Install MicroManager on a Nvidia Jetson

gistfile1.txt

On extrnal drive on Windows

Format sd card as NTFS
open powershell in this drive
shift right click
open powershell here


# Instal dependencies
# Here you have debian packages you can install with sudo apt-get install
# Find equivalent packages for others distributions:
#
# subversion build-essential \
# autoconf automake libtool pkg-config \
# libboost1.54-all-dev zlib1g-dev swig \
# openjdk-7-jdk ant python-dev python-numpy-dev

mkdir mm/
cd mm/

# Save directory path
MM_DIR=$(pwd)

# Get ImageJ (use it even if you already have another copy of ImageJ or Fiji)
wget http://imagej.nih.gov/ij/download/zips/ij148.zip
unzip ij148.zip

# Retrieve MM source code (can be long) - user/passw: guest/guest
#svn co https://valelab.ucsf.edu/svn/micromanager2/trunk micro-manager
git clone github
checkout mm2
svn co https://valelab.ucsf.edu/svn/3rdpartypublic

replace buildscripts/deptfetch.xml with newer master branch version

$ svn cleanup 3rdpartypublic
$ svn up up 3rdpartypublic

# Build MM
cd micro-manager/

./autogen.sh

./configure --prefix=$MM_DIR/ImageJ --enable-imagej-plugin=$MM_DIR/ImageJ --with-python

# Download build dependencies
make fetchdeps   # Required since SVN r14001-r14016

# Build binaries (can take a while)
make

# Install MM as ImageJ plugin
make install

# Run MM
# $MM_DIR/mmimagej