Ben Fulton benfulton

## fitch.ipynb

      
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                benfulton
                / fitch.ipynb
            
            
              Created
              January 10, 2025 20:15
            
          
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## Mastodon2HTML.py
from bs4 import BeautifulSoup
from link_preview import link_preview
import pickle
import requests
import socket
from html import escape
from datetime import datetime
import os
from collections import defaultdict

## read_tree.cpp
/* tree_build.c    2020-02-12 */

/* Copyright 2008-2020 Emmanuel Paradis, 2017 Klaus Schliep */

/* This file is part of the R-package `ape'. */
/* See the file ../COPYING for licensing issues. */

//#include <R.h>
//#include <Rinternals.h>
#include <cmath>

## newick_stretch.py
from Bio import Phylo
from io import StringIO
import sys

treedata = sys.argv[1]
handle = StringIO(treedata)
tree = Phylo.read(handle, "newick")

out = StringIO()

## msp.py
import requests
from lxml import html

courseids=[62454,62508,62446,62557,62448,62513,62549,62511,62451,62558,62477]
# music 62531,

def grade(r):
	try:
	  return float(r[2][0])/float(r[2][1])
	except ValueError:

## slim-init.py
import sys

sys.path.append("/path/to/GIT/waferslim/src")

import waferslim.server
import logging

#sys.argv = ['programname', '-iq', '-q', directory]

def start_server():

## directory_treemap.py
# This script reads a GIT directory and prints out the contents
# appropriately to be incorporated into a Google Visualization Treemap
# https://code.google.com/apis/ajax/playground/?type=visualization#tree_map
import os

rootdir = "E:\\Git"

result = {}
for path, dirs, files in os.walk(rootdir):
    key = os.path.basename(path)

## host_updater.py
import urllib2
import base64
import re

request = urllib2.Request("http://192.168.1.1/DHCPTable.asp")
base64string = base64.encodestring('%s:%s' % (USER, PASSWORD)).replace('\n', '')
request.add_header("Authorization", "Basic %s" % base64string)

lines = (re.findall(r"'(.*?)'", x, re.DOTALL) for x in urllib2.urlopen(request) if 'new AAA' in x)
q = dict((vv[0], vv[1]) for vv in lines if vv)

## WMPSongs.rb
require 'win32ole'

class MediaPlayer

  def initialize
    @player = WIN32OLE.new('WMPlayer.OCX')
  end

  def songs
    s = @player.mediacollection.getByAttribute("MediaType","Audio")

## RavenHQ.rb
require 'httparty'

response = HTTParty.get('https://1.ravenhq.com/docs')
response = HTTParty.get(response.headers['oauth-source'], :headers => { "Api-Key" => ApiKey })
auth = "Bearer " + response.body
response = HTTParty.get('https://1.ravenhq.com/databases/benfulton-SourcedTriples/docs/?start=0&pageSize=10', :headers => { "Authorization" => auth })
puts response.body, response.code, response.message, response.headers.inspect
	from bs4 import BeautifulSoup
	from link_preview import link_preview
	import pickle
	import requests
	import socket
	from html import escape
	from datetime import datetime
	import os
	from collections import defaultdict
	/* tree_build.c 2020-02-12 */

	/* Copyright 2008-2020 Emmanuel Paradis, 2017 Klaus Schliep */

	/* This file is part of the R-package `ape'. */
	/* See the file ../COPYING for licensing issues. */

	//#include <R.h>
	//#include <Rinternals.h>
	#include <cmath>
	from Bio import Phylo
	from io import StringIO
	import sys

	treedata = sys.argv[1]
	handle = StringIO(treedata)
	tree = Phylo.read(handle, "newick")

	out = StringIO()
	import requests
	from lxml import html

	courseids=[62454,62508,62446,62557,62448,62513,62549,62511,62451,62558,62477]
	# music 62531,

	def grade(r):
	try:
	return float(r[2][0])/float(r[2][1])
	except ValueError:
	import sys

	sys.path.append("/path/to/GIT/waferslim/src")

	import waferslim.server
	import logging

	#sys.argv = ['programname', '-iq', '-q', directory]

	def start_server():
	# This script reads a GIT directory and prints out the contents
	# appropriately to be incorporated into a Google Visualization Treemap
	# https://code.google.com/apis/ajax/playground/?type=visualization#tree_map
	import os

	rootdir = "E:\\Git"

	result = {}
	for path, dirs, files in os.walk(rootdir):
	key = os.path.basename(path)
	import urllib2
	import base64
	import re

	request = urllib2.Request("http://192.168.1.1/DHCPTable.asp")
	base64string = base64.encodestring('%s:%s' % (USER, PASSWORD)).replace('\n', '')
	request.add_header("Authorization", "Basic %s" % base64string)

	lines = (re.findall(r"'(.*?)'", x, re.DOTALL) for x in urllib2.urlopen(request) if 'new AAA' in x)
	q = dict((vv[0], vv[1]) for vv in lines if vv)
	require 'win32ole'

	class MediaPlayer

	def initialize
	@player = WIN32OLE.new('WMPlayer.OCX')
	end

	def songs
	s = @player.mediacollection.getByAttribute("MediaType","Audio")
	require 'httparty'

	response = HTTParty.get('https://1.ravenhq.com/docs')
	response = HTTParty.get(response.headers['oauth-source'], :headers => { "Api-Key" => ApiKey })
	auth = "Bearer " + response.body
	response = HTTParty.get('https://1.ravenhq.com/databases/benfulton-SourcedTriples/docs/?start=0&pageSize=10', :headers => { "Authorization" => auth })
	puts response.body, response.code, response.message, response.headers.inspect