Bede Constantinides bede
bede
/ Build failure on OS X 10.10.5
Created
March 12, 2016 18:16
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| After replacing /usr/bin/gcc and /usr/bin/g++ with symlinks to GCC 5.3 binaries... | |
| l-umobcdja2:freebayes Bede$ make | |
| wget -q http://hypervolu.me/freebayes/build/v1.0.2-6-g3ce827d & | |
| cd src && /Applications/Xcode.app/Contents/Developer/usr/bin/make | |
| DETECTED_VERSION = v1.0.2-6-g3ce827d-dirty | |
| CURRENT_VERSION = v1.0.2-6-g3ce827d | |
| Updating version file. | |
| cd ../bamtools && mkdir -p build && cd build && cmake .. && /Applications/Xcode.app/Contents/Developer/usr/bin/make | |
| -- Configuring done |
bede
/ onecodex_real-time_k-mer_search_api.ipynb
Last active
February 11, 2016 11:04
OneCodex real-time search API
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bede
/ plotly-streaming-example.ipynb
Last active
February 4, 2016 14:40
Plotly Streaming API example
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| class Spades < Formula | |
| desc "SPAdes: de novo genome assembly" | |
| homepage "http://bioinf.spbau.ru/spades/" | |
| # tag "bioinformatics" | |
| # doi "10.1089/cmb.2012.0021" | |
| url "http://spades.bioinf.spbau.ru/release3.6.2/SPAdes-3.6.2.tar.gz" | |
| sha256 "20897e2707623ee1033d3c88fefc42771fa4bbaafaf0f95642991d83b361eb5f" |
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| l-umobcdja2:homebrew-science Bede$ brew audit spades | |
| homebrew/science/spades: | |
| * Non-executables were installed to "/usr/local/Cellar/spades/3.6.2/bin" | |
| The offending files are: | |
| /usr/local/Cellar/spades/3.6.2/bin/spades_init.pyc | |
| Error: 1 problem in 1 formula | |
| l-umobcdja2:homebrew-science Bede$ |
bede
/ python_basic_calculations.ipynb
Created
November 3, 2015 14:31
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bede
/ ebi_parallel_blast.ipynb
Last active
November 2, 2015 12:42
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| var tracks = [ | |
| { | |
| trackName: "track1", | |
| trackType: "track", | |
| visible: true, | |
| trackFeatures: "complex", | |
| featureThreshold: 1000, | |
| mouseover_callback: 'islandPopup', | |
| mouseout_callback: 'islandPopupClear', | |
| linear_mouseclick: 'linearPopup', |
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| >EDGE_1_length_179_cov_1.64557; | |
| TAGCATTTTAATATTATACATAACATGGTATAATATTAGATGTGTAATATAAAATCTAAA | |
| GCAACTACTACAAAAACAATACTAGAAGTTATGGCTACTAAGCCAACAAAGGATAAAAAA | |
| TAGAATCAAAATTAATTAATCCAAAAGAAGGAAGTAAAAGGGAACAAAGAATAGGTGGG | |
| >EDGE_1_length_179_cov_1.64557'; | |
| CCCACCTATTCTTTGTTCCCTTTTACTTCCTTCTTTTGGATTAATTAATTTTGATTCTAT | |
| TTTTTATCCTTTGTTGGCTTAGTAGCCATAACTTCTAGTATTGTTTTTGTAGTAGTTGCT | |
| TTAGATTTTATATTACACATCTAATATTATACCATGTTATGTATAATATTAAAATGCTA | |
| >EDGE_2_length_255_cov_1.11111; | |
| GAAAAACTCATTCTATGAGTGAATACACTTGGCAAGAAGTAGTGGGGCTGTAATTGTGAT |
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