Created
October 20, 2020 08:56
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(partial) EasyBuild log for failed build of /local/tmp/f115261/eb-UAGL56/files_pr10558/p/PIPITS/PIPITS-2.7-foss-2020a.eb (PR #10558)
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| == 2020-10-20 10:56:02,598 easyblock.py:280 INFO This is EasyBuild 4.3.0 (framework: 4.3.0, easyblocks: 4.3.0) on host build.hpc.rug.nl. | |
| == 2020-10-20 10:56:02,598 easyblock.py:286 INFO This is easyblock PythonBundle from module easybuild.easyblocks.generic.pythonbundle (/software/software/EasyBuild/4.3.0/lib/python2.7/site-packages/easybuild/easyblocks/generic/pythonbundle.pyo) | |
| == 2020-10-20 10:56:02,598 easyblock.py:894 INFO Build dir set to /local/tmp/f115261/PIPITS/2.7/foss-2020a | |
| == 2020-10-20 10:56:02,598 easyblock.py:954 INFO Software install dir set to /home/f115261/easybuildinstall/software/PIPITS/2.7-foss-2020a | |
| == 2020-10-20 10:56:02,598 easyblock.py:959 INFO Module install dir set to /home/f115261/easybuildinstall/modules/all | |
| == 2020-10-20 10:56:02,598 easyblock.py:265 INFO Init completed for application name PIPITS version 2.7 | |
| == 2020-10-20 10:56:02,599 pythonbundle.py:73 INFO Detection of downloaded extension dependencies is enabled | |
| == 2020-10-20 10:56:02,599 pythonbundle.py:77 INFO exts_default_options: {'use_pip_requirement': False, 'use_pip_extras': None, 'unpack_sources': True, 'install_target': 'install', 'use_pip_for_deps': False, 'sanity_pip_check': False, 'use_pip_editable': False, 'pip_ignore_installed': True, 'req_py_minver': None, 'buildcmd': 'build', 'use_easy_install': False, 'download_dep_fail': True, 'use_setup_py_develop': False, 'source_urls': ['https://pypi.python.org/packages/source/P/PIPITS'], 'use_pip': True, 'runtest': True, 'req_py_majver': None, 'zipped_egg': False, 'options': {}, 'check_ldshared': None} | |
| == 2020-10-20 10:56:02,599 easyblock.py:3273 INFO Obtained application instance of for PIPITS (easyblock: PythonBundle) | |
| == 2020-10-20 10:56:02,599 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-20 10:56:02,600 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-20 10:56:02,600 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-20 10:56:02,600 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='pipits', github_account='pipits', mpi_cmd_prefix='mpirun -n 1', name='PIPITS', nameletter='P', nameletterlower='p', namelower='pipits', pymajver='3', pyminver='8', pyshortver='3.8', pyver='3.8.2', toolchain_name='foss', toolchain_version='2020a', version='2.7', version_major='2', version_major_minor='2.7', version_minor='7', versionprefix='', versionsuffix='' | |
| == 2020-10-20 10:56:02,600 one.py:159 INFO Skipping reformatting value for parameter 'toolchain' | |
| == 2020-10-20 10:56:02,601 filetools.py:1500 INFO Creating directory /local/tmp/f115261/reprod_20201020105602_6393 (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-20 10:56:02,601 easyblock.py:3476 INFO Dumped easyconfig instance to /local/tmp/f115261/reprod_20201020105602_6393/PIPITS-2.7-foss-2020a.eb | |
| == 2020-10-20 10:56:02,605 filetools.py:1500 INFO Creating directory /local/tmp/f115261/reprod_20201020105602_6393/easyblocks (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-20 10:56:02,612 filetools.py:2019 INFO /software/software/EasyBuild/4.3.0/lib/python2.7/site-packages/easybuild/easyblocks/generic/pythonbundle.py copied to /local/tmp/f115261/reprod_20201020105602_6393/easyblocks/pythonbundle.py | |
| == 2020-10-20 10:56:02,612 easyblock.py:3456 INFO Dumped easyblock pythonbundle.py required for reproduction to /local/tmp/f115261/reprod_20201020105602_6393/easyblocks | |
| == 2020-10-20 10:56:02,616 filetools.py:2019 INFO /software/software/EasyBuild/4.3.0/lib/python2.7/site-packages/easybuild/easyblocks/generic/bundle.py copied to /local/tmp/f115261/reprod_20201020105602_6393/easyblocks/bundle.py | |
| == 2020-10-20 10:56:02,616 easyblock.py:3456 INFO Dumped easyblock bundle.py required for reproduction to /local/tmp/f115261/reprod_20201020105602_6393/easyblocks | |
| == 2020-10-20 10:56:02,616 filetools.py:1500 INFO Creating directory /local/tmp/f115261/reprod_20201020105602_6393/hooks (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-20 10:56:02,616 filetools.py:2019 INFO /home/f115261/easybuild/cit-hpc-easybuild/hooks/hooks.py copied to /local/tmp/f115261/reprod_20201020105602_6393/hooks/hooks.py | |
| == 2020-10-20 10:56:02,617 easyblock.py:3488 INFO Dumped hooks file /home/f115261/easybuild/cit-hpc-easybuild/hooks/hooks.py which is (potentially) required for reproduction to /local/tmp/f115261/reprod_20201020105602_6393/hooks/hooks.py | |
| == 2020-10-20 10:56:02,617 easyblock.py:1691 INFO Number of iterations to perform for central part of installation procedure: 1 | |
| == 2020-10-20 10:56:02,617 build_log.py:265 INFO building and installing PIPITS/2.7-foss-2020a... | |
| == 2020-10-20 10:56:02,617 filetools.py:1602 INFO Lock /home/f115261/easybuildinstall/software/.locks/_home_f115261_easybuildinstall_software_PIPITS_2.7-foss-2020a.lock does not exist | |
| == 2020-10-20 10:56:02,617 filetools.py:1543 INFO Creating lock at /home/f115261/easybuildinstall/software/.locks/_home_f115261_easybuildinstall_software_PIPITS_2.7-foss-2020a.lock... | |
| == 2020-10-20 10:56:02,617 filetools.py:1500 INFO Creating directory /home/f115261/easybuildinstall/software/.locks/_home_f115261_easybuildinstall_software_PIPITS_2.7-foss-2020a.lock (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-20 10:56:02,617 filetools.py:1552 INFO Lock created: /home/f115261/easybuildinstall/software/.locks/_home_f115261_easybuildinstall_software_PIPITS_2.7-foss-2020a.lock | |
| == 2020-10-20 10:56:02,617 build_log.py:265 INFO fetching files... | |
| == 2020-10-20 10:56:02,618 easyblock.py:3033 INFO Starting fetch step | |
| == 2020-10-20 10:56:02,618 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-20 10:56:02,618 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-20 10:56:02,618 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-20 10:56:02,618 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='pipits', builddir='/local/tmp/f115261/PIPITS/2.7/foss-2020a', github_account='pipits', installdir='/home/f115261/easybuildinstall/software/PIPITS/2.7-foss-2020a', mpi_cmd_prefix='mpirun -n 1', name='PIPITS', nameletter='P', nameletterlower='p', namelower='pipits', pymajver='3', pyminver='8', pyshortver='3.8', pyver='3.8.2', toolchain_name='foss', toolchain_version='2020a', version='2.7', version_major='2', version_major_minor='2.7', version_minor='7', versionprefix='', versionsuffix='' | |
| == 2020-10-20 10:56:02,618 easyblock.py:3039 INFO Running method fetch_step part of step fetch | |
| == 2020-10-20 10:56:02,618 easyblock.py:1800 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
| == 2020-10-20 10:56:02,618 easyblock.py:1826 INFO no sources provided | |
| == 2020-10-20 10:56:02,618 easyblock.py:1841 INFO no patches provided | |
| == 2020-10-20 10:56:02,619 tools.py:266 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.3.0/bin/eb | |
| == 2020-10-20 10:56:02,619 tools.py:280 INFO Also considering installation prefix /software/software/EasyBuild/4.3.0 (determined via path to 'eb' script)... | |
| == 2020-10-20 10:56:02,663 easyblock.py:722 INFO Found file biom-format-2.1.8-1.tar.gz at /apps/.local/sources/p/PIPITS/extensions/biom-format-2.1.8-1.tar.gz | |
| == 2020-10-20 10:56:03,167 easyblock.py:580 INFO md5 checksum for /apps/.local/sources/p/PIPITS/extensions/biom-format-2.1.8-1.tar.gz: f5f3d45470dca6c3c6d2428758cee7c2 | |
| == 2020-10-20 10:56:03,202 easyblock.py:580 INFO sha256 checksum for /apps/.local/sources/p/PIPITS/extensions/biom-format-2.1.8-1.tar.gz: 3711de5807e5b29d944cd2713a16f26b6148eefd5b831ccad6a10c06cbd42649 | |
| == 2020-10-20 10:56:03,235 easyblock.py:586 INFO Checksum for extension source biom-format-2.1.8-1.tar.gz verified | |
| == 2020-10-20 10:56:03,236 easyblock.py:490 INFO Fetched extension patches: [] | |
| == 2020-10-20 10:56:03,236 tools.py:266 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.3.0/bin/eb | |
| == 2020-10-20 10:56:03,236 tools.py:280 INFO Also considering installation prefix /software/software/EasyBuild/4.3.0 (determined via path to 'eb' script)... | |
| == 2020-10-20 10:56:03,238 easyblock.py:722 INFO Found file python-utils-2.4.0.tar.gz at /apps/.local/sources/p/PIPITS/extensions/python-utils-2.4.0.tar.gz | |
| == 2020-10-20 10:56:03,242 easyblock.py:580 INFO md5 checksum for /apps/.local/sources/p/PIPITS/extensions/python-utils-2.4.0.tar.gz: 14acf88f57a4f4346e99a01844fe06a6 | |
| == 2020-10-20 10:56:03,243 easyblock.py:580 INFO sha256 checksum for /apps/.local/sources/p/PIPITS/extensions/python-utils-2.4.0.tar.gz: f21fc09ff58ea5ebd1fd2e8ef7f63e39d456336900f26bdc9334a03a3f7d8089 | |
| == 2020-10-20 10:56:03,244 easyblock.py:586 INFO Checksum for extension source python-utils-2.4.0.tar.gz verified | |
| == 2020-10-20 10:56:03,244 easyblock.py:490 INFO Fetched extension patches: [] | |
| == 2020-10-20 10:56:03,245 tools.py:266 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.3.0/bin/eb | |
| == 2020-10-20 10:56:03,245 tools.py:280 INFO Also considering installation prefix /software/software/EasyBuild/4.3.0 (determined via path to 'eb' script)... | |
| == 2020-10-20 10:56:03,247 easyblock.py:722 INFO Found file progressbar2-3.53.1.tar.gz at /apps/.local/sources/p/PIPITS/extensions/progressbar2-3.53.1.tar.gz | |
| == 2020-10-20 10:56:03,252 easyblock.py:580 INFO md5 checksum for /apps/.local/sources/p/PIPITS/extensions/progressbar2-3.53.1.tar.gz: d2a9835daafe8587d0c61fde9da80b78 | |
| == 2020-10-20 10:56:03,253 easyblock.py:580 INFO sha256 checksum for /apps/.local/sources/p/PIPITS/extensions/progressbar2-3.53.1.tar.gz: ef72be284e7f2b61ac0894b44165926f13f5d995b2bf3cd8a8dedc6224b255a7 | |
| == 2020-10-20 10:56:03,254 easyblock.py:586 INFO Checksum for extension source progressbar2-3.53.1.tar.gz verified | |
| == 2020-10-20 10:56:03,254 easyblock.py:490 INFO Fetched extension patches: [] | |
| == 2020-10-20 10:56:03,254 tools.py:266 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.3.0/bin/eb | |
| == 2020-10-20 10:56:03,254 tools.py:280 INFO Also considering installation prefix /software/software/EasyBuild/4.3.0 (determined via path to 'eb' script)... | |
| == 2020-10-20 10:56:03,257 easyblock.py:722 INFO Found file 1.1.tar.gz at /apps/.local/sources/p/PIPITS/extensions/1.1.tar.gz | |
| == 2020-10-20 10:56:03,260 easyblock.py:580 INFO md5 checksum for /apps/.local/sources/p/PIPITS/extensions/1.1.tar.gz: 0d757d28f5f25c942f09a59b0718f20b | |
| == 2020-10-20 10:56:03,261 easyblock.py:580 INFO sha256 checksum for /apps/.local/sources/p/PIPITS/extensions/1.1.tar.gz: 8fb2e1c0ae38ecca7c637de9c0b655eb18fc67d7838ceb5a6902555ea12416c0 | |
| == 2020-10-20 10:56:03,262 easyblock.py:586 INFO Checksum for extension source 1.1.tar.gz verified | |
| == 2020-10-20 10:56:03,262 easyblock.py:490 INFO Fetched extension patches: [] | |
| == 2020-10-20 10:56:03,262 tools.py:266 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /software/software/EasyBuild/4.3.0/bin/eb | |
| == 2020-10-20 10:56:03,263 tools.py:280 INFO Also considering installation prefix /software/software/EasyBuild/4.3.0 (determined via path to 'eb' script)... | |
| == 2020-10-20 10:56:03,265 easyblock.py:722 INFO Found file 2.7.tar.gz at /apps/.local/sources/p/PIPITS/extensions/2.7.tar.gz | |
| == 2020-10-20 10:56:03,270 easyblock.py:580 INFO md5 checksum for /apps/.local/sources/p/PIPITS/extensions/2.7.tar.gz: 4be78c7a8a699b6c05c634f2031f3ad2 | |
| == 2020-10-20 10:56:03,272 easyblock.py:580 INFO sha256 checksum for /apps/.local/sources/p/PIPITS/extensions/2.7.tar.gz: ae2b3eca133a44c072bc0f0817af2affbcc1b2a64cc8904c326e4604cda3ecff | |
| == 2020-10-20 10:56:03,273 easyblock.py:586 INFO Checksum for extension source 2.7.tar.gz verified | |
| == 2020-10-20 10:56:03,273 easyblock.py:490 INFO Fetched extension patches: [] | |
| == 2020-10-20 10:56:03,273 easyblock.py:1886 INFO Checking dirs that need to be created: ['/home/f115261/easybuildinstall/software/PIPITS/2.7-foss-2020a', '/home/f115261/easybuildinstall/modules/all/PIPITS', '/home/f115261/easybuildinstall/modules/bio/PIPITS'] | |
| == 2020-10-20 10:56:03,273 filetools.py:1500 INFO Creating directory /home/f115261/easybuildinstall/software/PIPITS/2.7-foss-2020a (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-20 10:56:03,274 filetools.py:1500 INFO Creating directory /home/f115261/easybuildinstall/modules/all/PIPITS (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-20 10:56:03,274 filetools.py:1500 INFO Creating directory /home/f115261/easybuildinstall/modules/bio/PIPITS (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-20 10:56:03,274 build_log.py:265 INFO creating build dir, resetting environment... | |
| == 2020-10-20 10:56:03,274 easyblock.py:3033 INFO Starting ready step | |
| == 2020-10-20 10:56:03,274 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-20 10:56:03,274 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-20 10:56:03,274 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-20 10:56:03,275 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='pipits', builddir='/local/tmp/f115261/PIPITS/2.7/foss-2020a', github_account='pipits', installdir='/home/f115261/easybuildinstall/software/PIPITS/2.7-foss-2020a', mpi_cmd_prefix='mpirun -n 1', name='PIPITS', nameletter='P', nameletterlower='p', namelower='pipits', pymajver='3', pyminver='8', pyshortver='3.8', pyver='3.8.2', toolchain_name='foss', toolchain_version='2020a', version='2.7', version_major='2', version_major_minor='2.7', version_minor='7', versionprefix='', versionsuffix='' | |
| == 2020-10-20 10:56:03,275 easyblock.py:3039 INFO Running method check_readiness_step part of step ready | |
| == 2020-10-20 10:56:03,282 easyblock.py:1710 INFO Setting parallelism: 2 | |
| == 2020-10-20 10:56:03,322 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2020-10-20 10:56:03,322 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-20 10:56:03,322 easyblock.py:1749 WARNING Loaded modules detected: ['EasyBuild/4.3.0'] | |
| == 2020-10-20 10:56:03,323 easyblock.py:3039 INFO Running method make_builddir part of step ready | |
| == 2020-10-20 10:56:03,323 filetools.py:1500 INFO Creating directory /local/tmp/f115261/PIPITS/2.7/foss-2020a (parents: True, set_gid: False, sticky: False) | |
| == 2020-10-20 10:56:03,323 easyblock.py:3039 INFO Running method reset_env part of step ready | |
| == 2020-10-20 10:56:03,323 easyblock.py:3039 INFO Running method handle_iterate_opts part of step ready | |
| == 2020-10-20 10:56:03,323 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-20 10:56:03,324 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-20 10:56:03,324 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-20 10:56:03,324 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='pipits', builddir='/local/tmp/f115261/PIPITS/2.7/foss-2020a', github_account='pipits', installdir='/home/f115261/easybuildinstall/software/PIPITS/2.7-foss-2020a', mpi_cmd_prefix='mpirun -n 1', name='PIPITS', nameletter='P', nameletterlower='p', namelower='pipits', parallel='2', pymajver='3', pyminver='8', pyshortver='3.8', pyver='3.8.2', toolchain_name='foss', toolchain_version='2020a', version='2.7', version_major='2', version_major_minor='2.7', version_minor='7', versionprefix='', versionsuffix='' | |
| == 2020-10-20 10:56:03,324 build_log.py:265 INFO unpacking... | |
| == 2020-10-20 10:56:03,324 easyblock.py:3033 INFO Starting source step | |
| == 2020-10-20 10:56:03,324 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-20 10:56:03,325 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-20 10:56:03,325 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-20 10:56:03,325 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='pipits', builddir='/local/tmp/f115261/PIPITS/2.7/foss-2020a', github_account='pipits', installdir='/home/f115261/easybuildinstall/software/PIPITS/2.7-foss-2020a', mpi_cmd_prefix='mpirun -n 1', name='PIPITS', nameletter='P', nameletterlower='p', namelower='pipits', parallel='2', pymajver='3', pyminver='8', pyshortver='3.8', pyver='3.8.2', toolchain_name='foss', toolchain_version='2020a', version='2.7', version_major='2', version_major_minor='2.7', version_minor='7', versionprefix='', versionsuffix='' | |
| == 2020-10-20 10:56:03,325 easyblock.py:3039 INFO Running method checksum_step part of step source | |
| == 2020-10-20 10:56:03,325 easyblock.py:3039 INFO Running method extract_step part of step source | |
| == 2020-10-20 10:56:03,325 build_log.py:265 INFO patching... | |
| == 2020-10-20 10:56:03,325 easyblock.py:3033 INFO Starting patch step | |
| == 2020-10-20 10:56:03,325 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-20 10:56:03,326 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-20 10:56:03,326 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-20 10:56:03,326 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='pipits', builddir='/local/tmp/f115261/PIPITS/2.7/foss-2020a', github_account='pipits', installdir='/home/f115261/easybuildinstall/software/PIPITS/2.7-foss-2020a', mpi_cmd_prefix='mpirun -n 1', name='PIPITS', nameletter='P', nameletterlower='p', namelower='pipits', parallel='2', pymajver='3', pyminver='8', pyshortver='3.8', pyver='3.8.2', toolchain_name='foss', toolchain_version='2020a', version='2.7', version_major='2', version_major_minor='2.7', version_minor='7', versionprefix='', versionsuffix='' | |
| == 2020-10-20 10:56:03,326 easyblock.py:3039 INFO Running method patch_step part of step patch | |
| == 2020-10-20 10:56:03,326 build_log.py:265 INFO preparing... | |
| == 2020-10-20 10:56:03,326 easyblock.py:3033 INFO Starting prepare step | |
| == 2020-10-20 10:56:03,326 easyconfig.py:1600 INFO Generating template values... | |
| == 2020-10-20 10:56:03,326 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2020-10-20 10:56:03,326 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'cmd': 'xxx_command_xxx', 'nr_ranks': 1}) | |
| == 2020-10-20 10:56:03,327 easyconfig.py:1619 INFO Template values: arch='x86_64', bitbucket_account='pipits', builddir='/local/tmp/f115261/PIPITS/2.7/foss-2020a', github_account='pipits', installdir='/home/f115261/easybuildinstall/software/PIPITS/2.7-foss-2020a', mpi_cmd_prefix='mpirun -n 1', name='PIPITS', nameletter='P', nameletterlower='p', namelower='pipits', parallel='2', pymajver='3', pyminver='8', pyshortver='3.8', pyver='3.8.2', toolchain_name='foss', toolchain_version='2020a', version='2.7', version_major='2', version_major_minor='2.7', version_minor='7', versionprefix='', versionsuffix='' | |
| == 2020-10-20 10:56:03,327 easyblock.py:3039 INFO Running method prepare_step part of step prepare | |
| == 2020-10-20 10:56:04,507 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to (previous value: '') | |
| == 2020-10-20 10:56:04,507 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-10-20 10:56:04,512 modules.py:606 INFO Checking whether Python/3.8.2-GCCcore-9.3.0 exists... | |
| == 2020-10-20 10:56:04,512 modules.py:611 INFO Module Python/3.8.2-GCCcore-9.3.0 exists (found in list of available modules) | |
| == 2020-10-20 10:56:04,512 modules.py:634 INFO Result for existence check of Python/3.8.2-GCCcore-9.3.0 module: True | |
| == 2020-10-20 10:56:04,512 modules.py:606 INFO Checking whether SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 exists... | |
| == 2020-10-20 10:56:04,513 modules.py:611 INFO Module SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 exists (found in list of available modules) | |
| == 2020-10-20 10:56:04,513 modules.py:634 INFO Result for existence check of SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 module: True | |
| == 2020-10-20 10:56:04,513 modules.py:606 INFO Checking whether h5py/2.10.0-foss-2020a-Python-3.8.2 exists... | |
| == 2020-10-20 10:56:04,513 modules.py:611 INFO Module h5py/2.10.0-foss-2020a-Python-3.8.2 exists (found in list of available modules) | |
| == 2020-10-20 10:56:04,513 modules.py:634 INFO Result for existence check of h5py/2.10.0-foss-2020a-Python-3.8.2 module: True | |
| == 2020-10-20 10:56:04,513 modules.py:606 INFO Checking whether VSEARCH/2.15.0-GCCcore-9.3.0 exists... | |
| == 2020-10-20 10:56:04,513 modules.py:611 INFO Module VSEARCH/2.15.0-GCCcore-9.3.0 exists (found in list of available modules) | |
| == 2020-10-20 10:56:04,513 modules.py:634 INFO Result for existence check of VSEARCH/2.15.0-GCCcore-9.3.0 module: True | |
| == 2020-10-20 10:56:04,513 modules.py:606 INFO Checking whether FASTX-Toolkit/0.0.14-GCC-9.3.0 exists... | |
| == 2020-10-20 10:56:04,513 modules.py:611 INFO Module FASTX-Toolkit/0.0.14-GCC-9.3.0 exists (found in list of available modules) | |
| == 2020-10-20 10:56:04,513 modules.py:634 INFO Result for existence check of FASTX-Toolkit/0.0.14-GCC-9.3.0 module: True | |
| == 2020-10-20 10:56:04,513 modules.py:606 INFO Checking whether ITSx/1.1.2-GCCcore-9.3.0 exists... | |
| == 2020-10-20 10:56:04,514 modules.py:611 INFO Module ITSx/1.1.2-GCCcore-9.3.0 exists (found in list of available modules) | |
| == 2020-10-20 10:56:04,514 modules.py:634 INFO Result for existence check of ITSx/1.1.2-GCCcore-9.3.0 module: True | |
| == 2020-10-20 10:56:04,514 modules.py:606 INFO Checking whether HMMER/3.3.1-GCCcore-9.3.0 exists... | |
| == 2020-10-20 10:56:04,514 modules.py:614 INFO Module HMMER/3.3.1-GCCcore-9.3.0 not found in list of available modules, checking via 'module show'... | |
| == 2020-10-20 10:56:06,635 modules.py:627 INFO Module HMMER/3.3.1-GCCcore-9.3.0 not found via module avail/show, checking whether it is a wrapper | |
| == 2020-10-20 10:56:06,636 modules.py:634 INFO Result for existence check of HMMER/3.3.1-GCCcore-9.3.0 module: False | |
| == 2020-10-20 10:56:06,636 modules.py:606 INFO Checking whether RDP-Classifier/2.12-Java-1.8 exists... | |
| == 2020-10-20 10:56:06,636 modules.py:611 INFO Module RDP-Classifier/2.12-Java-1.8 exists (found in list of available modules) | |
| == 2020-10-20 10:56:06,637 modules.py:634 INFO Result for existence check of RDP-Classifier/2.12-Java-1.8 module: True | |
| == 2020-10-20 10:56:06,637 modules.py:606 INFO Checking whether SeqKit/0.13.2 exists... | |
| == 2020-10-20 10:56:06,637 modules.py:611 INFO Module SeqKit/0.13.2 exists (found in list of available modules) | |
| == 2020-10-20 10:56:06,637 modules.py:634 INFO Result for existence check of SeqKit/0.13.2 module: True | |
| == 2020-10-20 10:56:06,653 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): Missing modules for dependencies (use --robot?): HMMER/3.3.1-GCCcore-9.3.0 (at easybuild/tools/toolchain/toolchain.py:555 in _check_dependencies) | |
| == 2020-10-20 10:56:06,653 filetools.py:1610 INFO Removing lock /home/f115261/easybuildinstall/software/.locks/_home_f115261_easybuildinstall_software_PIPITS_2.7-foss-2020a.lock... | |
| == 2020-10-20 10:56:06,654 filetools.py:330 INFO Path /home/f115261/easybuildinstall/software/.locks/_home_f115261_easybuildinstall_software_PIPITS_2.7-foss-2020a.lock successfully removed. | |
| == 2020-10-20 10:56:06,654 filetools.py:1614 INFO Lock removed: /home/f115261/easybuildinstall/software/.locks/_home_f115261_easybuildinstall_software_PIPITS_2.7-foss-2020a.lock | |
| == 2020-10-20 10:56:06,654 easyblock.py:3311 WARNING build failed (first 300 chars): Missing modules for dependencies (use --robot?): HMMER/3.3.1-GCCcore-9.3.0 | |
| == 2020-10-20 10:56:06,654 easyblock.py:295 INFO Closing log for application name PIPITS version 2.7 |
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