Created
October 20, 2020 08:56
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(partial) EasyBuild log for failed build of /local/tmp/f115261/eb-UAGL56/files_pr10558/h/HMMER/HMMER-3.3.1-GCCcore-9.3.0.eb (PR #10558)
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| == 2020-10-20 10:52:04,307 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-20 10:52:04,348 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /software/software/GCCcore/9.3.0/lib/gcc/x86_64-pc-linux-gnu/9.3.0:/software/software/GCCcore/9.3.0/lib64:/software/software/GCCcore/9.3.0/lib (previous value: '/software/software/GCCcore/9.3.0/lib/gcc/x86_64-pc-linux-gnu/9.3.0:/software/software/GCCcore/9.3.0/lib64:/software/software/GCCcore/9.3.0/lib') | |
| == 2020-10-20 10:52:04,348 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-20 10:52:04,948 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /software/software/binutils/2.34-GCCcore-9.3.0/lib:/software/software/zlib/1.2.11-GCCcore-9.3.0/lib:/software/software/GCCcore/9.3.0/lib/gcc/x86_64-pc-linux-gnu/9.3.0:/software/software/GCCcore/9.3.0/lib64:/software/software/GCCcore/9.3.0/lib (previous value: '/software/software/binutils/2.34-GCCcore-9.3.0/lib:/software/software/zlib/1.2.11-GCCcore-9.3.0/lib') | |
| == 2020-10-20 10:52:04,949 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-20 10:52:04,949 modules.py:606 INFO Checking whether GCCcore/9.3.0 exists... | |
| == 2020-10-20 10:52:04,949 modules.py:614 INFO Module GCCcore/9.3.0 not found in list of available modules, checking via 'module show'... | |
| == 2020-10-20 10:52:04,949 modules.py:634 INFO Result for existence check of GCCcore/9.3.0 module: True | |
| == 2020-10-20 10:52:04,950 toolchain.py:756 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2020-10-20 10:52:04,953 compiler.py:347 INFO _set_optimal_architecture: using march=native as optarch for x86_64. | |
| == 2020-10-20 10:52:04,956 variables.py:201 WARNING flags_for_subdirs: directory /software/software/binutils/2.34-GCCcore-9.3.0/lib64 was not found | |
| == 2020-10-20 10:52:04,957 environment.py:97 INFO Environment variable CC set to gcc (previously undefined) | |
| == 2020-10-20 10:52:04,957 environment.py:97 INFO Environment variable EBVARCC set to gcc (previously undefined) | |
| == 2020-10-20 10:52:04,957 environment.py:97 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2020-10-20 10:52:04,957 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2020-10-20 10:52:04,957 environment.py:97 INFO Environment variable CPPFLAGS set to -I/software/software/binutils/2.34-GCCcore-9.3.0/include (previously undefined) | |
| == 2020-10-20 10:52:04,957 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/software/software/binutils/2.34-GCCcore-9.3.0/include (previously undefined) | |
| == 2020-10-20 10:52:04,957 environment.py:97 INFO Environment variable CXX set to g++ (previously undefined) | |
| == 2020-10-20 10:52:04,957 environment.py:97 INFO Environment variable EBVARCXX set to g++ (previously undefined) | |
| == 2020-10-20 10:52:04,957 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2020-10-20 10:52:04,957 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2020-10-20 10:52:04,957 environment.py:97 INFO Environment variable F77 set to gfortran (previously undefined) | |
| == 2020-10-20 10:52:04,957 environment.py:97 INFO Environment variable EBVARF77 set to gfortran (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable F90 set to gfortran (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable EBVARF90 set to gfortran (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable FC set to gfortran (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable EBVARFC set to gfortran (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -march=native -fno-math-errno (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable LDFLAGS set to -L/software/software/binutils/2.34-GCCcore-9.3.0/lib -L/software/software/GCCcore/9.3.0/lib64 -L/software/software/GCCcore/9.3.0/lib (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/software/software/binutils/2.34-GCCcore-9.3.0/lib -L/software/software/GCCcore/9.3.0/lib64 -L/software/software/GCCcore/9.3.0/lib (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
| == 2020-10-20 10:52:04,958 environment.py:97 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
| == 2020-10-20 10:52:04,959 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2020-10-20 10:52:04,959 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2020-10-20 10:52:04,959 environment.py:97 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2020-10-20 10:52:04,959 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2020-10-20 10:52:04,959 easyblock.py:1610 INFO Using /local/tmp/f115261/HMMER/3.3.1/GCCcore-9.3.0/hmmer-3.3.1/ as start dir | |
| == 2020-10-20 10:52:04,959 build_log.py:265 INFO configuring... | |
| == 2020-10-20 10:52:04,959 easyblock.py:3033 INFO Starting configure step | |
| == 2020-10-20 10:52:04,959 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-20 10:52:04,959 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='hmmer', builddir='/local/tmp/f115261/HMMER/3.3.1/GCCcore-9.3.0', github_account='hmmer', installdir='/home/f115261/easybuildinstall/software/HMMER/3.3.1-GCCcore-9.3.0', name='HMMER', nameletter='H', nameletterlower='h', namelower='hmmer', parallel='2', toolchain_name='GCCcore', toolchain_version='9.3.0', version='3.3.1', version_major='3', version_major_minor='3.3', version_minor='3', versionprefix='', versionsuffix='' | |
| == 2020-10-20 10:52:04,959 hooks.py:167 INFO Found pre_configure_hook hook | |
| == 2020-10-20 10:52:04,960 hooks.py:199 INFO Running 'pre_configure_hook' hook function (arguments: [<easybuild.easyblocks.generic.configuremake.ConfigureMake object at 0x335f310>])... | |
| == 2020-10-20 10:52:04,960 easyblock.py:3039 INFO Running method configure_step part of step configure | |
| == 2020-10-20 10:52:04,961 configuremake.py:93 INFO config.guess version: 2018-08-29 (last updated: 2020-09-22T11:13:30, SHA256 checksum: c02eb9cc55c86cfd1e9a794e548d25db5c9539e7b2154beb649bc6e2cbffc74c) | |
| == 2020-10-20 10:52:04,961 run.py:222 INFO running cmd: /apps/.local/sources/generic/eb_v4.3.0/ConfigureMake/config.guess | |
| == 2020-10-20 10:52:06,980 run.py:538 INFO cmd "/apps/.local/sources/generic/eb_v4.3.0/ConfigureMake/config.guess" exited with exit code 0 and output: | |
| x86_64-pc-linux-gnu | |
| == 2020-10-20 10:52:06,980 configuremake.py:243 INFO /apps/.local/sources/generic/eb_v4.3.0/ConfigureMake/config.guess returned a system type 'x86_64-pc-linux-gnu' | |
| == 2020-10-20 10:52:06,980 configuremake.py:247 INFO Providing 'x86_64-pc-linux-gnu' as value to --build option of configure script | |
| == 2020-10-20 10:52:06,980 configuremake.py:251 INFO Providing 'x86_64-pc-linux-gnu' as value to --host option of configure script | |
| == 2020-10-20 10:52:06,980 run.py:222 INFO running cmd: ./configure --prefix=/home/f115261/easybuildinstall/software/HMMER/3.3.1-GCCcore-9.3.0 --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu | |
| == 2020-10-20 10:52:19,483 run.py:538 INFO cmd " ./configure --prefix=/home/f115261/easybuildinstall/software/HMMER/3.3.1-GCCcore-9.3.0 --build=x86_64-pc-linux-gnu --host=x86_64-pc-linux-gnu " exited with exit code 0 and output: | |
| configure: Configuring HMMER3 for your system. | |
| checking build system type... x86_64-pc-linux-gnu | |
| checking host system type... x86_64-pc-linux-gnu | |
| checking whether to compile using MPI... no | |
| checking for x86_64-pc-linux-gnu-gcc... gcc | |
| checking whether the C compiler works... yes | |
| checking for C compiler default output file name... a.out | |
| checking for suffix of executables... | |
| checking whether we are cross compiling... no | |
| checking for suffix of object files... o | |
| checking whether we are using the GNU C compiler... yes | |
| checking whether gcc accepts -g... yes | |
| checking for gcc option to accept ISO C89... none needed | |
| checking for gcc option to accept ISO C99... none needed | |
| checking for gcc option to accept ISO Standard C... (cached) none needed | |
| checking how to run the C preprocessor... gcc -E | |
| checking for a BSD-compatible install... /usr/bin/install -c | |
| checking for x86_64-pc-linux-gnu-ranlib... no | |
| checking for ranlib... ranlib | |
| checking for ar... /software/software/binutils/2.34-GCCcore-9.3.0/bin/ar | |
| checking whether ln -s works... yes | |
| checking for a sed that does not truncate output... /usr/bin/sed | |
| checking for grep that handles long lines and -e... /usr/bin/grep | |
| checking for egrep... /usr/bin/grep -E | |
| checking whether gcc is Clang... no | |
| checking whether pthreads work with -pthread... yes | |
| checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE | |
| checking whether more special flags are required for pthreads... no | |
| checking for PTHREAD_PRIO_INHERIT... yes | |
| checking whether gcc can compile our Altivec/VMX code... no | |
| checking whether gcc can compile our SSE code... yes | |
| configure: Activating Intel/AMD SSE vector DP implementation | |
| checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes | |
| checking compiler support --start-group... yes | |
| checking for gzip... /usr/bin/gzip | |
| checking for python3... no | |
| checking for library containing clock_gettime... none required | |
| checking for ANSI C header files... yes | |
| checking for sys/types.h... yes | |
| checking for sys/stat.h... yes | |
| checking for stdlib.h... yes | |
| checking for string.h... yes | |
| checking for memory.h... yes | |
| checking for strings.h... yes | |
| checking for inttypes.h... yes | |
| checking for stdint.h... yes | |
| checking for unistd.h... yes | |
| checking endian.h usability... yes | |
| checking endian.h presence... yes | |
| checking for endian.h... yes | |
| checking for inttypes.h... (cached) yes | |
| checking for stdint.h... (cached) yes | |
| checking for unistd.h... (cached) yes | |
| checking for sys/types.h... (cached) yes | |
| checking netinet/in.h usability... yes | |
| checking netinet/in.h presence... yes | |
| checking for netinet/in.h... yes | |
| checking sys/param.h usability... yes | |
| checking sys/param.h presence... yes | |
| checking for sys/param.h... yes | |
| checking for sys/sysctl.h... yes | |
| checking for uint8_t... yes | |
| checking for uint16_t... yes | |
| checking for uint32_t... yes | |
| checking for uint64_t... yes | |
| checking for off_t... yes | |
| checking whether byte ordering is bigendian... no | |
| checking for __attribute__((noreturn))... yes | |
| checking for __attribute__((format))... yes | |
| checking for mkstemp... yes | |
| checking for popen... yes | |
| checking for putenv... yes | |
| checking for strcasecmp... yes | |
| checking for strsep... yes | |
| checking for times... yes | |
| checking for getpid... yes | |
| checking for sysctl... yes | |
| checking for sysconf... yes | |
| checking for getcwd... yes | |
| checking for chmod... yes | |
| checking for stat... yes | |
| checking for fstat... yes | |
| checking for erfc... yes | |
| checking for library containing ntohs... none required | |
| checking for library containing ntohl... none required | |
| checking for library containing htons... none required | |
| checking for library containing htonl... none required | |
| checking for library containing socket... none required | |
| checking for library containing inet_pton... none required | |
| checking for _LARGEFILE_SOURCE value needed for large files... no | |
| checking for special C compiler options needed for large files... no | |
| checking for _FILE_OFFSET_BITS value needed for large files... no | |
| configure: creating ./config.status | |
| config.status: creating Makefile | |
| config.status: creating src/Makefile | |
| config.status: creating testsuite/Makefile | |
| config.status: creating profmark/Makefile | |
| config.status: creating src/impl_sse/Makefile | |
| config.status: creating documentation/Makefile | |
| config.status: creating documentation/man/Makefile | |
| config.status: creating documentation/userguide/Makefile | |
| config.status: creating documentation/userguide/inclusions/Makefile | |
| config.status: creating libdivsufsort/Makefile | |
| config.status: creating easel/Makefile | |
| config.status: creating easel/miniapps/Makefile | |
| config.status: creating easel/testsuite/Makefile | |
| config.status: creating easel/documentation/Makefile | |
| config.status: creating documentation/userguide/titlepage.tex | |
| config.status: creating documentation/userguide/titlepage_daemon.tex | |
| config.status: creating documentation/userguide/copyright.tex | |
| config.status: creating documentation/man/alimask.man | |
| config.status: creating documentation/man/hmmalign.man | |
| config.status: creating documentation/man/hmmbuild.man | |
| config.status: creating documentation/man/hmmc2.man | |
| config.status: creating documentation/man/hmmconvert.man | |
| config.status: creating documentation/man/hmmemit.man | |
| config.status: creating documentation/man/hmmer.man | |
| config.status: creating documentation/man/hmmfetch.man | |
| config.status: creating documentation/man/hmmlogo.man | |
| config.status: creating documentation/man/hmmpgmd.man | |
| config.status: creating documentation/man/hmmpgmd_shard.man | |
| config.status: creating documentation/man/hmmpress.man | |
| config.status: creating documentation/man/hmmscan.man | |
| config.status: creating documentation/man/hmmsearch.man | |
| config.status: creating documentation/man/hmmsim.man | |
| config.status: creating documentation/man/hmmstat.man | |
| config.status: creating documentation/man/jackhmmer.man | |
| config.status: creating documentation/man/makehmmerdb.man | |
| config.status: creating documentation/man/nhmmer.man | |
| config.status: creating documentation/man/nhmmscan.man | |
| config.status: creating documentation/man/phmmer.man | |
| config.status: creating easel/miniapps/esl-afetch.man | |
| config.status: creating easel/miniapps/esl-alimanip.man | |
| config.status: creating easel/miniapps/esl-alimap.man | |
| config.status: creating easel/miniapps/esl-alimask.man | |
| config.status: creating easel/miniapps/esl-alimerge.man | |
| config.status: creating easel/miniapps/esl-alipid.man | |
| config.status: creating easel/miniapps/esl-alirev.man | |
| config.status: creating easel/miniapps/esl-alistat.man | |
| config.status: creating easel/miniapps/esl-compalign.man | |
| config.status: creating easel/miniapps/esl-compstruct.man | |
| config.status: creating easel/miniapps/esl-construct.man | |
| config.status: creating easel/miniapps/esl-histplot.man | |
| config.status: creating easel/miniapps/esl-mask.man | |
| config.status: creating easel/miniapps/esl-mixdchlet.man | |
| config.status: creating easel/miniapps/esl-reformat.man | |
| config.status: creating easel/miniapps/esl-selectn.man | |
| config.status: creating easel/miniapps/esl-seqrange.man | |
| config.status: creating easel/miniapps/esl-seqstat.man | |
| config.status: creating easel/miniapps/esl-sfetch.man | |
| config.status: creating easel/miniapps/esl-shuffle.man | |
| config.status: creating easel/miniapps/esl-ssdraw.man | |
| config.status: creating easel/miniapps/esl-translate.man | |
| config.status: creating easel/miniapps/esl-weight.man | |
| config.status: creating easel/decoy_config.h | |
| config.status: creating src/p7_config.h | |
| config.status: creating easel/esl_config.h | |
| config.status: creating libdivsufsort/divsufsort.h | |
| config.status: linking src/impl_sse to src/impl | |
| HMMER configuration: | |
| compiler: gcc -O2 -ftree-vectorize -march=native -fno-math-errno -pthread | |
| host: x86_64-pc-linux-gnu | |
| linker: -L/software/software/binutils/2.34-GCCcore-9.3.0/lib -L/software/software/GCCcore/9.3.0/lib64 -L/software/software/GCCcore/9.3.0/lib | |
| libraries: -lm -lpthread | |
| DP implementation: sse | |
| (No python3 found, so 'make check' is disabled.) | |
| Now do 'make' to build HMMER, and optionally: | |
| 'make install' to install programs and man pages, | |
| '(cd easel; make install)' to install Easel tools. | |
| == 2020-10-20 10:52:19,484 build_log.py:265 INFO building... | |
| == 2020-10-20 10:52:19,484 easyblock.py:3033 INFO Starting build step | |
| == 2020-10-20 10:52:19,484 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-20 10:52:19,484 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='hmmer', builddir='/local/tmp/f115261/HMMER/3.3.1/GCCcore-9.3.0', github_account='hmmer', installdir='/home/f115261/easybuildinstall/software/HMMER/3.3.1-GCCcore-9.3.0', name='HMMER', nameletter='H', nameletterlower='h', namelower='hmmer', parallel='2', toolchain_name='GCCcore', toolchain_version='9.3.0', version='3.3.1', version_major='3', version_major_minor='3.3', version_minor='3', versionprefix='', versionsuffix='' | |
| == 2020-10-20 10:52:19,484 easyblock.py:3039 INFO Running method build_step part of step build | |
| == 2020-10-20 10:52:19,484 run.py:222 INFO running cmd: make -j 2 | |
| == 2020-10-20 10:52:53,259 run.py:538 INFO cmd " make -j 2 " exited with exit code 0 and output: | |
| SUBDIR easel | |
| CC easel.o | |
| CC esl_alloc.o | |
| CC esl_alphabet.o | |
| CC esl_arr2.o | |
| CC esl_arr3.o | |
| CC esl_bitfield.o | |
| CC esl_buffer.o | |
| CC esl_cluster.o | |
| CC esl_composition.o | |
| CC esl_cpu.o | |
| CC esl_dirichlet.o | |
| CC esl_distance.o | |
| CC esl_dmatrix.o | |
| CC esl_dsqdata.o | |
| CC esl_exponential.o | |
| CC esl_fileparser.o | |
| CC esl_gamma.o | |
| CC esl_gencode.o | |
| CC esl_getopts.o | |
| CC esl_gev.o | |
| CC esl_graph.o | |
| CC esl_gumbel.o | |
| CC esl_heap.o | |
| CC esl_histogram.o | |
| CC esl_hmm.o | |
| CC esl_huffman.o | |
| CC esl_hyperexp.o | |
| CC esl_json.o | |
| CC esl_keyhash.o | |
| CC esl_matrixops.o | |
| CC esl_mem.o | |
| CC esl_minimizer.o | |
| CC esl_mixdchlet.o | |
| CC esl_mixgev.o | |
| CC esl_mpi.o | |
| CC esl_msa.o | |
| CC esl_msacluster.o | |
| CC esl_msafile.o | |
| CC esl_msafile2.o | |
| CC esl_msafile_a2m.o | |
| CC esl_msafile_afa.o | |
| CC esl_msafile_clustal.o | |
| CC esl_msafile_phylip.o | |
| CC esl_msafile_psiblast.o | |
| CC esl_msafile_selex.o | |
| CC esl_msafile_stockholm.o | |
| CC esl_msashuffle.o | |
| CC esl_msaweight.o | |
| CC esl_normal.o | |
| CC esl_paml.o | |
| CC esl_quicksort.o | |
| CC esl_random.o | |
| CC esl_rand64.o | |
| CC esl_randomseq.o | |
| CC esl_ratematrix.o | |
| CC esl_recorder.o | |
| CC esl_red_black.o | |
| CC esl_regexp.o | |
| CC esl_rootfinder.o | |
| CC esl_scorematrix.o | |
| CC esl_sq.o | |
| CC esl_sqio.o | |
| CC esl_sqio_ascii.o | |
| CC esl_sqio_ncbi.o | |
| CC esl_ssi.o | |
| CC esl_stack.o | |
| CC esl_stats.o | |
| CC esl_stopwatch.o | |
| CC esl_stretchexp.o | |
| CC esl_subcmd.o | |
| CC esl_threads.o | |
| CC esl_tree.o | |
| CC esl_varint.o | |
| CC esl_vectorops.o | |
| CC esl_weibull.o | |
| CC esl_workqueue.o | |
| CC esl_wuss.o | |
| CC esl_sse.o | |
| CC esl_avx.o | |
| CC esl_avx512.o | |
| CC esl_neon.o | |
| CC esl_vmx.o | |
| AR libeasel.a | |
| SUBDIR miniapps | |
| GEN esl-afetch | |
| GEN esl-alimanip | |
| GEN esl-alimap | |
| GEN esl-alimask | |
| GEN esl-alimerge | |
| GEN esl-alipid | |
| GEN esl-alirev | |
| GEN esl-alistat | |
| GEN esl-compalign | |
| GEN esl-compstruct | |
| GEN esl-construct | |
| GEN esl-histplot | |
| GEN esl-mask | |
| GEN esl-mixdchlet | |
| GEN esl-reformat | |
| GEN esl-selectn | |
| GEN esl-seqrange | |
| GEN esl-seqstat | |
| GEN esl-sfetch | |
| GEN esl-shuffle | |
| GEN esl-ssdraw | |
| GEN esl-translate | |
| GEN esl-weight | |
| CC cmd_alistat.o | |
| CC cmd_downsample.o | |
| CC cmd_filter.o | |
| GEN easel | |
| SUBDIR libdivsufsort | |
| CC divsufsort.o | |
| AR libdivsufsort.a | |
| SUBDIR src | |
| CC alimask.o | |
| CC build.o | |
| CC cachedb.o | |
| CC cachedb_shard.o | |
| CC emit.o | |
| CC errors.o | |
| CC evalues.o | |
| CC eweight.o | |
| CC generic_decoding.o | |
| CC generic_fwdback.o | |
| CC generic_fwdback_chk.o | |
| CC generic_fwdback_banded.o | |
| CC generic_null2.o | |
| CC generic_msv.o | |
| CC generic_optacc.o | |
| CC generic_stotrace.o | |
| CC generic_viterbi.o | |
| CC generic_vtrace.o | |
| CC h2_io.o | |
| CC heatmap.o | |
| CC hmmlogo.o | |
| CC hmmdmstr.o | |
| CC hmmdmstr_shard.o | |
| CC hmmd_search_status.o | |
| CC hmmdwrkr.o | |
| CC hmmdwrkr_shard.o | |
| CC hmmdutils.o | |
| CC hmmer.o | |
| CC logsum.o | |
| CC modelconfig.o | |
| CC modelstats.o | |
| CC mpisupport.o | |
| CC seqmodel.o | |
| CC tracealign.o | |
| CC p7_alidisplay.o | |
| CC p7_bg.o | |
| CC p7_builder.o | |
| CC p7_domain.o | |
| CC p7_domaindef.o | |
| CC p7_gbands.o | |
| CC p7_gmx.o | |
| CC p7_gmxb.o | |
| CC p7_gmxchk.o | |
| CC p7_hit.o | |
| CC p7_hmm.o | |
| CC p7_hmmcache.o | |
| CC p7_hmmd_search_stats.o | |
| CC p7_hmmfile.o | |
| CC p7_hmmwindow.o | |
| CC p7_pipeline.o | |
| CC p7_prior.o | |
| CC p7_profile.o | |
| CC p7_spensemble.o | |
| CC p7_tophits.o | |
| CC p7_trace.o | |
| CC p7_scoredata.o | |
| CC hmmpgmd2msa.o | |
| CC fm_alphabet.o | |
| CC fm_general.o | |
| CC fm_sse.o | |
| CC fm_ssv.o | |
| CC hmmalign.o | |
| CC hmmbuild.o | |
| CC hmmconvert.o | |
| CC hmmemit.o | |
| CC hmmfetch.o | |
| CC hmmpgmd.o | |
| CC hmmpgmd_shard.o | |
| CC hmmpress.o | |
| CC hmmscan.o | |
| CC hmmsearch.o | |
| CC hmmsim.o | |
| CC hmmstat.o | |
| CC jackhmmer.o | |
| CC phmmer.o | |
| CC nhmmer.o | |
| CC nhmmscan.o | |
| CC makehmmerdb.o | |
| CC hmmc2.o | |
| CC hmmerfm-exactmatch.o | |
| AR libhmmer-src.stamp | |
| SUBDIR impl_sse | |
| CC decoding.o | |
| CC fwdback.o | |
| CC io.o | |
| CC ssvfilter.o | |
| CC msvfilter.o | |
| CC null2.o | |
| CC optacc.o | |
| CC stotrace.o | |
| CC vitfilter.o | |
| CC p7_omx.o | |
| CC p7_oprofile.o | |
| CC mpi.o | |
| AR libhmmer-impl.stamp | |
| GEN alimask | |
| GEN hmmalign | |
| GEN hmmbuild | |
| GEN hmmconvert | |
| GEN hmmemit | |
| GEN hmmfetch | |
| GEN hmmlogo | |
| GEN hmmpgmd | |
| GEN hmmpgmd_shard | |
| GEN hmmpress | |
| GEN hmmscan | |
| GEN hmmsearch | |
| GEN hmmsim | |
| GEN hmmstat | |
| GEN jackhmmer | |
| GEN phmmer | |
| GEN nhmmer | |
| GEN nhmmscan | |
| GEN makehmmerdb | |
| GEN hmmc2 | |
| GEN hmmerfm-exactmatch | |
| SUBDIR profmark | |
| CC create-profmark.o | |
| CC rocplot.o | |
| GEN rocplot | |
| GEN create-profmark | |
| == 2020-10-20 10:52:53,259 build_log.py:265 INFO testing... | |
| == 2020-10-20 10:52:53,259 easyblock.py:3033 INFO Starting test step | |
| == 2020-10-20 10:52:53,259 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-20 10:52:53,260 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='hmmer', builddir='/local/tmp/f115261/HMMER/3.3.1/GCCcore-9.3.0', github_account='hmmer', installdir='/home/f115261/easybuildinstall/software/HMMER/3.3.1-GCCcore-9.3.0', name='HMMER', nameletter='H', nameletterlower='h', namelower='hmmer', parallel='2', toolchain_name='GCCcore', toolchain_version='9.3.0', version='3.3.1', version_major='3', version_major_minor='3.3', version_minor='3', versionprefix='', versionsuffix='' | |
| == 2020-10-20 10:52:53,260 easyblock.py:3039 INFO Running method test_step part of step test | |
| == 2020-10-20 10:52:53,260 run.py:222 INFO running cmd: make check | |
| == 2020-10-20 10:52:53,454 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): cmd " make check " exited with exit code 2 and output: | |
| python3 is required for 'make check', but is not in your PATH. Aborting. | |
| make: *** [check] Error 1 | |
| (at easybuild/tools/run.py:533 in parse_cmd_output) | |
| == 2020-10-20 10:52:53,454 filetools.py:1610 INFO Removing lock /home/f115261/easybuildinstall/software/.locks/_home_f115261_easybuildinstall_software_HMMER_3.3.1-GCCcore-9.3.0.lock... | |
| == 2020-10-20 10:52:53,454 filetools.py:330 INFO Path /home/f115261/easybuildinstall/software/.locks/_home_f115261_easybuildinstall_software_HMMER_3.3.1-GCCcore-9.3.0.lock successfully removed. | |
| == 2020-10-20 10:52:53,454 filetools.py:1614 INFO Lock removed: /home/f115261/easybuildinstall/software/.locks/_home_f115261_easybuildinstall_software_HMMER_3.3.1-GCCcore-9.3.0.lock | |
| == 2020-10-20 10:52:53,454 easyblock.py:3311 WARNING build failed (first 300 chars): cmd " make check " exited with exit code 2 and output: | |
| python3 is required for 'make check', but is not in your PATH. Aborting. | |
| make: *** [check] Error 1 | |
| == 2020-10-20 10:52:53,455 easyblock.py:295 INFO Closing log for application name HMMER version 3.3.1 |
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