Created
April 22, 2024 08:38
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(partial) EasyBuild log for failed build of /tmp/eb_install.kHBfs/eb-3z_12294/files_pr20402/c/chromVARmotifs/chromVARmotifs-0.2.0-foss-2023a-R-4.3.2.eb (PR(s) #20402)
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| == 2024-04-22 10:37:22,727 easyblock.py:313 INFO This is EasyBuild 4.9.1 (framework: 4.9.1, easyblocks: 4.9.1) on host interactive2. | |
| == 2024-04-22 10:37:22,727 easyblock.py:319 INFO This is easyblock RPackage from module easybuild.easyblocks.generic.rpackage (/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/EasyBuild/4.9.1/lib/python3.6/site-packages/easybuild/easyblocks/generic/rpackage.py) | |
| == 2024-04-22 10:37:22,728 easyblock.py:1056 INFO Build dir set to /dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2 | |
| == 2024-04-22 10:37:22,728 easyblock.py:1113 INFO Software install dir set to /home1/p251204/easybuildinstall/software/chromVARmotifs/0.2.0-foss-2023a-R-4.3.2 | |
| == 2024-04-22 10:37:22,728 easyblock.py:1118 INFO Module install dir set to /home1/p251204/easybuildinstall/modules/all | |
| == 2024-04-22 10:37:22,728 easyblock.py:288 INFO Init completed for application name chromVARmotifs version 0.2.0 | |
| == 2024-04-22 10:37:22,728 easyblock.py:4234 INFO Obtained application instance of for chromVARmotifs (easyblock: RPackage) | |
| == 2024-04-22 10:37:22,728 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-04-22 10:37:22,728 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-04-22 10:37:22,728 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-04-22 10:37:22,729 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='chromvarmotifs', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='chromvarmotifs', module_name='chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', mpi_cmd_prefix='mpirun -n 1', name='chromVARmotifs', nameletter='c', nameletterlower='c', namelower='chromvarmotifs', rmajver='4', rminver='3', rshortver='4.3', rver='4.3.2', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.3.2' | |
| == 2024-04-22 10:37:22,729 one.py:180 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2024-04-22 10:37:22,730 filetools.py:1912 INFO Creating directory /tmp/eb_install.kHBfs/eb-3z_12294/reprod_20240422103722_109 (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:22,730 easyblock.py:4488 INFO Dumped easyconfig instance to /tmp/eb_install.kHBfs/eb-3z_12294/reprod_20240422103722_109/chromVARmotifs-0.2.0-foss-2023a-R-4.3.2.eb | |
| == 2024-04-22 10:37:22,730 filetools.py:1912 INFO Creating directory /tmp/eb_install.kHBfs/eb-3z_12294/reprod_20240422103722_109/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:22,731 filetools.py:2425 INFO /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/EasyBuild/4.9.1/lib/python3.6/site-packages/easybuild/easyblocks/generic/rpackage.py copied to /tmp/eb_install.kHBfs/eb-3z_12294/reprod_20240422103722_109/easyblocks/rpackage.py | |
| == 2024-04-22 10:37:22,732 easyblock.py:4468 INFO Dumped easyblock rpackage.py required for reproduction to /tmp/eb_install.kHBfs/eb-3z_12294/reprod_20240422103722_109/easyblocks | |
| == 2024-04-22 10:37:22,732 filetools.py:1912 INFO Creating directory /tmp/eb_install.kHBfs/eb-3z_12294/reprod_20240422103722_109/hooks (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:22,735 filetools.py:2425 INFO /home1/p251204/easybuild/cit-hpc-easybuild/hooks/habrok.py copied to /tmp/eb_install.kHBfs/eb-3z_12294/reprod_20240422103722_109/hooks/habrok.py | |
| == 2024-04-22 10:37:22,735 easyblock.py:4500 INFO Dumped hooks file /home1/p251204/easybuild/cit-hpc-easybuild/hooks/habrok.py which is (potentially) required for reproduction to /tmp/eb_install.kHBfs/eb-3z_12294/reprod_20240422103722_109/hooks/habrok.py | |
| == 2024-04-22 10:37:22,736 easyblock.py:2239 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2024-04-22 10:37:22,736 build_log.py:267 INFO building and installing chromVARmotifs/0.2.0-foss-2023a-R-4.3.2... | |
| == 2024-04-22 10:37:22,739 filetools.py:2005 INFO Lock /home1/p251204/easybuildinstall/software/.locks/_home1_p251204_easybuildinstall_software_chromVARmotifs_0.2.0-foss-2023a-R-4.3.2.lock does not exist | |
| == 2024-04-22 10:37:22,740 filetools.py:1946 INFO Creating lock at /home1/p251204/easybuildinstall/software/.locks/_home1_p251204_easybuildinstall_software_chromVARmotifs_0.2.0-foss-2023a-R-4.3.2.lock... | |
| == 2024-04-22 10:37:22,740 filetools.py:1912 INFO Creating directory /home1/p251204/easybuildinstall/software/.locks/_home1_p251204_easybuildinstall_software_chromVARmotifs_0.2.0-foss-2023a-R-4.3.2.lock (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:22,742 filetools.py:1955 INFO Lock created: /home1/p251204/easybuildinstall/software/.locks/_home1_p251204_easybuildinstall_software_chromVARmotifs_0.2.0-foss-2023a-R-4.3.2.lock | |
| == 2024-04-22 10:37:22,742 build_log.py:267 INFO fetching files... | |
| == 2024-04-22 10:37:22,745 easyblock.py:3956 INFO Starting fetch step | |
| == 2024-04-22 10:37:22,746 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-04-22 10:37:22,746 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-04-22 10:37:22,746 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-04-22 10:37:22,746 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='chromvarmotifs', builddir='/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='chromvarmotifs', installdir='/home1/p251204/easybuildinstall/software/chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', module_name='chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', mpi_cmd_prefix='mpirun -n 1', name='chromVARmotifs', nameletter='c', nameletterlower='c', namelower='chromvarmotifs', rmajver='4', rminver='3', rshortver='4.3', rver='4.3.2', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.3.2' | |
| == 2024-04-22 10:37:22,747 easyblock.py:3964 INFO Running method fetch_step part of step fetch | |
| == 2024-04-22 10:37:22,747 easyblock.py:2361 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2024-04-22 10:37:22,747 easyblock.py:810 INFO Considering directory in which easyconfig file is located when searching for chromVARmotifs-0.2.0.tar.gz: /tmp/eb_install.kHBfs/eb-3z_12294/files_pr20402/c/chromVARmotifs | |
| == 2024-04-22 10:37:22,747 tools.py:274 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/EasyBuild/4.9.1/bin/eb | |
| == 2024-04-22 10:37:22,747 tools.py:288 INFO Also considering installation prefix /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/EasyBuild/4.9.1 (determined via path to 'eb' script)... | |
| == 2024-04-22 10:37:22,895 filetools.py:1912 INFO Creating directory /home4/hb-software/sources/c/chromVARmotifs (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:23,373 filetools.py:816 INFO File size for https://github.com/GreenleafLab/chromVARmotifs/archive/38bed55.tar.gz: None | |
| == 2024-04-22 10:37:23,468 filetools.py:823 INFO Downloaded file chromVARmotifs-0.2.0.tar.gz from url https://github.com/GreenleafLab/chromVARmotifs/archive/38bed55.tar.gz to /home4/hb-software/sources/c/chromVARmotifs/chromVARmotifs-0.2.0.tar.gz | |
| == 2024-04-22 10:37:23,468 filetools.py:855 INFO Successful download of file chromVARmotifs-0.2.0.tar.gz from url https://github.com/GreenleafLab/chromVARmotifs/archive/38bed55.tar.gz to path /home4/hb-software/sources/c/chromVARmotifs/chromVARmotifs-0.2.0.tar.gz | |
| == 2024-04-22 10:37:23,469 easyblock.py:951 INFO Successfully downloaded source file chromVARmotifs-0.2.0.tar.gz from https://github.com/GreenleafLab/chromVARmotifs/archive/38bed55.tar.gz | |
| == 2024-04-22 10:37:23,469 easyblock.py:496 INFO Added sources: [{'name': 'chromVARmotifs-0.2.0.tar.gz', 'path': '/home4/hb-software/sources/c/chromVARmotifs/chromVARmotifs-0.2.0.tar.gz', 'cmd': None, 'checksum': '6bc0894e1ffc9aa51d7eefce71ca0a586b271e7c6fd60211b179862eb51e4f1b', 'finalpath': '/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2'}] | |
| == 2024-04-22 10:37:23,469 easyblock.py:2404 INFO no patches provided | |
| == 2024-04-22 10:37:23,488 easyblock.py:2414 INFO md5 checksum for /home4/hb-software/sources/c/chromVARmotifs/chromVARmotifs-0.2.0.tar.gz: 3723b85d83ead3eb65bab859c9799dcb | |
| == 2024-04-22 10:37:23,492 easyblock.py:2414 INFO sha256 checksum for /home4/hb-software/sources/c/chromVARmotifs/chromVARmotifs-0.2.0.tar.gz: 6bc0894e1ffc9aa51d7eefce71ca0a586b271e7c6fd60211b179862eb51e4f1b | |
| == 2024-04-22 10:37:23,492 easyblock.py:2449 INFO Checking dirs that need to be created: ['/home1/p251204/easybuildinstall/software/chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', '/home1/p251204/easybuildinstall/modules/all/chromVARmotifs', '/home1/p251204/easybuildinstall/modules/bio/chromVARmotifs'] | |
| == 2024-04-22 10:37:23,492 filetools.py:1912 INFO Creating directory /home1/p251204/easybuildinstall/software/chromVARmotifs/0.2.0-foss-2023a-R-4.3.2 (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:23,498 filetools.py:1912 INFO Creating directory /home1/p251204/easybuildinstall/modules/all/chromVARmotifs (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:23,518 filetools.py:1912 INFO Creating directory /home1/p251204/easybuildinstall/modules/bio/chromVARmotifs (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:23,520 build_log.py:267 INFO creating build dir, resetting environment... | |
| == 2024-04-22 10:37:23,525 easyblock.py:3956 INFO Starting ready step | |
| == 2024-04-22 10:37:23,525 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-04-22 10:37:23,526 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-04-22 10:37:23,526 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-04-22 10:37:23,526 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='chromvarmotifs', builddir='/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='chromvarmotifs', installdir='/home1/p251204/easybuildinstall/software/chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', module_name='chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', mpi_cmd_prefix='mpirun -n 1', name='chromVARmotifs', nameletter='c', nameletterlower='c', namelower='chromvarmotifs', rmajver='4', rminver='3', rshortver='4.3', rver='4.3.2', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.3.2' | |
| == 2024-04-22 10:37:23,526 easyblock.py:3964 INFO Running method check_readiness_step part of step ready | |
| == 2024-04-22 10:37:23,535 run.py:247 INFO running cmd: ulimit -u | |
| == 2024-04-22 10:37:23,548 easyblock.py:2258 INFO Setting parallelism: 60 | |
| == 2024-04-22 10:37:23,650 easyblock.py:2310 WARNING Loaded modules detected: ['2023.01', 'StdEnv', 'EasyBuild/4.9.1'] | |
| == 2024-04-22 10:37:23,652 easyblock.py:3964 INFO Running method make_builddir part of step ready | |
| == 2024-04-22 10:37:23,653 filetools.py:1912 INFO Creating directory /dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2 (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:23,653 easyblock.py:3964 INFO Running method reset_env part of step ready | |
| == 2024-04-22 10:37:23,654 easyblock.py:3964 INFO Running method handle_iterate_opts part of step ready | |
| == 2024-04-22 10:37:23,654 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-04-22 10:37:23,655 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-04-22 10:37:23,655 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-04-22 10:37:23,655 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='chromvarmotifs', builddir='/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='chromvarmotifs', installdir='/home1/p251204/easybuildinstall/software/chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', module_name='chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', mpi_cmd_prefix='mpirun -n 1', name='chromVARmotifs', nameletter='c', nameletterlower='c', namelower='chromvarmotifs', parallel='60', rmajver='4', rminver='3', rshortver='4.3', rver='4.3.2', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.3.2' | |
| == 2024-04-22 10:37:23,656 build_log.py:267 INFO unpacking... | |
| == 2024-04-22 10:37:23,660 easyblock.py:3956 INFO Starting source step | |
| == 2024-04-22 10:37:23,660 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-04-22 10:37:23,660 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-04-22 10:37:23,660 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-04-22 10:37:23,661 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='chromvarmotifs', builddir='/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='chromvarmotifs', installdir='/home1/p251204/easybuildinstall/software/chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', module_name='chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', mpi_cmd_prefix='mpirun -n 1', name='chromVARmotifs', nameletter='c', nameletterlower='c', namelower='chromvarmotifs', parallel='60', rmajver='4', rminver='3', rshortver='4.3', rver='4.3.2', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.3.2' | |
| == 2024-04-22 10:37:23,661 easyblock.py:3964 INFO Running method checksum_step part of step source | |
| == 2024-04-22 10:37:23,663 easyblock.py:2467 INFO Checksum verification for /home4/hb-software/sources/c/chromVARmotifs/chromVARmotifs-0.2.0.tar.gz using 6bc0894e1ffc9aa51d7eefce71ca0a586b271e7c6fd60211b179862eb51e4f1b passed. | |
| == 2024-04-22 10:37:23,663 easyblock.py:3964 INFO Running method extract_step part of step source | |
| == 2024-04-22 10:37:23,663 easyblock.py:2579 INFO Unpacking source chromVARmotifs-0.2.0.tar.gz | |
| == 2024-04-22 10:37:23,664 run.py:247 INFO running cmd: tar xzf /home4/hb-software/sources/c/chromVARmotifs/chromVARmotifs-0.2.0.tar.gz | |
| == 2024-04-22 10:37:23,696 build_log.py:267 INFO patching... | |
| == 2024-04-22 10:37:23,701 easyblock.py:3956 INFO Starting patch step | |
| == 2024-04-22 10:37:23,702 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-04-22 10:37:23,702 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-04-22 10:37:23,703 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-04-22 10:37:23,703 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='chromvarmotifs', builddir='/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='chromvarmotifs', installdir='/home1/p251204/easybuildinstall/software/chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', module_name='chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', mpi_cmd_prefix='mpirun -n 1', name='chromVARmotifs', nameletter='c', nameletterlower='c', namelower='chromvarmotifs', parallel='60', rmajver='4', rminver='3', rshortver='4.3', rver='4.3.2', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.3.2' | |
| == 2024-04-22 10:37:23,703 easyblock.py:3964 INFO Running method patch_step part of step patch | |
| == 2024-04-22 10:37:23,703 build_log.py:267 INFO preparing... | |
| == 2024-04-22 10:37:23,707 easyblock.py:3956 INFO Starting prepare step | |
| == 2024-04-22 10:37:23,707 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-04-22 10:37:23,707 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-04-22 10:37:23,707 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-04-22 10:37:23,707 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='chromvarmotifs', builddir='/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='chromvarmotifs', installdir='/home1/p251204/easybuildinstall/software/chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', module_name='chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', mpi_cmd_prefix='mpirun -n 1', name='chromVARmotifs', nameletter='c', nameletterlower='c', namelower='chromvarmotifs', parallel='60', rmajver='4', rminver='3', rshortver='4.3', rver='4.3.2', start_dir='None', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.3.2' | |
| == 2024-04-22 10:37:23,708 easyblock.py:3964 INFO Running method prepare_step part of step prepare | |
| == 2024-04-22 10:37:23,710 modules.py:626 INFO Checking whether R/4.3.2-gfbf-2023a exists... | |
| == 2024-04-22 10:37:23,710 modules.py:631 INFO Module R/4.3.2-gfbf-2023a exists (found in list of available modules) | |
| == 2024-04-22 10:37:23,711 modules.py:654 INFO Result for existence check of R/4.3.2-gfbf-2023a module: True | |
| == 2024-04-22 10:37:23,711 modules.py:626 INFO Checking whether R-bundle-CRAN/2023.12-foss-2023a exists... | |
| == 2024-04-22 10:37:23,711 modules.py:631 INFO Module R-bundle-CRAN/2023.12-foss-2023a exists (found in list of available modules) | |
| == 2024-04-22 10:37:23,711 modules.py:654 INFO Result for existence check of R-bundle-CRAN/2023.12-foss-2023a module: True | |
| == 2024-04-22 10:37:23,711 modules.py:626 INFO Checking whether R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2 exists... | |
| == 2024-04-22 10:37:23,711 modules.py:631 INFO Module R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2 exists (found in list of available modules) | |
| == 2024-04-22 10:37:23,711 modules.py:654 INFO Result for existence check of R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2 module: True | |
| == 2024-04-22 10:37:23,711 modules.py:626 INFO Checking whether foss/2023a exists... | |
| == 2024-04-22 10:37:23,711 modules.py:634 INFO Module foss/2023a not found in list of available modules, checking via 'module show'... | |
| == 2024-04-22 10:37:24,460 modules.py:654 INFO Result for existence check of foss/2023a module: True | |
| == 2024-04-22 10:37:37,482 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a/lib/R/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FriBidi/1.0.12-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HarfBuzz/5.3.1-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Tk/8.6.13-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/cURL/8.0.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgit2/1.7.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PCRE/8.45-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/Java/11.0.18/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LibTIFF/4.5.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libdeflate/1.18-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/jbigkit/2.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SQLite/3.42.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Tcl/8.6.13-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libreadline/8.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/cairo/1.17.8-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/GLib/2.77.1-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/PCRE2/10.42-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/gettext/0.21.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libffi/3.4.4-GCCcore-12.3.0/lib64:/home1/p251204/easybuildinstall/software/pixman/0.42.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libGLU/9.0.3-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Mesa/23.1.4-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LLVM/16.0.6-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libunwind/1.6.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libglvnd/1.6.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libdrm/2.4.115-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/zstd/1.5.5-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/lz4/1.9.4-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/X11/20230603-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/fontconfig/2.14.2-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/util-linux/2.39-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ncurses/6.4-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/freetype/2.13.0-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/Brotli/1.0.9-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/libpng/1.6.39-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/expat/2.5.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/bzip2/1.0.8-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW.MPI/3.3.10-gompi-2023a/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenBLAS/0.3.23-GCC-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenMPI/4.1.5-GCC-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/UCC/1.2.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PMIx/4.2.4-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libfabric/1.18.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/UCX/1.14.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libevent/2.1.12-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenSSL/1.1/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/hwloc/2.9.1-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/libpciaccess/0.17-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/libxml2/2.11.4-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/XZ/5.4.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/numactl/2.0.16-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/binutils/2.40-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/zlib/1.2.13-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/GCCcore/12.3.0/lib64:/.singularity.d/libs (previous value: 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| |
| == 2024-04-22 10:37:52,308 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to 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(previous value: 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| |
| == 2024-04-22 10:37:54,209 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Arrow/14.0.1-gfbf-2023a/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/utf8proc/2.8.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/RE2/2023-08-01-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/Abseil/20230125.3-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/snappy/1.1.10-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PostgreSQL/16.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/MPFR/4.2.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GDAL/3.7.1-foss-2023a/lib64:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenJPEG/2.5.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LERC/4.0.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Qhull/2020.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Brunsli/0.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Highway/1.0.4-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenEXR/3.1.7-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Imath/3.1.7-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Xerces-C++/3.2.4-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/json-c/0.16-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/giflib/5.2.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/CFITSIO/4.3.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Armadillo/12.6.2-foss-2023a/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/arpack-ng/3.9.0-foss-2023a/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Boost/1.82.0-GCC-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF/4.2.16-2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libtirpc/1.3.3-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages/numpy/core/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgeotiff/1.7.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PROJ/9.2.0-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/libarchive/3.6.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GEOS/3.12.0-GCC-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/netCDF/4.9.2-gompi-2023a/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python/3.11.3-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/nodejs/18.17.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GLPK/5.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ImageMagick/7.1.1-15-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LittleCMS/2.15-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/JasPer/4.0.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Ghostscript/10.01.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GTK3/3.24.37-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Wayland/1.22.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libepoxy/1.5.10-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Pango/1.50.14-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Gdk-Pixbuf/2.42.10-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/at-spi2-atk/2.38.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/at-spi2-core/2.49.91-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/DBus/1.15.4-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ATK/2.38.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GSL/2.7-GCC-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/UDUNITS/2.2.28-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF5/1.14.0-gompi-2023a/lib:/home1/p251204/easybuildinstall/software/Szip/2.1.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libsndfile/1.2.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LAME/3.100-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libopus/1.4-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libvorbis/1.3.7-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FLAC/1.4.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libogg/1.3.5-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/NLopt/2.7.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GMP/6.2.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a/lib/R/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FriBidi/1.0.12-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HarfBuzz/5.3.1-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Tk/8.6.13-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/cURL/8.0.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgit2/1.7.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PCRE/8.45-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/Java/11.0.18/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LibTIFF/4.5.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libdeflate/1.18-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/jbigkit/2.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SQLite/3.42.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Tcl/8.6.13-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libreadline/8.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/cairo/1.17.8-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/GLib/2.77.1-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/PCRE2/10.42-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/gettext/0.21.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libffi/3.4.4-GCCcore-12.3.0/lib64:/home1/p251204/easybuildinstall/software/pixman/0.42.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libGLU/9.0.3-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Mesa/23.1.4-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LLVM/16.0.6-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libunwind/1.6.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libglvnd/1.6.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libdrm/2.4.115-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/zstd/1.5.5-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/lz4/1.9.4-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/X11/20230603-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/fontconfig/2.14.2-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/util-linux/2.39-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ncurses/6.4-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/freetype/2.13.0-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/Brotli/1.0.9-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/libpng/1.6.39-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/expat/2.5.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/bzip2/1.0.8-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW.MPI/3.3.10-gompi-2023a/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenBLAS/0.3.23-GCC-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenMPI/4.1.5-GCC-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/UCC/1.2.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PMIx/4.2.4-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libfabric/1.18.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/UCX/1.14.1-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libevent/2.1.12-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenSSL/1.1/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/hwloc/2.9.1-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/libpciaccess/0.17-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/libxml2/2.11.4-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/XZ/5.4.2-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/numactl/2.0.16-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/binutils/2.40-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/zlib/1.2.13-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/GCCcore/12.3.0/lib64:/.singularity.d/libs (previous value: '/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Arrow/14.0.1-gfbf-2023a/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/utf8proc/2.8.0-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/RE2/2023-08-01-GCCcore-12.3.0/lib:/home1/p251204/easybuildinstall/software/Abseil/20230125.3-GCCcore-12.3.0/lib:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/snappy/1.1.10-GCCcore-12.3.0/lib:/.singularity.d/libs') | |
| == 2024-04-22 10:37:54,211 modules.py:626 INFO Checking whether foss/2023a exists... | |
| == 2024-04-22 10:37:54,211 modules.py:634 INFO Module foss/2023a not found in list of available modules, checking via 'module show'... | |
| == 2024-04-22 10:37:54,211 modules.py:654 INFO Result for existence check of foss/2023a module: True | |
| == 2024-04-22 10:37:54,214 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2024-04-22 10:37:54,215 compiler.py:339 INFO _set_optimal_architecture: no optarch found for compiler GCC. Ignoring option. | |
| == 2024-04-22 10:37:54,216 compiler.py:363 INFO _set_optimal_architecture: using march=native as optarch for x86_64/AMD. | |
| == 2024-04-22 10:37:56,242 variables.py:203 WARNING flags_for_subdirs: directory /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ScaLAPACK/2.2.0-gompi-2023a-fb/include was not found | |
| == 2024-04-22 10:37:57,593 variables.py:203 WARNING flags_for_subdirs: directory /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a/include was not found | |
| == 2024-04-22 10:37:58,435 variables.py:203 WARNING flags_for_subdirs: directory /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R-bundle-CRAN/2023.12-foss-2023a/include was not found | |
| == 2024-04-22 10:37:58,436 variables.py:203 WARNING flags_for_subdirs: directory /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R-bundle-CRAN/2023.12-foss-2023a/lib64 was not found | |
| == 2024-04-22 10:37:58,436 variables.py:203 WARNING flags_for_subdirs: directory /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R-bundle-CRAN/2023.12-foss-2023a/lib was not found | |
| == 2024-04-22 10:37:59,175 variables.py:203 WARNING flags_for_subdirs: directory /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2/include was not found | |
| == 2024-04-22 10:37:59,176 variables.py:203 WARNING flags_for_subdirs: directory /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2/lib64 was not found | |
| == 2024-04-22 10:37:59,176 variables.py:203 WARNING flags_for_subdirs: directory /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R-bundle-Bioconductor/3.18-foss-2023a-R-4.3.2/lib was not found | |
| == 2024-04-22 10:37:59,179 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) | |
| == 2024-04-22 10:37:59,180 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) | |
| == 2024-04-22 10:37:59,180 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) | |
| == 2024-04-22 10:37:59,180 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) | |
| == 2024-04-22 10:37:59,180 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) | |
| == 2024-04-22 10:37:59,180 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) | |
| == 2024-04-22 10:37:59,180 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-04-22 10:37:59,180 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-04-22 10:37:59,180 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-04-22 10:37:59,180 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-04-22 10:37:59,180 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-04-22 10:37:59,181 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-04-22 10:37:59,181 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-04-22 10:37:59,181 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-04-22 10:37:59,181 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) | |
| == 2024-04-22 10:37:59,181 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) | |
| == 2024-04-22 10:37:59,181 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-04-22 10:37:59,181 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-04-22 10:37:59,181 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-04-22 10:37:59,181 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-04-22 10:37:59,181 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-04-22 10:37:59,181 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-04-22 10:37:59,181 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-04-22 10:37:59,182 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-04-22 10:37:59,182 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) | |
| == 2024-04-22 10:37:59,182 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) | |
| == 2024-04-22 10:37:59,182 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2024-04-22 10:37:59,182 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2024-04-22 10:37:59,182 environment.py:93 INFO Environment variable CPPFLAGS set to -I/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/include -I/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) | |
| == 2024-04-22 10:37:59,182 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/include -I/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/include -I/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) | |
| == 2024-04-22 10:37:59,182 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) | |
| == 2024-04-22 10:37:59,182 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) | |
| == 2024-04-22 10:37:59,182 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2024-04-22 10:37:59,182 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2024-04-22 10:37:59,182 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) | |
| == 2024-04-22 10:37:59,183 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) | |
| == 2024-04-22 10:37:59,183 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) | |
| == 2024-04-22 10:37:59,183 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) | |
| == 2024-04-22 10:37:59,183 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2024-04-22 10:37:59,183 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2024-04-22 10:37:59,183 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) | |
| == 2024-04-22 10:37:59,183 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) | |
| == 2024-04-22 10:37:59,183 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2024-04-22 10:37:59,183 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2024-04-22 10:37:59,183 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2024-04-22 10:37:59,183 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2024-04-22 10:37:59,183 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) | |
| == 2024-04-22 10:37:59,183 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) | |
| == 2024-04-22 10:37:59,184 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) | |
| == 2024-04-22 10:37:59,184 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) | |
| == 2024-04-22 10:37:59,184 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) | |
| == 2024-04-22 10:37:59,184 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) | |
| == 2024-04-22 10:37:59,184 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) | |
| == 2024-04-22 10:37:59,184 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) | |
| == 2024-04-22 10:37:59,184 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2024-04-22 10:37:59,184 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2024-04-22 10:37:59,184 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2024-04-22 10:37:59,184 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2024-04-22 10:37:59,184 environment.py:93 INFO Environment variable FFT_INC_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) | |
| == 2024-04-22 10:37:59,184 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/include (previously undefined) | |
| == 2024-04-22 10:37:59,185 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) | |
| == 2024-04-22 10:37:59,185 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/lib (previously undefined) | |
| == 2024-04-22 10:37:59,185 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) | |
| == 2024-04-22 10:37:59,185 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) | |
| == 2024-04-22 10:37:59,185 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) | |
| == 2024-04-22 10:37:59,185 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) | |
| == 2024-04-22 10:37:59,185 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2024-04-22 10:37:59,185 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2024-04-22 10:37:59,185 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2024-04-22 10:37:59,185 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2024-04-22 10:37:59,185 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2024-04-22 10:37:59,185 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2024-04-22 10:37:59,186 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) | |
| == 2024-04-22 10:37:59,186 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas (previously undefined) | |
| == 2024-04-22 10:37:59,186 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) | |
| == 2024-04-22 10:37:59,186 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib (previously undefined) | |
| == 2024-04-22 10:37:59,186 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-04-22 10:37:59,186 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-04-22 10:37:59,186 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-04-22 10:37:59,186 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-04-22 10:37:59,186 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-04-22 10:37:59,186 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-04-22 10:37:59,186 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-04-22 10:37:59,187 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-04-22 10:37:59,187 environment.py:93 INFO Environment variable LDFLAGS set to -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a/lib64 -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a/lib -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/lib -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/home1/p251204/easybuildinstall/software/GCCcore/12.3.0/lib64 -L/home1/p251204/easybuildinstall/software/GCCcore/12.3.0/lib (previously undefined) | |
| == 2024-04-22 10:37:59,187 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a/lib64 -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a/lib -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/lib64 -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/lib -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64 -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64 -L/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib -L/home1/p251204/easybuildinstall/software/GCCcore/12.3.0/lib64 -L/home1/p251204/easybuildinstall/software/GCCcore/12.3.0/lib (previously undefined) | |
| == 2024-04-22 10:37:59,187 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-04-22 10:37:59,187 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-04-22 10:37:59,187 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-04-22 10:37:59,187 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-04-22 10:37:59,187 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) | |
| == 2024-04-22 10:37:59,187 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) | |
| == 2024-04-22 10:37:59,187 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2024-04-22 10:37:59,187 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2024-04-22 10:37:59,187 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-04-22 10:37:59,188 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-04-22 10:37:59,188 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-04-22 10:37:59,188 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-04-22 10:37:59,188 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-04-22 10:37:59,188 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-04-22 10:37:59,188 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-04-22 10:37:59,188 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-04-22 10:37:59,188 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
| == 2024-04-22 10:37:59,188 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
| == 2024-04-22 10:37:59,188 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) | |
| == 2024-04-22 10:37:59,188 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) | |
| == 2024-04-22 10:37:59,188 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-04-22 10:37:59,189 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-04-22 10:37:59,189 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2024-04-22 10:37:59,189 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2024-04-22 10:37:59,189 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2024-04-22 10:37:59,189 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2024-04-22 10:37:59,189 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) | |
| == 2024-04-22 10:37:59,189 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) | |
| == 2024-04-22 10:37:59,189 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) | |
| == 2024-04-22 10:37:59,189 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) | |
| == 2024-04-22 10:37:59,189 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) | |
| == 2024-04-22 10:37:59,189 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) | |
| == 2024-04-22 10:37:59,189 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) | |
| == 2024-04-22 10:37:59,190 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) | |
| == 2024-04-22 10:37:59,190 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) | |
| == 2024-04-22 10:37:59,190 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) | |
| == 2024-04-22 10:37:59,190 environment.py:93 INFO Environment variable MPI_INC_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenMPI/4.1.5-GCC-12.3.0/include (previously undefined) | |
| == 2024-04-22 10:37:59,190 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenMPI/4.1.5-GCC-12.3.0/include (previously undefined) | |
| == 2024-04-22 10:37:59,190 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previously undefined) | |
| == 2024-04-22 10:37:59,190 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previously undefined) | |
| == 2024-04-22 10:37:59,190 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previously undefined) | |
| == 2024-04-22 10:37:59,190 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previously undefined) | |
| == 2024-04-22 10:37:59,190 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) | |
| == 2024-04-22 10:37:59,190 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) | |
| == 2024-04-22 10:37:59,190 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) | |
| == 2024-04-22 10:37:59,191 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) | |
| == 2024-04-22 10:37:59,191 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) | |
| == 2024-04-22 10:37:59,191 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) | |
| == 2024-04-22 10:37:59,191 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) | |
| == 2024-04-22 10:37:59,191 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) | |
| == 2024-04-22 10:37:59,191 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) | |
| == 2024-04-22 10:37:59,191 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) | |
| == 2024-04-22 10:37:59,191 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) | |
| == 2024-04-22 10:37:59,191 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) | |
| == 2024-04-22 10:37:59,191 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2024-04-22 10:37:59,191 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2024-04-22 10:37:59,191 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2024-04-22 10:37:59,191 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2024-04-22 10:37:59,192 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) | |
| == 2024-04-22 10:37:59,192 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) | |
| == 2024-04-22 10:37:59,192 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previously undefined) | |
| == 2024-04-22 10:37:59,192 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previously undefined) | |
| == 2024-04-22 10:37:59,192 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-04-22 10:37:59,192 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-04-22 10:37:59,192 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-04-22 10:37:59,192 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-04-22 10:37:59,192 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-04-22 10:37:59,192 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-04-22 10:37:59,192 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-04-22 10:37:59,192 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-04-22 10:37:59,193 toolchain.py:961 INFO Putting RPATH wrappers in place... | |
| == 2024-04-22 10:37:59,304 filetools.py:526 INFO Command gcc found at /home1/p251204/easybuildinstall/software/GCCcore/12.3.0/bin/gcc | |
| == 2024-04-22 10:37:59,305 filetools.py:1912 INFO Creating directory /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gcc_wrapper (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:59,305 filetools.py:1764 INFO Adjusting permissions recursively for /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gcc_wrapper/gcc | |
| == 2024-04-22 10:37:59,305 environment.py:93 INFO Environment variable PATH set to /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gcc_wrapper:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PostgreSQL/16.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GDAL/3.7.1-foss-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SWIG/4.1.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenJPEG/2.5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Qhull/2020.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Brunsli/0.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenEXR/3.1.7-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Xerces-C++/3.2.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/giflib/5.2.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/CFITSIO/4.3.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF/4.2.16-2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgeotiff/1.7.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PROJ/9.2.0-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GEOS/3.12.0-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/netCDF/4.9.2-gompi-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/nodejs/18.17.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GLPK/5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ImageMagick/7.1.1-15-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LittleCMS/2.15-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/JasPer/4.0.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Ghostscript/10.01.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GTK3/3.24.37-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Wayland/1.22.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Pango/1.50.14-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Gdk-Pixbuf/2.42.10-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/DBus/1.15.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GSL/2.7-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/UDUNITS/2.2.28-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF5/1.14.0-gompi-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libsndfile/1.2.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LAME/3.100-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FLAC/1.4.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FriBidi/1.0.12-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HarfBuzz/5.3.1-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/sbin:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Tk/8.6.13-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/cURL/8.0.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgit2/1.7.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PCRE/8.45-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/Java/11.0.18:/home1/p251204/easybuildinstall/software/Java/11.0.18/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libdeflate/1.18-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x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(previous value: 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| |
| == 2024-04-22 10:37:59,306 filetools.py:526 INFO Command gcc found at /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gcc_wrapper/gcc | |
| == 2024-04-22 10:37:59,306 toolchain.py:1045 INFO RPATH wrapper script for /home1/p251204/easybuildinstall/software/GCCcore/12.3.0/bin/gcc: /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gcc_wrapper/gcc (log: /dev/null) | |
| == 2024-04-22 10:37:59,315 filetools.py:526 INFO Command g++ found at /home1/p251204/easybuildinstall/software/GCCcore/12.3.0/bin/g++ | |
| == 2024-04-22 10:37:59,316 filetools.py:1912 INFO Creating directory /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gxx_wrapper (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:59,316 filetools.py:1764 INFO Adjusting permissions recursively for /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gxx_wrapper/g++ | |
| == 2024-04-22 10:37:59,316 environment.py:93 INFO Environment variable PATH set to /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gxx_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gcc_wrapper:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PostgreSQL/16.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GDAL/3.7.1-foss-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SWIG/4.1.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenJPEG/2.5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Qhull/2020.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Brunsli/0.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenEXR/3.1.7-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Xerces-C++/3.2.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/giflib/5.2.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/CFITSIO/4.3.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF/4.2.16-2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgeotiff/1.7.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PROJ/9.2.0-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GEOS/3.12.0-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/netCDF/4.9.2-gompi-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/nodejs/18.17.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GLPK/5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ImageMagick/7.1.1-15-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LittleCMS/2.15-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/JasPer/4.0.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Ghostscript/10.01.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GTK3/3.24.37-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Wayland/1.22.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Pango/1.50.14-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Gdk-Pixbuf/2.42.10-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/DBus/1.15.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GSL/2.7-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/UDUNITS/2.2.28-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF5/1.14.0-gompi-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libsndfile/1.2.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LAME/3.100-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FLAC/1.4.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FriBidi/1.0.12-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HarfBuzz/5.3.1-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/sbin:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Tk/8.6.13-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/cURL/8.0.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgit2/1.7.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PCRE/8.45-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/Java/11.0.18:/home1/p251204/easybuildinstall/software/Java/11.0.18/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libde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(previous value: 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| |
| == 2024-04-22 10:37:59,316 filetools.py:526 INFO Command g++ found at /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gxx_wrapper/g++ | |
| == 2024-04-22 10:37:59,316 toolchain.py:1045 INFO RPATH wrapper script for /home1/p251204/easybuildinstall/software/GCCcore/12.3.0/bin/g++: /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gxx_wrapper/g++ (log: /dev/null) | |
| == 2024-04-22 10:37:59,331 filetools.py:526 INFO Command gfortran found at /home1/p251204/easybuildinstall/software/GCCcore/12.3.0/bin/gfortran | |
| == 2024-04-22 10:37:59,331 filetools.py:1912 INFO Creating directory /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gfortran_wrapper (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:59,332 filetools.py:1764 INFO Adjusting permissions recursively for /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gfortran_wrapper/gfortran | |
| == 2024-04-22 10:37:59,332 environment.py:93 INFO Environment variable PATH set to /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gfortran_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gxx_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gcc_wrapper:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PostgreSQL/16.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GDAL/3.7.1-foss-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SWIG/4.1.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenJPEG/2.5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Qhull/2020.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Brunsli/0.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenEXR/3.1.7-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Xerces-C++/3.2.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/giflib/5.2.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/CFITSIO/4.3.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF/4.2.16-2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgeotiff/1.7.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PROJ/9.2.0-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GEOS/3.12.0-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/netCDF/4.9.2-gompi-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/nodejs/18.17.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GLPK/5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ImageMagick/7.1.1-15-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LittleCMS/2.15-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/JasPer/4.0.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Ghostscript/10.01.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GTK3/3.24.37-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Wayland/1.22.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Pango/1.50.14-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Gdk-Pixbuf/2.42.10-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/DBus/1.15.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GSL/2.7-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/UDUNITS/2.2.28-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF5/1.14.0-gompi-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libsndfile/1.2.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LAME/3.100-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FLAC/1.4.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FriBidi/1.0.12-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HarfBuzz/5.3.1-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/sbin:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Tk/8.6.13-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/cURL/8.0.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgit2/1.7.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PCRE/8.45-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/Java/11.0.18:/home1/p251204/easybuildinstall/software/Java/11.0.18/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LibTIFF/4.5.0-GCCcore-12.3.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(previous value: 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| |
| == 2024-04-22 10:37:59,332 filetools.py:526 INFO Command gfortran found at /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gfortran_wrapper/gfortran | |
| == 2024-04-22 10:37:59,332 toolchain.py:1045 INFO RPATH wrapper script for /home1/p251204/easybuildinstall/software/GCCcore/12.3.0/bin/gfortran: /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gfortran_wrapper/gfortran (log: /dev/null) | |
| == 2024-04-22 10:37:59,341 filetools.py:526 INFO Command ld found at /home1/p251204/easybuildinstall/software/binutils/2.40-GCCcore-12.3.0/bin/ld | |
| == 2024-04-22 10:37:59,342 filetools.py:1912 INFO Creating directory /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld_wrapper (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:59,342 filetools.py:1764 INFO Adjusting permissions recursively for /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld_wrapper/ld | |
| == 2024-04-22 10:37:59,342 environment.py:93 INFO Environment variable PATH set to /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gfortran_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gxx_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gcc_wrapper:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PostgreSQL/16.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GDAL/3.7.1-foss-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SWIG/4.1.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenJPEG/2.5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Qhull/2020.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Brunsli/0.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenEXR/3.1.7-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Xerces-C++/3.2.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/giflib/5.2.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/CFITSIO/4.3.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF/4.2.16-2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgeotiff/1.7.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PROJ/9.2.0-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GEOS/3.12.0-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/netCDF/4.9.2-gompi-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/nodejs/18.17.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GLPK/5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ImageMagick/7.1.1-15-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LittleCMS/2.15-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/JasPer/4.0.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Ghostscript/10.01.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GTK3/3.24.37-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Wayland/1.22.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Pango/1.50.14-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Gdk-Pixbuf/2.42.10-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/DBus/1.15.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GSL/2.7-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/UDUNITS/2.2.28-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF5/1.14.0-gompi-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libsndfile/1.2.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LAME/3.100-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FLAC/1.4.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FriBidi/1.0.12-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HarfBuzz/5.3.1-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/sbin:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Tk/8.6.13-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/cURL/8.0.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgit2/1.7.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PCRE/8.45-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/Java/11.0.18:/home1/p251204/easybuildinstall/software/Java/11.0.18/bin:/cvmfs/hpc.rug.nl/vers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(previous value: 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| |
| == 2024-04-22 10:37:59,343 filetools.py:526 INFO Command ld found at /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld_wrapper/ld | |
| == 2024-04-22 10:37:59,343 toolchain.py:1045 INFO RPATH wrapper script for /home1/p251204/easybuildinstall/software/binutils/2.40-GCCcore-12.3.0/bin/ld: /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld_wrapper/ld (log: /dev/null) | |
| == 2024-04-22 10:37:59,351 filetools.py:526 INFO Command ld.gold found at /home1/p251204/easybuildinstall/software/binutils/2.40-GCCcore-12.3.0/bin/ld.gold | |
| == 2024-04-22 10:37:59,352 filetools.py:1912 INFO Creating directory /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld.gold_wrapper (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:59,352 filetools.py:1764 INFO Adjusting permissions recursively for /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld.gold_wrapper/ld.gold | |
| == 2024-04-22 10:37:59,352 environment.py:93 INFO Environment variable PATH set to /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld.gold_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gfortran_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gxx_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gcc_wrapper:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PostgreSQL/16.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GDAL/3.7.1-foss-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SWIG/4.1.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenJPEG/2.5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Qhull/2020.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Brunsli/0.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenEXR/3.1.7-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Xerces-C++/3.2.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/giflib/5.2.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/CFITSIO/4.3.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF/4.2.16-2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgeotiff/1.7.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PROJ/9.2.0-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GEOS/3.12.0-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/netCDF/4.9.2-gompi-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/nodejs/18.17.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GLPK/5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ImageMagick/7.1.1-15-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LittleCMS/2.15-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/JasPer/4.0.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Ghostscript/10.01.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GTK3/3.24.37-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Wayland/1.22.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Pango/1.50.14-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Gdk-Pixbuf/2.42.10-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/DBus/1.15.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GSL/2.7-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/UDUNITS/2.2.28-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF5/1.14.0-gompi-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libsndfile/1.2.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LAME/3.100-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FLAC/1.4.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FriBidi/1.0.12-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HarfBuzz/5.3.1-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/sbin:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Tk/8.6.13-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/cURL/8.0.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgit2/1.7.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PCRE/8.45-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/Java/11.0.18:/ho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(previous value: 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| |
| == 2024-04-22 10:37:59,352 filetools.py:526 INFO Command ld.gold found at /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld.gold_wrapper/ld.gold | |
| == 2024-04-22 10:37:59,353 toolchain.py:1045 INFO RPATH wrapper script for /home1/p251204/easybuildinstall/software/binutils/2.40-GCCcore-12.3.0/bin/ld.gold: /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld.gold_wrapper/ld.gold (log: /dev/null) | |
| == 2024-04-22 10:37:59,361 filetools.py:526 INFO Command ld.bfd found at /home1/p251204/easybuildinstall/software/binutils/2.40-GCCcore-12.3.0/bin/ld.bfd | |
| == 2024-04-22 10:37:59,362 filetools.py:1912 INFO Creating directory /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld.bfd_wrapper (parents: True, set_gid: False, sticky: False) | |
| == 2024-04-22 10:37:59,362 filetools.py:1764 INFO Adjusting permissions recursively for /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld.bfd_wrapper/ld.bfd | |
| == 2024-04-22 10:37:59,362 environment.py:93 INFO Environment variable PATH set to /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld.bfd_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld.gold_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gfortran_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gxx_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gcc_wrapper:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PostgreSQL/16.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GDAL/3.7.1-foss-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SWIG/4.1.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenJPEG/2.5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Qhull/2020.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Brunsli/0.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenEXR/3.1.7-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Xerces-C++/3.2.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/giflib/5.2.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/CFITSIO/4.3.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF/4.2.16-2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgeotiff/1.7.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PROJ/9.2.0-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GEOS/3.12.0-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/netCDF/4.9.2-gompi-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/nodejs/18.17.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GLPK/5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ImageMagick/7.1.1-15-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LittleCMS/2.15-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/JasPer/4.0.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Ghostscript/10.01.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GTK3/3.24.37-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Wayland/1.22.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Pango/1.50.14-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Gdk-Pixbuf/2.42.10-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/DBus/1.15.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GSL/2.7-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/UDUNITS/2.2.28-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF5/1.14.0-gompi-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libsndfile/1.2.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LAME/3.100-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FLAC/1.4.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FriBidi/1.0.12-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HarfBuzz/5.3.1-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/sbin:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Tk/8.6.13-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/cURL/8.0.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgit2/1.7.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PCRE/8.45-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(previous value: '/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld.gold_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gfortran_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gxx_wrapper:/tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/gcc_wrapper:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PostgreSQL/16.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GDAL/3.7.1-foss-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SWIG/4.1.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenJPEG/2.5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Qhull/2020.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Brunsli/0.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenEXR/3.1.7-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Xerces-C++/3.2.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/giflib/5.2.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/CFITSIO/4.3.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF/4.2.16-2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgeotiff/1.7.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PROJ/9.2.0-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/libarchive/3.6.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GEOS/3.12.0-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/netCDF/4.9.2-gompi-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/nodejs/18.17.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GLPK/5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ImageMagick/7.1.1-15-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LittleCMS/2.15-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/JasPer/4.0.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Ghostscript/10.01.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GTK3/3.24.37-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Wayland/1.22.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Pango/1.50.14-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Gdk-Pixbuf/2.42.10-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/DBus/1.15.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/GSL/2.7-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/UDUNITS/2.2.28-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HDF5/1.14.0-gompi-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libsndfile/1.2.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LAME/3.100-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FLAC/1.4.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/R/4.3.2-gfbf-2023a/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FriBidi/1.0.12-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/HarfBuzz/5.3.1-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/sbin:/home1/p251204/easybuildinstall/software/ICU/73.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Tk/8.6.13-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/cURL/8.0.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libgit2/1.7.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PCRE/8.45-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/Java/11.0.18:/home1/p251204/easybuildinstall/software/Java/11.0.18/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libdeflate/1.18-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/jbigkit/2.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/NASM/2.16.01-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/cairo/1.17.8-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/GLib/2.77.1-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/PCRE2/10.42-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/gettext/0.21.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/LLVM/16.0.6-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/zstd/1.5.5-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/lz4/1.9.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/gzip/1.12-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/X11/20230603-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/util-linux/2.39-GCCcore-12.3.0/sbin:/home1/p251204/easybuildinstall/software/util-linux/2.39-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/ncurses/6.4-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/freetype/2.13.0-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/libpng/1.6.39-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/expat/2.5.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FFTW/3.3.10-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/UCC/1.2.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/UCX/1.14.1-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/libevent/2.1.12-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/OpenSSL/1.1/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/XZ/5.4.2-GCCcore-12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/numactl/2.0.16-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/binutils/2.40-GCCcore-12.3.0/bin:/home1/p251204/easybuildinstall/software/GCCcore/12.3.0/bin:/cvmfs/hpc.rug.nl/versions/2023.01/rocky8/x86_64/amd/zen3/software/EasyBuild/4.9.1/bin:/home1/p251204/bin:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin') | |
| == 2024-04-22 10:37:59,362 filetools.py:526 INFO Command ld.bfd found at /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld.bfd_wrapper/ld.bfd | |
| == 2024-04-22 10:37:59,362 toolchain.py:1045 INFO RPATH wrapper script for /home1/p251204/easybuildinstall/software/binutils/2.40-GCCcore-12.3.0/bin/ld.bfd: /tmp/eb_install.kHBfs/eb-3z_12294/tmpgb4rnmiy/rpath_wrappers/ld.bfd_wrapper/ld.bfd (log: /dev/null) | |
| == 2024-04-22 10:37:59,363 easyblock.py:2142 INFO Using /dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2/chromVARmotifs-38bed559c1f4770b6c91c80bf3f8ea965da26076/ as start dir | |
| == 2024-04-22 10:37:59,363 build_log.py:267 INFO ... (took 35 secs) | |
| == 2024-04-22 10:37:59,366 build_log.py:267 INFO configuring... | |
| == 2024-04-22 10:37:59,368 easyblock.py:3956 INFO Starting configure step | |
| == 2024-04-22 10:37:59,368 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-04-22 10:37:59,369 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-04-22 10:37:59,369 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-04-22 10:37:59,369 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='chromvarmotifs', builddir='/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='chromvarmotifs', installdir='/home1/p251204/easybuildinstall/software/chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', module_name='chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', mpi_cmd_prefix='mpirun -n 1', name='chromVARmotifs', nameletter='c', nameletterlower='c', namelower='chromvarmotifs', parallel='60', rmajver='4', rminver='3', rshortver='4.3', rver='4.3.2', start_dir='/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2/chromVARmotifs-38bed559c1f4770b6c91c80bf3f8ea965da26076/', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.3.2' | |
| == 2024-04-22 10:37:59,369 hooks.py:205 INFO Found pre_configure_hook hook | |
| == 2024-04-22 10:37:59,369 hooks.py:239 INFO Running 'pre_configure_hook' hook function (args: [<easybuild.easyblocks.generic.rpackage.RPackage object at 0x7ff63834c550>], keyword args: {})... | |
| == 2024-04-22 10:37:59,369 easyblock.py:3964 INFO Running method configure_step part of step configure | |
| == 2024-04-22 10:37:59,369 build_log.py:267 INFO building... | |
| == 2024-04-22 10:37:59,371 easyblock.py:3956 INFO Starting build step | |
| == 2024-04-22 10:37:59,371 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-04-22 10:37:59,371 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-04-22 10:37:59,372 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-04-22 10:37:59,372 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='chromvarmotifs', builddir='/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='chromvarmotifs', installdir='/home1/p251204/easybuildinstall/software/chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', module_name='chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', mpi_cmd_prefix='mpirun -n 1', name='chromVARmotifs', nameletter='c', nameletterlower='c', namelower='chromvarmotifs', parallel='60', rmajver='4', rminver='3', rshortver='4.3', rver='4.3.2', start_dir='/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2/chromVARmotifs-38bed559c1f4770b6c91c80bf3f8ea965da26076/', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.3.2' | |
| == 2024-04-22 10:37:59,372 easyblock.py:3964 INFO Running method build_step part of step build | |
| == 2024-04-22 10:37:59,372 build_log.py:267 INFO testing... | |
| == 2024-04-22 10:37:59,374 easyblock.py:3956 INFO Starting test step | |
| == 2024-04-22 10:37:59,374 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-04-22 10:37:59,374 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-04-22 10:37:59,374 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-04-22 10:37:59,374 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='chromvarmotifs', builddir='/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='chromvarmotifs', installdir='/home1/p251204/easybuildinstall/software/chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', module_name='chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', mpi_cmd_prefix='mpirun -n 1', name='chromVARmotifs', nameletter='c', nameletterlower='c', namelower='chromvarmotifs', parallel='60', rmajver='4', rminver='3', rshortver='4.3', rver='4.3.2', start_dir='/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2/chromVARmotifs-38bed559c1f4770b6c91c80bf3f8ea965da26076/', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.3.2' | |
| == 2024-04-22 10:37:59,374 easyblock.py:3964 INFO Running method test_step part of step test | |
| == 2024-04-22 10:37:59,375 build_log.py:267 INFO installing... | |
| == 2024-04-22 10:37:59,376 easyblock.py:3956 INFO Starting install step | |
| == 2024-04-22 10:37:59,377 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-04-22 10:37:59,377 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-04-22 10:37:59,377 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-04-22 10:37:59,377 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='chromvarmotifs', builddir='/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='chromvarmotifs', installdir='/home1/p251204/easybuildinstall/software/chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', module_name='chromVARmotifs/0.2.0-foss-2023a-R-4.3.2', mpi_cmd_prefix='mpirun -n 1', name='chromVARmotifs', nameletter='c', nameletterlower='c', namelower='chromvarmotifs', parallel='60', rmajver='4', rminver='3', rshortver='4.3', rver='4.3.2', start_dir='/dev/shm/p251204/chromVARmotifs/0.2.0/foss-2023a-R-4.3.2/chromVARmotifs-38bed559c1f4770b6c91c80bf3f8ea965da26076/', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='0.2.0', version_major='0', version_major_minor='0.2', version_minor='2', versionprefix='', versionsuffix='-R-4.3.2' | |
| == 2024-04-22 10:37:59,377 hooks.py:205 INFO Found pre_install_hook hook | |
| == 2024-04-22 10:37:59,377 hooks.py:239 INFO Running 'pre_install_hook' hook function (args: [<easybuild.easyblocks.generic.rpackage.RPackage object at 0x7ff63834c550>], keyword args: {})... | |
| == 2024-04-22 10:37:59,774 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:126 in __init__): Existing Makevars file found in /home1/p251204/.R, please remove it! (at easybuild/cit-hpc-easybuild/hooks/habrok.py:228 in add_symlink_to_original_R_makevars) | |
| == 2024-04-22 10:37:59,774 filetools.py:2013 INFO Removing lock /home1/p251204/easybuildinstall/software/.locks/_home1_p251204_easybuildinstall_software_chromVARmotifs_0.2.0-foss-2023a-R-4.3.2.lock... | |
| == 2024-04-22 10:37:59,778 filetools.py:383 INFO Path /home1/p251204/easybuildinstall/software/.locks/_home1_p251204_easybuildinstall_software_chromVARmotifs_0.2.0-foss-2023a-R-4.3.2.lock successfully removed. | |
| == 2024-04-22 10:37:59,778 filetools.py:2017 INFO Lock removed: /home1/p251204/easybuildinstall/software/.locks/_home1_p251204_easybuildinstall_software_chromVARmotifs_0.2.0-foss-2023a-R-4.3.2.lock | |
| == 2024-04-22 10:37:59,778 easyblock.py:4291 WARNING build failed (first 300 chars): Existing Makevars file found in /home1/p251204/.R, please remove it! | |
| == 2024-04-22 10:37:59,779 easyblock.py:328 INFO Closing log for application name chromVARmotifs version 0.2.0 |
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