(1 for _ in xml.getroot().iter('failure')) + sum(1 for _ in xml.getroot().iter('error')))")[0;m | |
| [32;1m$ if [[ ${num_failures} > 0 ]]; then exit ${num_failures}; fi[0;m | |
| section_end:1720096349:step_script [0Ksection_start:1720096349:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mCreating cache build:nmodl-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=65973 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| ccache.tar: found 1 matching files and directories[0;m | |
| Uploading cache.zip to https://bbpobjectstorage.epfl.ch/gitlab-runners-cache/project/2160/build%3Anmodl-1-non_protected[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1720096372:archive_cache [0Ksection_start:1720096372:upload_artifacts_on_success [0K[0K[36;1mUploading artifacts for successful job[0;m[0;m | |
| Using git from spack modules | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=66108 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| initial_environment.env: found 1 matching files and directories[0;m | |
| spack-build-env.txt: found 1 matching files and directories[0;m | |
| spack-build-out.txt: found 1 matching files and directories[0;m | |
| spack-configure-args.txt: found 1 matching files and directories[0;m | |
| Uploading artifacts as "archive" to coordinator... ok[0;m id[0;m=1338556 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=66150 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| install.xml: found 1 matching files and directories[0;m | |
| Uploading artifacts as "junit" to coordinator... ok[0;m id[0;m=1338556 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| [32;1mUploading artifacts...[0;m | |
| Runtime platform [0;m arch[0;m=amd64 os[0;m=linux pid[0;m=66190 revision[0;m=58ba2b95 version[0;m=14.2.0 | |
| spack_build_info.env: found 1 matching files and directories[0;m | |
| spack_clone_variables.env: found 1 matching files and directories[0;m | |
| Uploading artifacts as "dotenv" to coordinator... ok[0;m id[0;m=1338556 responseStatus[0;m=201 Created token[0;m=glcbt-64 | |
| section_end:1720096373:upload_artifacts_on_success [0Ksection_start:1720096373:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| Using git from spack modules | |
| section_end:1720096374:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.4.0 (43b2dc3d)[0;m | |
| [0K on macos-arm64 vGzz-bdp[0;m | |
| section_start:1720095680:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1720095680:resolve_secrets [0Ksection_start:1720095680:prepare_executor [0K[0K[36;1mPreparing the "shell" executor[0;m[0;m | |
| [0KUsing Shell executor...[0;m | |
| section_end:1720095680:prepare_executor [0Ksection_start:1720095680:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Running on bbpmacglr01.bbp.epfl.ch... | |
| section_end:1720095680:prepare_script [0Ksection_start:1720095680:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| [32;1mFetching changes with git depth set to 20...[0;m | |
| Initialized empty Git repository in /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/.git/ | |
| [32;1mCreated fresh repository.[0;m | |
| [32;1mChecking out 8c3ba45b as nmodl-include-header-cleanup...[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1720095682:get_sources [0Ksection_start:1720095682:restore_cache [0K[0K[36;1mRestoring cache[0;m[0;m | |
| [32;1mChecking cache for mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-nmodl-include-header-cleanup-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=arm64 os[0;m=darwin pid[0;m=62746 revision[0;m=43b2dc3d version[0;m=15.4.0 | |
| No URL provided, cache will not be downloaded from shared cache server. Instead a local version of cache will be extracted.[0;m | |
| [32;1mSuccessfully extracted cache[0;m | |
| section_end:1720095692:restore_cache [0Ksection_start:1720095692:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [32;1m$ cat > resolve_shim.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ real_python=$(python3 resolve_shim.py)[0;m | |
| [32;1m$ echo "python3=$(command -v python3) is really ${real_python}"[0;m | |
| python3=/opt/homebrew/bin/python3 is really /opt/homebrew/Cellar/python@3.10/3.10.13_1/Frameworks/Python.framework/Versions/3.10/Resources/Python.app/Contents/MacOS/Python | |
| [32;1m$ PYTHONEXECUTABLE=${real_python} ${real_python} -mvenv venv[0;m | |
| [32;1m$ venv/bin/python3 -m ensurepip --upgrade --default-pip[0;m | |
| Looking in links: /var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpz49v5by9 | |
| Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpz49v5by9/setuptools-68.2.2-py3-none-any.whl | |
| Processing /private/var/folders/dm/mrnbn5ld56v61w1_hpbmskfw0000gp/T/tmpz49v5by9/pip-23.3.1-py3-none-any.whl | |
| Installing collected packages: setuptools, pip | |
| Successfully installed pip-23.3.1 setuptools-68.2.2 | |
| [32;1m$ git submodule update --init --recursive --force --depth 1 -- external/nmodl[0;m | |
| Submodule 'external/nmodl' (https://github.com/BlueBrain/nmodl) registered for path 'external/nmodl' | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl'... | |
| From https://github.com/BlueBrain/nmodl | |
| * branch 2ad008f2dfd4f581f08b2234d2ddb5955744649c -> FETCH_HEAD | |
| Submodule path 'external/nmodl': checked out '2ad008f2dfd4f581f08b2234d2ddb5955744649c' | |
| Submodule 'cmake/hpc-coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/nmodl/cmake/hpc-coding-conventions' | |
| Submodule 'ext/backward' (https://github.com/bombela/backward-cpp.git) registered for path 'external/nmodl/ext/backward' | |
| Submodule 'ext/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/nmodl/ext/catch2' | |
| Submodule 'ext/cli11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/nmodl/ext/cli11' | |
| Submodule 'ext/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/nmodl/ext/eigen' | |
| Submodule 'ext/fmt' (https://github.com/fmtlib/fmt.git) registered for path 'external/nmodl/ext/fmt' | |
| Submodule 'ext/json' (https://github.com/nlohmann/json.git) registered for path 'external/nmodl/ext/json' | |
| Submodule 'ext/pybind11' (https://github.com/pybind/pybind11.git) registered for path 'external/nmodl/ext/pybind11' | |
| Submodule 'ext/spdlog' (https://github.com/gabime/spdlog) registered for path 'external/nmodl/ext/spdlog' | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/cmake/hpc-coding-conventions'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/ext/backward'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/ext/catch2'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/ext/cli11'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/ext/eigen'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/ext/fmt'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/ext/json'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/ext/pybind11'... | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/ext/spdlog'... | |
| From https://github.com/BlueBrain/hpc-coding-conventions | |
| * branch f8f8d69a66c23978d1c9c5dce62de79466f26e5d -> FETCH_HEAD | |
| Submodule path 'external/nmodl/cmake/hpc-coding-conventions': checked out 'f8f8d69a66c23978d1c9c5dce62de79466f26e5d' | |
| Submodule path 'external/nmodl/ext/backward': checked out '51f0700452cf71c57d43c2d028277b24cde32502' | |
| From https://github.com/catchorg/Catch2 | |
| * branch 8ac8190e494a381072c89f5e161b92a08d98b37b -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b' | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch f4d0731cebb123ff0ace712c099dffbcd2c58e5a -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/cli11': checked out 'f4d0731cebb123ff0ace712c099dffbcd2c58e5a' | |
| From https://gitlab.com/libeigen/eigen | |
| * branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
| From https://github.com/fmtlib/fmt | |
| * branch e69e5f977d458f2650bb346dadf2ad30c5320281 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/fmt': checked out 'e69e5f977d458f2650bb346dadf2ad30c5320281' | |
| From https://github.com/nlohmann/json | |
| * branch 9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03 -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/json': checked out '9cca280a4d0ccf0c08f47a99aa71d1b0e52f8d03' | |
| From https://github.com/pybind/pybind11 | |
| * branch 3e9dfa2866941655c56877882565e7577de6fc7b -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/pybind11': checked out '3e9dfa2866941655c56877882565e7577de6fc7b' | |
| From https://github.com/gabime/spdlog | |
| * branch 7c02e204c92545f869e2f04edaab1f19fe8b19fd -> FETCH_HEAD | |
| Submodule path 'external/nmodl/ext/spdlog': checked out '7c02e204c92545f869e2f04edaab1f19fe8b19fd' | |
| [32;1m$ venv/bin/pip install --upgrade -r external/nmodl/requirements.txt[0;m | |
| Ignoring importlib-metadata: markers 'python_version < "3.9"' don't match your environment | |
| Ignoring importlib-resources: markers 'python_version < "3.9"' don't match your environment | |
| Collecting scikit-build-core (from -r external/nmodl/requirements.txt (line 2)) | |
| Using cached scikit_build_core-0.9.8-py3-none-any.whl.metadata (19 kB) | |
| Collecting setuptools-scm>=8.0 (from -r external/nmodl/requirements.txt (line 3)) | |
| Using cached setuptools_scm-8.1.0-py3-none-any.whl.metadata (6.6 kB) | |
| Collecting Jinja2>=2.9.3 (from -r external/nmodl/requirements.txt (line 4)) | |
| Using cached jinja2-3.1.4-py3-none-any.whl.metadata (2.6 kB) | |
| Collecting PyYAML>=3.13 (from -r external/nmodl/requirements.txt (line 5)) | |
| Using cached PyYAML-6.0.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (2.1 kB) | |
| Collecting find_libpython (from -r external/nmodl/requirements.txt (line 7)) | |
| Using cached find_libpython-0.4.0-py3-none-any.whl.metadata (2.8 kB) | |
| Collecting sympy>=1.3 (from -r external/nmodl/requirements.txt (line 8)) | |
| Using cached sympy-1.12.1-py3-none-any.whl.metadata (12 kB) | |
| Collecting pytest<=8.1.1 (from -r external/nmodl/requirements.txt (line 12)) | |
| Using cached pytest-8.1.1-py3-none-any.whl.metadata (7.6 kB) | |
| Collecting pytest-cov (from -r external/nmodl/requirements.txt (line 13)) | |
| Using cached pytest_cov-5.0.0-py3-none-any.whl.metadata (27 kB) | |
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| Using cached types_python_dateutil-2.9.0.20240316-py3-none-any.whl (9.7 kB) | |
| Installing collected packages: webencodings, wcwidth, snowballstemmer, pure-eval, ptyprocess, mpmath, mistune, find_libpython, fastjsonschema, widgetsnbextension, websocket-client, webcolors, urllib3, uri-template, typing-extensions, types-python-dateutil, traitlets, tornado, tomli, tinycss2, sympy, sphinxcontrib-serializinghtml, sphinxcontrib-qthelp, sphinxcontrib-jsmath, sphinxcontrib-htmlhelp, sphinxcontrib-devhelp, sphinxcontrib-applehelp, soupsieve, sniffio, six, send2trash, rpds-py, rfc3986-validator, pyzmq, PyYAML, python-json-logger, pygments, pycparser, psutil, prompt-toolkit, prometheus-client, pluggy, platformdirs, pexpect, pathspec, parso, pandocfilters, packaging, overrides, numpy, nest-asyncio, mdurl, MarkupSafe, jupyterlab-widgets, jupyterlab-pygments, jsonpointer, json5, iniconfig, imagesize, idna, h11, fqdn, executing, exceptiongroup, docutils, defusedxml, decorator, debugpy, coverage, charset-normalizer, certifi, babel, attrs, appnope, alabaster, terminado, setuptools-scm, scipy, scikit-build-core, rfc3339-validator, requests, referencing, qtpy, python-dateutil, pytest, matplotlib-inline, markdown-it-py, jupyter-core, Jinja2, jedi, httpcore, comm, cffi, bleach, beautifulsoup4, async-lru, asttokens, anyio, stack-data, sphinx, pytest-cov, mdit-py-plugins, jupyter-server-terminals, jupyter-client, jsonschema-specifications, httpx, arrow, argon2-cffi-bindings, sphinxcontrib-jquery, myst_parser, jsonschema, isoduration, ipython, argon2-cffi, sphinx-rtd-theme, nbformat, ipywidgets, ipykernel, qtconsole, nbclient, jupyter-events, jupyter-console, nbconvert, nbsphinx, jupyter-server, notebook-shim, jupyterlab-server, jupyter-lsp, jupyterlab, notebook, jupyter | |
| Successfully installed Jinja2-3.1.4 MarkupSafe-2.1.5 PyYAML-6.0.1 alabaster-0.7.16 anyio-4.4.0 appnope-0.1.4 argon2-cffi-23.1.0 argon2-cffi-bindings-21.2.0 arrow-1.3.0 asttokens-2.4.1 async-lru-2.0.4 attrs-23.2.0 babel-2.15.0 beautifulsoup4-4.12.3 bleach-6.1.0 certifi-2024.7.4 cffi-1.16.0 charset-normalizer-3.3.2 comm-0.2.2 coverage-7.5.4 debugpy-1.8.2 decorator-5.1.1 defusedxml-0.7.1 docutils-0.19 exceptiongroup-1.2.1 executing-2.0.1 fastjsonschema-2.20.0 find_libpython-0.4.0 fqdn-1.5.1 h11-0.14.0 httpcore-1.0.5 httpx-0.27.0 idna-3.7 imagesize-1.4.1 iniconfig-2.0.0 ipykernel-6.29.5 ipython-8.26.0 ipywidgets-8.1.3 isoduration-20.11.0 jedi-0.19.1 json5-0.9.25 jsonpointer-3.0.0 jsonschema-4.22.0 jsonschema-specifications-2023.12.1 jupyter-1.0.0 jupyter-client-8.6.2 jupyter-console-6.6.3 jupyter-core-5.7.2 jupyter-events-0.10.0 jupyter-lsp-2.2.5 jupyter-server-2.14.1 jupyter-server-terminals-0.5.3 jupyterlab-4.2.3 jupyterlab-pygments-0.3.0 jupyterlab-server-2.27.2 jupyterlab-widgets-3.0.11 markdown-it-py-2.2.0 matplotlib-inline-0.1.7 mdit-py-plugins-0.3.5 mdurl-0.1.2 mistune-2.0.5 mpmath-1.3.0 myst_parser-1.0.0 nbclient-0.10.0 nbconvert-7.16.4 nbformat-5.10.4 nbsphinx-0.9.4 nest-asyncio-1.6.0 notebook-7.2.1 notebook-shim-0.2.4 numpy-2.0.0 overrides-7.7.0 packaging-24.1 pandocfilters-1.5.1 parso-0.8.4 pathspec-0.12.1 pexpect-4.9.0 platformdirs-4.2.2 pluggy-1.5.0 prometheus-client-0.20.0 prompt-toolkit-3.0.47 psutil-6.0.0 ptyprocess-0.7.0 pure-eval-0.2.2 pycparser-2.22 pygments-2.18.0 pytest-8.1.1 pytest-cov-5.0.0 python-dateutil-2.9.0.post0 python-json-logger-2.0.7 pyzmq-26.0.3 qtconsole-5.5.2 qtpy-2.4.1 referencing-0.35.1 requests-2.32.3 rfc3339-validator-0.1.4 rfc3986-validator-0.1.1 rpds-py-0.18.1 scikit-build-core-0.9.8 scipy-1.14.0 send2trash-1.8.3 setuptools-scm-8.1.0 six-1.16.0 sniffio-1.3.1 snowballstemmer-2.2.0 soupsieve-2.5 sphinx-5.3.0 sphinx-rtd-theme-2.0.0 sphinxcontrib-applehelp-1.0.2 sphinxcontrib-devhelp-1.0.6 sphinxcontrib-htmlhelp-2.0.0 sphinxcontrib-jquery-4.1 sphinxcontrib-jsmath-1.0.1 sphinxcontrib-qthelp-1.0.7 sphinxcontrib-serializinghtml-1.1.10 stack-data-0.6.3 sympy-1.12.1 terminado-0.18.1 tinycss2-1.3.0 tomli-2.0.1 tornado-6.4.1 traitlets-5.14.3 types-python-dateutil-2.9.0.20240316 typing-extensions-4.12.2 uri-template-1.3.0 urllib3-2.2.2 wcwidth-0.2.13 webcolors-24.6.0 webencodings-0.5.1 websocket-client-1.8.0 widgetsnbextension-4.0.11 | |
| [notice] A new release of pip is available: 23.3.1 -> 24.1.1 | |
| [notice] To update, run: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/bin/python3 -m pip install --upgrade pip | |
| [32;1m$ venv/bin/pip install --upgrade pip -r nrn_requirements.txt[0;m | |
| Requirement already satisfied: pip in ./venv/lib/python3.10/site-packages (23.3.1) | |
| Collecting pip | |
| Using cached pip-24.1.1-py3-none-any.whl.metadata (3.6 kB) | |
| Collecting wheel (from -r nrn_requirements.txt (line 1)) | |
| Using cached wheel-0.43.0-py3-none-any.whl.metadata (2.2 kB) | |
| Requirement already satisfied: setuptools in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 2)) (68.2.2) | |
| Collecting setuptools (from -r nrn_requirements.txt (line 2)) | |
| Using cached setuptools-70.2.0-py3-none-any.whl.metadata (5.8 kB) | |
| Requirement already satisfied: setuptools_scm in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 3)) (8.1.0) | |
| Collecting scikit-build (from -r nrn_requirements.txt (line 4)) | |
| Using cached scikit_build-0.18.0-py3-none-any.whl.metadata (17 kB) | |
| Collecting matplotlib (from -r nrn_requirements.txt (line 5)) | |
| Using cached matplotlib-3.9.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (11 kB) | |
| Collecting bokeh<3 (from -r nrn_requirements.txt (line 7)) | |
| Using cached bokeh-2.4.3-py3-none-any.whl.metadata (14 kB) | |
| Requirement already satisfied: ipython in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 8)) (8.26.0) | |
| Collecting cython<3 (from -r nrn_requirements.txt (line 9)) | |
| Using cached Cython-0.29.37-py2.py3-none-any.whl.metadata (3.1 kB) | |
| Requirement already satisfied: packaging in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 10)) (24.1) | |
| Requirement already satisfied: pytest<=8.1.1 in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 11)) (8.1.1) | |
| Requirement already satisfied: pytest-cov in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 12)) (5.0.0) | |
| Collecting mpi4py (from -r nrn_requirements.txt (line 13)) | |
| Using cached mpi4py-3.1.6-cp310-cp310-macosx_12_0_arm64.whl | |
| Collecting numpy<2 (from -r nrn_requirements.txt (line 14)) | |
| Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl.metadata (61 kB) | |
| Requirement already satisfied: find_libpython in ./venv/lib/python3.10/site-packages (from -r nrn_requirements.txt (line 15)) (0.4.0) | |
| Requirement already satisfied: tomli>=1 in ./venv/lib/python3.10/site-packages (from setuptools_scm->-r nrn_requirements.txt (line 3)) (2.0.1) | |
| Collecting distro (from scikit-build->-r nrn_requirements.txt (line 4)) | |
| Using cached distro-1.9.0-py3-none-any.whl.metadata (6.8 kB) | |
| Collecting contourpy>=1.0.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl.metadata (5.8 kB) | |
| Collecting cycler>=0.10 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) | |
| Collecting fonttools>=4.22.0 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached fonttools-4.53.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (162 kB) | |
| Collecting kiwisolver>=1.3.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl.metadata (6.4 kB) | |
| Collecting pillow>=8 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached pillow-10.4.0-cp310-cp310-macosx_11_0_arm64.whl.metadata (9.2 kB) | |
| Collecting pyparsing>=2.3.1 (from matplotlib->-r nrn_requirements.txt (line 5)) | |
| Using cached pyparsing-3.1.2-py3-none-any.whl.metadata (5.1 kB) | |
| Requirement already satisfied: python-dateutil>=2.7 in ./venv/lib/python3.10/site-packages (from matplotlib->-r nrn_requirements.txt (line 5)) (2.9.0.post0) | |
| Requirement already satisfied: Jinja2>=2.9 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (3.1.4) | |
| Requirement already satisfied: PyYAML>=3.10 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (6.0.1) | |
| Requirement already satisfied: tornado>=5.1 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (6.4.1) | |
| Requirement already satisfied: typing-extensions>=3.10.0 in ./venv/lib/python3.10/site-packages (from bokeh<3->-r nrn_requirements.txt (line 7)) (4.12.2) | |
| Requirement already satisfied: decorator in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (5.1.1) | |
| Requirement already satisfied: jedi>=0.16 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.19.1) | |
| Requirement already satisfied: matplotlib-inline in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.1.7) | |
| Requirement already satisfied: prompt-toolkit<3.1.0,>=3.0.41 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (3.0.47) | |
| Requirement already satisfied: pygments>=2.4.0 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (2.18.0) | |
| Requirement already satisfied: stack-data in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (0.6.3) | |
| Requirement already satisfied: traitlets>=5.13.0 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (5.14.3) | |
| Requirement already satisfied: exceptiongroup in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (1.2.1) | |
| Requirement already satisfied: pexpect>4.3 in ./venv/lib/python3.10/site-packages (from ipython->-r nrn_requirements.txt (line 8)) (4.9.0) | |
| Requirement already satisfied: iniconfig in ./venv/lib/python3.10/site-packages (from pytest<=8.1.1->-r nrn_requirements.txt (line 11)) (2.0.0) | |
| Requirement already satisfied: pluggy<2.0,>=1.4 in ./venv/lib/python3.10/site-packages (from pytest<=8.1.1->-r nrn_requirements.txt (line 11)) (1.5.0) | |
| Requirement already satisfied: coverage>=5.2.1 in ./venv/lib/python3.10/site-packages (from coverage[toml]>=5.2.1->pytest-cov->-r nrn_requirements.txt (line 12)) (7.5.4) | |
| Requirement already satisfied: parso<0.9.0,>=0.8.3 in ./venv/lib/python3.10/site-packages (from jedi>=0.16->ipython->-r nrn_requirements.txt (line 8)) (0.8.4) | |
| Requirement already satisfied: MarkupSafe>=2.0 in ./venv/lib/python3.10/site-packages (from Jinja2>=2.9->bokeh<3->-r nrn_requirements.txt (line 7)) (2.1.5) | |
| Requirement already satisfied: ptyprocess>=0.5 in ./venv/lib/python3.10/site-packages (from pexpect>4.3->ipython->-r nrn_requirements.txt (line 8)) (0.7.0) | |
| Requirement already satisfied: wcwidth in ./venv/lib/python3.10/site-packages (from prompt-toolkit<3.1.0,>=3.0.41->ipython->-r nrn_requirements.txt (line 8)) (0.2.13) | |
| Requirement already satisfied: six>=1.5 in ./venv/lib/python3.10/site-packages (from python-dateutil>=2.7->matplotlib->-r nrn_requirements.txt (line 5)) (1.16.0) | |
| Requirement already satisfied: executing>=1.2.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (2.0.1) | |
| Requirement already satisfied: asttokens>=2.1.0 in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (2.4.1) | |
| Requirement already satisfied: pure-eval in ./venv/lib/python3.10/site-packages (from stack-data->ipython->-r nrn_requirements.txt (line 8)) (0.2.2) | |
| Using cached pip-24.1.1-py3-none-any.whl (1.8 MB) | |
| Using cached wheel-0.43.0-py3-none-any.whl (65 kB) | |
| Using cached setuptools-70.2.0-py3-none-any.whl (930 kB) | |
| Using cached scikit_build-0.18.0-py3-none-any.whl (85 kB) | |
| Using cached matplotlib-3.9.1-cp310-cp310-macosx_11_0_arm64.whl (7.8 MB) | |
| Using cached bokeh-2.4.3-py3-none-any.whl (18.5 MB) | |
| Using cached Cython-0.29.37-py2.py3-none-any.whl (989 kB) | |
| Using cached numpy-1.26.4-cp310-cp310-macosx_11_0_arm64.whl (14.0 MB) | |
| Using cached contourpy-1.2.1-cp310-cp310-macosx_11_0_arm64.whl (244 kB) | |
| Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB) | |
| Using cached fonttools-4.53.0-cp310-cp310-macosx_11_0_arm64.whl (2.2 MB) | |
| Using cached kiwisolver-1.4.5-cp310-cp310-macosx_11_0_arm64.whl (66 kB) | |
| Using cached pillow-10.4.0-cp310-cp310-macosx_11_0_arm64.whl (3.4 MB) | |
| Using cached pyparsing-3.1.2-py3-none-any.whl (103 kB) | |
| Using cached distro-1.9.0-py3-none-any.whl (20 kB) | |
| Installing collected packages: wheel, setuptools, pyparsing, pip, pillow, numpy, mpi4py, kiwisolver, fonttools, distro, cython, cycler, scikit-build, contourpy, bokeh, matplotlib | |
| Attempting uninstall: setuptools | |
| Found existing installation: setuptools 68.2.2 | |
| Uninstalling setuptools-68.2.2: | |
| Successfully uninstalled setuptools-68.2.2 | |
| Attempting uninstall: pip | |
| Found existing installation: pip 23.3.1 | |
| Uninstalling pip-23.3.1: | |
| Successfully uninstalled pip-23.3.1 | |
| Attempting uninstall: numpy | |
| Found existing installation: numpy 2.0.0 | |
| Uninstalling numpy-2.0.0: | |
| Successfully uninstalled numpy-2.0.0 | |
| Successfully installed bokeh-2.4.3 contourpy-1.2.1 cycler-0.12.1 cython-0.29.37 distro-1.9.0 fonttools-4.53.0 kiwisolver-1.4.5 matplotlib-3.9.1 mpi4py-3.1.6 numpy-1.26.4 pillow-10.4.0 pip-24.1.1 pyparsing-3.1.2 scikit-build-0.18.0 setuptools-70.2.0 wheel-0.43.0 | |
| [32;1m$ source ./venv/bin/activate[0;m | |
| [32;1m$ export PYTHON=${PWD}/venv/bin/python[0;m | |
| [32;1m$ ${PYTHON} --version[0;m | |
| Python 3.10.13 | |
| [32;1m$ ${PYTHON} -c "import os,matplotlib; f = open(os.path.join(os.path.dirname(matplotlib.__file__), \"mpl-data/matplotlibrc\"),\"a\"); f.write(\"backend: TkAgg\");f.close();"[0;m | |
| [32;1m$ export CXX=${CXX:-g++}[0;m | |
| [32;1m$ export CC=${CC:-gcc}[0;m | |
| [32;1m$ brew install flex bison[0;m | |
| Warning: flex 2.6.4_2 is already installed and up-to-date. | |
| To reinstall 2.6.4_2, run: | |
| brew reinstall flex | |
| Warning: bison 3.8.2 is already installed and up-to-date. | |
| To reinstall 3.8.2, run: | |
| brew reinstall bison | |
| [32;1m$ export PATH="/opt/homebrew/opt/flex/bin:/opt/homebrew/opt/bison/bin:$PATH"[0;m | |
| [32;1m$ export INSTALL_DIR=$(pwd)/install[0;m | |
| [32;1m$ echo $LANG[0;m | |
| [32;1m$ echo $LC_ALL[0;m | |
| [32;1m$ export PYTHONPATH=$(${PYTHON} -c "import site; print(\":\".join(site.getsitepackages()))")[0;m | |
| [32;1m$ ${PYTHON} -c 'import os,sys; os.set_blocking(sys.stdout.fileno(), True)'[0;m | |
| [32;1m$ cmake_args=(-G Ninja)[0;m | |
| [32;1m$ if [[ -n "${sanitizer}" ]]; then[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS="-O1 -g" -DCMAKE_CXX_FLAGS="-O1 -g" -DNRN_SANITIZERS=$(echo ${sanitizer} | sed -e 's/-/,/g'))[0;m | |
| [32;1m$ fi[0;m | |
| [32;1m$ cmake_args+=(-DCMAKE_C_COMPILER="${CC}" -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER="${CXX}" -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX="${INSTALL_DIR}" -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=${cmake_coreneuron} -DNRN_ENABLE_INTERVIEWS=${cmake_interviews} -DNRN_ENABLE_RX3D=${cmake_rx3d})[0;m | |
| [32;1m$ cmake_args+=(-DPYTHON_EXECUTABLE="${PYTHON}")[0;m | |
| [32;1m$ mkdir build && cd build[0;m | |
| [32;1m$ echo "Building with ${cmake_args[@]}"[0;m | |
| Building with -G Ninja -DCMAKE_BUILD_TYPE=Custom -DCMAKE_C_FLAGS=-O1 -g -DCMAKE_CXX_FLAGS=-O1 -g -DNRN_SANITIZERS=address -DCMAKE_C_COMPILER=gcc -DCMAKE_C_COMPILER_LAUNCHER=ccache -DCMAKE_CXX_COMPILER=g++ -DCMAKE_CXX_COMPILER_LAUNCHER=ccache -DCMAKE_INSTALL_PREFIX=/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install -DNRN_ENABLE_TESTS=ON -DNRN_ENABLE_PERFORMANCE_TESTS=OFF -DNRN_ENABLE_CORENEURON=ON -DNRN_ENABLE_INTERVIEWS=OFF -DNRN_ENABLE_RX3D=OFF -DPYTHON_EXECUTABLE=/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/bin/python | |
| [32;1m$ cmake .. "${cmake_args[@]}"[0;m | |
| -- The C compiler identification is AppleClang 14.0.0.14000029 | |
| -- The CXX compiler identification is AppleClang 14.0.0.14000029 | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working C compiler: /usr/bin/gcc - skipped | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Check for working CXX compiler: /usr/bin/g++ - skipped | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check | |
| -- Sub-module : missing external/coding-conventions : running git submodule update --init | |
| Submodule 'external/coding-conventions' (https://github.com/BlueBrain/hpc-coding-conventions.git) registered for path 'external/coding-conventions' | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/coding-conventions'... | |
| Submodule path 'external/coding-conventions': checked out '3d157f9c8ea94d196a825aaa7f523265e360dc4b' | |
| -- Fetching git submodule external/Random123: running git submodule update --init;--recursive;--depth;1 -- external/Random123 | |
| Submodule 'external/Random123' (https://github.com/BlueBrain/Random123.git) registered for path 'external/Random123' | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/Random123'... | |
| From https://github.com/BlueBrain/Random123 | |
| * branch b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1 -> FETCH_HEAD | |
| Submodule path 'external/Random123': checked out 'b5cb15614e8f3eb0ff316bdc50c300ddd32fa3c1' | |
| -- 3rd party project: using Random123 from "external/Random123" | |
| -- Fetching git submodule external/eigen: running git submodule update --init;--recursive;--depth;1 -- external/eigen | |
| Submodule 'external/eigen' (https://gitlab.com/libeigen/eigen.git) registered for path 'external/eigen' | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/eigen'... | |
| From https://gitlab.com/libeigen/eigen | |
| * branch 3147391d946bb4b6c68edd901f2add6ac1f31f8c -> FETCH_HEAD | |
| Submodule path 'external/eigen': checked out '3147391d946bb4b6c68edd901f2add6ac1f31f8c' | |
| -- 3rd party project: using eigen from "external/eigen" | |
| -- Enabling sanitizers: address | |
| -- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
| -- Checking if /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/bin/python is a working python | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2") | |
| -- Found FLEX: /opt/homebrew/opt/flex/bin/flex (found suitable version "2.6.4", minimum required is "2.6") | |
| -- Found Readline: /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include | |
| -- Found MPI_C: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI_CXX: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib (found version "3.1") | |
| -- Found MPI: TRUE (found version "3.1") | |
| -- Sub-module : missing /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nanobind : running git submodule update --recursive;--depth;1 --init | |
| Submodule 'external/nanobind' (https://github.com/wjakob/nanobind) registered for path 'external/nanobind' | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nanobind'... | |
| From https://github.com/wjakob/nanobind | |
| * branch 8d7f1ee0621c17fa370b704b2100ffa0243d5bfb -> FETCH_HEAD | |
| Submodule path 'external/nanobind': checked out '8d7f1ee0621c17fa370b704b2100ffa0243d5bfb' | |
| Submodule 'ext/robin_map' (https://github.com/Tessil/robin-map) registered for path 'external/nanobind/ext/robin_map' | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nanobind/ext/robin_map'... | |
| From https://github.com/Tessil/robin-map | |
| * branch 188c45569cc2a5dd768077c193830b51d33a5020 -> FETCH_HEAD | |
| Submodule path 'external/nanobind/ext/robin_map': checked out '188c45569cc2a5dd768077c193830b51d33a5020' | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success | |
| -- Found Threads: TRUE | |
| -- Fetching git submodule external/CLI11: running git submodule update --init;--recursive;--depth;1 -- external/CLI11 | |
| Submodule 'external/CLI11' (https://github.com/CLIUtils/CLI11.git) registered for path 'external/CLI11' | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/CLI11'... | |
| From https://github.com/CLIUtils/CLI11 | |
| * branch 291c58789c031208f08f4f261a858b5b7083e8e2 -> FETCH_HEAD | |
| Submodule path 'external/CLI11': checked out '291c58789c031208f08f4f261a858b5b7083e8e2' | |
| -- 3rd party project: using CLI11 from "external/CLI11" | |
| CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required): | |
| Compatibility with CMake < 3.5 will be removed from a future version of | |
| CMake. | |
| Update the VERSION argument <min> value or use a ...<max> suffix to tell | |
| CMake that the project does not need compatibility with older versions. | |
| -- Building CoreNEURON | |
| -- Found Git: /usr/bin/git (found version "2.37.0 (Apple Git-136)") | |
| -- Found Perl: /usr/bin/perl (found version "5.30.3") | |
| -- Could NOT find nmodl (missing: nmodl_BINARY) | |
| -- Sub-project : using nmodl from from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl | |
| -- CHECKING FOR FLEX/BISON | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0") | |
| -- Adding Flex include path as : /opt/homebrew/opt/flex/include/ | |
| -- NMODL_TEST_FORMATTING: OFF | |
| -- NMODL_GIT_HOOKS: OFF | |
| -- NMODL_GIT_COMMIT_HOOKS: | |
| -- NMODL_GIT_PUSH_HOOKS: courtesy-msg | |
| -- NMODL_STATIC_ANALYSIS: OFF | |
| -- NMODL_TEST_STATIC_ANALYSIS: OFF | |
| -- 3rd party project: using fmt from "ext/fmt" | |
| -- Version: 10.2.1 | |
| -- Build type: Custom | |
| -- 3rd party project: using json from "ext/json" | |
| -- Using the multi-header code from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/ext/json/include/ | |
| -- 3rd party project: using pybind11 from "ext/pybind11" | |
| -- pybind11 v2.12.0 | |
| -- Found PythonInterp: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/bin/python (found suitable version "3.10.13", minimum required is "3.6") | |
| -- Found PythonLibs: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- 3rd party project: using spdlog from "ext/spdlog" | |
| -- Build spdlog: 1.13.0 | |
| -- Build type: Custom | |
| -- CHECKING FOR PYTHON | |
| -- Found Python: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/bin/python3.10 (found suitable version "3.10.13", minimum required is "3.8") found components: Interpreter | |
| -- | |
| -- Configured NMODL 0.0 (2ad008f 2024-07-03 11:35:03 +0200) | |
| -- | |
| -- You can now build NMODL using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------------+-------------------------------------------------------- | |
| -- test | Run unit tests | |
| -- install | Will install NMODL to: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd | |
| -- Build Type | Custom | |
| -- Python Bindings | OFF | |
| -- Flex | /opt/homebrew/opt/flex/bin/flex | |
| -- Bison | /opt/homebrew/opt/bison/bin/bison | |
| -- Python | /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/bin/python | |
| -- Linked against | ON | |
| -- --------------------+-------------------------------------------------------- | |
| -- See documentation : https://github.com/BlueBrain/nmodl/ | |
| -- --------------------+-------------------------------------------------------- | |
| -- | |
| -- | |
| -- CoreNEURON is enabled with following build configuration: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope | |
| -- Build Type | SHARED | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include | |
| -- OpenMP | ON | |
| -- NMODL PATH | /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/bin/nmodl | |
| -- NMODL FLAGS | | |
| -- GPU Support | OFF | |
| -- Auto Timeout | ON | |
| -- Wrap exp() | OFF | |
| -- SplayTree Queue | ON | |
| -- NetReceive Buffer | ON | |
| -- Caliper | OFF | |
| -- Likwid | OFF | |
| -- Unit Tests | ON | |
| -- Reporting | OFF | |
| -- --------------------+-------------------------------------------------------- | |
| -- | |
| Extracting link flags from target 'nrngnu', beware that this can be fragile. Got: | |
| Extracting link flags from target 'sparse13', beware that this can be fragile. Got: | |
| For 'nrnpython' going to see TARGET 'nanobind' recursively. | |
| Extracting link flags from target 'nanobind', beware that this can be fragile. Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;nanobind | |
| Extracting link flags from target 'nrnpython', beware that this can be fragile. Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;nanobind | |
| Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;nanobind | |
| Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
| -- Sub-module : missing /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/catch2 : running git submodule update --init | |
| Submodule 'external/catch2' (https://github.com/catchorg/Catch2.git) registered for path 'external/catch2' | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/catch2'... | |
| Submodule path 'external/catch2': checked out '8ac8190e494a381072c89f5e161b92a08d98b37b' | |
| -- Found Python module 'pytest' with version(s): 8.1.1 | |
| -- Found Python module 'pytest_cov' with version(s): 5.0.0 | |
| -- Fetching git submodule test/rxd/testdata: running git submodule update --init;--recursive;--depth;1 -- test/rxd/testdata | |
| Submodule 'test/rxd/testdata' (https://github.com/neuronsimulator/rxdtestdata) registered for path 'test/rxd/testdata' | |
| Cloning into '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/test/rxd/testdata'... | |
| From https://github.com/neuronsimulator/rxdtestdata | |
| * branch 30c76babbbc2cff005fd3f6f649c8b81da41ee58 -> FETCH_HEAD | |
| Submodule path 'test/rxd/testdata': checked out '30c76babbbc2cff005fd3f6f649c8b81da41ee58' | |
| -- 3rd party project: using rxd/testdata from "test/rxd/testdata" | |
| -- Found Python module 'mpi4py' with version(s): 3.1.6 | |
| -- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_nmodlrandom_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_nmodlrandom_syntax_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_file_mode_py_gpu: gpu not enabled | |
| -- Found Python module 'mpi4py' with version(s): 3.1.6 | |
| -- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled | |
| -- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled | |
| -- Found OpenSSL: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib (found version "3.2.0") | |
| -- | |
| -- Configured NEURON 9.0.0 | |
| -- | |
| -- You can now build NEURON using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------+-------------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------+-------------------------------------------------------------- | |
| -- install | Will install NEURON to: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install | |
| -- | Change the install location of NEURON using: | |
| -- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path> | |
| -- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean | |
| -- uninstall | Removes files installed by make install (todo) | |
| -- --------------+-------------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------+-------------------------------------------------------------- | |
| -- C COMPILER | /usr/bin/gcc | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug) | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd | |
| -- Shared | ON | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include | |
| -- LIB | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib | |
| -- Python | ON | |
| -- DYNAMIC | OFF | |
| -- MODULE | ON | |
| -- python3.10 (default) | |
| -- EXE | /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/bin/python | |
| -- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 | |
| -- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd | |
| -- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd | |
| -- RX3D | OFF | |
| -- Interviews | OFF | |
| -- CoreNEURON | ON | |
| -- PATH | /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/coreneuron | |
| -- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib | |
| -- Tests | ON | |
| -- --------------+-------------------------------------------------------------- | |
| -- See documentation : https://www.neuron.yale.edu/neuron/ | |
| -- --------------+-------------------------------------------------------------- | |
| -- | |
| -- Configuring done (28.5s) | |
| -- Generating done (0.4s) | |
| -- Build files have been written to: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build | |
| [32;1m$ ccache -z[0;m | |
| Statistics zeroed | |
| [32;1m$ ccache -vs 2>/dev/null[0;m | |
| Cache directory: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/ccache | |
| Config file: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/ccache/ccache.conf | |
| System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf | |
| Stats updated: Thu Jul 4 14:22:52 2024 | |
| Local storage: | |
| Cache size (GiB): 1.0 / 5.0 (19.69%) | |
| Files: 10674 | |
| Hits: 0 | |
| Misses: 0 | |
| Reads: 0 | |
| Writes: 0 | |
| [32;1m$ cmake --build . --parallel[0;m | |
| [0/2] Re-checking globbed directories... | |
| [1/1930] Generating share/nrn/demo/demo.ses | |
| [2/1930] Generating share/nrn/demo/cycle.hoc | |
| [3/1930] Generating share/nrn/demo/demo.hoc | |
| [4/1930] Generating share/nrn/demo/dend3.ses | |
| [5/1930] Generating share/nrn/demo/dend3/syn3.hoc | |
| [6/1930] Generating share/nrn/demo/d3init.hoc | |
| [7/1930] Generating share/nrn/demo/dend3/dend3.nrn | |
| [8/1930] Generating share/nrn/demo/dend3/control.hoc | |
| [9/1930] Update hh.mod for CoreNEURON compatibility | |
| [10/1930] Generating share/nrn/demo/dynclamp.ses | |
| [11/1930] Generating share/nrn/demo/hh.hoc | |
| [12/1930] Generating share/nrn/demo/nomodel.hoc | |
| [13/1930] Generating share/nrn/demo/hh.ses | |
| [14/1930] Generating share/nrn/demo/dynclamp.hoc | |
| [15/1930] Generating share/nrn/demo/dynchan.ses | |
| [16/1930] Generating share/nrn/demo/pyramid.nrn | |
| [17/1930] Generating share/nrn/demo/release/cachan1.mod | |
| [18/1930] Generating share/nrn/demo/pyramid.ses | |
| [19/1930] Generating share/nrn/demo/release.hoc | |
| [20/1930] Generating share/nrn/demo/reconst.hoc | |
| [21/1930] Generating share/nrn/demo/release.ses | |
| [22/1930] Generating share/nrn/demo/release/camchan.mod | |
| [23/1930] Generating share/nrn/demo/release/cabpump.mod | |
| [24/1930] Generating share/nrn/demo/release/capump.mod | |
| [25/1930] Generating share/nrn/demo/release/invlfire.mod | |
| [26/1930] Generating share/nrn/demo/release/release.mod | |
| [27/1930] Generating share/nrn/demo/release/khhchan.mod | |
| [28/1930] Generating share/nrn/demo/singhhchan.hoc | |
| [29/1930] Generating share/nrn/demo/release/nacaex.mod | |
| [30/1930] Generating share/nrn/demo/release/nachan.mod | |
| [31/1930] Generating share/nrn/demo/singhh.ses | |
| [32/1930] Generating share/nrn/demo/singhh.hoc | |
| [33/1930] Generating share/nrn/demo/sync/demosync.hoc | |
| [34/1930] Generating share/nrn/demo/sync/init.hoc | |
| [35/1930] Generating share/nrn/demo/sync/spkplot.hoc | |
| [36/1930] Generating share/nrn/demo/sync/cell.hoc | |
| [37/1930] Generating share/nrn/demo/testca.hoc | |
| [38/1930] Generating share/nrn/demo/sync/start.ses | |
| [39/1930] Generating share/nrn/demo/sync/synchronize.hoc | |
| [40/1930] Generating share/nrn/lib/auditscripts/gettarname | |
| [41/1930] Generating share/nrn/lib/auditscripts/notes | |
| [42/1930] Generating share/nrn/lib/auditscripts/retrieve.sh | |
| [43/1930] Generating share/nrn/lib/cleanup | |
| [44/1930] Generating share/nrn/lib/auditscripts/hocaudit.sh | |
| [45/1930] Generating share/nrn/lib/auditscripts/saveaudit | |
| [46/1930] Generating share/nrn/lib/hoc/attshape.hoc | |
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| ../../../../../external/nmodl/src/parser/verbatim.yy:29.1-24: warning: deprecated directive: '%name-prefix "Verbatim_"', use '%define api.prefix {Verbatim_}' [-Wdeprecated] | |
| 29 | %name-prefix "Verbatim_" | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.prefix {Verbatim_} | |
| ../../../../../external/nmodl/src/parser/verbatim.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
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| ../../../../../external/nmodl/src/parser/diffeq.yy:56.1-40: warning: deprecated directive: '%define parser_class_name {DiffeqParser}', use '%define api.parser.class {DiffeqParser}' [-Wdeprecated] | |
| 56 | %define parser_class_name {DiffeqParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.parser.class {DiffeqParser} | |
| ../../../../../external/nmodl/src/parser/diffeq.yy: warning: 2 shift/reduce conflicts [-Wconflicts-sr] | |
| ../../../../../external/nmodl/src/parser/diffeq.yy: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
| ../../../../../external/nmodl/src/parser/diffeq.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
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| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.cpp:8: | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.hpp:17: | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/ext/fmt/include/fmt/format.h:41: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/memory:682: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/shared_ptr.h:25: | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:57:5: warning: delete called on 'nmodl::utils::Blame' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor] | |
| delete __ptr; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:318:7: note: in instantiation of member function 'std::default_delete<nmodl::utils::Blame>::operator()' requested here | |
| __ptr_.second()(__tmp); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:272:19: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::reset' requested here | |
| ~unique_ptr() { reset(); } | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.hpp:55:5: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::~unique_ptr' requested here | |
| CodePrinter(std::unique_ptr<utils::Blame> blame) | |
| ^ | |
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| 49 | %define parser_class_name {UnitParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.parser.class {UnitParser} | |
| ../../../../../external/nmodl/src/parser/unit.yy: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] | |
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| ../../../../../external/nmodl/src/parser/c11.yy:52.1-35: warning: deprecated directive: '%define parser_class_name {CParser}', use '%define api.parser.class {CParser}' [-Wdeprecated] | |
| 52 | %define parser_class_name {CParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
| | %define api.parser.class {CParser} | |
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| 64 | %define parser_class_name {NmodlParser} | |
| | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | |
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| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
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| ../src/nmodl/diffeq.ypp: warning: 5 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/nmodl/diffeq.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
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| ../src/oc/parse.ypp: warning: 108 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/oc/parse.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
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| ../src/nmodl/parse1.ypp: warning: 3 shift/reduce conflicts [-Wconflicts-sr] | |
| ../src/nmodl/parse1.ypp: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples | |
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| [562/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/init.cpp.o | |
| [563/1930] Linking CXX static library lib/libcoreneuron-core.a | |
| [564/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/list.cpp.o | |
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| [568/1930] Linking CXX static library lib/libutil.a | |
| [569/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/noccout.cpp.o | |
| [570/1930] -- NMODL : GENERATING NMODL LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/nmodl.ll:503: warning, -s option given but default rule can be matched | |
| [571/1930] -- NMODL : GENERATING VERBATIM LEXER WITH FLEX! -- | |
| [572/1930] -- NMODL : GENERATING DIFFERENTIAL EQUATION LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/diffeq.ll:100: warning, -s option given but default rule can be matched | |
| [573/1930] -- NMODL : GENERATING C(11) LEXER WITH FLEX! -- | |
| [574/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/netrec_discon.cpp.o | |
| [575/1930] -- NMODL : GENERATING UNIT LEXER WITH FLEX! -- | |
| ../../../../../external/nmodl/src/lexer/unit.ll:171: warning, -s option given but default rule can be matched | |
| [576/1930] Linking CXX static library lib/libpyembed.a | |
| [577/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/simultan.cpp.o | |
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| [579/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/parsact.cpp.o | |
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| [583/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_transform_visitor.cpp.o | |
| [584/1930] Building CXX object src/nrnpython/CMakeFiles/nanobind.dir/__/__/external/nanobind/src/nb_combined.cpp.o | |
| [585/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_acc_visitor.cpp.o | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/codegen/codegen_acc_visitor.cpp:8: | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/codegen/codegen_acc_visitor.hpp:15: | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/codegen/codegen_coreneuron_cpp_visitor.hpp:18: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/algorithm:653: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/functional:500: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__functional/function.h:20: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/shared_ptr.h:25: | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:57:5: warning: delete called on 'nmodl::utils::Blame' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor] | |
| delete __ptr; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:318:7: note: in instantiation of member function 'std::default_delete<nmodl::utils::Blame>::operator()' requested here | |
| __ptr_.second()(__tmp); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:272:19: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::reset' requested here | |
| ~unique_ptr() { reset(); } | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.hpp:55:5: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::~unique_ptr' requested here | |
| CodePrinter(std::unique_ptr<utils::Blame> blame) | |
| ^ | |
| 1 warning generated. | |
| [586/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_info.cpp.o | |
| [587/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_compatibility_visitor.cpp.o | |
| [588/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_utils.cpp.o | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/codegen/codegen_utils.cpp:8: | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/codegen/codegen_utils.hpp:16: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/string:522: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/algorithm:653: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/functional:500: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__functional/function.h:20: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/shared_ptr.h:25: | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:57:5: warning: delete called on 'nmodl::utils::Blame' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor] | |
| delete __ptr; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:318:7: note: in instantiation of member function 'std::default_delete<nmodl::utils::Blame>::operator()' requested here | |
| __ptr_.second()(__tmp); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:272:19: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::reset' requested here | |
| ~unique_ptr() { reset(); } | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.hpp:55:5: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::~unique_ptr' requested here | |
| CodePrinter(std::unique_ptr<utils::Blame> blame) | |
| ^ | |
| 1 warning generated. | |
| [589/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/modtoken.cpp.o | |
| [590/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_helper_visitor.cpp.o | |
| [591/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/token_mapping.cpp.o | |
| [592/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/nmodl_utils.cpp.o | |
| [593/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/verbatim_lexer.cpp.o | |
| [594/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/diffeq_base_lexer.cpp.o | |
| [595/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/modl.cpp.o | |
| [596/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/c11_base_lexer.cpp.o | |
| [597/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/unit_base_lexer.cpp.o | |
| [598/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_driver.cpp.o | |
| [599/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq_context.cpp.o | |
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| [601/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/verbatim_parser.cpp.o | |
| [602/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/c11_driver.cpp.o | |
| [603/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/unit_driver.cpp.o | |
| [604/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/diffeq/diffeq_parser.cpp.o | |
| [605/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_neuron_cpp_visitor.cpp.o | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/codegen/codegen_neuron_cpp_visitor.cpp:8: | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/codegen/codegen_neuron_cpp_visitor.hpp:18: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/algorithm:653: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/functional:500: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__functional/function.h:20: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/shared_ptr.h:25: | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:57:5: warning: delete called on 'nmodl::utils::Blame' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor] | |
| delete __ptr; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:318:7: note: in instantiation of member function 'std::default_delete<nmodl::utils::Blame>::operator()' requested here | |
| __ptr_.second()(__tmp); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:272:19: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::reset' requested here | |
| ~unique_ptr() { reset(); } | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.hpp:55:5: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::~unique_ptr' requested here | |
| CodePrinter(std::unique_ptr<utils::Blame> blame) | |
| ^ | |
| 1 warning generated. | |
| [606/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/c/c11_parser.cpp.o | |
| [607/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/nmodl_driver.cpp.o | |
| [608/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/unit/unit_parser.cpp.o | |
| [609/1930] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol_properties.cpp.o | |
| [610/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_coreneuron_cpp_visitor.cpp.o | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/codegen/codegen_coreneuron_cpp_visitor.cpp:8: | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/codegen/codegen_coreneuron_cpp_visitor.hpp:18: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/algorithm:653: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/functional:500: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__functional/function.h:20: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/shared_ptr.h:25: | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:57:5: warning: delete called on 'nmodl::utils::Blame' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor] | |
| delete __ptr; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:318:7: note: in instantiation of member function 'std::default_delete<nmodl::utils::Blame>::operator()' requested here | |
| __ptr_.second()(__tmp); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:272:19: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::reset' requested here | |
| ~unique_ptr() { reset(); } | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.hpp:55:5: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::~unique_ptr' requested here | |
| CodePrinter(std::unique_ptr<utils::Blame> blame) | |
| ^ | |
| 1 warning generated. | |
| [611/1930] Building CXX object external/nmodl/src/symtab/CMakeFiles/symtab.dir/symbol.cpp.o | |
| [612/1930] Building CXX object external/nmodl/src/codegen/CMakeFiles/codegen.dir/codegen_cpp_visitor.cpp.o | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/codegen/codegen_cpp_visitor.cpp:7: | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/codegen/codegen_cpp_visitor.hpp:18: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/algorithm:653: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/functional:500: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__functional/function.h:20: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/shared_ptr.h:25: | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:57:5: warning: delete called on 'nmodl::utils::Blame' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor] | |
| delete __ptr; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:318:7: note: in instantiation of member function 'std::default_delete<nmodl::utils::Blame>::operator()' requested here | |
| __ptr_.second()(__tmp); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:272:19: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::reset' requested here | |
| ~unique_ptr() { reset(); } | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.hpp:55:5: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::~unique_ptr' requested here | |
| CodePrinter(std::unique_ptr<utils::Blame> blame) | |
| ^ | |
| 1 warning generated. | |
| [613/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/units/units.cpp.o | |
| [614/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/function_callpath_visitor.cpp.o | |
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| [623/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/index_remover.cpp.o | |
| [624/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/parser/nmodl/nmodl_parser.cpp.o | |
| [625/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/local_var_rename_visitor.cpp.o | |
| [626/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/loop_unroll_visitor.cpp.o | |
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| [632/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/kinetic_block_visitor.cpp.o | |
| [633/1930] Building CXX object external/nmodl/src/CMakeFiles/nmodl.dir/main.cpp.o | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/main.cpp:8: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/string:522: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/algorithm:653: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/functional:500: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__functional/function.h:20: | |
| In file included from /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/shared_ptr.h:25: | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:57:5: warning: delete called on 'nmodl::utils::Blame' that is abstract but has non-virtual destructor [-Wdelete-abstract-non-virtual-dtor] | |
| delete __ptr; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:318:7: note: in instantiation of member function 'std::default_delete<nmodl::utils::Blame>::operator()' requested here | |
| __ptr_.second()(__tmp); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__memory/unique_ptr.h:272:19: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::reset' requested here | |
| ~unique_ptr() { reset(); } | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/src/printer/code_printer.hpp:55:5: note: in instantiation of member function 'std::unique_ptr<nmodl::utils::Blame>::~unique_ptr' requested here | |
| CodePrinter(std::unique_ptr<utils::Blame> blame) | |
| ^ | |
| 1 warning generated. | |
| [634/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/rename_visitor.cpp.o | |
| [635/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/solve_block_visitor.cpp.o | |
| [636/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/var_usage_visitor.cpp.o | |
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| [638/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/units_visitor.cpp.o | |
| [639/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/steadystate_visitor.cpp.o | |
| [640/1930] Building CXX object external/nmodl/src/lexer/CMakeFiles/lexer.dir/__/ast/ast.cpp.o | |
| [641/1930] Linking CXX static library lib/liblexer.a | |
| [642/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/ast_visitor.cpp.o | |
| [643/1930] Linking CXX static library lib/libsymtab.a | |
| [644/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/verbatim_var_rename_visitor.cpp.o | |
| [645/1930] Linking CXX static library lib/libpywrapper.a | |
| [646/1930] Linking CXX static library lib/libnanobind.a | |
| [647/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_conductance_visitor.cpp.o | |
| [648/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/nmodl/version.cpp.o | |
| [649/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/__/modlunit/units.cpp.o | |
| [650/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/lex.cpp.o | |
| [651/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/parse1.cpp.o | |
| [652/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_replace_solutions_visitor.cpp.o | |
| [653/1930] Generating ../oc/hocusr.h | |
| [654/1930] Generating ../../share/nrn/nrnmain.cpp | |
| [655/1930] Generating ../../include/nrnmpiuse.h | |
| [656/1930] Generating ../../include/nrncvode/nrnneosm.h | |
| [657/1930] Generating ../../include/nrnconf.h | |
| [658/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/catch_chronometer.cpp.o | |
| [659/1930] Building CXX object src/nrniv/CMakeFiles/nocmodl.dir/nocmodl_generated/diffeq.cpp.o | |
| [660/1930] Linking CXX executable bin/nocmodl | |
| [661/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/checkparent_visitor.cpp.o | |
| [662/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_benchmark_function.cpp.o | |
| [663/1930] cd /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h | |
| fatal: No names found, cannot describe anything. | |
| [664/1930] cd /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/src/nrniv && true | |
| [665/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/lookup_visitor.cpp.o | |
| [666/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_analyse.cpp.o | |
| [667/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/json_visitor.cpp.o | |
| [668/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_run_for_at_least.cpp.o | |
| [669/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/benchmark/detail/catch_stats.cpp.o | |
| [670/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/nmodl_visitor.cpp.o | |
| [671/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/visitor_utils.cpp.o | |
| [672/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpython.cpp.o | |
| [673/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/sympy_solver_visitor.cpp.o | |
| [674/1930] Building CXX object external/nmodl/src/visitors/CMakeFiles/visitor.dir/symtab_visitor.cpp.o | |
| [675/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_marching_cubes.cpp.o | |
| [676/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_llgramarea.cpp.o | |
| [677/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generator_exception.cpp.o | |
| [678/1930] Linking CXX static library lib/libvisitor.a | |
| [679/1930] Linking CXX static library lib/libcodegen.a | |
| [680/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_p2h.cpp.o | |
| [681/1930] Linking CXX executable bin/nmodl | |
| [682/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/grids.cpp.o | |
| [683/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generators.cpp.o | |
| [684/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_intracellular.cpp.o | |
| [685/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/generators/catch_generators_random.cpp.o | |
| [686/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_automake.cpp.o | |
| [687/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_common_base.cpp.o | |
| [688/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_compact.cpp.o | |
| [689/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_vol.cpp.o | |
| [690/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd_extracellular.cpp.o | |
| [691/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_hoc.cpp.o | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:9: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, _object *), _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:169:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, _object *), Args = <_object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(nrnexec, self, args); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:9: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(PyHocObject *&, _object *&))(PyHocObject *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(PyHocObject *, _object *), PyHocObject *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_hoc.cpp:2458:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(PyHocObject *, _object *), Args = <PyHocObject *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(hocobj_same, pself, args); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(PyHocObject *&, _object *&))(PyHocObject *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| 2 warnings generated. | |
| [692/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_event_listener.cpp.o | |
| [693/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_console.cpp.o | |
| [694/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/nrnpy_nrn.cpp.o | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(_object *&, _object *&))(_object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(_object *, _object *), _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:203:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(_object *, _object *), Args = <_object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPySecObj_contains, sec, obj); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(_object *&, _object *&))(_object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPySecObj *&, _object *&, _object *&))(NPySecObj *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPySecObj *, _object *, _object *), NPySecObj *&, _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:427:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPySecObj *, _object *, _object *), Args = <NPySecObj *&, _object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPySecObj_init, self, args, kwds); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPySecObj *&, _object *&, _object *&))(NPySecObj *, _object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPyAllSegOfSecIter *&, _object *&, _object *&))(NPyAllSegOfSecIter *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPyAllSegOfSecIter *, _object *, _object *), NPyAllSegOfSecIter *&, _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:445:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPyAllSegOfSecIter *, _object *, _object *), Args = <NPyAllSegOfSecIter *&, _object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPyAllSegOfSecIter_init, self, args, kwds); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPyAllSegOfSecIter *&, _object *&, _object *&))(NPyAllSegOfSecIter *, _object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_typeobject *&, _object *&, _object *&))(_typeobject *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_typeobject *, _object *, _object *), _typeobject *&, _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:462:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_typeobject *, _object *, _object *), Args = <_typeobject *&, _object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPySecObj_new, type, args, kwds); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_typeobject *&, _object *&, _object *&))(_typeobject *, _object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, _object *&, _object *&))(_object *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, _object *, _object *), _object *&, _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:487:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, _object *, _object *), Args = <_object *&, _object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(nrnpy_newsecobj, self, args, kwds); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, _object *&, _object *&))(_object *, _object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPySegObj *&, _object *&, _object *&))(NPySegObj *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPySegObj *, _object *, _object *), NPySegObj *&, _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:588:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPySegObj *, _object *, _object *), Args = <NPySegObj *&, _object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPySegObj_init, self, args, kwds); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPySegObj *&, _object *&, _object *&))(NPySegObj *, _object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPyMechObj *&, _object *&, _object *&))(NPyMechObj *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPyMechObj *, _object *, _object *), NPyMechObj *&, _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:691:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPyMechObj *, _object *, _object *), Args = <NPyMechObj *&, _object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPyMechObj_init, self, args, kwds); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPyMechObj *&, _object *&, _object *&))(NPyMechObj *, _object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(NPyRangeVar *&, _object *&, _object *&))(NPyRangeVar *, _object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(NPyRangeVar *, _object *, _object *), NPyRangeVar *&, _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:699:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(NPyRangeVar *, _object *, _object *), Args = <NPyRangeVar *&, _object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPyRangeVar_init, self, args, kwds); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(NPyRangeVar *&, _object *&, _object *&))(NPyRangeVar *, _object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *&))(NPySecObj *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *), NPySecObj *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:709:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *), Args = <NPySecObj *&>] | |
| return nrn::convert_cxx_exceptions(NPySecObj_name, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *&))(NPySecObj *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *&, _object *&))(NPySecObj *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *, _object *), NPySecObj *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:756:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *, _object *), Args = <NPySecObj *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPySecObj_pt3dclear, self, args); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *&, _object *&))(NPySecObj *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&))(_object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *), _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:976:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *), Args = <_object *&>] | |
| return nrn::convert_cxx_exceptions(pysec_repr, p); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&))(_object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, _object *), _object *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1029:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, _object *), Args = <_object *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(nrnpy_set_psection, self, args); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, _object *&))(_object *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *const &))(NPySecObj *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *), NPySecObj *const &>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1179:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *), Args = <NPySecObj *const &>] | |
| return nrn::convert_cxx_exceptions(pysec_children, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *const &))(NPySecObj *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<long (*(_object *&))(_object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<long (*)(_object *), _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1247:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = long (*)(_object *), Args = <_object *&>] | |
| return nrn::convert_cxx_exceptions(pysec_hash, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<long (*(_object *&))(_object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegObj *&, _object *&, int &))(NPySegObj *, _object *, int)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegObj *, _object *, int), NPySegObj *&, _object *&, int &>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1273:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegObj *, _object *, int), Args = <NPySegObj *&, _object *&, int &>] | |
| return nrn::convert_cxx_exceptions(pyseg_richcmp, self, other, op); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegObj *&, _object *&, int &))(NPySegObj *, _object *, int)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySecObj *&, _object *&, int &))(NPySecObj *, _object *, int)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySecObj *, _object *, int), NPySecObj *&, _object *&, int &>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1296:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySecObj *, _object *, int), Args = <NPySecObj *&, _object *&, int &>] | |
| return nrn::convert_cxx_exceptions(pysec_richcmp, self, other, op); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySecObj *&, _object *&, int &))(NPySecObj *, _object *, int)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechObj *&))(NPyMechObj *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechObj *), NPyMechObj *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1330:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechObj *), Args = <NPyMechObj *&>] | |
| return nrn::convert_cxx_exceptions(NPyMechObj_name, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechObj *&))(NPyMechObj *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechFunc *&))(NPyMechFunc *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechFunc *), NPyMechFunc *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1343:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechFunc *), Args = <NPyMechFunc *&>] | |
| return nrn::convert_cxx_exceptions(NPyMechFunc_name, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechFunc *&))(NPyMechFunc *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechFunc *&, _object *&))(NPyMechFunc *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechFunc *, _object *), NPyMechFunc *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1373:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechFunc *, _object *), Args = <NPyMechFunc *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(NPyMechFunc_call, self, args); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechFunc *&, _object *&))(NPyMechFunc *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyRangeVar *&))(NPyRangeVar *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyRangeVar *), NPyRangeVar *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1452:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyRangeVar *), Args = <NPyRangeVar *&>] | |
| return nrn::convert_cxx_exceptions(NPyRangeVar_name, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyRangeVar *&))(NPyRangeVar *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyAllSegOfSecIter *&))(NPyAllSegOfSecIter *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyAllSegOfSecIter *), NPyAllSegOfSecIter *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1662:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyAllSegOfSecIter *), Args = <NPyAllSegOfSecIter *&>] | |
| return nrn::convert_cxx_exceptions(allseg_of_sec_iter, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyAllSegOfSecIter *&))(NPyAllSegOfSecIter *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegOfSecIter *&))(NPySegOfSecIter *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegOfSecIter *), NPySegOfSecIter *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1714:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegOfSecIter *), Args = <NPySegOfSecIter *&>] | |
| return nrn::convert_cxx_exceptions(seg_of_sec_next, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegOfSecIter *&))(NPySegOfSecIter *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegObj *&))(NPySegObj *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegObj *), NPySegObj *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:1735:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegObj *), Args = <NPySegObj *&>] | |
| return nrn::convert_cxx_exceptions(seg_point_processes, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegObj *&))(NPySegObj *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechOfSegIter *&))(NPyMechOfSegIter *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechOfSegIter *), NPyMechOfSegIter *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2159:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechOfSegIter *), Args = <NPyMechOfSegIter *&>] | |
| return nrn::convert_cxx_exceptions(mech_of_seg_next, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechOfSegIter *&))(NPyMechOfSegIter *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyVarOfMechIter *&))(NPyVarOfMechIter *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyVarOfMechIter *), NPyVarOfMechIter *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2199:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyVarOfMechIter *), Args = <NPyVarOfMechIter *&>] | |
| return nrn::convert_cxx_exceptions(var_of_mech_next, self); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyVarOfMechIter *&))(NPyVarOfMechIter *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPySegObj *&, _object *&))(NPySegObj *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPySegObj *, _object *), NPySegObj *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2316:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPySegObj *, _object *), Args = <NPySegObj *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(segment_getattro, self, pyname); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPySegObj *&, _object *&))(NPySegObj *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(NPyMechObj *&, _object *&))(NPyMechObj *, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(NPyMechObj *, _object *), NPyMechObj *&, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2560:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(NPyMechObj *, _object *), Args = <NPyMechObj *&, _object *&>] | |
| return nrn::convert_cxx_exceptions(mech_getattro, self, pyname); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(NPyMechObj *&, _object *&))(NPyMechObj *, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<_object *(*(_object *&, long &))(_object *, long)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<_object *(*)(_object *, long), _object *&, long &>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2706:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = _object *(*)(_object *, long), Args = <_object *&, long &>] | |
| return nrn::convert_cxx_exceptions(rv_getitem, self, ix); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<_object *(*(_object *&, long &))(_object *, long)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| In file included from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:11: | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:32:39: warning: 'result_of<int (*(_object *&, long &, _object *&))(_object *, long, _object *)>' is deprecated [-Wdeprecated-declarations] | |
| using return_type = typename std::result_of<F(Args...)>::type; | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/convert_cxx_exceptions.hpp:40:17: note: in instantiation of template class 'nrn::convert_cxx_exceptions_trait<int (*)(_object *, long, _object *), _object *&, long &, _object *&>' requested here | |
| static typename convert_cxx_exceptions_trait<F, Args...>::return_type convert_cxx_exceptions( | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnpython/nrnpy_nrn.cpp:2754:12: note: while substituting deduced template arguments into function template 'convert_cxx_exceptions' [with F = int (*)(_object *, long, _object *), Args = <_object *&, long &, _object *&>] | |
| return nrn::convert_cxx_exceptions(rv_setitem, self, ix, value); | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/type_traits:4009:34: note: 'result_of<int (*(_object *&, long &, _object *&))(_object *, long, _object *)>' has been explicitly marked deprecated here | |
| template <class _Callable> class _LIBCPP_DEPRECATED_IN_CXX17 result_of; | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1066:39: note: expanded from macro '_LIBCPP_DEPRECATED_IN_CXX17' | |
| # define _LIBCPP_DEPRECATED_IN_CXX17 _LIBCPP_DEPRECATED | |
| ^ | |
| /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/include/c++/v1/__config:1043:48: note: expanded from macro '_LIBCPP_DEPRECATED' | |
| # define _LIBCPP_DEPRECATED __attribute__ ((deprecated)) | |
| ^ | |
| 29 warnings generated. | |
| [695/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_cumulative_base.cpp.o | |
| [696/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_registrars.cpp.o | |
| [697/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_helpers.cpp.o | |
| [698/1930] Running nrnivmodl-core with internal mod files | |
| WARNING: No mod files found in '/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/bin', compiling default ones only! | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build MECHLIB_SUFFIX=internal NMODL_BINARY=/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/bin/nmodl MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| [699/1930] Building CXX object external/catch2/src/CMakeFiles/Catch2.dir/catch2/reporters/catch_reporter_streaming_base.cpp.o | |
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| [702/1930] Building CXX object src/nrnpython/CMakeFiles/nrnpython.dir/rxd.cpp.o | |
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| [707/1930] Generating ../nrnoc/apcount.cpp | |
| Translating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/apcount.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/apcount.cpp | |
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| Translating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/exp2syn.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/exp2syn.cpp | |
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| Translating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/expsyn.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/expsyn.cpp | |
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| Translating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/feature.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/feature.cpp | |
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| Translating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/netstim.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/netstim.cpp | |
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| Translating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/oclmp.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/oclmp.cpp | |
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| Translating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/pattern.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/pattern.cpp | |
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| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
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| Translating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/passive.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/passive.cpp | |
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| Translating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/stim.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/stim.cpp | |
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| Translating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/svclmp.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/svclmp.cpp | |
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| Translating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/vclmp.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/vclmp.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
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| Translating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/syn.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/nrnoc/syn.cpp | |
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| [1246/1930] Generating nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/vlag.mod | |
| [1247/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/atest.mod | |
| [1248/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand.mod | |
| [1249/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand_art.mod | |
| [1250/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/rand_pp.mod | |
| [1251/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata.mod | |
| [1252/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata.inc | |
| [1253/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_pp.mod | |
| [1254/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_ppts.mod | |
| [1255/1930] Generating nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/sdata_ts.mod | |
| [1256/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/follower.mod | |
| [1257/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/gap.mod | |
| [1258/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/name_clashes.mod | |
| [1259/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/unitstest.mod | |
| [1260/1930] Generating nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/version_macros.mod | |
| [1261/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/cadif.mod | |
| [1262/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/disc.mod | |
| [1263/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/fornetcon.mod | |
| [1264/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/hhwatch.mod | |
| [1265/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/k3st.mod | |
| [1266/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/table.mod | |
| [1267/1930] Generating nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/variabletypes.mod | |
| [1268/1930] Running utility command for hoc_module | |
| INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS,CORENRN_BUILD=0 | |
| INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk | |
| WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org | |
| WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0 | |
| INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'}) | |
| INFO:root:RX3D is DISABLED | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. | |
| !! | |
| ******************************************************************************** | |
| Requirements should be satisfied by a PEP 517 installer. | |
| If you are using pip, you can try `pip install --use-pep517`. | |
| ******************************************************************************** | |
| !! | |
| dist.fetch_build_eggs(dist.setup_requires) | |
| WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' | |
| Traceback (most recent call last): | |
| File "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject | |
| section = defn.get("tool", {})[tool_name] | |
| KeyError: 'setuptools_scm' | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:167: UserWarning: "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn" is shallow and may cause errors | |
| warnings.warn(f'"{wd.path}" is shallow and may cause errors') | |
| INFO:root:running build | |
| INFO:root:running build_py | |
| INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:creating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:creating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:creating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/coreneuron_available.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:creating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:creating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
| INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
| INFO:root:creating /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:running build_ext | |
| INFO:root:==> Building Python extensions | |
| INFO:root:building 'neuron.hoc' extension | |
| INFO:root:/usr/bin/gcc -Wno-unused-result -Wsign-compare -Wunreachable-code -fno-common -dynamic -DNDEBUG -g -fwrapv -O3 -Wall -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -DNRN_ASAN_ENABLED=1 -DUSE_PYTHON=1 -DNRN_ENABLE_THREADS=1 -DCORENRN_BUILD=0=1 -Isrc -Isrc/oc -Isrc/nrnpython -Isrc/nrnmpi -I/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/src -I/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/src/oc -I/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/src/nrnpython -I/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/src/nrnmpi -I/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/include -I/opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 -c src/nrnpython/inithoc.cpp -o /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -std=c++17 | |
| INFO:root:/usr/bin/g++ -bundle -undefined dynamic_lookup -isysroot /Library/Developer/CommandLineTools/SDKs/MacOSX12.sdk -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/src/nrnpython/inithoc.o -L/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib -lnrniv -o /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/hoc.cpython-310-darwin.so -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -Wl,-rpath,/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin -Wl,-rpath,@loader_path/../../ | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| INFO:root:running build_scripts | |
| INFO:root:creating build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrniv -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrngui -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nmodl -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrniv-core -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnpyenv.sh -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl-core -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/neurondemo -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/nrnivmodl -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/modlunit -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/idraw -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/sortspike -> build/scripts-3.10 | |
| INFO:root:copying and adjusting share/lib/python/scripts/mkthreadsafe -> build/scripts-3.10 | |
| INFO:root:changing mode of build/scripts-3.10/nrniv from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrngui from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nmodl from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrniv-core from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnpyenv.sh from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnivmodl-core from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/neurondemo from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/nrnivmodl from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/modlunit from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/idraw from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/sortspike from 644 to 755 | |
| INFO:root:changing mode of build/scripts-3.10/mkthreadsafe from 644 to 755 | |
| [1269/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.inc | |
| [1270/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial.mod | |
| [1271/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/axial_pp.mod | |
| [1272/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/bacur.mod | |
| [1273/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/banocur.mod | |
| [1274/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/fornetcon.mod | |
| [1275/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/green.mod | |
| [1276/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/invlfire.mod | |
| [1277/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/natrans.mod | |
| [1278/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/netmove.mod | |
| [1279/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/noisychan.mod | |
| [1280/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/red.mod | |
| [1281/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/sample.mod | |
| [1282/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/unitstest.mod | |
| [1283/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/version_macros.mod | |
| [1284/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange.mod | |
| [1285/1930] Generating nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/watchrange2.mod | |
| [1286/1930] Building special[-core] for test group datahandle | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453 | |
| cfiles = | |
| Mod files: "./opaque_token.mod" "./ptr.mod" | |
| MODOBJS= ./opaque_token.o ./ptr.o | |
| -> NMODL .././opaque_token.mod | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././ptr.mod | |
| Translating ptr.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/ptr.cpp | |
| Translating opaque_token.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/opaque_token.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/7378b0d1010df9fb9d314452ba3c6ac85ab5bcd507940792ff794d6831e1b453/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1287/1930] Generating datahandle/datahandle_tests/test/datahandle/test_1.py | |
| [1288/1930] Generating datahandle/datahandle_tests/test/datahandle/test_token.py | |
| [1289/1930] Linking CXX executable bin/test/hh_sim_cpp | |
| [1290/1930] Linking CXX executable bin/test/netcon_cpp | |
| [1291/1930] Linking CXX executable bin/test/sections_c | |
| [1292/1930] Linking CXX executable bin/test/vclamp_cpp | |
| [1293/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Ca.mod | |
| [1294/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_CadepK.mod | |
| [1295/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KA.mod | |
| [1296/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRf.mod | |
| [1297/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_KDRs.mod | |
| [1298/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Aradi_Na.mod | |
| [1299/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/CaBK.mod | |
| [1300/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_M.mod | |
| [1301/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_UK.mod | |
| [1302/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/DGC_sAHP.mod | |
| [1303/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/Gfluct3.mod | |
| [1304/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/LcaMig.mod | |
| [1305/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_KIn.mod | |
| [1306/1930] Building special[-core] for test group coverage_tests | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51 | |
| cfiles = | |
| Mod files: "./ppxsrc.mod" | |
| MODOBJS= ./ppxsrc.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././ppxsrc.mod | |
| Translating ppxsrc.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/ppxsrc.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/fb5fb42ddab2ff650e8e4e789eb94701174e41ce7edaa51ad58d4fd93f798b51/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1307/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/SH_na8st.mod | |
| [1308/1930] Generating coverage_tests/cover_tests/test/cover/test_netcvode.json | |
| [1309/1930] Generating coverage_tests/cover_tests/test/cover/test_netcvode.py | |
| [1310/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/bgka.mod | |
| [1311/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ccanl.mod | |
| [1312/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ggap.mod | |
| [1313/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/gskch.mod | |
| [1314/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/holdingi.mod | |
| [1315/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/hyperde3.mod | |
| [1316/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/ichan2.mod | |
| [1317/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/iconc_Ca.mod | |
| [1318/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/kcaPR.mod | |
| [1319/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/na3n.mod | |
| [1320/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/nca.mod | |
| [1321/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/spines.mod | |
| [1322/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/tca.mod | |
| [1323/1930] Generating ../../nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/vecevent.mod | |
| [1324/1930] Generating ../../nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/halfgap.mod | |
| [1325/1930] Building special[-core] for test group pytest | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c | |
| cfiles = | |
| Mod files: "./mcna.mod" | |
| MODOBJS= ./mcna.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././mcna.mod | |
| Translating mcna.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/mcna.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/8b70050800897334ac3dcf9bccbec23ce253950bb3247c96e6ab2f9c53f6288c/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1326/1930] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.json | |
| [1327/1930] Generating pytest/basic_tests_py3.10/test/pytest/test_nrntest_thread.py | |
| [1328/1930] Generating ../../nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/halfgap.mod | |
| [1329/1930] Building special[-core] for test group parallel | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100 | |
| cfiles = | |
| Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod" | |
| MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o | |
| -> NMODL .././follower.mod | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././gap.mod | |
| -> NMODL .././name_clashes.mod | |
| Translating gap.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp | |
| Thread Safe | |
| -> NMODL .././unitstest.mod | |
| Translating follower.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp | |
| Thread Safe | |
| -> NMODL .././version_macros.mod | |
| Translating name_clashes.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/follower.cpp | |
| Translating version_macros.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/gap.cpp | |
| Translating unitstest.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/name_clashes.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/unitstest.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/version_macros.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/5b499c48b620b3f996279dafe88ff900a32797c8807f2acc88ebe24f2d04a100/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1330/1930] Generating parallel/subworld/test/parallel_tests/test_subworld.py | |
| [1331/1930] Generating parallel/partrans/test/pytest_coreneuron/test_partrans.py | |
| [1332/1930] Generating parallel/netpar/test/pytest_coreneuron/test_hoc_po.py | |
| [1333/1930] Generating parallel/netpar/test/pytest_coreneuron/test_netpar.py | |
| [1334/1930] Generating parallel/bas/test/parallel_tests/test_bas.py | |
| [1335/1930] Generating parallel/nrntest_fast/test/pytest_coreneuron/run_pytest.py | |
| [1336/1930] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.json | |
| [1337/1930] Generating parallel/nrntest_fast/test/pytest_coreneuron/test_nrntest_fast.py | |
| [1338/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/Gfluct3.mod | |
| [1339/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhderiv.mod | |
| [1340/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhkin.mod | |
| [1341/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/hhwatch.mod | |
| [1342/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/nacum.mod | |
| [1343/1930] Generating ../../nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/vecevent.mod | |
| [1344/1930] Building special[-core] for test group nmodl_tests | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5 | |
| cfiles = | |
| Mod files: "./cadif.mod" "./disc.mod" "./fornetcon.mod" "./hhwatch.mod" "./k3st.mod" "./table.mod" "./variabletypes.mod" | |
| MODOBJS= ./cadif.o ./disc.o ./fornetcon.o ./hhwatch.o ./k3st.o ./table.o ./variabletypes.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././cadif.mod | |
| -> NMODL .././disc.mod | |
| -> NMODL .././fornetcon.mod | |
| Translating disc.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp | |
| Notice: DISCRETE is not thread safe. | |
| Notice: This mechanism cannot be used with CVODE | |
| -> NMODL .././hhwatch.mod | |
| Translating cadif.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp | |
| Thread Safe | |
| -> NMODL .././k3st.mod | |
| Translating fornetcon.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp | |
| Thread Safe | |
| -> NMODL .././table.mod | |
| Translating hhwatch.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp | |
| Thread Safe | |
| -> NMODL .././variabletypes.mod | |
| Translating table.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/cadif.cpp | |
| Translating k3st.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp | |
| NEURON's CVode method ignores conservation | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/disc.cpp | |
| Translating variabletypes.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/fornetcon.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/hhwatch.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/k3st.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/table.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/variabletypes.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/ae2c9b73c9a624bce358af1b0042b70ba7c70ce86d0fb0bf97de8ac420156de5/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1345/1930] Generating nmodl_tests/test_table/test/nmodl/test_table.py | |
| [1346/1930] Generating nmodl_tests/test_disc/test/nmodl/test_disc.py | |
| [1347/1930] Generating nmodl_tests/test_function_table/test/nmodl/test_function_table.py | |
| [1348/1930] Generating nmodl_tests/test_kinetic/test/nmodl/test_kinetic.py | |
| [1349/1930] Generating nmodl_tests/test_random/test/nmodl/test_random.py | |
| [1350/1930] Generating nmodl_tests/test_path_spaces/test/nmodl/Project Path Space/test.mod | |
| [1351/1930] Generating nmodl_tests/test_path_spaces/test/nmodl/Project Path Space/test.py | |
| [1352/1930] Generating nmodl_tests_coreneuron/test_table_coreneuron_cpu/test/nmodl/test_table.py | |
| [1353/1930] Generating nmodl_tests_coreneuron/test_disc_coreneuron_cpu/test/nmodl/test_disc.py | |
| [1354/1930] Generating nmodl_tests_coreneuron/test_function_table_coreneuron_cpu/test/nmodl/test_function_table.py | |
| [1355/1930] Generating nmodl_tests_coreneuron/test_kinetic_coreneuron_cpu/test/nmodl/test_kinetic.py | |
| [1356/1930] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfire.mod | |
| [1357/1930] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfiresha.mod | |
| [1358/1930] Generating ../../nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/invlfirestats.mod | |
| [1359/1930] Building special[-core] for test group hoctests | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad | |
| cfiles = | |
| Mod files: "./atest.mod" "./rand.mod" "./rand_art.mod" "./rand_pp.mod" "./sdata.mod" "./sdata_pp.mod" "./sdata_ppts.mod" "./sdata_ts.mod" | |
| MODOBJS= ./atest.o ./rand.o ./rand_art.o ./rand_pp.o ./sdata.o ./sdata_pp.o ./sdata_ppts.o ./sdata_ts.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././atest.mod | |
| -> NMODL .././rand.mod | |
| -> NMODL .././rand_art.mod | |
| Translating rand_art.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_art.cpp | |
| Thread Safe | |
| -> NMODL .././rand_pp.mod | |
| Translating rand.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand.cpp | |
| Thread Safe | |
| -> NMODL .././sdata.mod | |
| Translating atest.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/atest.cpp | |
| Thread Safe | |
| -> NMODL .././sdata_pp.mod | |
| Translating rand_pp.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_pp.cpp | |
| Thread Safe | |
| -> NMODL .././sdata_ppts.mod | |
| Translating sdata.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata.cpp | |
| INCLUDEing sdata.inc | |
| Notice: Use of POINTER is not thread safe. | |
| Notice: VERBATIM blocks are not thread safe | |
| -> NMODL .././sdata_ts.mod | |
| Translating sdata_pp.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_pp.cpp | |
| INCLUDEing sdata.inc | |
| Notice: Use of POINTER is not thread safe. | |
| Notice: VERBATIM blocks are not thread safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/atest.cpp | |
| Translating sdata_ppts.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ppts.cpp | |
| INCLUDEing sdata.inc | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand.cpp | |
| Translating sdata_ts.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ts.cpp | |
| INCLUDEing sdata.inc | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_art.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/rand_pp.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_pp.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ppts.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/sdata_ts.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/39368a3f2faa5c7f6c1a704095364be6ec3af30bbfc8f85c1eef2176aae784ad/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1360/1930] Generating hoctests/test_loadbal_hoc/expect_err.hoc | |
| [1361/1930] Generating hoctests/test_loadbal_hoc/tests/test_loadbal.hoc | |
| [1362/1930] Generating hoctests/test_random_hoc/expect_err.hoc | |
| [1363/1930] Generating hoctests/test_random_hoc/tests/test_random.hoc | |
| [1364/1930] Generating hoctests/test_random_hoc/tests/test_random.json | |
| [1365/1930] Generating hoctests/perf1_hoc/expect_err.hoc | |
| [1366/1930] Generating hoctests/perf1_hoc/vardimtests/perf1.hoc | |
| [1367/1930] Generating hoctests/test1_hoc/expect_err.hoc | |
| [1368/1930] Generating hoctests/test1_hoc/vardimtests/test1.hoc | |
| [1369/1930] Generating hoctests/test2_hoc/expect_err.hoc | |
| [1370/1930] Generating hoctests/test2_hoc/vardimtests/test2.hoc | |
| [1371/1930] Generating hoctests/test3_hoc/expect_err.hoc | |
| [1372/1930] Generating hoctests/test3_hoc/vardimtests/test3.hoc | |
| [1373/1930] Generating hoctests/test4_hoc/expect_err.hoc | |
| [1374/1930] Generating hoctests/test4_hoc/vardimtests/test4.hoc | |
| [1375/1930] Generating hoctests/test5_hoc/expect_err.hoc | |
| [1376/1930] Generating hoctests/test5_hoc/vardimtests/test5.hoc | |
| [1377/1930] Generating hoctests/test6_hoc/expect_err.hoc | |
| [1378/1930] Generating hoctests/test6_hoc/vardimtests/test6.hoc | |
| [1379/1930] Generating hoctests/test7_hoc/expect_err.hoc | |
| [1380/1930] Generating hoctests/test7_hoc/vardimtests/test7.hoc | |
| [1381/1930] Generating hoctests/test8_hoc/expect_err.hoc | |
| [1382/1930] Generating hoctests/test8_hoc/vardimtests/test8.hoc | |
| [1383/1930] Generating hoctests/test9_hoc/expect_err.hoc | |
| [1384/1930] Generating hoctests/test9_hoc/vardimtests/test9.hoc | |
| [1385/1930] Generating hoctests/test_bbss_py/tests/test_bbss.py | |
| [1386/1930] Generating hoctests/test_cvinterp_py/tests/test_cvinterp.py | |
| [1387/1930] Generating hoctests/test_hocGUI2_py/tests/test_hocGUI2.py | |
| [1388/1930] Generating hoctests/test_hocmech_py/tests/test_hocmech.py | |
| [1389/1930] Generating hoctests/test_kschan_py/tests/test_kschan.json | |
| [1390/1930] Generating hoctests/test_kschan_py/tests/test_kschan.py | |
| [1391/1930] Generating hoctests/test_legacy_setpointer_py/tests/test_legacy_setpointer.py | |
| [1392/1930] Generating hoctests/test_mechfunc_py/tests/test_mechfunc.py | |
| [1393/1930] Generating hoctests/test_mechstd_py/tests/test_mechstd.py | |
| [1394/1930] Generating hoctests/test_mode_py/tests/test_mode.py | |
| [1395/1930] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.json | |
| [1396/1930] Generating hoctests/test_neurondemo_py/tests/test_neurondemo.py | |
| [1397/1930] Generating hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py | |
| [1398/1930] Generating hoctests/test_optim_node_order_py/tests/test_optim_node_order.json | |
| [1399/1930] Generating hoctests/test_optim_node_order_py/tests/test_optim_node_order.py | |
| [1400/1930] Generating hoctests/test_random_py/tests/test_random.json | |
| [1401/1930] Generating hoctests/test_random_py/tests/test_random.py | |
| [1402/1930] Generating hoctests/test_setdata_py/tests/test_setdata.py | |
| [1403/1930] Generating hoctests/test_shape_py/tests/test_shape.py | |
| [1404/1930] Generating hoctests/test_thread_partition_py/tests/test_thread_partition.py | |
| [1405/1930] Generating hoctests/test1_py/vardimtests/test1.py | |
| [1406/1930] Generating hoctests/test2_py/vardimtests/test2.py | |
| [1407/1930] Generating hoctests/test9_py/vardimtests/test9.py | |
| [1408/1930] Building special[-core] for test group external_ringtest_nrn | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295 | |
| cfiles = | |
| Mod files: "./halfgap.mod" | |
| MODOBJS= ./halfgap.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././halfgap.mod | |
| Translating halfgap.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/halfgap.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/halfgap.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/bbd7c82eee28b931214a8172bb776ba66c406a6620c807381c850fedcdd74295/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1409/1930] Generating ../../external_ringtest_nrn/optim_node_order/args.py | |
| [1410/1930] Generating ../../external_ringtest_nrn/optim_node_order/cell.hoc | |
| [1411/1930] Generating ../../external_ringtest_nrn/optim_node_order/commonutils.py | |
| [1412/1930] Generating ../../external_ringtest_nrn/optim_node_order/celluniform.hoc | |
| [1413/1930] Generating ../../external_ringtest_nrn/optim_node_order/ranparm.py | |
| [1414/1930] Generating ../../external_ringtest_nrn/optim_node_order/ring.py | |
| [1415/1930] Generating ../../external_ringtest_nrn/optim_node_order/ringtest.py | |
| [1416/1930] Generating ../../external_ringtest_nrn/optim_node_order/ringuniform.py | |
| [1417/1930] Generating ../../external_ringtest_nrn/optim_node_order/settings.py | |
| [1418/1930] Generating ../../external_ringtest_nrn/optim_node_order/test_optimize_node_order.py | |
| [1419/1930] Generating share/nrn/demo/release/arm64/special, share/nrn/demo/release/arm64/libnrnmech.dylib | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release | |
| cfiles = | |
| Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod" | |
| MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o | |
| -> NMODL ../cabpump.mod | |
| -> Compiling mod_func.cpp | |
| -> NMODL ../cachan1.mod | |
| -> NMODL ../camchan.mod | |
| Translating cachan1.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp | |
| Thread Safe | |
| -> NMODL ../capump.mod | |
| Translating camchan.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp | |
| Thread Safe | |
| -> NMODL ../invlfire.mod | |
| Translating cabpump.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp | |
| Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
| -> NMODL ../khhchan.mod | |
| Translating invlfire.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp | |
| Thread Safe | |
| -> NMODL ../nacaex.mod | |
| Translating capump.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp | |
| Thread Safe | |
| -> NMODL ../nachan.mod | |
| Translating khhchan.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp | |
| Thread Safe | |
| -> NMODL ../release.mod | |
| Translating nachan.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp | |
| Thread Safe | |
| Translating nacaex.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cabpump.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/cachan1.cpp | |
| Translating release.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/camchan.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/capump.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/invlfire.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/khhchan.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nacaex.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/nachan.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/release.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/nrn/demo/release/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1420/1930] Building special[-core] for test group pytest_coreneuron | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0 | |
| cfiles = | |
| Mod files: "./follower.mod" "./gap.mod" "./name_clashes.mod" "./unitstest.mod" "./version_macros.mod" | |
| MODOBJS= ./follower.o ./gap.o ./name_clashes.o ./unitstest.o ./version_macros.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././follower.mod | |
| -> NMODL .././gap.mod | |
| -> NMODL .././name_clashes.mod | |
| Translating gap.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp | |
| Thread Safe | |
| -> NMODL .././unitstest.mod | |
| Translating name_clashes.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp | |
| Thread Safe | |
| -> NMODL .././version_macros.mod | |
| Translating follower.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/follower.cpp | |
| Translating version_macros.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp | |
| Thread Safe | |
| Translating unitstest.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/gap.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/name_clashes.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/unitstest.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/version_macros.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c448d279dd3b91940d228c42e4a7c280bafe100b4e840f9c938be979cceb8fe0/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1421/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/run_pytest.py | |
| [1422/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/gui_pycallobject.py | |
| [1423/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_a_neuronoptions.py | |
| [1424/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_basic.py | |
| [1425/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_bbss.py | |
| [1426/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_coreneuron_configuration.py | |
| [1427/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_fast_imem.py | |
| [1428/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_hoc_po.py | |
| [1429/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_imem.py | |
| [1430/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_inheritance.py | |
| [1431/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_loadbal.py | |
| [1432/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_memory_usage.py | |
| [1433/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_netpar.py | |
| [1434/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_multigid.py | |
| [1435/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nlayer.py | |
| [1436/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrnste.py | |
| [1437/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.json | |
| [1438/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_nrntest_fast.py | |
| [1439/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_partrans.py | |
| [1440/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_py2nrnstring.py | |
| [1441/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pycallobject.py | |
| [1442/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_pyobj.py | |
| [1443/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_swc.py | |
| [1444/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_template_err.py | |
| [1445/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_vector_api.py | |
| [1446/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_version_macros.py | |
| [1447/1930] Generating pytest_coreneuron/basic_tests_py3.10/test/pytest_coreneuron/test_zptrlist.py | |
| [1448/1930] Building special[-core] for test group external_ringtest | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff | |
| cfiles = | |
| Mod files: "./halfgap.mod" | |
| MODOBJS= ./halfgap.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././halfgap.mod | |
| Translating halfgap.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/halfgap.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/a9c54b18e4b54351cb4fd3e79067cafa02da4514b4383a54de8ff121657615ff/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1449/1930] Generating ../../external_ringtest/neuron/cell.hoc | |
| [1450/1930] Generating ../../external_ringtest/neuron/ranparm.py | |
| [1451/1930] Generating ../../external_ringtest/neuron/celluniform.hoc | |
| [1452/1930] Generating ../../external_ringtest/neuron/args.py | |
| [1453/1930] Generating ../../external_ringtest/neuron/commonutils.py | |
| [1454/1930] Generating ../../external_ringtest/neuron/ringuniform.py | |
| [1455/1930] Generating ../../external_ringtest/neuron/ring.py | |
| [1456/1930] Generating ../../external_ringtest/neuron/ringtest.py | |
| [1457/1930] Generating ../../external_ringtest/neuron/settings.py | |
| [1458/1930] Generating ../../external_ringtest/neuron/test_optimize_node_order.py | |
| [1459/1930] Generating ../../external_ringtest/neuron_mpi/args.py | |
| [1460/1930] Generating ../../external_ringtest/neuron_mpi/cell.hoc | |
| [1461/1930] Generating ../../external_ringtest/neuron_mpi/celluniform.hoc | |
| [1462/1930] Generating ../../external_ringtest/neuron_mpi/commonutils.py | |
| [1463/1930] Generating ../../external_ringtest/neuron_mpi/ranparm.py | |
| [1464/1930] Generating ../../external_ringtest/neuron_mpi/ring.py | |
| [1465/1930] Generating ../../external_ringtest/neuron_mpi/ringtest.py | |
| [1466/1930] Generating ../../external_ringtest/neuron_mpi/ringuniform.py | |
| [1467/1930] Generating ../../external_ringtest/neuron_mpi/settings.py | |
| [1468/1930] Generating ../../external_ringtest/neuron_mpi/test_optimize_node_order.py | |
| [1469/1930] Generating ../../external_ringtest/neuron_mpi_python/args.py | |
| [1470/1930] Generating ../../external_ringtest/neuron_mpi_python/cell.hoc | |
| [1471/1930] Generating ../../external_ringtest/neuron_mpi_python/celluniform.hoc | |
| [1472/1930] Generating ../../external_ringtest/neuron_mpi_python/commonutils.py | |
| [1473/1930] Generating ../../external_ringtest/neuron_mpi_python/ring.py | |
| [1474/1930] Generating ../../external_ringtest/neuron_mpi_python/ranparm.py | |
| [1475/1930] Generating ../../external_ringtest/neuron_mpi_python/ringtest.py | |
| [1476/1930] Generating ../../external_ringtest/neuron_mpi_python/test_optimize_node_order.py | |
| [1477/1930] Generating ../../external_ringtest/neuron_mpi_python/ringuniform.py | |
| [1478/1930] Generating ../../external_ringtest/neuron_mpi_python/settings.py | |
| [1479/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/cell.hoc | |
| [1480/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/args.py | |
| [1481/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/celluniform.hoc | |
| [1482/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/commonutils.py | |
| [1483/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ring.py | |
| [1484/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ranparm.py | |
| [1485/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringtest.py | |
| [1486/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/settings.py | |
| [1487/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/ringuniform.py | |
| [1488/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/args.py | |
| [1489/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline_saverestore/test_optimize_node_order.py | |
| [1490/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/cell.hoc | |
| [1491/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/celluniform.hoc | |
| [1492/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/commonutils.py | |
| [1493/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/ranparm.py | |
| [1494/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/ring.py | |
| [1495/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringtest.py | |
| [1496/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/settings.py | |
| [1497/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/ringuniform.py | |
| [1498/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi/test_optimize_node_order.py | |
| [1499/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/args.py | |
| [1500/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/cell.hoc | |
| [1501/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/commonutils.py | |
| [1502/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/celluniform.hoc | |
| [1503/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ranparm.py | |
| [1504/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringuniform.py | |
| [1505/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ring.py | |
| [1506/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/ringtest.py | |
| [1507/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/settings.py | |
| [1508/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_python/test_optimize_node_order.py | |
| [1509/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/cell.hoc | |
| [1510/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/args.py | |
| [1511/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/celluniform.hoc | |
| [1512/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ranparm.py | |
| [1513/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/commonutils.py | |
| [1514/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringtest.py | |
| [1515/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ring.py | |
| [1516/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/ringuniform.py | |
| [1517/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/settings.py | |
| [1518/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_offline/test_optimize_node_order.py | |
| [1519/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/args.py | |
| [1520/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/cell.hoc | |
| [1521/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/celluniform.hoc | |
| [1522/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/commonutils.py | |
| [1523/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ranparm.py | |
| [1524/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ring.py | |
| [1525/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringuniform.py | |
| [1526/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/settings.py | |
| [1527/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/ringtest.py | |
| [1528/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads/test_optimize_node_order.py | |
| [1529/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/args.py | |
| [1530/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/cell.hoc | |
| [1531/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ring.py | |
| [1532/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/commonutils.py | |
| [1533/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/celluniform.hoc | |
| [1534/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ranparm.py | |
| [1535/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringtest.py | |
| [1536/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/ringuniform.py | |
| [1537/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/settings.py | |
| [1538/1930] Generating ../../external_ringtest/coreneuron_cpu_mpi_threads_python/test_optimize_node_order.py | |
| [1539/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/args.py | |
| [1540/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/cell.hoc | |
| [1541/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/celluniform.hoc | |
| [1542/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/commonutils.py | |
| [1543/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ranparm.py | |
| [1544/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ring.py | |
| [1545/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ringtest.py | |
| [1546/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/ringuniform.py | |
| [1547/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/test_optimize_node_order.py | |
| [1548/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_directmode/settings.py | |
| [1549/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/args.py | |
| [1550/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/cell.hoc | |
| [1551/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/celluniform.hoc | |
| [1552/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/commonutils.py | |
| [1553/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ranparm.py | |
| [1554/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ring.py | |
| [1555/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ringuniform.py | |
| [1556/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/ringtest.py | |
| [1557/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/settings.py | |
| [1558/1930] Generating ../../external_ringtest/coreneuron_mpi_registermapping_filemode/test_optimize_node_order.py | |
| [1559/1930] Building special[-core] for test group tqperf | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951 | |
| cfiles = | |
| Mod files: "./invlfire.mod" "./invlfiresha.mod" "./invlfirestats.mod" | |
| MODOBJS= ./invlfire.o ./invlfiresha.o ./invlfirestats.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build INCFLAGS=-I/opt/homebrew/Cellar/openssl@3/3.2.0_1/include LINKFLAGS=/opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: Can not inline function call to specify_invl | |
| [NMODL] [warning] :: Can not inline function call to specify_invl | |
| [NMODL] [warning] :: Can not inline function call to specify_invl | |
| [NMODL] [warning] :: Can not inline function call to specify_invl | |
| [NMODL] [warning] :: Can not inline function call to specify_invl | |
| [NMODL] [warning] :: Can not inline function call to specify_invl | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| arm64/corenrn/mod2c/invlfiresha.cpp:313:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations] | |
| int status = SHA1_Init((SHA_CTX*)(*ctx)); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here | |
| OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
| # define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
| # define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
| ^ | |
| arm64/corenrn/mod2c/invlfiresha.cpp:318:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations] | |
| int status = SHA1_Update((SHA_CTX*)ctx, data, len); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here | |
| OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
| # define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
| # define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
| ^ | |
| arm64/corenrn/mod2c/invlfiresha.cpp:329:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations] | |
| int status = SHA1_Final(u.md, (SHA_CTX*)ctx); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here | |
| OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
| # define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
| # define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
| ^ | |
| 3 warnings generated. | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././invlfiresha.mod | |
| -> NMODL .././invlfire.mod | |
| -> NMODL .././invlfirestats.mod | |
| Translating invlfirestats.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp | |
| Translating invlfire.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp | |
| Translating invlfiresha.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfire.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfirestats.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:371:16: warning: 'SHA1_Init' is deprecated [-Wdeprecated-declarations] | |
| int status = SHA1_Init((SHA_CTX*)(*ctx)); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:49:1: note: 'SHA1_Init' has been explicitly marked deprecated here | |
| OSSL_DEPRECATEDIN_3_0 int SHA1_Init(SHA_CTX *c); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
| # define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
| # define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:376:16: warning: 'SHA1_Update' is deprecated [-Wdeprecated-declarations] | |
| int status = SHA1_Update((SHA_CTX*)ctx, data, len); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:50:1: note: 'SHA1_Update' has been explicitly marked deprecated here | |
| OSSL_DEPRECATEDIN_3_0 int SHA1_Update(SHA_CTX *c, const void *data, size_t len); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
| # define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
| # define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
| ^ | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/invlfiresha.cpp:387:16: warning: 'SHA1_Final' is deprecated [-Wdeprecated-declarations] | |
| int status = SHA1_Final(u.md, (SHA_CTX*)ctx); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/sha.h:51:1: note: 'SHA1_Final' has been explicitly marked deprecated here | |
| OSSL_DEPRECATEDIN_3_0 int SHA1_Final(unsigned char *md, SHA_CTX *c); | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:194:49: note: expanded from macro 'OSSL_DEPRECATEDIN_3_0' | |
| # define OSSL_DEPRECATEDIN_3_0 OSSL_DEPRECATED(3.0) | |
| ^ | |
| /opt/homebrew/Cellar/openssl@3/3.2.0_1/include/openssl/macros.h:62:52: note: expanded from macro 'OSSL_DEPRECATED' | |
| # define OSSL_DEPRECATED(since) __attribute__((deprecated)) | |
| ^ | |
| 3 warnings generated. | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/358a2005c5c0c89444ba4a268056fedbea5728b0d3948c6488fe911d6bafc951/arm64/./special" LDFLAGS are: /opt/homebrew/Cellar/openssl@3/3.2.0_1/lib/libcrypto.dylib | |
| Successfully created arm64/special | |
| [1560/1930] Generating ../../tqperf/coreneuron_special/mosinit.hoc | |
| [1561/1930] Generating ../../tqperf/coreneuron_special/init.hoc | |
| [1562/1930] Generating ../../tqperf/coreneuron_special/extracell.hoc | |
| [1563/1930] Generating ../../tqperf/coreneuron_special/invl.hoc | |
| [1564/1930] Generating ../../tqperf/coreneuron_special/movie.hoc | |
| [1565/1930] Generating ../../tqperf/coreneuron_special/net.hoc | |
| [1566/1930] Generating ../../tqperf/coreneuron_special/pltq.hoc | |
| [1567/1930] Generating ../../tqperf/coreneuron_special/param.hoc | |
| [1568/1930] Generating ../../tqperf/coreneuron_special/perfrun.hoc | |
| [1569/1930] Generating ../../tqperf/coreneuron_special/randist.hoc | |
| [1570/1930] Generating ../../tqperf/coreneuron_special/run.hoc | |
| [1571/1930] Generating ../../tqperf/coreneuron_special/run128.hoc | |
| [1572/1930] Generating ../../tqperf/coreneuron_special/runs.hoc | |
| [1573/1930] Generating ../../tqperf/coreneuron_special/spike2file.hoc | |
| [1574/1930] Generating ../../tqperf/coreneuron_special/spkplt.hoc | |
| [1575/1930] Generating ../../tqperf/coreneuron_special/table.hoc | |
| [1576/1930] Generating ../../tqperf/coreneuron_special/test1.py | |
| [1577/1930] Generating ../../tqperf/coreneuron_special/tperf.hoc | |
| [1578/1930] Generating ../../tqperf/coreneuron_python/extracell.hoc | |
| [1579/1930] Generating ../../tqperf/coreneuron_special/tperfnew.hoc | |
| [1580/1930] Generating ../../tqperf/coreneuron_python/init.hoc | |
| [1581/1930] Generating ../../tqperf/coreneuron_python/invl.hoc | |
| [1582/1930] Generating ../../tqperf/coreneuron_python/mosinit.hoc | |
| [1583/1930] Generating ../../tqperf/coreneuron_python/net.hoc | |
| [1584/1930] Generating ../../tqperf/coreneuron_python/movie.hoc | |
| [1585/1930] Generating ../../tqperf/coreneuron_python/param.hoc | |
| [1586/1930] Generating ../../tqperf/coreneuron_python/perfrun.hoc | |
| [1587/1930] Generating ../../tqperf/coreneuron_python/pltq.hoc | |
| [1588/1930] Generating ../../tqperf/coreneuron_python/randist.hoc | |
| [1589/1930] Generating ../../tqperf/coreneuron_python/run.hoc | |
| [1590/1930] Generating ../../tqperf/coreneuron_python/run128.hoc | |
| [1591/1930] Generating ../../tqperf/coreneuron_python/runs.hoc | |
| [1592/1930] Generating ../../tqperf/coreneuron_python/spike2file.hoc | |
| [1593/1930] Generating ../../tqperf/coreneuron_python/table.hoc | |
| [1594/1930] Generating ../../tqperf/coreneuron_python/spkplt.hoc | |
| [1595/1930] Generating ../../tqperf/coreneuron_python/test1.py | |
| [1596/1930] Generating ../../tqperf/coreneuron_python/tperf.hoc | |
| [1597/1930] Generating ../../tqperf/coreneuron_python/tperfnew.hoc | |
| [1598/1930] Building special[-core] for test group testcorenrn_bbcore | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876 | |
| cfiles = | |
| Mod files: "./Gfluct3.mod" "./hhderiv.mod" "./hhkin.mod" "./hhwatch.mod" "./nacum.mod" "./vecevent.mod" | |
| MODOBJS= ./Gfluct3.o ./hhderiv.o ./hhkin.o ./hhwatch.o ./nacum.o ./vecevent.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././Gfluct3.mod | |
| -> NMODL .././hhderiv.mod | |
| -> NMODL .././hhkin.mod | |
| Translating hhkin.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp | |
| Thread Safe | |
| Translating hhderiv.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp | |
| -> NMODL .././hhwatch.mod | |
| Translating Gfluct3.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp | |
| Thread Safe | |
| -> NMODL .././nacum.mod | |
| Thread Safe | |
| -> NMODL .././vecevent.mod | |
| Translating hhwatch.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/Gfluct3.cpp | |
| Translating nacum.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp | |
| Thread Safe | |
| Translating vecevent.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhderiv.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhkin.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/hhwatch.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/nacum.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/vecevent.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/b62f97c7d3f6d905c774d64e10128b3300792f8f757b926b965c058a4d6ee876/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1599/1930] Generating ../../testcorenrn_bbcore/neuron/common.hoc | |
| [1600/1930] Generating ../../testcorenrn_bbcore/neuron/defvar.hoc | |
| [1601/1930] Generating ../../testcorenrn_bbcore/neuron/testbbcore.hoc | |
| [1602/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/testbbcore.hoc | |
| [1603/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1604/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/common.hoc | |
| [1605/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online/defvar.hoc | |
| [1606/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1607/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_online_psolve_alternate/testbbcore.hoc | |
| [1608/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/testbbcore.hoc | |
| [1609/1930] Generating ../../testcorenrn_conc/neuron/common.hoc | |
| [1610/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/common.hoc | |
| [1611/1930] Generating ../../testcorenrn_bbcore/coreneuron_cpu_offline/defvar.hoc | |
| [1612/1930] Generating ../../testcorenrn_conc/neuron/defvar.hoc | |
| [1613/1930] Generating ../../testcorenrn_conc/neuron/testconc.hoc | |
| [1614/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_online/common.hoc | |
| [1615/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_online/defvar.hoc | |
| [1616/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_online/testconc.hoc | |
| [1617/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1618/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/testconc.hoc | |
| [1619/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1620/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/common.hoc | |
| [1621/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/defvar.hoc | |
| [1622/1930] Generating ../../testcorenrn_deriv/neuron/common.hoc | |
| [1623/1930] Generating ../../testcorenrn_conc/coreneuron_cpu_offline/testconc.hoc | |
| [1624/1930] Generating ../../testcorenrn_deriv/neuron/defvar.hoc | |
| [1625/1930] Generating ../../testcorenrn_deriv/neuron/testderiv.hoc | |
| [1626/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/common.hoc | |
| [1627/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/defvar.hoc | |
| [1628/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1629/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_online/testderiv.hoc | |
| [1630/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1631/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_online_psolve_alternate/testderiv.hoc | |
| [1632/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/common.hoc | |
| [1633/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/defvar.hoc | |
| [1634/1930] Generating ../../testcorenrn_gf/neuron/common.hoc | |
| [1635/1930] Generating ../../testcorenrn_deriv/coreneuron_cpu_offline/testderiv.hoc | |
| [1636/1930] Generating ../../testcorenrn_gf/neuron/defvar.hoc | |
| [1637/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_online/common.hoc | |
| [1638/1930] Generating ../../testcorenrn_gf/neuron/testgf.hoc | |
| [1639/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_online/defvar.hoc | |
| [1640/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_online/testgf.hoc | |
| [1641/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1642/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1643/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_online_psolve_alternate/testgf.hoc | |
| [1644/1930] Generating ../../testcorenrn_kin/neuron/common.hoc | |
| [1645/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/common.hoc | |
| [1646/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/defvar.hoc | |
| [1647/1930] Generating ../../testcorenrn_gf/coreneuron_cpu_offline/testgf.hoc | |
| [1648/1930] Generating ../../testcorenrn_kin/neuron/defvar.hoc | |
| [1649/1930] Generating ../../testcorenrn_kin/neuron/testkin.hoc | |
| [1650/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_online/common.hoc | |
| [1651/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_online/defvar.hoc | |
| [1652/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1653/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_online/testkin.hoc | |
| [1654/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1655/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/common.hoc | |
| [1656/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_online_psolve_alternate/testkin.hoc | |
| [1657/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/defvar.hoc | |
| [1658/1930] Generating ../../testcorenrn_kin/coreneuron_cpu_offline/testkin.hoc | |
| [1659/1930] Generating ../../testcorenrn_patstim/neuron/common.hoc | |
| [1660/1930] Generating ../../testcorenrn_patstim/neuron/defvar.hoc | |
| [1661/1930] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/testpatstim.hoc | |
| [1662/1930] Generating ../../testcorenrn_patstim/neuron/testpatstim.hoc | |
| [1663/1930] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/common.hoc | |
| [1664/1930] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline_saverestore/defvar.hoc | |
| [1665/1930] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/common.hoc | |
| [1666/1930] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/defvar.hoc | |
| [1667/1930] Generating ../../testcorenrn_vecplay/neuron/defvar.hoc | |
| [1668/1930] Generating ../../testcorenrn_patstim/coreneuron_cpu_offline/testpatstim.hoc | |
| [1669/1930] Generating ../../testcorenrn_vecplay/neuron/common.hoc | |
| [1670/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/common.hoc | |
| [1671/1930] Generating ../../testcorenrn_vecplay/neuron/testvecplay.hoc | |
| [1672/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/defvar.hoc | |
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| [1674/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online/testvecplay.hoc | |
| [1675/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1676/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_online_psolve_alternate/testvecplay.hoc | |
| [1677/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/defvar.hoc | |
| [1678/1930] Generating ../../testcorenrn_vecevent/neuron/common.hoc | |
| [1679/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/common.hoc | |
| [1680/1930] Generating ../../testcorenrn_vecplay/coreneuron_cpu_offline/testvecplay.hoc | |
| [1681/1930] Generating ../../testcorenrn_vecevent/neuron/testvecevent.hoc | |
| [1682/1930] Generating ../../testcorenrn_vecevent/neuron/defvar.hoc | |
| [1683/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/common.hoc | |
| [1684/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1685/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/defvar.hoc | |
| [1686/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online/testvecevent.hoc | |
| [1687/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1688/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/common.hoc | |
| [1689/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_online_psolve_alternate/testvecevent.hoc | |
| [1690/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/defvar.hoc | |
| [1691/1930] Generating ../../testcorenrn_watch/neuron/common.hoc | |
| [1692/1930] Generating ../../testcorenrn_vecevent/coreneuron_cpu_offline/testvecevent.hoc | |
| [1693/1930] Generating ../../testcorenrn_watch/neuron/defvar.hoc | |
| [1694/1930] Generating ../../testcorenrn_watch/neuron/testwatch.hoc | |
| [1695/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_online/common.hoc | |
| [1696/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_online/defvar.hoc | |
| [1697/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_online/testwatch.hoc | |
| [1698/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/defvar.hoc | |
| [1699/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/common.hoc | |
| [1700/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/testwatch.hoc | |
| [1701/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/defvar.hoc | |
| [1702/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_online_psolve_alternate/common.hoc | |
| [1703/1930] Generating ../../testcorenrn_watch/coreneuron_cpu_offline/testwatch.hoc | |
| [1704/1930] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/common.hoc | |
| [1705/1930] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/defvar.hoc | |
| [1706/1930] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/common.hoc | |
| [1707/1930] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect/testnetstimdirect.hoc | |
| [1708/1930] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/defvar.hoc | |
| [1709/1930] Generating ../../testcorenrn_netstimdirect/direct_netstimdirect_psolve_alternate/testnetstimdirect.hoc | |
| [1710/1930] Building special[-core] for test group coreneuron_modtests | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7 | |
| cfiles = | |
| Mod files: "./axial.mod" "./axial_pp.mod" "./bacur.mod" "./banocur.mod" "./fornetcon.mod" "./green.mod" "./invlfire.mod" "./natrans.mod" "./netmove.mod" "./noisychan.mod" "./red.mod" "./sample.mod" "./unitstest.mod" "./version_macros.mod" "./watchrange.mod" "./watchrange2.mod" | |
| MODOBJS= ./axial.o ./axial_pp.o ./bacur.o ./banocur.o ./fornetcon.o ./green.o ./invlfire.o ./natrans.o ./netmove.o ./noisychan.o ./red.o ./sample.o ./unitstest.o ./version_macros.o ./watchrange.o ./watchrange2.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
| [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
| [NMODL] [warning] :: SYMTAB :: w [Argument] in ForNetcon shadows <argument> definition in NetReceiveBlock | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././axial.mod | |
| -> NMODL .././axial_pp.mod | |
| -> NMODL .././bacur.mod | |
| Translating axial_pp.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial_pp.cpp | |
| Translating bacur.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/bacur.cpp | |
| INCLUDEing axial.inc | |
| Thread Safe | |
| Thread Safe | |
| Translating axial.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial.cpp | |
| INCLUDEing axial.inc | |
| Thread Safe | |
| -> NMODL .././banocur.mod | |
| -> NMODL .././fornetcon.mod | |
| -> NMODL .././green.mod | |
| Translating banocur.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/banocur.cpp | |
| Notice: This mechanism cannot be used with CVODE | |
| Thread Safe | |
| Translating fornetcon.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/fornetcon.cpp | |
| Thread Safe | |
| Translating green.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/green.cpp | |
| Warning: dt undefined. (declared within VERBATIM?) | |
| Thread Safe | |
| -> NMODL .././invlfire.mod | |
| -> NMODL .././natrans.mod | |
| -> NMODL .././netmove.mod | |
| Translating invlfire.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/invlfire.cpp | |
| Thread Safe | |
| Translating netmove.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/netmove.cpp | |
| Thread Safe | |
| -> NMODL .././noisychan.mod | |
| -> NMODL .././red.mod | |
| Translating natrans.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/natrans.cpp | |
| Thread Safe | |
| -> NMODL .././sample.mod | |
| Translating noisychan.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/noisychan.cpp | |
| Thread Safe | |
| Translating red.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/red.cpp | |
| Thread Safe | |
| -> NMODL .././unitstest.mod | |
| -> NMODL .././version_macros.mod | |
| Translating sample.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/sample.cpp | |
| Thread Safe | |
| -> NMODL .././watchrange.mod | |
| Translating version_macros.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/version_macros.cpp | |
| Thread Safe | |
| -> NMODL .././watchrange2.mod | |
| Translating unitstest.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/unitstest.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial.cpp | |
| Translating watchrange2.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange2.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/axial_pp.cpp | |
| Translating watchrange.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/bacur.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/banocur.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/fornetcon.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/green.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/invlfire.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/natrans.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/netmove.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/noisychan.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/red.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/sample.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/unitstest.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/version_macros.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/watchrange2.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/c35d2f235e0f3860fbecadf05ec8c2b6901bba2525195c69836276a4b5d88ca7/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1711/1930] Generating coreneuron_modtests/inputpresyn_py/test/coreneuron/test_inputpresyn.py | |
| [1712/1930] Generating coreneuron_modtests/fornetcon_py_cpu/test/coreneuron/test_fornetcon.py | |
| [1713/1930] Generating coreneuron_modtests/version_macros/test/pytest_coreneuron/test_version_macros.py | |
| [1714/1930] Generating coreneuron_modtests/direct_py_cpu/test/coreneuron/test_direct.py | |
| [1715/1930] Generating coreneuron_modtests/direct_hoc_cpu/test/coreneuron/test_direct.hoc | |
| [1716/1930] Generating coreneuron_modtests/spikes_file_mode_py_cpu/test/coreneuron/test_spikes.py | |
| [1717/1930] Generating coreneuron_modtests/spikes_py_cpu/test/coreneuron/test_spikes.py | |
| [1718/1930] Generating coreneuron_modtests/fast_imem_py_cpu/test/pytest_coreneuron/test_fast_imem.py | |
| [1719/1930] Generating coreneuron_modtests/datareturn_py_cpu/test/coreneuron/test_datareturn.py | |
| [1720/1930] Generating coreneuron_modtests/test_units_py_cpu/test/coreneuron/test_units.py | |
| [1721/1930] Generating coreneuron_modtests/test_netmove_py_cpu/test/coreneuron/test_netmove.py | |
| [1722/1930] Generating coreneuron_modtests/test_pointer_py_cpu/test/coreneuron/test_pointer.py | |
| [1723/1930] Generating coreneuron_modtests/test_watchrange_py_cpu/test/coreneuron/test_watchrange.py | |
| [1724/1930] Generating coreneuron_modtests/test_psolve_py_cpu/test/coreneuron/test_psolve.py | |
| [1725/1930] Generating coreneuron_modtests/test_ba_py_cpu/test/coreneuron/test_ba.py | |
| [1726/1930] Generating coreneuron_modtests/array_variable_transfer_run_mode_0_py_cpu/test/coreneuron/test_array_variables_transfer.py | |
| [1727/1930] Generating coreneuron_modtests/test_nmodlrandom_py_cpu/test/coreneuron/test_nmodlrandom.py | |
| [1728/1930] Generating coreneuron_modtests/test_natrans_py_cpu/test/gjtests/test_natrans.py | |
| [1729/1930] Generating coreneuron_modtests/test_nmodlrandom_syntax_py_cpu/test/coreneuron/test_nmodlrandom_syntax.py | |
| [1730/1930] Generating coreneuron_modtests/array_variable_transfer_run_mode_1_py_cpu/test/coreneuron/test_array_variables_transfer.py | |
| [1731/1930] Generating coreneuron_modtests/array_variable_transfer_file_mode_py_cpu/test/coreneuron/test_array_variables_transfer.py | |
| [1732/1930] Generating coreneuron_modtests/array_variable_transfer_run_mode_2_py_cpu/test/coreneuron/test_array_variables_transfer.py | |
| [1733/1930] Generating coreneuron_modtests/spikes_mpi_file_mode_py_cpu/test/coreneuron/test_spikes.py | |
| [1734/1930] Generating coreneuron_modtests/test_subworlds_py_cpu/test/coreneuron/test_subworlds.py | |
| [1735/1930] Building special[-core] for test group example_nmodl | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2 | |
| cfiles = | |
| Mod files: "./argpass.mod" "./cabpump.mod" "./cachan.mod" "./cacum.mod" "./cacur.mod" "./cadif.mod" "./cadifusl.mod" "./cagk.mod" "./cagkftab.mod" "./capmp.mod" "./expsynspine.mod" "./fh.mod" "./fit1.mod" "./gap.mod" "./hh1.mod" "./hhvect.mod" "./inatest.mod" "./ionleak.mod" "./nacum.mod" "./nacur.mod" "./nadifl.mod" "./nonlin.mod" "./obj_ex.mod" "./order.mod" "./passiv.mod" "./rchan.mod" "./stim1.mod" "./str.mod" "./syn1.mod" "./synpre.mod" "./trivial.mod" "./tstdarray.mod" "./tstextrn.mod" "./tstpnt1.mod" "./tstpnt2.mod" "./tstvec.mod" "./vclmp1.mod" "./vlag.mod" | |
| MODOBJS= ./argpass.o ./cabpump.o ./cachan.o ./cacum.o ./cacur.o ./cadif.o ./cadifusl.o ./cagk.o ./cagkftab.o ./capmp.o ./expsynspine.o ./fh.o ./fit1.o ./gap.o ./hh1.o ./hhvect.o ./inatest.o ./ionleak.o ./nacum.o ./nacur.o ./nadifl.o ./nonlin.o ./obj_ex.o ./order.o ./passiv.o ./rchan.o ./stim1.o ./str.o ./syn1.o ./synpre.o ./trivial.o ./tstdarray.o ./tstextrn.o ./tstpnt1.o ./tstpnt2.o ./tstvec.o ./vclmp1.o ./vlag.o | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././argpass.mod | |
| -> NMODL .././cabpump.mod | |
| -> NMODL .././cachan.mod | |
| Translating argpass.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> NMODL .././cacum.mod | |
| Translating cabpump.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp | |
| Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
| -> NMODL .././cacur.mod | |
| Translating cachan.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp | |
| Thread Safe | |
| -> NMODL .././cadif.mod | |
| Translating cacum.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp | |
| Thread Safe | |
| Translating cacur.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp | |
| Thread Safe | |
| -> NMODL .././cadifusl.mod | |
| -> NMODL .././cagk.mod | |
| Translating cadif.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp | |
| Thread Safe | |
| -> NMODL .././cagkftab.mod | |
| Translating cagk.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp | |
| Thread Safe | |
| -> NMODL .././capmp.mod | |
| Translating cadifusl.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp | |
| Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
| -> NMODL .././expsynspine.mod | |
| Translating cagkftab.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp | |
| Thread Safe | |
| -> NMODL .././fh.mod | |
| Translating capmp.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp | |
| NEURON's CVode method ignores conservation | |
| Thread Safe | |
| -> NMODL .././fit1.mod | |
| Translating expsynspine.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp | |
| Notice: LINEAR is not thread safe. | |
| Translating fh.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp | |
| INCLUDEing standard.inc | |
| Notice: Assignment to the GLOBAL variable, "inf", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "tau", is not thread safe | |
| -> NMODL .././gap.mod | |
| -> NMODL .././hh1.mod | |
| Translating fit1.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> NMODL .././hhvect.mod | |
| Translating gap.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| -> NMODL .././inatest.mod | |
| Translating hh1.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp | |
| Notice: This mechanism cannot be used with CVODE | |
| Notice: Assignment to the GLOBAL variable, "hexp", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "hinf", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "mexp", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "minf", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "nexp", is not thread safe | |
| Notice: Assignment to the GLOBAL variable, "ninf", is not thread safe | |
| Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON. | |
| Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON. | |
| Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON. | |
| -> NMODL .././ionleak.mod | |
| Translating hhvect.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp | |
| Notice: This mechanism cannot be used with CVODE | |
| Thread Safe | |
| Warning: Default 6.3 of PARAMETER celsius will be ignored and set by NEURON. | |
| Warning: Default -77.5 of PARAMETER ek will be ignored and set by NEURON. | |
| Warning: Default 50 of PARAMETER ena will be ignored and set by NEURON. | |
| -> NMODL .././nacum.mod | |
| Translating ionleak.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp | |
| Thread Safe | |
| -> NMODL .././nacur.mod | |
| Translating inatest.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp | |
| Thread Safe | |
| -> NMODL .././nadifl.mod | |
| Translating nacum.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp | |
| Thread Safe | |
| -> NMODL .././nonlin.mod | |
| Translating nadifl.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp | |
| Thread Safe | |
| -> NMODL .././obj_ex.mod | |
| -> NMODL .././order.mod | |
| Translating nacur.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp | |
| Thread Safe | |
| -> NMODL .././passiv.mod | |
| Translating obj_ex.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp | |
| Translating nonlin.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp | |
| Thread Safe | |
| Notice: NONLINEAR is not thread safe. | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| Translating order.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp | |
| -> NMODL .././rchan.mod | |
| Thread Safe | |
| -> NMODL .././stim1.mod | |
| -> NMODL .././str.mod | |
| Translating rchan.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp | |
| Notice: normrand is not thread safe | |
| Notice: This mechanism cannot be used with CVODE | |
| Translating passiv.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp | |
| Thread Safe | |
| Translating str.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> NMODL .././syn1.mod | |
| -> NMODL .././synpre.mod | |
| -> NMODL .././trivial.mod | |
| Translating stim1.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp | |
| Thread Safe | |
| -> NMODL .././tstdarray.mod | |
| Translating trivial.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp | |
| -> NMODL .././tstextrn.mod | |
| Translating synpre.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| Notice: VERBATIM blocks are not thread safe | |
| Notice: This mechanism cannot be used with CVODE | |
| -> NMODL .././tstpnt1.mod | |
| Translating syn1.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp | |
| Thread Safe | |
| -> NMODL .././tstpnt2.mod | |
| Translating tstdarray.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp | |
| Thread Safe | |
| Translating tstpnt1.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| -> NMODL .././tstvec.mod | |
| -> NMODL .././vclmp1.mod | |
| Translating tstextrn.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp | |
| Notice: Use of EXTERNAL is not thread safe. | |
| Translating tstpnt2.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp | |
| Notice: Use of POINTER is not thread safe. | |
| -> NMODL .././vlag.mod | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/argpass.cpp | |
| Translating tstvec.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cabpump.cpp | |
| Translating vclmp1.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp | |
| Notice: VERBATIM blocks are not thread safe | |
| Notice: This mechanism cannot be used with CVODE | |
| Notice: LINEAR is not thread safe. | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cachan.cpp | |
| Translating vlag.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacum.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cacur.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadif.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cadifusl.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagk.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/cagkftab.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/capmp.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/expsynspine.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fh.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/fit1.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/gap.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hh1.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/hhvect.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/inatest.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/ionleak.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacum.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nacur.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nadifl.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/nonlin.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/obj_ex.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/order.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/passiv.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/rchan.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/stim1.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/str.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/syn1.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/synpre.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/trivial.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstdarray.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstextrn.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt1.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstpnt2.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/tstvec.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vclmp1.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/vlag.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/263a5c542e063ee6760ce51af8be262e1c89db6e16b2211fb308c533e45334f2/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1736/1930] Generating example_nmodl/cadif_hoc/cadif.hoc | |
| [1737/1930] Generating example_nmodl/cabpump_hoc/cabpump.hoc | |
| [1738/1930] Generating example_nmodl/ca_ap_hoc/ca_ap.hoc | |
| [1739/1930] Generating example_nmodl/cachan_hoc/cachan.hoc | |
| [1740/1930] Generating example_nmodl/cadif_hoc/cadif.ses | |
| [1741/1930] Generating example_nmodl/cagk_hoc/cagk.hoc | |
| [1742/1930] Generating example_nmodl/cadifusl_hoc/cadifusl.hoc | |
| [1743/1930] Generating example_nmodl/cadifusl1_hoc/cadifusl1.hoc | |
| [1744/1930] Generating example_nmodl/cv_hoc/cv.hoc | |
| [1745/1930] Generating example_nmodl/fh_hoc/fh.hoc | |
| [1746/1930] Generating example_nmodl/hh1_hoc/hh1.hoc | |
| [1747/1930] Generating example_nmodl/cadifusl2_hoc/cadifusl2.hoc | |
| [1748/1930] Generating example_nmodl/capmp_hoc/capmp.hoc | |
| [1749/1930] Generating example_nmodl/fit1_hoc/fit1.hoc | |
| [1750/1930] Generating example_nmodl/gap_hoc/gap.hoc | |
| [1751/1930] Generating example_nmodl/nadifl1_hoc/nadifl1.hoc | |
| [1752/1930] Generating example_nmodl/hhvect_hoc/hhvect.hoc | |
| [1753/1930] Generating example_nmodl/nadifl3_hoc/nadifl3.ses | |
| [1754/1930] Generating example_nmodl/nacum_hoc/nacum.hoc | |
| [1755/1930] Generating example_nmodl/nadifl2_hoc/nadifl2.ses | |
| [1756/1930] Generating example_nmodl/nadifl1_hoc/nadifl1.ses | |
| [1757/1930] Generating example_nmodl/nadifl4_hoc/nadifl4.hoc | |
| [1758/1930] Generating example_nmodl/obj_ex_hoc/obj_ex.hoc | |
| [1759/1930] Generating example_nmodl/nadifl2_hoc/nadifl2.hoc | |
| [1760/1930] Generating example_nmodl/nadifl3_hoc/nadifl3.hoc | |
| [1761/1930] Generating example_nmodl/nadifl4_hoc/nadifl4.ses | |
| [1762/1930] Generating example_nmodl/order_hoc/order.hoc | |
| [1763/1930] Generating example_nmodl/passiv_hoc/passiv.hoc | |
| [1764/1930] Generating example_nmodl/stim1_hoc/stim1.hoc | |
| [1765/1930] Generating example_nmodl/syn1_hoc/syn1.hoc | |
| [1766/1930] Generating example_nmodl/synpre_hoc/synpre.hoc | |
| [1767/1930] Generating example_nmodl/tstextrn_hoc/tstextrn.hoc | |
| [1768/1930] Generating example_nmodl/tstpnt2_hoc/tstpnt2.hoc | |
| [1769/1930] Generating example_nmodl/tstpnt1_hoc/tstpnt1.hoc | |
| [1770/1930] Generating example_nmodl/tstvec_hoc/tstvec.hoc | |
| [1771/1930] Generating example_nmodl/expsynspine_py/expsynspine.py | |
| [1772/1930] Generating example_nmodl/cagkftab_py/cagkftab.py | |
| [1773/1930] Generating example_nmodl/nonlin_py/nonlin.py | |
| [1774/1930] Generating example_nmodl/expsynspine_py/expsynspine.ses | |
| [1775/1930] Generating example_nmodl/tstpnt2_py/tstpnt2.py | |
| [1776/1930] Generating example_nmodl/tstpnt1_py/tstpnt1.py | |
| [1777/1930] Generating example_nmodl/vlag_py/vlag.py | |
| [1778/1930] Building special[-core] for test group reduced_dentate | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead | |
| cfiles = | |
| Mod files: "./Aradi_Ca.mod" "./Aradi_CadepK.mod" "./Aradi_KA.mod" "./Aradi_KDRf.mod" "./Aradi_KDRs.mod" "./Aradi_Na.mod" "./CaBK.mod" "./DGC_M.mod" "./DGC_UK.mod" "./DGC_sAHP.mod" "./Gfluct3.mod" "./LcaMig.mod" "./SH_KIn.mod" "./SH_na8st.mod" "./bgka.mod" "./ccanl.mod" "./ggap.mod" "./gskch.mod" "./holdingi.mod" "./hyperde3.mod" "./ichan2.mod" "./iconc_Ca.mod" "./kcaPR.mod" "./na3n.mod" "./nca.mod" "./spines.mod" "./tca.mod" "./vecevent.mod" | |
| MODOBJS= ./Aradi_Ca.o ./Aradi_CadepK.o ./Aradi_KA.o ./Aradi_KDRf.o ./Aradi_KDRs.o ./Aradi_Na.o ./CaBK.o ./DGC_M.o ./DGC_UK.o ./DGC_sAHP.o ./Gfluct3.o ./LcaMig.o ./SH_KIn.o ./SH_na8st.o ./bgka.o ./ccanl.o ./ggap.o ./gskch.o ./holdingi.o ./hyperde3.o ./ichan2.o ./iconc_Ca.o ./kcaPR.o ./na3n.o ./nca.o ./spines.o ./tca.o ./vecevent.o | |
| [INFO] Running: make -j4 -f /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/share/coreneuron/nrnivmodl_core_makefile ROOT=/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build MODS_PATH=arm64/corenrn/mod2c BUILD_TYPE=SHARED NRN_PRCELLSTATE=0 | |
| Default NMODL flags: | |
| diff: arm64/corenrn/mod2c/_mod_func.cpp: No such file or directory | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: k [Argument] in exp1 shadows <ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: Can not inline function call to mynormrand | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in h2 shadows <assigned_definition read_ion> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: cai [Argument] in rate shadows <assigned_definition> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: t [Argument] in init_sequence shadows <extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: CVode solver of icur in 64.20-30 replaced with cnexp solver | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| [NMODL] [warning] :: SYMTAB :: celsius [Argument] in KTF shadows <assigned_definition extern_neuron_var> definition in NMODL_GLOBAL | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => Binary creating arm64/special-core | |
| [INFO] MOD files built successfully for CoreNEURON | |
| -> Compiling mod_func.cpp | |
| -> NMODL .././Aradi_Ca.mod | |
| -> NMODL .././Aradi_CadepK.mod | |
| -> NMODL .././Aradi_KA.mod | |
| Translating Aradi_KA.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp | |
| Translating Aradi_CadepK.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp | |
| Thread Safe | |
| Thread Safe | |
| Translating Aradi_Ca.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp | |
| Thread Safe | |
| -> NMODL .././Aradi_KDRf.mod | |
| -> NMODL .././Aradi_KDRs.mod | |
| -> NMODL .././Aradi_Na.mod | |
| Translating Aradi_KDRf.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp | |
| Thread Safe | |
| Translating Aradi_KDRs.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp | |
| Translating Aradi_Na.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp | |
| Thread Safe | |
| Thread Safe | |
| -> NMODL .././CaBK.mod | |
| -> NMODL .././DGC_M.mod | |
| -> NMODL .././DGC_UK.mod | |
| Translating CaBK.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp | |
| Thread Safe | |
| Translating DGC_M.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp | |
| Thread Safe | |
| Translating DGC_UK.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp | |
| -> NMODL .././DGC_sAHP.mod | |
| Thread Safe | |
| -> NMODL .././Gfluct3.mod | |
| -> NMODL .././LcaMig.mod | |
| Translating DGC_sAHP.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp | |
| Thread Safe | |
| Translating Gfluct3.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp | |
| Thread Safe | |
| Translating LcaMig.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp | |
| -> NMODL .././SH_KIn.mod | |
| Thread Safe | |
| -> NMODL .././SH_na8st.mod | |
| -> NMODL .././bgka.mod | |
| Translating SH_KIn.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp | |
| Thread Safe | |
| Translating SH_na8st.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp | |
| NEURON's CVode method ignores conservation | |
| Thread Safe | |
| -> NMODL .././ccanl.mod | |
| Translating bgka.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp | |
| Thread Safe | |
| -> NMODL .././ggap.mod | |
| -> NMODL .././gskch.mod | |
| Translating ccanl.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp | |
| Thread Safe | |
| Translating ggap.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp | |
| Thread Safe | |
| -> NMODL .././holdingi.mod | |
| Translating gskch.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp | |
| Thread Safe | |
| -> NMODL .././hyperde3.mod | |
| -> NMODL .././ichan2.mod | |
| -> NMODL .././iconc_Ca.mod | |
| Translating holdingi.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp | |
| Thread Safe | |
| Translating hyperde3.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp | |
| Thread Safe | |
| -> NMODL .././kcaPR.mod | |
| Translating ichan2.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp | |
| Thread Safe | |
| -> NMODL .././na3n.mod | |
| -> NMODL .././nca.mod | |
| Translating iconc_Ca.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp | |
| Thread Safe | |
| -> NMODL .././spines.mod | |
| Translating kcaPR.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp | |
| Thread Safe | |
| Translating na3n.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp | |
| Thread Safe | |
| Translating nca.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp | |
| Thread Safe | |
| -> NMODL .././tca.mod | |
| -> NMODL .././vecevent.mod | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Ca.cpp | |
| Translating spines.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp | |
| Thread Safe | |
| Translating tca.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp | |
| Thread Safe | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_CadepK.cpp | |
| Translating vecevent.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp | |
| Thread Safe | |
| Notice: ARTIFICIAL_CELL is a synonym for POINT_PROCESS which hints that it | |
| only affects and is affected by discrete events. As such it is not | |
| located in a section and is not associated with an integrator | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KA.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRf.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_KDRs.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Aradi_Na.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/CaBK.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_M.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_UK.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/DGC_sAHP.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/Gfluct3.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/LcaMig.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_KIn.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/SH_na8st.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/bgka.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ccanl.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ggap.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/gskch.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/holdingi.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/hyperde3.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/ichan2.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/iconc_Ca.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/kcaPR.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/na3n.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/nca.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/spines.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/tca.cpp | |
| -> Compiling /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/vecevent.cpp | |
| => LINKING shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => LINKING executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/test/nrnivmodl/53c432f7080fe7b786e16536f2d17f96d387425d200c645a6b4cec93b5edfead/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| [1779/1930] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_points.dat | |
| [1780/1930] Generating ../../reduced_dentate/neuron/dat/DGC_dendrite_topology.dat | |
| [1781/1930] Generating ../../reduced_dentate/neuron/dat/DGC_spine_density.dat | |
| [1782/1930] Generating ../../reduced_dentate/neuron/commonutils.py | |
| [1783/1930] Generating ../../reduced_dentate/neuron/datasets/Control/AAC.dat | |
| [1784/1930] Generating ../../reduced_dentate/neuron/dat/soma_st8.dat | |
| [1785/1930] Generating ../../reduced_dentate/neuron/dat/axon_st8.dat | |
| [1786/1930] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoMC.dat | |
| [1787/1930] Generating ../../reduced_dentate/neuron/datasets/Control/AACstim.dat | |
| [1788/1930] Generating ../../reduced_dentate/neuron/datasets/Control/AACtoGC.dat | |
| [1789/1930] Generating ../../reduced_dentate/neuron/datasets/Control/BC.dat | |
| [1790/1930] Generating ../../reduced_dentate/neuron/datasets/Control/BCstim.dat | |
| [1791/1930] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoBC.dat | |
| [1792/1930] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoGC.dat | |
| [1793/1930] Generating ../../reduced_dentate/neuron/datasets/Control/BCtoMC.dat | |
| [1794/1930] Generating ../../reduced_dentate/neuron/datasets/Control/GC.dat | |
| [1795/1930] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoMC.dat | |
| [1796/1930] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoAAC.dat | |
| [1797/1930] Generating ../../reduced_dentate/neuron/datasets/Control/GCtoBC.dat | |
| [1798/1930] Generating ../../reduced_dentate/neuron/datasets/Control/HC.dat | |
| [1799/1930] Generating ../../reduced_dentate/neuron/datasets/Control/HCstim.dat | |
| [1800/1930] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoHC.dat | |
| [1801/1930] Generating ../../reduced_dentate/neuron/datasets/Control/GCstim.dat | |
| [1802/1930] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoMC.dat | |
| [1803/1930] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoNGFC.dat | |
| [1804/1930] Generating ../../reduced_dentate/neuron/datasets/Control/HCtoGC.dat | |
| [1805/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoBC.dat | |
| [1806/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MC.dat | |
| [1807/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MCstim.dat | |
| [1808/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoAAC.dat | |
| [1809/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoGC.dat | |
| [1810/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoHC.dat | |
| [1811/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MCtoMC.dat | |
| [1812/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MPP.dat | |
| [1813/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MPP/MPPspiketrain.dat | |
| [1814/1930] Generating ../../reduced_dentate/neuron/datasets/Control/MPPtoGC.dat | |
| [1815/1930] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCstim.dat | |
| [1816/1930] Generating ../../reduced_dentate/neuron/datasets/Control/NGFC.dat | |
| [1817/1930] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoBC.dat | |
| [1818/1930] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoAAC.dat | |
| [1819/1930] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoGC.dat | |
| [1820/1930] Generating ../../reduced_dentate/neuron/datasets/Control/gjNGFCtoNGFC.dat | |
| [1821/1930] Generating ../../reduced_dentate/neuron/datasets/Control/NGFCtoNGFC.dat | |
| [1822/1930] Generating ../../reduced_dentate/neuron/datasets/Control/connectivity.dat | |
| [1823/1930] Generating ../../reduced_dentate/neuron/datasets/Control/celltypes.dat | |
| [1824/1930] Generating ../../reduced_dentate/neuron/datasets/Control/gjHCtoHC.dat | |
| [1825/1930] Generating ../../reduced_dentate/neuron/datasets/Control/gapjunctions.dat | |
| [1826/1930] Generating ../../reduced_dentate/neuron/datasets/Control/gjBCtoBC.dat | |
| [1827/1930] Generating ../../reduced_dentate/neuron/datasets/Control/syncomp.dat | |
| [1828/1930] Generating ../../reduced_dentate/neuron/datasets/Control/stim.dat | |
| [1829/1930] Generating ../../reduced_dentate/neuron/datasets/Control/syndecay.dat | |
| [1830/1930] Generating ../../reduced_dentate/neuron/datasets/Control/synrise.dat | |
| [1831/1930] Generating ../../reduced_dentate/neuron/datasets/Control/syndend.dat | |
| [1832/1930] Generating ../../reduced_dentate/neuron/datasets/Control/synerev.dat | |
| [1833/1930] Generating ../../reduced_dentate/neuron/lib.hoc | |
| [1834/1930] Generating ../../reduced_dentate/neuron/main.hoc | |
| [1835/1930] Generating ../../reduced_dentate/neuron/datasets/Control/synweight.dat | |
| [1836/1930] Generating ../../reduced_dentate/neuron/parameters/Control.hoc | |
| [1837/1930] Generating ../../reduced_dentate/neuron/run.hoc | |
| [1838/1930] Generating ../../reduced_dentate/neuron/templates/AxoAxonicCell.hoc | |
| [1839/1930] Generating ../../reduced_dentate/neuron/templates/DGC.hoc | |
| [1840/1930] Generating ../../reduced_dentate/neuron/templates/DGC_Morphology_from_file_na8st.hoc | |
| [1841/1930] Generating ../../reduced_dentate/neuron/templates/DGC_Biophysics_passive_na8st.hoc | |
| [1842/1930] Generating ../../reduced_dentate/neuron/templates/DGC_Synapses.hoc | |
| [1843/1930] Generating ../../reduced_dentate/neuron/templates/HICAPCell.hoc | |
| [1844/1930] Generating ../../reduced_dentate/neuron/templates/BasketCell.hoc | |
| [1845/1930] Generating ../../reduced_dentate/neuron/templates/Dict.hoc | |
| [1846/1930] Generating ../../reduced_dentate/neuron/templates/DGC_Parameters_passive_na8st.hoc | |
| [1847/1930] Generating ../../reduced_dentate/neuron/templates/MPPCell.hoc | |
| [1848/1930] Generating ../../reduced_dentate/neuron/templates/MossyCell.hoc | |
| [1849/1930] Generating ../../reduced_dentate/neuron/templates/Value.hoc | |
| [1850/1930] Generating ../../reduced_dentate/neuron/templates/HIPPCell.hoc | |
| [1851/1930] Generating ../../reduced_dentate/neuron/templates/NGFCell.hoc | |
| [1852/1930] Generating ../../reduced_dentate/neuron/templates/ranstream.hoc | |
| [1853/1930] Generating ../../reduced_dentate/neuron/templates/StimCell.hoc | |
| [1854/1930] Generating ../../reduced_dentate/neuron/templates/defvar.hoc | |
| [1855/1930] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_topology.dat | |
| [1856/1930] Generating ../../reduced_dentate/coreneuron_cpu/commonutils.py | |
| [1857/1930] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_dendrite_points.dat | |
| [1858/1930] Generating ../../reduced_dentate/coreneuron_cpu/dat/axon_st8.dat | |
| [1859/1930] Generating ../../reduced_dentate/coreneuron_cpu/dat/DGC_spine_density.dat | |
| [1860/1930] Generating ../../reduced_dentate/coreneuron_cpu/dat/soma_st8.dat | |
| [1861/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACstim.dat | |
| [1862/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AAC.dat | |
| [1863/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BC.dat | |
| [1864/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoGC.dat | |
| [1865/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoMC.dat | |
| [1866/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCstim.dat | |
| [1867/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoBC.dat | |
| [1868/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/BCtoGC.dat | |
| [1869/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GC.dat | |
| [1870/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCstim.dat | |
| [1871/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/AACtoMC.dat | |
| [1872/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoBC.dat | |
| [1873/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoAAC.dat | |
| [1874/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HC.dat | |
| [1875/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/GCtoMC.dat | |
| [1876/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCstim.dat | |
| [1877/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoMC.dat | |
| [1878/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoNGFC.dat | |
| [1879/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoHC.dat | |
| [1880/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MC.dat | |
| [1881/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoAAC.dat | |
| [1882/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/HCtoGC.dat | |
| [1883/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCstim.dat | |
| [1884/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoGC.dat | |
| [1885/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoHC.dat | |
| [1886/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoMC.dat | |
| [1887/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MCtoBC.dat | |
| [1888/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP.dat | |
| [1889/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPP/MPPspiketrain.dat | |
| [1890/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/MPPtoGC.dat | |
| [1891/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFC.dat | |
| [1892/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoAAC.dat | |
| [1893/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCstim.dat | |
| [1894/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoBC.dat | |
| [1895/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoNGFC.dat | |
| [1896/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/NGFCtoGC.dat | |
| [1897/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/connectivity.dat | |
| [1898/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjHCtoHC.dat | |
| [1899/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjNGFCtoNGFC.dat | |
| [1900/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/celltypes.dat | |
| [1901/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gapjunctions.dat | |
| [1902/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/gjBCtoBC.dat | |
| [1903/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/stim.dat | |
| [1904/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syncomp.dat | |
| [1905/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndecay.dat | |
| [1906/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synerev.dat | |
| [1907/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/syndend.dat | |
| [1908/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synrise.dat | |
| [1909/1930] Generating ../../reduced_dentate/coreneuron_cpu/datasets/Control/synweight.dat | |
| [1910/1930] Generating ../../reduced_dentate/coreneuron_cpu/lib.hoc | |
| [1911/1930] Generating ../../reduced_dentate/coreneuron_cpu/run.hoc | |
| [1912/1930] Generating ../../reduced_dentate/coreneuron_cpu/main.hoc | |
| [1913/1930] Generating ../../reduced_dentate/coreneuron_cpu/parameters/Control.hoc | |
| [1914/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/AxoAxonicCell.hoc | |
| [1915/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Biophysics_passive_na8st.hoc | |
| [1916/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC.hoc | |
| [1917/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Morphology_from_file_na8st.hoc | |
| [1918/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/Dict.hoc | |
| [1919/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/BasketCell.hoc | |
| [1920/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Parameters_passive_na8st.hoc | |
| [1921/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/HICAPCell.hoc | |
| [1922/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/HIPPCell.hoc | |
| [1923/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/DGC_Synapses.hoc | |
| [1924/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/MPPCell.hoc | |
| [1925/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/NGFCell.hoc | |
| [1926/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/MossyCell.hoc | |
| [1927/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/StimCell.hoc | |
| [1928/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/defvar.hoc | |
| [1929/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/Value.hoc | |
| [1930/1930] Generating ../../reduced_dentate/coreneuron_cpu/templates/ranstream.hoc | |
| [32;1m$ ccache -vs 2>/dev/null[0;m | |
| Cache directory: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/ccache | |
| Config file: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/ccache/ccache.conf | |
| System config file: /opt/homebrew/Cellar/ccache/4.9/etc/ccache.conf | |
| Stats updated: Thu Jul 4 14:26:14 2024 | |
| Cacheable calls: 627 / 627 (100.0%) | |
| Hits: 2 / 627 ( 0.32%) | |
| Direct: 1 / 2 (50.00%) | |
| Preprocessed: 1 / 2 (50.00%) | |
| Misses: 625 / 627 (99.68%) | |
| Successful lookups: | |
| Direct: 1 / 627 ( 0.16%) | |
| Preprocessed: 1 / 626 ( 0.16%) | |
| Local storage: | |
| Cache size (GiB): 1.1 / 5.0 (21.88%) | |
| Files: 11860 | |
| Hits: 2 / 627 ( 0.32%) | |
| Misses: 625 / 627 (99.68%) | |
| Reads: 1254 | |
| Writes: 1186 | |
| [32;1m$ echo $'[install]\nprefix='>src/nrnpython/setup.cfg[0;m | |
| [32;1m$ cat src/nrnpython/setup.cfg[0;m | |
| [install] | |
| prefix= | |
| [32;1m$ ctest --output-on-failure[0;m | |
| Test project /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build | |
| Start 241: external_ringtest::coreneuron_cpu_mpi_offline::preparation | |
| Start 251: testcorenrn_bbcore::coreneuron_cpu_offline::preparation | |
| 1/304 Test #251: testcorenrn_bbcore::coreneuron_cpu_offline::preparation .................. Passed 1.48 sec | |
| Start 257: testcorenrn_conc::coreneuron_cpu_offline::preparation | |
| 2/304 Test #257: testcorenrn_conc::coreneuron_cpu_offline::preparation .................... Passed 0.33 sec | |
| Start 263: testcorenrn_deriv::coreneuron_cpu_offline::preparation | |
| 3/304 Test #263: testcorenrn_deriv::coreneuron_cpu_offline::preparation ................... Passed 0.31 sec | |
| Start 275: testcorenrn_kin::coreneuron_cpu_offline::preparation | |
| 4/304 Test #241: external_ringtest::coreneuron_cpu_mpi_offline::preparation ............... Passed 2.17 sec | |
| Start 269: testcorenrn_gf::coreneuron_cpu_offline::preparation | |
| 5/304 Test #275: testcorenrn_kin::coreneuron_cpu_offline::preparation ..................... Passed 0.29 sec | |
| Start 159: pyinit::nrniv_py3.10_python_check_sys_path::preparation | |
| 6/304 Test #159: pyinit::nrniv_py3.10_python_check_sys_path::preparation .................. Passed 0.03 sec | |
| Start 161: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation | |
| 7/304 Test #161: pyinit::nrniv_py3.10_nrnpython_check_sys_path::preparation ............... Passed 0.03 sec | |
| Start 163: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation | |
| 8/304 Test #163: pyinit::nrniv_py3.10_python_check_sys_prefix::preparation ................ Passed 0.02 sec | |
| Start 165: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation | |
| 9/304 Test #269: testcorenrn_gf::coreneuron_cpu_offline::preparation ...................... Passed 0.34 sec | |
| Start 280: testcorenrn_patstim::coreneuron_cpu_offline::preparation | |
| 10/304 Test #165: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix::preparation ............. Passed 0.02 sec | |
| Start 167: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation | |
| 11/304 Test #167: pyinit::nrniv_py3.10_python_check_sys_exec_prefix::preparation ........... Passed 0.03 sec | |
| Start 169: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation | |
| 12/304 Test #169: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix::preparation ........ Passed 0.02 sec | |
| Start 171: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation | |
| 13/304 Test #171: pyinit::nrniv_py3.10_python_check_sys_base_prefix::preparation ........... Passed 0.03 sec | |
| Start 173: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation | |
| 14/304 Test #173: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix::preparation ........ Passed 0.03 sec | |
| Start 175: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation | |
| 15/304 Test #175: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix::preparation ...... Passed 0.03 sec | |
| Start 177: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation | |
| 16/304 Test #177: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix::preparation ... Passed 0.03 sec | |
| Start 179: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation | |
| 17/304 Test #179: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding::preparation ....... Passed 0.03 sec | |
| Start 181: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation | |
| 18/304 Test #181: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding::preparation .... Passed 0.03 sec | |
| Start 183: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation | |
| 19/304 Test #183: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding::preparation ........ Passed 0.03 sec | |
| Start 185: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation | |
| 20/304 Test #185: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding::preparation ..... Passed 0.03 sec | |
| Start 187: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation | |
| 21/304 Test #187: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding::preparation ....... Passed 0.03 sec | |
| Start 189: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation | |
| 22/304 Test #280: testcorenrn_patstim::coreneuron_cpu_offline::preparation ................. Passed 0.36 sec | |
| Start 286: testcorenrn_vecplay::coreneuron_cpu_offline::preparation | |
| 23/304 Test #189: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding::preparation .... Passed 0.03 sec | |
| Start 195: pyinit::nrniv_pydef_python_check_sys_path::preparation | |
| 24/304 Test #195: pyinit::nrniv_pydef_python_check_sys_path::preparation ................... Passed 0.03 sec | |
| Start 197: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation | |
| 25/304 Test #197: pyinit::nrniv_pydef_nrnpython_check_sys_path::preparation ................ Passed 0.02 sec | |
| Start 199: pyinit::nrniv_pydef_python_check_sys_prefix::preparation | |
| 26/304 Test #199: pyinit::nrniv_pydef_python_check_sys_prefix::preparation ................. Passed 0.03 sec | |
| Start 201: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation | |
| 27/304 Test #201: pyinit::nrniv_pydef_nrnpython_check_sys_prefix::preparation .............. Passed 0.03 sec | |
| Start 203: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation | |
| 28/304 Test #203: pyinit::nrniv_pydef_python_check_sys_exec_prefix::preparation ............ Passed 0.04 sec | |
| Start 205: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation | |
| 29/304 Test #205: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix::preparation ......... Passed 0.03 sec | |
| Start 207: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation | |
| 30/304 Test #207: pyinit::nrniv_pydef_python_check_sys_base_prefix::preparation ............ Passed 0.03 sec | |
| Start 209: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation | |
| 31/304 Test #209: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix::preparation ......... Passed 0.03 sec | |
| Start 211: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation | |
| 32/304 Test #211: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix::preparation ....... Passed 0.03 sec | |
| Start 213: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation | |
| 33/304 Test #213: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix::preparation .... Passed 0.03 sec | |
| Start 215: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation | |
| 34/304 Test #286: testcorenrn_vecplay::coreneuron_cpu_offline::preparation ................. Passed 0.33 sec | |
| Start 298: testcorenrn_watch::coreneuron_cpu_offline::preparation | |
| 35/304 Test #215: pyinit::nrniv_pydef_python_check_sys_stderr.encoding::preparation ........ Passed 0.02 sec | |
| Start 217: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation | |
| 36/304 Test #217: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding::preparation ..... Passed 0.03 sec | |
| Start 219: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation | |
| 37/304 Test #219: pyinit::nrniv_pydef_python_check_sys_stdin.encoding::preparation ......... Passed 0.02 sec | |
| Start 221: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation | |
| 38/304 Test #221: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding::preparation ...... Passed 0.03 sec | |
| Start 223: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation | |
| 39/304 Test #223: pyinit::nrniv_pydef_python_check_sys_stdout.encoding::preparation ........ Passed 0.04 sec | |
| Start 225: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation | |
| 40/304 Test #225: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding::preparation ..... Passed 0.03 sec | |
| Start 233: external_ringtest::neuron | |
| 41/304 Test #298: testcorenrn_watch::coreneuron_cpu_offline::preparation ................... Passed 0.31 sec | |
| Start 234: external_ringtest::neuron_mpi | |
| 42/304 Test #234: external_ringtest::neuron_mpi ............................................ Passed 12.11 sec | |
| Start 235: external_ringtest::neuron_mpi_python | |
| 43/304 Test #233: external_ringtest::neuron ................................................ Passed 22.38 sec | |
| Start 247: testcorenrn_bbcore::neuron | |
| 44/304 Test #247: testcorenrn_bbcore::neuron ............................................... Passed 0.36 sec | |
| Start 248: testcorenrn_bbcore::coreneuron_cpu_online | |
| 45/304 Test #248: testcorenrn_bbcore::coreneuron_cpu_online ................................ Passed 0.63 sec | |
| Start 249: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate | |
| 46/304 Test #235: external_ringtest::neuron_mpi_python ..................................... Passed 11.99 sec | |
| Start 237: external_ringtest::coreneuron_cpu_mpi_offline_saverestore | |
| 47/304 Test #249: testcorenrn_bbcore::coreneuron_cpu_online_psolve_alternate ............... Passed 0.91 sec | |
| Start 250: testcorenrn_bbcore::coreneuron_cpu_offline | |
| 48/304 Test #250: testcorenrn_bbcore::coreneuron_cpu_offline ............................... Passed 0.40 sec | |
| Start 253: testcorenrn_conc::neuron | |
| 49/304 Test #253: testcorenrn_conc::neuron ................................................. Passed 0.39 sec | |
| Start 254: testcorenrn_conc::coreneuron_cpu_online | |
| 50/304 Test #254: testcorenrn_conc::coreneuron_cpu_online .................................. Passed 0.66 sec | |
| Start 255: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate | |
| 51/304 Test #255: testcorenrn_conc::coreneuron_cpu_online_psolve_alternate ................. Passed 0.82 sec | |
| Start 256: testcorenrn_conc::coreneuron_cpu_offline | |
| 52/304 Test #256: testcorenrn_conc::coreneuron_cpu_offline ................................. Passed 0.27 sec | |
| Start 259: testcorenrn_deriv::neuron | |
| 53/304 Test #237: external_ringtest::coreneuron_cpu_mpi_offline_saverestore ................ Passed 2.89 sec | |
| Start 238: external_ringtest::coreneuron_cpu_mpi | |
| 54/304 Test #259: testcorenrn_deriv::neuron ................................................ Passed 0.34 sec | |
| Start 260: testcorenrn_deriv::coreneuron_cpu_online | |
| 55/304 Test #260: testcorenrn_deriv::coreneuron_cpu_online ................................. Passed 0.98 sec | |
| Start 261: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate | |
| 56/304 Test #261: testcorenrn_deriv::coreneuron_cpu_online_psolve_alternate ................ Passed 0.82 sec | |
| Start 262: testcorenrn_deriv::coreneuron_cpu_offline | |
| 57/304 Test #238: external_ringtest::coreneuron_cpu_mpi .................................... Passed 2.10 sec | |
| Start 239: external_ringtest::coreneuron_cpu_mpi_python | |
| 58/304 Test #262: testcorenrn_deriv::coreneuron_cpu_offline ................................ Passed 0.29 sec | |
| Start 271: testcorenrn_kin::neuron | |
| 59/304 Test #271: testcorenrn_kin::neuron .................................................. Passed 0.62 sec | |
| Start 272: testcorenrn_kin::coreneuron_cpu_online | |
| 60/304 Test #272: testcorenrn_kin::coreneuron_cpu_online ................................... Passed 0.84 sec | |
| Start 273: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate | |
| 61/304 Test #273: testcorenrn_kin::coreneuron_cpu_online_psolve_alternate .................. Passed 1.13 sec | |
| Start 274: testcorenrn_kin::coreneuron_cpu_offline | |
| 62/304 Test #239: external_ringtest::coreneuron_cpu_mpi_python ............................. Passed 2.73 sec | |
| Start 240: external_ringtest::coreneuron_cpu_mpi_offline | |
| 63/304 Test #274: testcorenrn_kin::coreneuron_cpu_offline .................................. Passed 0.29 sec | |
| Start 1: cmd_interface_test | |
| 64/304 Test #1: cmd_interface_test ....................................................... Passed 0.41 sec | |
| Start 2: interleave_info_constructor_test | |
| 65/304 Test #2: interleave_info_constructor_test ......................................... Passed 0.25 sec | |
| Start 3: alignment_test | |
| 66/304 Test #3: alignment_test ........................................................... Passed 0.25 sec | |
| Start 4: queuing_test | |
| 67/304 Test #240: external_ringtest::coreneuron_cpu_mpi_offline ............................ Passed 1.25 sec | |
| Start 244: external_ringtest::coreneuron_mpi_registermapping_directmode | |
| 68/304 Test #4: queuing_test ............................................................. Passed 0.29 sec | |
| Start 5: test-solver | |
| 69/304 Test #5: test-solver .............................................................. Passed 0.58 sec | |
| Start 6: random_test | |
| 70/304 Test #6: random_test .............................................................. Passed 0.26 sec | |
| Start 7: lfp_test | |
| 71/304 Test #7: lfp_test ................................................................. Passed 0.41 sec | |
| Start 8: unit_tests::testneuron | |
| 72/304 Test #8: unit_tests::testneuron ................................................... Passed 0.35 sec | |
| Start 9: unit_tests::testneuron_soa_erase_calls_terminate | |
| 73/304 Test #9: unit_tests::testneuron_soa_erase_calls_terminate ......................... Passed 0.13 sec | |
| Start 10: ringtest | |
| 74/304 Test #244: external_ringtest::coreneuron_mpi_registermapping_directmode ............. Passed 2.65 sec | |
| Start 245: external_ringtest::coreneuron_mpi_registermapping_filemode | |
| 75/304 Test #10: ringtest ................................................................. Passed 0.96 sec | |
| Start 11: connect_dend | |
| 76/304 Test #11: connect_dend ............................................................. Passed 0.33 sec | |
| Start 12: mpi_init::nrniv_mpiopt | |
| 77/304 Test #12: mpi_init::nrniv_mpiopt ................................................... Passed 0.29 sec | |
| Start 13: mpi_init::nrniv_nrnmpi_init | |
| 78/304 Test #13: mpi_init::nrniv_nrnmpi_init .............................................. Passed 0.33 sec | |
| Start 14: mpi_init::python_nrnmpi_init | |
| 79/304 Test #14: mpi_init::python_nrnmpi_init ............................................. Passed 0.88 sec | |
| Start 15: mpi_init::python_mpienv | |
| 80/304 Test #245: external_ringtest::coreneuron_mpi_registermapping_filemode ............... Passed 2.88 sec | |
| Start 265: testcorenrn_gf::neuron | |
| 81/304 Test #15: mpi_init::python_mpienv .................................................. Passed 0.92 sec | |
| Start 16: mpi_init::nrniv_mpiexec_mpiopt | |
| 82/304 Test #16: mpi_init::nrniv_mpiexec_mpiopt ........................................... Passed 0.28 sec | |
| Start 17: mpi_init::nrniv_mpiexec_nrnmpi_init | |
| 83/304 Test #17: mpi_init::nrniv_mpiexec_nrnmpi_init ...................................... Passed 0.29 sec | |
| Start 18: mpi_init::python_mpiexec_nrnmpi_init | |
| 84/304 Test #18: mpi_init::python_mpiexec_nrnmpi_init ..................................... Passed 1.10 sec | |
| Start 19: mpi_init::python_mpiexec_mpienv | |
| 85/304 Test #19: mpi_init::python_mpiexec_mpienv .......................................... Passed 0.91 sec | |
| Start 20: unit_tests::python_unit_tests | |
| 86/304 Test #265: testcorenrn_gf::neuron ................................................... Passed 3.08 sec | |
| Start 266: testcorenrn_gf::coreneuron_cpu_online | |
| 87/304 Test #20: unit_tests::python_unit_tests ............................................ Passed 1.11 sec | |
| Start 21: pytest::basic_tests_py3.10 | |
| 88/304 Test #266: testcorenrn_gf::coreneuron_cpu_online .................................... Passed 0.99 sec | |
| Start 267: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate | |
| 89/304 Test #21: pytest::basic_tests_py3.10 ............................................... Passed 1.06 sec | |
| Start 22: pytest_coreneuron::basic_tests_py3.10 | |
| 90/304 Test #267: testcorenrn_gf::coreneuron_cpu_online_psolve_alternate ................... Passed 3.33 sec | |
| Start 268: testcorenrn_gf::coreneuron_cpu_offline | |
| 91/304 Test #268: testcorenrn_gf::coreneuron_cpu_offline ................................... Passed 0.58 sec | |
| Start 277: testcorenrn_patstim::neuron | |
| 92/304 Test #277: testcorenrn_patstim::neuron .............................................. Passed 0.44 sec | |
| Start 278: testcorenrn_patstim::coreneuron_cpu_offline_saverestore | |
| 93/304 Test #278: testcorenrn_patstim::coreneuron_cpu_offline_saverestore .................. Passed 0.95 sec | |
| Start 279: testcorenrn_patstim::coreneuron_cpu_offline | |
| 94/304 Test #279: testcorenrn_patstim::coreneuron_cpu_offline .............................. Passed 0.25 sec | |
| Start 282: testcorenrn_vecplay::neuron | |
| 95/304 Test #282: testcorenrn_vecplay::neuron .............................................. Passed 0.60 sec | |
| Start 283: testcorenrn_vecplay::coreneuron_cpu_online | |
| 96/304 Test #283: testcorenrn_vecplay::coreneuron_cpu_online ............................... Passed 0.84 sec | |
| Start 284: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate | |
| 97/304 Test #22: pytest_coreneuron::basic_tests_py3.10 .................................... Passed 6.85 sec | |
| Start 23: datahandle::datahandle_tests | |
| 98/304 Test #284: testcorenrn_vecplay::coreneuron_cpu_online_psolve_alternate .............. Passed 1.02 sec | |
| Start 285: testcorenrn_vecplay::coreneuron_cpu_offline | |
| 99/304 Test #285: testcorenrn_vecplay::coreneuron_cpu_offline .............................. Passed 0.37 sec | |
| Start 294: testcorenrn_watch::neuron | |
| 100/304 Test #23: datahandle::datahandle_tests ............................................. Passed 1.08 sec | |
| Start 24: coverage_tests::cover_tests | |
| 101/304 Test #294: testcorenrn_watch::neuron ................................................ Passed 0.55 sec | |
| Start 295: testcorenrn_watch::coreneuron_cpu_online | |
| 102/304 Test #295: testcorenrn_watch::coreneuron_cpu_online ................................. Passed 1.12 sec | |
| Start 296: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate | |
| 103/304 Test #24: coverage_tests::cover_tests .............................................. Passed 1.50 sec | |
| Start 25: example_nmodl::ca_ap_hoc | |
| 104/304 Test #25: example_nmodl::ca_ap_hoc ................................................. Passed 0.49 sec | |
| Start 26: example_nmodl::cabpump_hoc | |
| 105/304 Test #26: example_nmodl::cabpump_hoc ............................................... Passed 0.30 sec | |
| Start 27: example_nmodl::cachan_hoc | |
| 106/304 Test #27: example_nmodl::cachan_hoc ................................................ Passed 0.29 sec | |
| Start 28: example_nmodl::cadif_hoc | |
| 107/304 Test #28: example_nmodl::cadif_hoc ................................................. Passed 0.24 sec | |
| Start 29: example_nmodl::cadifusl_hoc | |
| 108/304 Test #296: testcorenrn_watch::coreneuron_cpu_online_psolve_alternate ................ Passed 1.50 sec | |
| Start 297: testcorenrn_watch::coreneuron_cpu_offline | |
| 109/304 Test #29: example_nmodl::cadifusl_hoc .............................................. Passed 0.21 sec | |
| Start 30: example_nmodl::cadifusl1_hoc | |
| 110/304 Test #297: testcorenrn_watch::coreneuron_cpu_offline ................................ Passed 0.39 sec | |
| Start 300: testcorenrn_netstimdirect::direct_netstimdirect | |
| 111/304 Test #30: example_nmodl::cadifusl1_hoc ............................................. Passed 0.36 sec | |
| Start 31: example_nmodl::cadifusl2_hoc | |
| 112/304 Test #31: example_nmodl::cadifusl2_hoc ............................................. Passed 0.20 sec | |
| Start 32: example_nmodl::cagk_hoc | |
| 113/304 Test #32: example_nmodl::cagk_hoc .................................................. Passed 0.39 sec | |
| Start 33: example_nmodl::capmp_hoc | |
| 114/304 Test #33: example_nmodl::capmp_hoc ................................................. Passed 0.36 sec | |
| Start 34: example_nmodl::cv_hoc | |
| 115/304 Test #300: testcorenrn_netstimdirect::direct_netstimdirect .......................... Passed 1.03 sec | |
| Start 301: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate | |
| 116/304 Test #34: example_nmodl::cv_hoc .................................................... Passed 0.20 sec | |
| Start 35: example_nmodl::fh_hoc | |
| 117/304 Test #35: example_nmodl::fh_hoc .................................................... Passed 0.25 sec | |
| Start 36: example_nmodl::fit1_hoc | |
| 118/304 Test #36: example_nmodl::fit1_hoc .................................................. Passed 0.30 sec | |
| Start 37: example_nmodl::gap_hoc | |
| 119/304 Test #37: example_nmodl::gap_hoc ................................................... Passed 0.22 sec | |
| Start 38: example_nmodl::hh1_hoc | |
| 120/304 Test #301: testcorenrn_netstimdirect::direct_netstimdirect_psolve_alternate ......... Passed 1.14 sec | |
| Start 39: example_nmodl::hhvect_hoc | |
| Start 40: example_nmodl::nacum_hoc | |
| 121/304 Test #38: example_nmodl::hh1_hoc ................................................... Passed 0.20 sec | |
| Start 41: example_nmodl::nadifl1_hoc | |
| 122/304 Test #40: example_nmodl::nacum_hoc ................................................. Passed 0.19 sec | |
| Start 42: example_nmodl::nadifl2_hoc | |
| 123/304 Test #39: example_nmodl::hhvect_hoc ................................................ Passed 0.19 sec | |
| Start 43: example_nmodl::nadifl3_hoc | |
| 124/304 Test #41: example_nmodl::nadifl1_hoc ............................................... Passed 0.20 sec | |
| Start 44: example_nmodl::nadifl4_hoc | |
| 125/304 Test #43: example_nmodl::nadifl3_hoc ............................................... Passed 0.23 sec | |
| Start 45: example_nmodl::obj_ex_hoc | |
| 126/304 Test #42: example_nmodl::nadifl2_hoc ............................................... Passed 0.24 sec | |
| Start 46: example_nmodl::order_hoc | |
| 127/304 Test #44: example_nmodl::nadifl4_hoc ............................................... Passed 0.25 sec | |
| Start 47: example_nmodl::passiv_hoc | |
| 128/304 Test #45: example_nmodl::obj_ex_hoc ................................................ Passed 0.18 sec | |
| Start 48: example_nmodl::stim1_hoc | |
| 129/304 Test #46: example_nmodl::order_hoc ................................................. Passed 0.22 sec | |
| Start 49: example_nmodl::syn1_hoc | |
| 130/304 Test #47: example_nmodl::passiv_hoc ................................................ Passed 0.21 sec | |
| Start 50: example_nmodl::synpre_hoc | |
| 131/304 Test #48: example_nmodl::stim1_hoc ................................................. Passed 0.19 sec | |
| Start 51: example_nmodl::tstextrn_hoc | |
| 132/304 Test #49: example_nmodl::syn1_hoc .................................................. Passed 0.18 sec | |
| Start 52: example_nmodl::tstpnt1_hoc | |
| 133/304 Test #50: example_nmodl::synpre_hoc ................................................ Passed 0.30 sec | |
| Start 53: example_nmodl::tstpnt2_hoc | |
| 134/304 Test #51: example_nmodl::tstextrn_hoc .............................................. Passed 0.20 sec | |
| Start 54: example_nmodl::tstvec_hoc | |
| 135/304 Test #52: example_nmodl::tstpnt1_hoc ............................................... Passed 0.20 sec | |
| Start 55: example_nmodl::cagkftab_py | |
| 136/304 Test #53: example_nmodl::tstpnt2_hoc ............................................... Passed 0.35 sec | |
| Start 56: example_nmodl::expsynspine_py | |
| 137/304 Test #54: example_nmodl::tstvec_hoc ................................................ Passed 0.43 sec | |
| Start 57: example_nmodl::nonlin_py | |
| 138/304 Test #56: example_nmodl::expsynspine_py ............................................ Passed 1.35 sec | |
| Start 58: example_nmodl::tstpnt1_py | |
| 139/304 Test #58: example_nmodl::tstpnt1_py ................................................ Passed 0.91 sec | |
| Start 59: example_nmodl::tstpnt2_py | |
| 140/304 Test #59: example_nmodl::tstpnt2_py ................................................ Passed 1.06 sec | |
| Start 60: example_nmodl::vlag_py | |
| 141/304 Test #60: example_nmodl::vlag_py ................................................... Passed 1.27 sec | |
| Start 61: hoctests::test_loadbal_hoc | |
| 142/304 Test #61: hoctests::test_loadbal_hoc ............................................... Passed 0.53 sec | |
| Start 62: hoctests::test_random_hoc | |
| 143/304 Test #62: hoctests::test_random_hoc ................................................ Passed 0.29 sec | |
| Start 63: hoctests::perf1_hoc | |
| 144/304 Test #57: example_nmodl::nonlin_py ................................................. Passed 5.41 sec | |
| Start 64: hoctests::test1_hoc | |
| 145/304 Test #64: hoctests::test1_hoc ...................................................... Passed 0.81 sec | |
| Start 65: hoctests::test2_hoc | |
| 146/304 Test #65: hoctests::test2_hoc ...................................................... Passed 0.36 sec | |
| Start 66: hoctests::test3_hoc | |
| 147/304 Test #66: hoctests::test3_hoc ...................................................... Passed 0.34 sec | |
| Start 67: hoctests::test4_hoc | |
| 148/304 Test #67: hoctests::test4_hoc ...................................................... Passed 0.31 sec | |
| Start 68: hoctests::test5_hoc | |
| 149/304 Test #68: hoctests::test5_hoc ...................................................... Passed 0.22 sec | |
| Start 69: hoctests::test6_hoc | |
| 150/304 Test #69: hoctests::test6_hoc ...................................................... Passed 0.28 sec | |
| Start 70: hoctests::test7_hoc | |
| 151/304 Test #70: hoctests::test7_hoc ...................................................... Passed 0.24 sec | |
| Start 71: hoctests::test8_hoc | |
| 152/304 Test #71: hoctests::test8_hoc ...................................................... Passed 0.24 sec | |
| Start 72: hoctests::test9_hoc | |
| 153/304 Test #72: hoctests::test9_hoc ...................................................... Passed 0.31 sec | |
| Start 73: hoctests::test_bbss_py | |
| 154/304 Test #63: hoctests::perf1_hoc ...................................................... Passed 3.36 sec | |
| Start 74: hoctests::test_cvinterp_py | |
| 155/304 Test #55: example_nmodl::cagkftab_py ............................................... Passed 9.36 sec | |
| Start 75: hoctests::test_hocGUI2_py | |
| 156/304 Test #73: hoctests::test_bbss_py ................................................... Passed 1.20 sec | |
| Start 76: hoctests::test_hocmech_py | |
| 157/304 Test #74: hoctests::test_cvinterp_py ............................................... Passed 1.15 sec | |
| Start 77: hoctests::test_kschan_py | |
| 158/304 Test #75: hoctests::test_hocGUI2_py ................................................ Passed 1.11 sec | |
| Start 78: hoctests::test_legacy_setpointer_py | |
| 159/304 Test #76: hoctests::test_hocmech_py ................................................ Passed 1.11 sec | |
| Start 79: hoctests::test_mechfunc_py | |
| 160/304 Test #77: hoctests::test_kschan_py ................................................. Passed 1.43 sec | |
| Start 80: hoctests::test_mechstd_py | |
| 161/304 Test #78: hoctests::test_legacy_setpointer_py ...................................... Passed 1.22 sec | |
| Start 81: hoctests::test_mode_py | |
| 162/304 Test #79: hoctests::test_mechfunc_py ............................................... Passed 1.19 sec | |
| Start 82: hoctests::test_neurondemo_py | |
| 163/304 Test #81: hoctests::test_mode_py ................................................... Passed 1.40 sec | |
| Start 83: hoctests::test_nrniv-launch_py | |
| 164/304 Test #80: hoctests::test_mechstd_py ................................................ Passed 1.58 sec | |
| Start 84: hoctests::test_optim_node_order_py | |
| 165/304 Test #82: hoctests::test_neurondemo_py ............................................. Passed 1.04 sec | |
| Start 85: hoctests::test_random_py | |
| 166/304 Test #83: hoctests::test_nrniv-launch_py ........................................... Passed 0.47 sec | |
| Start 86: hoctests::test_setdata_py | |
| 167/304 Test #84: hoctests::test_optim_node_order_py ....................................... Passed 1.17 sec | |
| Start 87: hoctests::test_shape_py | |
| 168/304 Test #86: hoctests::test_setdata_py ................................................ Passed 1.37 sec | |
| Start 88: hoctests::test_thread_partition_py | |
| 169/304 Test #85: hoctests::test_random_py ................................................. Passed 1.46 sec | |
| Start 89: hoctests::test1_py | |
| 170/304 Test #87: hoctests::test_shape_py .................................................. Passed 1.27 sec | |
| Start 90: hoctests::test2_py | |
| 171/304 Test #89: hoctests::test1_py ....................................................... Passed 1.12 sec | |
| Start 91: hoctests::test9_py | |
| 172/304 Test #88: hoctests::test_thread_partition_py ....................................... Passed 1.38 sec | |
| Start 97: coreneuron_standalone::test_nrn_corenrn_standalone | |
| 173/304 Test #90: hoctests::test2_py ....................................................... Passed 1.12 sec | |
| Start 98: nmodl_tests::test_table | |
| 174/304 Test #91: hoctests::test9_py ....................................................... Passed 1.01 sec | |
| Start 99: nmodl_tests::test_disc | |
| 175/304 Test #97: coreneuron_standalone::test_nrn_corenrn_standalone ....................... Passed 1.94 sec | |
| Start 100: nmodl_tests::test_function_table | |
| 176/304 Test #98: nmodl_tests::test_table .................................................. Passed 1.78 sec | |
| Start 101: nmodl_tests::test_kinetic | |
| 177/304 Test #99: nmodl_tests::test_disc ................................................... Passed 1.63 sec | |
| Start 102: nmodl_tests::test_random | |
| 178/304 Test #100: nmodl_tests::test_function_table ......................................... Passed 1.36 sec | |
| Start 103: nmodl_tests::test_path_spaces | |
| 179/304 Test #101: nmodl_tests::test_kinetic ................................................ Passed 1.40 sec | |
| Start 104: coreneuron_modtests::version_macros | |
| 180/304 Test #102: nmodl_tests::test_random ................................................. Passed 1.54 sec | |
| Start 106: coreneuron_modtests::fornetcon_py_cpu | |
| 181/304 Test #103: nmodl_tests::test_path_spaces ............................................ Passed 1.84 sec | |
| Start 107: coreneuron_modtests::direct_py_cpu | |
| 182/304 Test #104: coreneuron_modtests::version_macros ...................................... Passed 1.79 sec | |
| Start 108: coreneuron_modtests::direct_hoc_cpu | |
| 183/304 Test #106: coreneuron_modtests::fornetcon_py_cpu .................................... Passed 1.61 sec | |
| Start 109: coreneuron_modtests::spikes_py_cpu | |
| 184/304 Test #108: coreneuron_modtests::direct_hoc_cpu ...................................... Passed 1.41 sec | |
| Start 110: coreneuron_modtests::spikes_file_mode_py_cpu | |
| 185/304 Test #107: coreneuron_modtests::direct_py_cpu ....................................... Passed 1.80 sec | |
| Start 111: coreneuron_modtests::fast_imem_py_cpu | |
| 186/304 Test #109: coreneuron_modtests::spikes_py_cpu ....................................... Passed 1.66 sec | |
| Start 112: coreneuron_modtests::datareturn_py_cpu | |
| 187/304 Test #110: coreneuron_modtests::spikes_file_mode_py_cpu ............................. Passed 1.76 sec | |
| Start 113: coreneuron_modtests::test_units_py_cpu | |
| 188/304 Test #111: coreneuron_modtests::fast_imem_py_cpu .................................... Passed 2.04 sec | |
| Start 114: coreneuron_modtests::test_netmove_py_cpu | |
| 189/304 Test #112: coreneuron_modtests::datareturn_py_cpu ................................... Passed 2.73 sec | |
| Start 115: coreneuron_modtests::test_pointer_py_cpu | |
| 190/304 Test #113: coreneuron_modtests::test_units_py_cpu ................................... Passed 1.34 sec | |
| Start 116: coreneuron_modtests::test_watchrange_py_cpu | |
| 191/304 Test #116: coreneuron_modtests::test_watchrange_py_cpu .............................. Passed 1.74 sec | |
| Start 117: coreneuron_modtests::test_psolve_py_cpu | |
| 192/304 Test #114: coreneuron_modtests::test_netmove_py_cpu ................................. Passed 2.97 sec | |
| Start 118: coreneuron_modtests::test_ba_py_cpu | |
| 193/304 Test #118: coreneuron_modtests::test_ba_py_cpu ...................................... Passed 1.37 sec | |
| Start 119: coreneuron_modtests::test_nmodlrandom_py_cpu | |
| 194/304 Test #117: coreneuron_modtests::test_psolve_py_cpu .................................. Passed 1.66 sec | |
| Start 120: coreneuron_modtests::test_nmodlrandom_syntax_py_cpu | |
| 195/304 Test #115: coreneuron_modtests::test_pointer_py_cpu ................................. Passed 4.44 sec | |
| Start 121: coreneuron_modtests::test_natrans_py_cpu | |
| 196/304 Test #119: coreneuron_modtests::test_nmodlrandom_py_cpu ............................. Passed 1.90 sec | |
| Start 122: coreneuron_modtests::array_variable_transfer_run_mode_0_py_cpu | |
| 197/304 Test #121: coreneuron_modtests::test_natrans_py_cpu ................................. Passed 1.16 sec | |
| Start 123: coreneuron_modtests::array_variable_transfer_run_mode_1_py_cpu | |
| 198/304 Test #122: coreneuron_modtests::array_variable_transfer_run_mode_0_py_cpu ........... Passed 1.69 sec | |
| Start 124: coreneuron_modtests::array_variable_transfer_run_mode_2_py_cpu | |
| 199/304 Test #123: coreneuron_modtests::array_variable_transfer_run_mode_1_py_cpu ........... Passed 1.71 sec | |
| Start 125: coreneuron_modtests::array_variable_transfer_file_mode_py_cpu | |
| 200/304 Test #120: coreneuron_modtests::test_nmodlrandom_syntax_py_cpu ...................... Passed 5.01 sec | |
| Start 128: nmodl_tests_coreneuron::test_table_coreneuron_cpu | |
| 201/304 Test #124: coreneuron_modtests::array_variable_transfer_run_mode_2_py_cpu ........... Passed 1.68 sec | |
| Start 129: nmodl_tests_coreneuron::test_disc_coreneuron_cpu | |
| 202/304 Test #125: coreneuron_modtests::array_variable_transfer_file_mode_py_cpu ............ Passed 1.66 sec | |
| Start 130: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu | |
| 203/304 Test #128: nmodl_tests_coreneuron::test_table_coreneuron_cpu ........................ Passed 1.35 sec | |
| Start 131: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu | |
| 204/304 Test #129: nmodl_tests_coreneuron::test_disc_coreneuron_cpu ......................... Passed 1.37 sec | |
| Start 132: modlunit_unitstest | |
| 205/304 Test #130: nmodl_tests_coreneuron::test_function_table_coreneuron_cpu ............... Passed 1.31 sec | |
| Start 133: modlunit_hh | |
| 206/304 Test #132: modlunit_unitstest ....................................................... Passed 0.26 sec | |
| Start 134: modlunit_stim | |
| 207/304 Test #133: modlunit_hh .............................................................. Passed 0.12 sec | |
| Start 135: modlunit_pattern | |
| 208/304 Test #134: modlunit_stim ............................................................ Passed 0.10 sec | |
| Start 136: modlunit_rand | |
| 209/304 Test #136: modlunit_rand ............................................................ Passed 0.10 sec | |
| Start 137: api::hh_sim_cpp | |
| 210/304 Test #135: modlunit_pattern ......................................................... Passed 0.12 sec | |
| Start 138: api::netcon_cpp | |
| 211/304 Test #131: nmodl_tests_coreneuron::test_kinetic_coreneuron_cpu ...................... Passed 0.96 sec | |
| Start 139: api::sections_c | |
| 212/304 Test #137: api::hh_sim_cpp .......................................................... Passed 0.29 sec | |
| Start 140: api::vclamp_cpp | |
| 213/304 Test #139: api::sections_c .......................................................... Passed 0.24 sec | |
| Start 141: pyinit::nrniv_script.py | |
| 214/304 Test #138: api::netcon_cpp .......................................................... Passed 0.55 sec | |
| Start 142: pyinit::nrniv_script.py_error | |
| 215/304 Test #140: api::vclamp_cpp .......................................................... Passed 0.37 sec | |
| Start 143: pyinit::nrniv_two_scripts.py | |
| 216/304 Test #141: pyinit::nrniv_script.py .................................................. Passed 0.17 sec | |
| Start 144: pyinit::nrniv_two_scripts.py_error_check_code | |
| 217/304 Test #142: pyinit::nrniv_script.py_error ............................................ Passed 0.16 sec | |
| Start 145: pyinit::nrniv_two_scripts.py_error_check_output | |
| 218/304 Test #144: pyinit::nrniv_two_scripts.py_error_check_code ............................ Passed 0.14 sec | |
| Start 146: pyinit::nrniv_python_command | |
| 219/304 Test #143: pyinit::nrniv_two_scripts.py ............................................. Passed 0.17 sec | |
| Start 147: pyinit::nrniv_python_command_error | |
| 220/304 Test #145: pyinit::nrniv_two_scripts.py_error_check_output .......................... Passed 0.15 sec | |
| Start 148: pyinit::nrniv_python_script.py | |
| 221/304 Test #146: pyinit::nrniv_python_command ............................................. Passed 0.17 sec | |
| Start 149: pyinit::nrniv_python_script.py_error | |
| 222/304 Test #147: pyinit::nrniv_python_command_error ....................................... Passed 0.17 sec | |
| Start 150: pyinit::nrniv_python_command_twice | |
| 223/304 Test #148: pyinit::nrniv_python_script.py ........................................... Passed 0.16 sec | |
| Start 151: pyinit::nrniv_python_script.py_twice | |
| 224/304 Test #149: pyinit::nrniv_python_script.py_error ..................................... Passed 0.16 sec | |
| Start 152: pyinit::nrniv_python_command_args | |
| 225/304 Test #150: pyinit::nrniv_python_command_twice ....................................... Passed 0.15 sec | |
| Start 153: pyinit::nrniv_python_script.py_args | |
| 226/304 Test #151: pyinit::nrniv_python_script.py_twice ..................................... Passed 0.19 sec | |
| Start 154: pyinit::nrniv_nopython_PythonObject | |
| 227/304 Test #152: pyinit::nrniv_python_command_args ........................................ Passed 0.15 sec | |
| Start 155: pyinit::nrniv_nopython_PythonObject_pyexe | |
| 228/304 Test #153: pyinit::nrniv_python_script.py_args ...................................... Passed 0.15 sec | |
| Start 156: pyinit::nrniv_nopython_PythonObject_pyenv | |
| 229/304 Test #154: pyinit::nrniv_nopython_PythonObject ...................................... Passed 0.16 sec | |
| Start 157: pyinit::nrniv_py3.10_python_command_version_check | |
| 230/304 Test #156: pyinit::nrniv_nopython_PythonObject_pyenv ................................ Passed 0.13 sec | |
| Start 158: pyinit::nrniv_py3.10_python_check_sys_path | |
| 231/304 Test #155: pyinit::nrniv_nopython_PythonObject_pyexe ................................ Passed 0.14 sec | |
| Start 160: pyinit::nrniv_py3.10_nrnpython_check_sys_path | |
| 232/304 Test #157: pyinit::nrniv_py3.10_python_command_version_check ........................ Passed 0.20 sec | |
| Start 162: pyinit::nrniv_py3.10_python_check_sys_prefix | |
| 233/304 Test #160: pyinit::nrniv_py3.10_nrnpython_check_sys_path ............................ Passed 0.19 sec | |
| Start 164: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix | |
| 234/304 Test #158: pyinit::nrniv_py3.10_python_check_sys_path ............................... Passed 0.23 sec | |
| Start 166: pyinit::nrniv_py3.10_python_check_sys_exec_prefix | |
| 235/304 Test #162: pyinit::nrniv_py3.10_python_check_sys_prefix ............................. Passed 0.16 sec | |
| Start 168: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix | |
| 236/304 Test #166: pyinit::nrniv_py3.10_python_check_sys_exec_prefix ........................ Passed 0.16 sec | |
| Start 170: pyinit::nrniv_py3.10_python_check_sys_base_prefix | |
| 237/304 Test #164: pyinit::nrniv_py3.10_nrnpython_check_sys_prefix .......................... Passed 0.21 sec | |
| Start 172: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix | |
| 238/304 Test #168: pyinit::nrniv_py3.10_nrnpython_check_sys_exec_prefix ..................... Passed 0.37 sec | |
| Start 174: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix | |
| 239/304 Test #170: pyinit::nrniv_py3.10_python_check_sys_base_prefix ........................ Passed 0.43 sec | |
| Start 176: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix | |
| 240/304 Test #172: pyinit::nrniv_py3.10_nrnpython_check_sys_base_prefix ..................... Passed 0.55 sec | |
| Start 178: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding | |
| 241/304 Test #174: pyinit::nrniv_py3.10_python_check_sys_base_exec_prefix ................... Passed 0.31 sec | |
| Start 180: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding | |
| 242/304 Test #176: pyinit::nrniv_py3.10_nrnpython_check_sys_base_exec_prefix ................ Passed 0.23 sec | |
| Start 182: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding | |
| 243/304 Test #178: pyinit::nrniv_py3.10_python_check_sys_stderr.encoding .................... Passed 0.22 sec | |
| Start 184: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding | |
| 244/304 Test #180: pyinit::nrniv_py3.10_nrnpython_check_sys_stderr.encoding ................. Passed 0.23 sec | |
| Start 186: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding | |
| 245/304 Test #182: pyinit::nrniv_py3.10_python_check_sys_stdin.encoding ..................... Passed 0.24 sec | |
| Start 188: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding | |
| 246/304 Test #184: pyinit::nrniv_py3.10_nrnpython_check_sys_stdin.encoding .................. Passed 0.24 sec | |
| Start 190: pyinit::nrniv_py3.10_python_command_import_neuron | |
| 247/304 Test #186: pyinit::nrniv_py3.10_python_check_sys_stdout.encoding .................... Passed 0.21 sec | |
| Start 191: pyinit::py3.10_command_import_neuron | |
| 248/304 Test #188: pyinit::nrniv_py3.10_nrnpython_check_sys_stdout.encoding ................. Passed 0.20 sec | |
| Start 192: pyinit::nrniv_py3.10_hoc_command_nrnpython | |
| 249/304 Test #192: pyinit::nrniv_py3.10_hoc_command_nrnpython ............................... Passed 0.29 sec | |
| Start 193: pyinit::nrniv_pydef_python_command_version_check | |
| 250/304 Test #193: pyinit::nrniv_pydef_python_command_version_check ......................... Passed 0.56 sec | |
| Start 194: pyinit::nrniv_pydef_python_check_sys_path | |
| 251/304 Test #194: pyinit::nrniv_pydef_python_check_sys_path ................................ Passed 0.23 sec | |
| Start 196: pyinit::nrniv_pydef_nrnpython_check_sys_path | |
| 252/304 Test #190: pyinit::nrniv_py3.10_python_command_import_neuron ........................ Passed 1.23 sec | |
| Start 198: pyinit::nrniv_pydef_python_check_sys_prefix | |
| 253/304 Test #191: pyinit::py3.10_command_import_neuron ..................................... Passed 1.22 sec | |
| Start 200: pyinit::nrniv_pydef_nrnpython_check_sys_prefix | |
| 254/304 Test #196: pyinit::nrniv_pydef_nrnpython_check_sys_path ............................. Passed 0.22 sec | |
| Start 202: pyinit::nrniv_pydef_python_check_sys_exec_prefix | |
| 255/304 Test #198: pyinit::nrniv_pydef_python_check_sys_prefix .............................. Passed 0.21 sec | |
| Start 204: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix | |
| 256/304 Test #200: pyinit::nrniv_pydef_nrnpython_check_sys_prefix ........................... Passed 0.22 sec | |
| Start 206: pyinit::nrniv_pydef_python_check_sys_base_prefix | |
| 257/304 Test #202: pyinit::nrniv_pydef_python_check_sys_exec_prefix ......................... Passed 0.24 sec | |
| Start 208: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix | |
| 258/304 Test #204: pyinit::nrniv_pydef_nrnpython_check_sys_exec_prefix ...................... Passed 0.19 sec | |
| Start 210: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix | |
| 259/304 Test #206: pyinit::nrniv_pydef_python_check_sys_base_prefix ......................... Passed 0.19 sec | |
| Start 212: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix | |
| 260/304 Test #208: pyinit::nrniv_pydef_nrnpython_check_sys_base_prefix ...................... Passed 0.40 sec | |
| Start 214: pyinit::nrniv_pydef_python_check_sys_stderr.encoding | |
| 261/304 Test #212: pyinit::nrniv_pydef_nrnpython_check_sys_base_exec_prefix ................. Passed 0.43 sec | |
| Start 216: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding | |
| 262/304 Test #210: pyinit::nrniv_pydef_python_check_sys_base_exec_prefix .................... Passed 0.45 sec | |
| Start 218: pyinit::nrniv_pydef_python_check_sys_stdin.encoding | |
| 263/304 Test #214: pyinit::nrniv_pydef_python_check_sys_stderr.encoding ..................... Passed 0.32 sec | |
| Start 220: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding | |
| 264/304 Test #218: pyinit::nrniv_pydef_python_check_sys_stdin.encoding ...................... Passed 0.24 sec | |
| Start 222: pyinit::nrniv_pydef_python_check_sys_stdout.encoding | |
| 265/304 Test #216: pyinit::nrniv_pydef_nrnpython_check_sys_stderr.encoding .................. Passed 0.27 sec | |
| Start 224: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding | |
| 266/304 Test #220: pyinit::nrniv_pydef_nrnpython_check_sys_stdin.encoding ................... Passed 0.22 sec | |
| Start 226: pyinit::nrniv_pydef_python_command_import_neuron | |
| 267/304 Test #222: pyinit::nrniv_pydef_python_check_sys_stdout.encoding ..................... Passed 0.21 sec | |
| Start 227: pyinit::pydef_command_import_neuron | |
| 268/304 Test #224: pyinit::nrniv_pydef_nrnpython_check_sys_stdout.encoding .................. Passed 0.23 sec | |
| Start 228: pyinit::nrniv_pydef_hoc_command_nrnpython | |
| 269/304 Test #228: pyinit::nrniv_pydef_hoc_command_nrnpython ................................ Passed 0.28 sec | |
| Start 229: external_nrntest | |
| 270/304 Test #226: pyinit::nrniv_pydef_python_command_import_neuron ......................... Passed 0.91 sec | |
| Start 236: external_ringtest_nrn::optim_node_order | |
| 271/304 Test #227: pyinit::pydef_command_import_neuron ...................................... Passed 0.92 sec | |
| Start 252: testcorenrn_bbcore::compare_results | |
| 272/304 Test #252: testcorenrn_bbcore::compare_results ...................................... Passed 0.09 sec | |
| Start 258: testcorenrn_conc::compare_results | |
| 273/304 Test #258: testcorenrn_conc::compare_results ........................................ Passed 0.04 sec | |
| Start 264: testcorenrn_deriv::compare_results | |
| 274/304 Test #264: testcorenrn_deriv::compare_results ....................................... Passed 0.04 sec | |
| Start 270: testcorenrn_gf::compare_results | |
| 275/304 Test #270: testcorenrn_gf::compare_results .......................................... Passed 0.03 sec | |
| Start 276: testcorenrn_kin::compare_results | |
| 276/304 Test #276: testcorenrn_kin::compare_results ......................................... Passed 0.03 sec | |
| Start 281: testcorenrn_patstim::compare_results | |
| 277/304 Test #281: testcorenrn_patstim::compare_results ..................................... Passed 0.03 sec | |
| Start 287: testcorenrn_vecplay::compare_results | |
| 278/304 Test #287: testcorenrn_vecplay::compare_results ..................................... Passed 0.04 sec | |
| Start 299: testcorenrn_watch::compare_results | |
| 279/304 Test #299: testcorenrn_watch::compare_results ....................................... Passed 0.03 sec | |
| Start 302: testcorenrn_netstimdirect::compare_results | |
| 280/304 Test #302: testcorenrn_netstimdirect::compare_results ............................... Passed 0.03 sec | |
| 281/304 Test #236: external_ringtest_nrn::optim_node_order .................................. Passed 31.85 sec | |
| Start 93: parallel::partrans | |
| 282/304 Test #93: parallel::partrans ....................................................... Passed 1.41 sec | |
| Start 94: parallel::netpar | |
| 283/304 Test #94: parallel::netpar ......................................................... Passed 1.43 sec | |
| Start 95: parallel::bas | |
| 284/304 Test #95: parallel::bas ............................................................ Passed 3.76 sec | |
| Start 96: parallel::nrntest_fast | |
| 285/304 Test #96: parallel::nrntest_fast ................................................... Passed 1.70 sec | |
| Start 105: coreneuron_modtests::inputpresyn_py | |
| 286/304 Test #105: coreneuron_modtests::inputpresyn_py ...................................... Passed 1.45 sec | |
| Start 126: coreneuron_modtests::spikes_mpi_file_mode_py_cpu | |
| 287/304 Test #126: coreneuron_modtests::spikes_mpi_file_mode_py_cpu ......................... Passed 1.28 sec | |
| Start 303: tqperf::coreneuron_special | |
| 288/304 Test #303: tqperf::coreneuron_special ............................................... Passed 3.85 sec | |
| Start 304: tqperf::coreneuron_python | |
| 289/304 Test #304: tqperf::coreneuron_python ................................................ Passed 2.56 sec | |
| 290/304 Test #229: external_nrntest ......................................................... Passed 63.61 sec | |
| Start 292: testcorenrn_vecevent::coreneuron_cpu_offline::preparation | |
| 291/304 Test #292: testcorenrn_vecevent::coreneuron_cpu_offline::preparation ................ Passed 0.38 sec | |
| Start 230: reduced_dentate::neuron | |
| 292/304 Test #230: reduced_dentate::neuron .................................................. Passed 61.14 sec | |
| Start 231: reduced_dentate::coreneuron_cpu | |
| 293/304 Test #231: reduced_dentate::coreneuron_cpu .......................................... Passed 49.00 sec | |
| Start 242: external_ringtest::coreneuron_cpu_mpi_threads | |
| 294/304 Test #242: external_ringtest::coreneuron_cpu_mpi_threads ............................ Passed 2.54 sec | |
| Start 243: external_ringtest::coreneuron_cpu_mpi_threads_python | |
| 295/304 Test #243: external_ringtest::coreneuron_cpu_mpi_threads_python ..................... Passed 2.30 sec | |
| Start 288: testcorenrn_vecevent::neuron | |
| 296/304 Test #288: testcorenrn_vecevent::neuron ............................................. Passed 0.30 sec | |
| Start 289: testcorenrn_vecevent::coreneuron_cpu_online | |
| 297/304 Test #289: testcorenrn_vecevent::coreneuron_cpu_online .............................. Passed 0.65 sec | |
| Start 290: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate | |
| 298/304 Test #290: testcorenrn_vecevent::coreneuron_cpu_online_psolve_alternate ............. Passed 0.71 sec | |
| Start 291: testcorenrn_vecevent::coreneuron_cpu_offline | |
| 299/304 Test #291: testcorenrn_vecevent::coreneuron_cpu_offline ............................. Passed 0.23 sec | |
| Start 92: parallel::subworld | |
| 300/304 Test #92: parallel::subworld ....................................................... Passed 1.21 sec | |
| Start 127: coreneuron_modtests::test_subworlds_py_cpu | |
| 301/304 Test #127: coreneuron_modtests::test_subworlds_py_cpu ............................... Passed 1.44 sec | |
| Start 232: reduced_dentate::compare_results | |
| Start 246: external_ringtest::compare_results | |
| Start 293: testcorenrn_vecevent::compare_results | |
| 302/304 Test #293: testcorenrn_vecevent::compare_results .................................... Passed 0.02 sec | |
| 303/304 Test #232: reduced_dentate::compare_results ......................................... Passed 0.02 sec | |
| 304/304 Test #246: external_ringtest::compare_results ....................................... Passed 0.02 sec | |
| 100% tests passed, 0 tests failed out of 304 | |
| Total Test time (real) = 287.40 sec | |
| [32;1m$ cmake --build . --target install[0;m | |
| [0/2] Re-checking globbed directories... | |
| [1/2] Re-running CMake... | |
| -- git describe failed (stdout: '', stderr: 'fatal: No names found, cannot describe anything.', code: 128), skipping the version check | |
| -- 3rd party project: using Random123 from "external/Random123" | |
| -- 3rd party project: using eigen from "external/eigen" | |
| -- Enabling sanitizers: address | |
| -- Sanitizer runtime library: /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
| -- Checking if /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/bin/python is a working python | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found version "3.8.2") | |
| -- Sub-project : using nanobind from from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nanobind | |
| -- 3rd party project: using CLI11 from "external/CLI11" | |
| CMake Deprecation Warning at external/CLI11/CMakeLists.txt:1 (cmake_minimum_required): | |
| Compatibility with CMake < 3.5 will be removed from a future version of | |
| CMake. | |
| Update the VERSION argument <min> value or use a ...<max> suffix to tell | |
| CMake that the project does not need compatibility with older versions. | |
| -- Building CoreNEURON | |
| -- Could NOT find nmodl (missing: nmodl_BINARY) | |
| -- Sub-project : using nmodl from from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl | |
| -- CHECKING FOR FLEX/BISON | |
| -- Found BISON: /opt/homebrew/opt/bison/bin/bison (found suitable version "3.8.2", minimum required is "3.0") | |
| -- Adding Flex include path as : /opt/homebrew/opt/flex/include/ | |
| -- NMODL_TEST_FORMATTING: OFF | |
| -- NMODL_GIT_HOOKS: OFF | |
| -- NMODL_GIT_COMMIT_HOOKS: | |
| -- NMODL_GIT_PUSH_HOOKS: courtesy-msg | |
| -- NMODL_STATIC_ANALYSIS: OFF | |
| -- NMODL_TEST_STATIC_ANALYSIS: OFF | |
| -- 3rd party project: using fmt from "ext/fmt" | |
| -- Version: 10.2.1 | |
| -- Build type: Custom | |
| -- 3rd party project: using json from "ext/json" | |
| -- Using the multi-header code from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/nmodl/ext/json/include/ | |
| -- 3rd party project: using pybind11 from "ext/pybind11" | |
| -- pybind11 v2.12.0 | |
| -- 3rd party project: using spdlog from "ext/spdlog" | |
| -- Build spdlog: 1.13.0 | |
| -- Build type: Custom | |
| -- CHECKING FOR PYTHON | |
| -- | |
| -- Configured NMODL 0.0 (2ad008f 2024-07-03 11:35:03 +0200) | |
| -- | |
| -- You can now build NMODL using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------------+-------------------------------------------------------- | |
| -- test | Run unit tests | |
| -- install | Will install NMODL to: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd | |
| -- Build Type | Custom | |
| -- Python Bindings | OFF | |
| -- Flex | /opt/homebrew/opt/flex/bin/flex | |
| -- Bison | /opt/homebrew/opt/bison/bin/bison | |
| -- Python | /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/bin/python | |
| -- Linked against | ON | |
| -- --------------------+-------------------------------------------------------- | |
| -- See documentation : https://github.com/BlueBrain/nmodl/ | |
| -- --------------------+-------------------------------------------------------- | |
| -- | |
| -- | |
| -- CoreNEURON is enabled with following build configuration: | |
| -- --------------------+-------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------------+-------------------------------------------------------- | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd -std=c++17 -DCORENEURON_BUILD -DCORENRN_BUILD=1 -DEIGEN_DONT_PARALLELIZE -DNRNMPI=1 -DLAYOUT=0 -DDISABLE_HOC_EXP -DENABLE_SPLAYTREE_QUEUING -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope | |
| -- Build Type | SHARED | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include | |
| -- OpenMP | ON | |
| -- NMODL PATH | /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/bin/nmodl | |
| -- NMODL FLAGS | | |
| -- GPU Support | OFF | |
| -- Auto Timeout | ON | |
| -- Wrap exp() | OFF | |
| -- SplayTree Queue | ON | |
| -- NetReceive Buffer | ON | |
| -- Caliper | OFF | |
| -- Likwid | OFF | |
| -- Unit Tests | ON | |
| -- Reporting | OFF | |
| -- --------------------+-------------------------------------------------------- | |
| -- | |
| Extracting link flags from target 'nrngnu', beware that this can be fragile. Got: | |
| Extracting link flags from target 'sparse13', beware that this can be fragile. Got: | |
| For 'nrnpython' going to see TARGET 'nanobind' recursively. | |
| Extracting link flags from target 'nanobind', beware that this can be fragile. Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;nanobind | |
| Extracting link flags from target 'nrnpython', beware that this can be fragile. Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;nanobind | |
| Extracting link flags from target 'Threads::Threads', beware that this can be fragile. Got: /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib;nanobind | |
| Generating link flags from path /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib Got: /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib | |
| -- Sub-project : using catch2 from from /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/external/catch2 | |
| -- Found Python module 'pytest' with version(s): 8.1.1 | |
| -- Found Python module 'pytest_cov' with version(s): 5.0.0 | |
| -- 3rd party project: using rxd/testdata from "test/rxd/testdata" | |
| -- Found Python module 'mpi4py' with version(s): 3.1.6 | |
| -- Disabling coreneuron_modtests::fornetcon_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::direct_hoc_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::spikes_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::fast_imem_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::datareturn_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_units_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_netmove_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_pointer_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_watchrange_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_psolve_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_ba_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_nmodlrandom_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_nmodlrandom_syntax_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_natrans_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_0_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_1_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_run_mode_2_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::array_variable_transfer_file_mode_py_gpu: gpu not enabled | |
| -- Found Python module 'mpi4py' with version(s): 3.1.6 | |
| -- Disabling coreneuron_modtests::spikes_mpi_file_mode_py_gpu: gpu not enabled | |
| -- Disabling coreneuron_modtests::test_subworlds_py_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_disc_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_function_table_coreneuron_gpu: gpu not enabled | |
| -- Disabling nmodl_tests_coreneuron::test_kinetic_coreneuron_gpu: gpu not enabled | |
| -- Disabling reduced_dentate::coreneuron_gpu: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline_saverestore: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_python: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_offline: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads: gpu not enabled | |
| -- Disabling external_ringtest::coreneuron_gpu_mpi_threads_python: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_bbcore::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_conc::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_deriv::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_gf::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_kin::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline_saverestore: gpu not enabled | |
| -- Disabling testcorenrn_patstim::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecplay::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_vecevent::coreneuron_gpu_offline: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_online_psolve_alternate: gpu not enabled | |
| -- Disabling testcorenrn_watch::coreneuron_gpu_offline: gpu not enabled | |
| -- | |
| -- Configured NEURON 9.0.0 | |
| -- | |
| -- You can now build NEURON using: | |
| -- cmake --build . --parallel 8 [--target TARGET] | |
| -- You might want to adjust the number of parallel build jobs for your system. | |
| -- Some non-default targets you might want to build: | |
| -- --------------+-------------------------------------------------------------- | |
| -- Target | Description | |
| -- --------------+-------------------------------------------------------------- | |
| -- install | Will install NEURON to: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install | |
| -- | Change the install location of NEURON using: | |
| -- | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path> | |
| -- docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean | |
| -- uninstall | Removes files installed by make install (todo) | |
| -- --------------+-------------------------------------------------------------- | |
| -- Build option | Status | |
| -- --------------+-------------------------------------------------------------- | |
| -- C COMPILER | /usr/bin/gcc | |
| -- CXX COMPILER | /usr/bin/g++ | |
| -- BUILD_TYPE | Custom (allowed: Custom;Debug;Release;RelWithDebInfo;Fast;FastDebug) | |
| -- COMPILE FLAGS | -O1 -g -openmp-simd -fno-omit-frame-pointer -shared-libsan -fsanitize=address -fsanitize-address-use-after-scope -O1 -g -openmp-simd | |
| -- Shared | ON | |
| -- MPI | ON | |
| -- DYNAMIC | OFF | |
| -- INC | /opt/homebrew/Cellar/open-mpi/5.0.1/include | |
| -- LIB | /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib | |
| -- Python | ON | |
| -- DYNAMIC | OFF | |
| -- MODULE | ON | |
| -- python3.10 (default) | |
| -- EXE | /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/bin/python | |
| -- INC | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/include/python3.10 | |
| -- LIB | /opt/homebrew/opt/python@3.10/Frameworks/Python.framework/Versions/3.10/lib/libpython3.10.dylib | |
| -- Readline | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libreadline.tbd | |
| -- Curses | /Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libcurses.tbd;/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk/usr/lib/libform.tbd | |
| -- RX3D | OFF | |
| -- Interviews | OFF | |
| -- CoreNEURON | ON | |
| -- PATH | /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/src/coreneuron | |
| -- LINK FLAGS | -lcorenrnmech -Wl,-rpath,/opt/homebrew/Cellar/open-mpi/5.0.1/lib /opt/homebrew/Cellar/open-mpi/5.0.1/lib/libmpi.dylib | |
| -- Tests | ON | |
| -- --------------+-------------------------------------------------------------- | |
| -- See documentation : https://www.neuron.yale.edu/neuron/ | |
| -- --------------+-------------------------------------------------------------- | |
| -- | |
| -- Configuring done (3.5s) | |
| -- Generating done (0.2s) | |
| -- Build files have been written to: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build | |
| [0/2] Re-checking globbed directories... | |
| [1/6] Update hh.mod for CoreNEURON compatibility | |
| [2/6] Generating help_data.dat | |
| [3/6] cd /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/src/nrnoc && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E env PROJECT_VERSION=9.0.0 bash /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/git2nrnversion_h.sh /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn > nrnversion.h.tmp && /opt/homebrew/Cellar/cmake/3.28.1/bin/cmake -E copy_if_different nrnversion.h.tmp nrnversion.h | |
| fatal: No names found, cannot describe anything. | |
| [4/6] cd /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/src/nrniv && true | |
| [5/6] Running utility command for hoc_module | |
| INFO:root:setup.py called with:setup.py build --cmake-build-dir /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build --disable-rx3d --without-nrnpython --build-lib=/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python build_ext --define=NRN_ASAN_ENABLED,USE_PYTHON,NRN_ENABLE_THREADS,CORENRN_BUILD=0 | |
| INFO:root:Setting SDKROOT=/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX12.3.sdk | |
| WARNING:root:You are building a wheel with a Python built for macOS >=12.0.0. Your wheel won't run on older versions, consider using an official Python build from python.org | |
| WARNING:root:Setting MACOSX_DEPLOYMENT_TARGET=12.0 | |
| INFO:root:Extension common compile flags defaultdict(<class 'list'>, {'library_dirs': ['/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib'], 'libraries': ['nrniv'], 'language': 'c++'}) | |
| INFO:root:RX3D is DISABLED | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools/__init__.py:80: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated. | |
| !! | |
| ******************************************************************************** | |
| Requirements should be satisfied by a PEP 517 installer. | |
| If you are using pip, you can try `pip install --use-pep517`. | |
| ******************************************************************************** | |
| !! | |
| dist.fetch_build_eggs(dist.setup_requires) | |
| WARNING setuptools_scm.pyproject_reading toml section missing 'pyproject.toml does not contain a tool.setuptools_scm section' | |
| Traceback (most recent call last): | |
| File "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/_integration/pyproject_reading.py", line 36, in read_pyproject | |
| section = defn.get("tool", {})[tool_name] | |
| KeyError: 'setuptools_scm' | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/lib/python3.10/site-packages/setuptools_scm/git.py:167: UserWarning: "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn" is shallow and may cause errors | |
| warnings.warn(f'"{wd.path}" is shallow and may cause errors') | |
| INFO:root:running build | |
| INFO:root:running build_py | |
| INFO:root:copying share/lib/python/neuron/hclass3.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/expect_hocerr.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/psection.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/config.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/units.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/sections.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/__init__.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/coreneuron.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/doc.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/gui.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/nonvint_block_supervisor.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron | |
| INFO:root:copying share/lib/python/neuron/neuroml/metadata.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/morphml.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/xml2nrn.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/__init__.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/neuroml.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/rdxml.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/neuroml/biophysics.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/neuroml | |
| INFO:root:copying share/lib/python/neuron/tests/_subclass.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_all.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/__init__.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_neuron.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_vector.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/test_rxd.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests | |
| INFO:root:copying share/lib/python/neuron/tests/utils/coreneuron_available.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/__init__.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/strtobool.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/capture_stdout.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/tests/utils/checkresult.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/tests/utils | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdException.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/options.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/plugins.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdsection.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/species.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxdmath.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rate.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/region.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/multiCompartmentReaction.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/constants.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/dimension3.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/__init__.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/section1d.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/export.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/initializer.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rangevar.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/geometry.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/rxd.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/generalizedReaction.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/nodelist.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/node.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/gui.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/rxd/reaction.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/rxd | |
| INFO:root:copying share/lib/python/neuron/crxd/__init__.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/crxd | |
| INFO:root:copying share/lib/python/neuron/gui2/setup_threejs.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/config.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/__init__.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/rangevar.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/plotshape.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:copying share/lib/python/neuron/gui2/utilities.py -> /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/build/lib/python/neuron/gui2 | |
| INFO:root:running build_ext | |
| INFO:root:==> Building Python extensions | |
| INFO:root:running build_scripts | |
| [5/6] Install the project... | |
| -- Install configuration: "Custom" | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/bin/nrn-enable-sanitizer | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/libsymtab.a | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/librxdmath.dylib | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/libnrniv.dylib | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/libnrngnu.a | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/libvisitor.a | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/hclass3.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/hoc.cpython-310-darwin.so | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/expect_hocerr.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/psection.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/neuroml | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/neuroml/metadata.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/neuroml/morphml.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/neuroml/xml2nrn.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/neuroml/__init__.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/neuroml/neuroml.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/neuroml/rdxml.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/neuroml/biophysics.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/config.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/units.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/sections.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/rxd | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdException.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/rxd/options.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/rxd/plugins.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdsection.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/rxd/species.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/rxd/rxdmath.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/rxd/rate.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/rxd/region.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/rxd/multiCompartmentReaction.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/rxd/constants.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/rxd/dimension3.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/rxd/__init__.py | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/lib/python/neuron/rxd/section1d.py | |
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| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/lib/hoc/netparmpi.hoc | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/lib/hoc/pointbsr.hoc | |
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| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/lib/hoc/import3d/read_swc.hoc | |
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| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/lib/prologue.id | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/lib/nrn.defaults.in | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/lib/cleanup | |
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| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/lib/auditscripts | |
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| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/lib/auditscripts/hocaudit.sh | |
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| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo | |
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| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/nomodel.hoc | |
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| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/pyramid.nrn | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/dynclamp.ses | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/demo.hoc | |
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| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/release.mod | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/camchan.mod | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/capump.mod | |
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| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/cabpump.mod | |
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| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/nrn_ansi.h | |
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| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/nrniv | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/nrniv/profiler_interface.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/nrniv/nrniv_decl.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/engine.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/nrnconf.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/gpu | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/gpu/nrn_acc_manager.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mechanism | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mechanism/membfunc.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mechanism/register_mech.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mechanism/mechanism.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech_mapping.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mechanism/eion.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/mod2c_core_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mechanism/mech/cfile/cabvars.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mpi | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mpi/core | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mpi/core/nrnmpi.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpidec.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpi.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mpi/lib | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mpi/lib/nrnmpi.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/mpi/nrnmpiuse.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/config | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/config/config.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/config/version_macros.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/config/neuron_version.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/coreneuron.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/network | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/network/multisend.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/network/have2want.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/network/netpar.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/network/tnode.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/network/netcon.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/network/partrans.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/network/tqueue.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/network/netcvode.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/nrn2core_direct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/mech_report.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/core2nrn_data_return.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/prcellstate.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/nrn_setup.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/output_spikes.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/lfp.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/setup_fornetcon.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/nrn_checkpoint.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/user_params.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/nrnsection_mapping.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/nrn_filehandler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/mem_layout_util.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/phase1.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/phase3.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/reports | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_event.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/reports/report_handler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/reports/sonata_report_handler.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/reports/nrnreport.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/io/phase2.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/vrecitem.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/utils_cuda.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/nrnmutdec.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/string_utils.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_assert.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/nrnoc_aux.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/progressbar/progressbar.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/memory_utils.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/profile | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/profile/profiler_interface.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/lpt.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/offload.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/memory.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/units.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/utils.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/randoms | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/randoms/nrnran123.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/nrn_stats.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/utils/ivocvect.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/nrnoc | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md2redef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/nrnoc/md1redef.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/membrane_definitions.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/sim | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/sim/multicore.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/sim/fast_imem.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/crout_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/errcodes.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_struct.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/newton_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/ssimplic_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/sim/scopmath/sparse_thread.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/apps | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/apps/corenrn_parameters.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/permute | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/permute/node_permute.h | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/permute/cellorder.hpp | |
| -- Up-to-date: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/coreneuron/permute/data_layout.hpp | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/nrnassrt.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/spconfig.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/runge.hpp | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/nrnoc_ml.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/mech_api.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/mcran4.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/ssimplic_thread.hpp | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/hocparse.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/ssimplic.hpp | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123 | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/ReinterpretCtr.hpp | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/xlcfeatures.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/pgccfeatures.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/fujitsufeatures.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/metalfeatures.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/gccfeatures.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/iccfeatures.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/open64features.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/sunprofeatures.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/compilerfeatures.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/clangfeatures.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/crayfeatures.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/sse.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/msvcfeatures.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/openclfeatures.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/features/nvccfeatures.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/threefry.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/conventional | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/conventional/Engine.hpp | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/conventional/gsl_cbrng.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/philox.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/gsl_microrng.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/aes.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/array.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/MicroURNG.hpp | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/u01fixedpt.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/boxmuller.hpp | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/uniform.hpp | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/Random123/ars.h | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/sparse_thread.hpp | |
| -- Installing: /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/include/treeset.h | |
| .: replacing existing signature | |
| .: replacing existing signature | |
| .: replacing existing signature | |
| .: replacing existing signature | |
| .: replacing existing signature | |
| "install" of folder "nrn" of folder "cellular" of folder "hpc" of folder "J1338551" of folder "P220250" of folder "3" of folder "builds" of folder "gitlab-runner" of folder "Users" | |
| /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release | |
| cfiles = | |
| Mod files: "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod" | |
| Creating 'arm64' directory for .o files. | |
| MODOBJS= ./cabpump.o ./cachan1.o ./camchan.o ./capump.o ./invlfire.o ./khhchan.o ./nacaex.o ./nachan.o ./release.o | |
| -> [32mNMODL[0m ../cabpump.mod | |
| -> [32mNMODL[0m ../cachan1.mod | |
| -> [32mNMODL[0m ../camchan.mod | |
| -> [32mCompiling[0m mod_func.cpp | |
| Translating cachan1.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cachan1.cpp | |
| Translating camchan.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/camchan.cpp | |
| -> [32mNMODL[0m ../capump.mod | |
| Thread Safe | |
| Thread Safe | |
| Translating cabpump.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cabpump.cpp | |
| Notice: Assignment to the GLOBAL variable, "vol", is not thread safe | |
| -> [32mNMODL[0m ../invlfire.mod | |
| -> [32mNMODL[0m ../khhchan.mod | |
| -> [32mNMODL[0m ../nacaex.mod | |
| Translating capump.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/capump.cpp | |
| Thread Safe | |
| -> [32mNMODL[0m ../nachan.mod | |
| Translating invlfire.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/invlfire.cpp | |
| Thread Safe | |
| Translating khhchan.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/khhchan.cpp | |
| Thread Safe | |
| -> [32mNMODL[0m ../release.mod | |
| Translating nacaex.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nacaex.cpp | |
| Thread Safe | |
| -> [32mCompiling[0m /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cabpump.cpp | |
| -> [32mCompiling[0m /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/cachan1.cpp | |
| Translating nachan.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nachan.cpp | |
| Thread Safe | |
| Translating release.mod into /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/release.cpp | |
| -> [32mCompiling[0m /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/camchan.cpp | |
| Thread Safe | |
| -> [32mCompiling[0m /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/capump.cpp | |
| -> [32mCompiling[0m /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/invlfire.cpp | |
| -> [32mCompiling[0m /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/khhchan.cpp | |
| -> [32mCompiling[0m /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nacaex.cpp | |
| -> [32mCompiling[0m /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/nachan.cpp | |
| -> [32mCompiling[0m /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/release.cpp | |
| => [32mLINKING[0m shared library "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/./libnrnmech.dylib" | |
| ld: warning: -undefined dynamic_lookup may not work with chained fixups | |
| => [32mLINKING[0m executable "/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install/share/nrn/demo/release/arm64/./special" LDFLAGS are: | |
| Successfully created arm64/special | |
| NEURON -- VERSION + HEAD (8c3ba45+) 2024-07-04 | |
| Duke, Yale, and the BlueBrain Project -- Copyright 1984-2022 | |
| See http://neuron.yale.edu/neuron/credits | |
| Additional mechanisms from files | |
| "cabpump.mod" "cachan1.mod" "camchan.mod" "capump.mod" "invlfire.mod" "khhchan.mod" "nacaex.mod" "nachan.mod" "release.mod" | |
| [32;1m$ export PATH=${INSTALL_DIR}/bin:${PATH}[0;m | |
| [32;1m$ export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python/[0;m | |
| [32;1m$ if [[ -f "${INSTALL_DIR}/bin/nrn-enable-sanitizer" ]]; then[0;m | |
| [32;1m$ echo --- bin/nrn-enable-sanitizer ---[0;m | |
| --- bin/nrn-enable-sanitizer --- | |
| [32;1m$ cat bin/nrn-enable-sanitizer[0;m | |
| #!/usr/bin/env bash | |
| prefix="${NRNHOME:-/Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/install}" | |
| export NRN_SANITIZER_PRELOAD_VAR=DYLD_INSERT_LIBRARIES | |
| export NRN_SANITIZER_PRELOAD_VAL=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib | |
| if [[ "$1" == "--preload" ]]; then | |
| shift | |
| if [[ "$1" == "python" ]]; then | |
| # nrn-enable-sanitizer --preload python is used in the CI, but for it to | |
| # work on macOS we need to substitute the real Python binary in place of any | |
| # shims. This is done from CMake, and PYTHON_EXECUTABLE contains the real | |
| # binary. | |
| shift | |
| DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 /Users/gitlab-runner/builds/3/P220250/J1338551/hpc/cellular/nrn/venv/bin/python "$@" | |
| else | |
| DYLD_INSERT_LIBRARIES=/Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/lib/clang/14.0.0/lib/darwin/libclang_rt.asan_osx_dynamic.dylib MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@" | |
| fi | |
| else | |
| MallocNanoZone=0 ASAN_OPTIONS=check_initialization_order=1:detect_stack_use_after_return=1:detect_leaks=0 "$@" | |
| fi | |
| [32;1m$ echo ---[0;m | |
| --- | |
| [32;1m$ nrn_enable_sanitizer=${INSTALL_DIR}/bin/nrn-enable-sanitizer[0;m | |
| [32;1m$ nrn_enable_sanitizer_preload="${nrn_enable_sanitizer} --preload"[0;m | |
| [32;1m$ else[0;m | |
| [32;1m$ $PYTHON --version && ${nrn_enable_sanitizer_preload} python -c 'import neuron; neuron.test()'[0;m | |
| Python 3.10.13 | |
| testAssignmentSlicing (neuron.tests.test_vector.VectorTestCase) ... ok | |
| testBytesize (neuron.tests.test_vector.VectorTestCase) | |
| Test that Vector.__array_interface__ returns the proper bytesize (of a double) ... ok | |
| testEndian (neuron.tests.test_vector.VectorTestCase) | |
| Test that Vector.__array_interface__ returns the proper byteorder (endian) ... ok | |
| testErrorHandling (neuron.tests.test_vector.VectorTestCase) ... ok | |
| testNegativeIndex (neuron.tests.test_vector.VectorTestCase) ... ok | |
| testNumpyInteraction (neuron.tests.test_vector.VectorTestCase) | |
| Testing numpy.array <=> hoc.Vector interaction ... ok | |
| testPerformance (neuron.tests.test_vector.VectorTestCase) | |
| Test performance of Vector<->list,array ... ok | |
| testSlicing (neuron.tests.test_vector.VectorTestCase) ... ok | |
| testABI (neuron.tests.test_neuron.NeuronTestCase) | |
| Test use of some Py_LIMITED_API for python3. ... ok | |
| testExtendedSection (neuron.tests.test_neuron.NeuronTestCase) ... | |
| Executed "l = range(1000000)". Elapsed = 0.000027 s | |
| Executed "v = h.Vector(l)". Elapsed = 0.070894 s | |
| inplace: | |
| Executed "v.from_python(l)". Elapsed = 0.068371 s | |
| Executed "a = numpy.array(v)". Elapsed = 0.003425 s | |
| inplace: | |
| Executed "v.to_python(a)". Elapsed = 0.000853 s | |
| Executed "v2 = h.Vector(a)". Elapsed = 0.003210 s | |
| inplace: | |
| Executed "v2.from_python(a)". Elapsed = 0.000817 s | |
| Executed "l2 = list(v2)". Elapsed = 0.040694 s | |
| inplace: | |
| Executed "v.to_python(l2)". Elapsed = 0.007037 s | |
| Executed "v2 = h.Vector(a[::-1])". Elapsed = 0.003250 s | |
| Executed "a2 = numpy.array(v2)". Elapsed = 0.003455 s | |
| test: ok | |
| testHClass (neuron.tests.test_neuron.NeuronTestCase) | |
| Test subclass of hoc class. ... ok | |
| testHelp (neuron.tests.test_neuron.NeuronTestCase) ... ok | |
| testIterators (neuron.tests.test_neuron.NeuronTestCase) | |
| Test section, segment, mechanism, rangevar iterators. ... ok | |
| testRxDexistence (neuron.tests.test_neuron.NeuronTestCase) ... ok | |
| testSectionArgOrder (neuron.tests.test_neuron.NeuronTestCase) | |
| First optional arg for Section is name (but name="name" is recommended) ... ok | |
| testSectionCell (neuron.tests.test_neuron.NeuronTestCase) | |
| Section.cell() internally referenced as weakref. ... ok | |
| testSectionListIterator (neuron.tests.test_neuron.NeuronTestCase) | |
| As of v8.0, iteration over a SectionList does not change the cas ... ok | |
| test_newobj_err (neuron.tests.test_neuron.NeuronTestCase) | |
| Test deletion of incompletely constructed objects ... NEURON: generate an error | |
| near line 1 | |
| ob = new NewObj(1, 2) | |
| ^ | |
| NewObj[4].execerror("generate a...") | |
| NewObj[4].init(0, 2) | |
| NewObj[3].init(1, 2) | |
| NewObj[2].execute1("ob = new N...", NewObj[2]) | |
| and others | |
| ok | |
| testpsection (neuron.tests.test_neuron.NeuronTestCase) ... Syntax: | |
| .. code-block:: | |
| python | |
| h.xpanel('name') | |
| h.xpanel('name', [0-1]) | |
| h.xpanel() | |
| h.xpanel(x, y) | |
| h.xpanel(scroll) | |
| h.xpanel(scroll, x, y) | |
| Description: | |
| ``h.xpanel("name")`` | |
| ``h.xpanel("name", [0-1])`` | |
| Title of a new panel. Every | |
| button, menu, and value between this and a closing ``xpanel()`` command | |
| with no arguments (or placement args) belongs to this panel. | |
| If the form is used with a second argument equal to 1, then | |
| the panel is laid out horizontally. Otherwise the default is vertically. | |
| ``h.xpanel()`` | |
| ``h.xpanel(x, y)`` | |
| done constructing the panel. so map it to the screen with position | |
| optionally specified. | |
| ``h.xpanel(scroll)`` | |
| ``h.xpanel(scroll, x, y)`` | |
| as above but if the first arg is a number, then the value determines | |
| whether the panel will be inside a scrollbox. Scroll = 0 means a scrollbox | |
| will NOT be used. Scroll = 1 means the panel will be inside a scrollbox. | |
| Scroll = -1 is the default value and whether or not a scrollbox is used | |
| is determined by the number of panel items in comparison with the | |
| value of the panel_scroll property in the nrn.defaults file. | |
| Skipping because NRN_ENABLE_RX3D=False | |
| #NewObj and #Foo in existence 3 6 | |
| after del a #NewObj and #Foo in existence 0 0 | |
| ok | |
| ---------------------------------------------------------------------- | |
| Ran 19 tests in 2.193s | |
| OK | |
| [32;1m$ if [[ ! "${cmake_args[*]}" =~ "NRN_ENABLE_RX3D=OFF" && ! "${cmake_args[*]}" =~ "NRN_ENABLE_CORENEURON=ON" ]]; then[0;m | |
| section_end:1720096322:step_script [0Ksection_start:1720096322:archive_cache [0K[0K[36;1mSaving cache for successful job[0;m[0;m | |
| [32;1mCreating cache mac_m1_cmake_build: [cmake, ON, OFF, OFF, address]-nmodl-include-header-cleanup-1-non_protected...[0;m | |
| Runtime platform [0;m arch[0;m=arm64 os[0;m=darwin pid[0;m=359 revision[0;m=43b2dc3d version[0;m=15.4.0 | |
| ./ccache: found 12425 matching files and directories[0;m | |
| No URL provided, cache will not be uploaded to shared cache server. Cache will be stored only locally.[0;m | |
| [32;1mCreated cache[0;m | |
| section_end:1720096347:archive_cache [0Ksection_start:1720096347:cleanup_file_variables [0K[0K[36;1mCleaning up project directory and file based variables[0;m[0;m | |
| section_end:1720096347:cleanup_file_variables [0K[32;1mJob succeeded[0;m |
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| [0KRunning with gitlab-runner 15.5.0 (0d4137b8)[0;m | |
| [0K on BB5 map runner pnPo3yJy[0;m | |
| section_start:1720095680:resolve_secrets [0K[0K[36;1mResolving secrets[0;m[0;m | |
| section_end:1720095680:resolve_secrets [0Ksection_start:1720095680:prepare_executor [0K[0K[36;1mPreparing the "custom" executor[0;m[0;m | |
| [0KUsing Custom executor with driver BB5 PROD runner v0.0.3...[0;m | |
| BB5 PROD runner running on bbpv1.epfl.ch, version 15.5.0, user | |
| TMPDIR is /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/tmp/custom-executor2868295723, slurm job id , CUSTOM_ENV_CI_RUNNER_TAGS is ["bb5_map"] | |
| Runner ID 29, project root hpc, project name nrn | |
| Pipeline ID 220250, build ref , job ID 1338552 | |
| Build dir /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250, optional exclusive flag , optional cpus per task flag --cpus-per-task=6, optional qos flag , optional reservation flag | |
| A slurm job will be created with name GL_J1338552_PROD_P2160_CP19_C8 | |
| Job parameters: memory=30750M, cpus_per_task=6, duration=1:00:00, constraint=cpu ntasks=1 account=proj9998 user=bbpcihpcproj12 partition=prod qos= reservation= | |
| Not executing the chown -R | |
| sbatch: INFO: Activating auto partition selection plugin, please report errors to HPC/CS | |
| sbatch: INFO: Job specifies cpu constraint, setting --constraint=[skl|clx] | |
| Submitted batch job 2286870 | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: PD | |
| job state: R | |
| sbatch: sbatch -p prod -A proj9998 --ntasks=1 --cpus-per-task=6 --mem=30750M --job-name=GL_J1338552_PROD_P2160_CP19_C8 -C cpu --no-requeue -D /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250 --time=1:00:00 --wrap="sleep infinity" | |
| srun: srun --mpi=none --chdir=/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs//bbpcihpcproj12/P220250 --ntasks=1 --jobid=2286870 --cpus-per-task=6 --mem=30750M | |
| section_end:1720095694:prepare_executor [0Ksection_start:1720095694:prepare_script [0K[0K[36;1mPreparing environment[0;m[0;m | |
| Using git from spack modules | |
| Running on r1i6n32 via bbpv1.epfl.ch... | |
| section_end:1720095698:prepare_script [0Ksection_start:1720095698:get_sources [0K[0K[36;1mGetting source from Git repository[0;m[0;m | |
| Using git from spack modules | |
| [32;1mSkipping Git repository setup[0;m | |
| [32;1mSkipping Git checkout[0;m | |
| [32;1mSkipping Git submodules setup[0;m | |
| section_end:1720095699:get_sources [0Ksection_start:1720095699:step_script [0K[0K[36;1mExecuting "step_script" stage of the job script[0;m[0;m | |
| [0;33mWARNING: Starting with version 14.0 the 'build_script' stage will be replaced with 'step_script': https://gitlab.com/gitlab-org/gitlab-runner/-/issues/26426[0;m | |
| Using git from spack modules | |
| [32;1m$ if [[ -n "${SPACK_ENV_FILE_URL}" && "${PARSE_GITHUB_PR_DESCRIPTIONS,,}" == "true" ]]; then[0;m | |
| [32;1m$ cat > parse_description.py << END_SCRIPT # collapsed multi-line command[0;m | |
| [32;1m$ cat parse_description.py[0;m | |
| import os | |
| import re | |
| import requests | |
| pr_info = requests.get("https://api.github.com/repos/{}/pulls/{}".format( | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_TARGET_REPOSITORY'], | |
| os.environ['CI_EXTERNAL_PULL_REQUEST_IID']), | |
| headers={'Accept': 'application/vnd.github.v3+json'}) | |
| pr_body = pr_info.json()["body"] | |
| # match something like NEURON_BRANCH=foo/bar | |
| # special case for SPACK_DEPLOYMENT_SUFFIX=foo/bar | |
| pat = re.compile('^([A-Z0-9_]+)_([A-Z]+)=([A-Z0-9\-\_\/\+\.]+)$', re.IGNORECASE) | |
| def parse_term(m): | |
| ref_type = m.group(2).lower() | |
| is_deployment_suffix = ref_type == 'suffix' and m.group(1).lower() == 'spack_deployment' | |
| if ref_type not in {'branch', 'tag', 'ref'} and not is_deployment_suffix: return | |
| print(m.group(1).upper() + '_' + ref_type.upper() + '=' + m.group(3)) | |
| if pr_body is not None: | |
| for pr_body_line in pr_body.splitlines(): | |
| if not pr_body_line.startswith('CI_BRANCHES:'): continue | |
| for config_term in pr_body_line[12:].split(','): | |
| pat.sub(parse_term, config_term) | |
| [32;1m$ (module load unstable python-dev; python parse_description.py) > input_variables.env[0;m | |
| [32;1m$ else[0;m | |
| [32;1m$ cat input_variables.env[0;m | |
| NMODL_BRANCH=include-solver-headers | |
| [32;1m$ for var_to_unset in $(sed 's/^\(.*\?\)_\(BRANCH\|COMMIT\|TAG\)=.*$/\1_BRANCH\n\1_COMMIT\n\1_TAG/' input_variables.env); do # collapsed multi-line command[0;m | |
| Unsetting NMODL_BRANCH | |
| [32;1m$ set -o allexport[0;m | |
| [32;1m$ . input_variables.env[0;m | |
| [32;1m$ set +o allexport[0;m | |
| [32;1m$ unset MODULEPATH[0;m | |
| [32;1m$ . /gpfs/bbp.cscs.ch/ssd/apps/bsd/${SPACK_DEPLOYMENT_SUFFIX}/config/modules.sh[0;m | |
| [32;1m$ echo "MODULEPATH=${MODULEPATH}" > spack_clone_variables.env[0;m | |
| [32;1m$ echo Preparing to clone Spack into ${PWD}[0;m | |
| Preparing to clone Spack into /gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P220250/J1338552 | |
| [32;1m$ if [[ -z "${SPACK_BRANCH}" && ( -n "${SPACK_COMMIT}" || -n "${SPACK_TAG}" ) ]]; then[0;m | |
| [32;1m$ echo Checking out the ${SPACK_BRANCH} of Spack...[0;m | |
| Checking out the develop of Spack... | |
| [32;1m$ module load unstable git[0;m | |
| [32;1m$ git clone -c feature.manyFiles=true --depth 1 --single-branch --branch ${SPACK_BRANCH} ${SPACK_URL} spack[0;m | |
| Cloning into 'spack'... | |
| Updating files: 3% (376/11295) Updating files: 4% (452/11295) Updating files: 5% (565/11295) Updating files: 6% (678/11295) Updating files: 6% (765/11295) Updating files: 7% (791/11295) Updating files: 8% (904/11295) Updating files: 9% (1017/11295) Updating files: 10% (1130/11295) Updating files: 10% (1157/11295) Updating files: 11% (1243/11295) Updating files: 12% (1356/11295) Updating files: 12% (1432/11295) Updating files: 13% (1469/11295) Updating files: 14% (1582/11295) Updating files: 14% (1674/11295) Updating files: 15% (1695/ |
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