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November 20, 2017 00:23
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dssp (homebrew/science/dssp) on macOS 10.12.6 - Homebrew build logs
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| Homebrew build logs for homebrew/science/dssp on macOS 10.12.6 | |
| Build date: 2017-11-19 18:19:46 |
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| HOMEBREW_VERSION: 1.3.7 | |
| ORIGIN: https://github.com/Homebrew/brew.git | |
| HEAD: 441c212f2dd70f053ee21eac8398c5fe5dfd0551 | |
| Last commit: 9 days ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: 838ebee9b1687887134a042c1a99ee979f6f2ed9 | |
| Core tap last commit: 6 hours ago | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_GIT_CONFIG_FILE: /usr/local/Homebrew/.git/config | |
| CPU: quad-core 64-bit haswell | |
| Homebrew Ruby: 2.3.3 => /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.3/bin/ruby | |
| Clang: 9.0 build 900 | |
| Git: 2.15.0 => /usr/local/bin/git | |
| Curl: 7.54.0 => /usr/bin/curl | |
| Perl: /usr/bin/perl | |
| Python: /usr/local/opt/python/libexec/bin/python => /usr/local/Cellar/python/2.7.13_1/Frameworks/Python.framework/Versions/2.7/bin/python2.7 | |
| Ruby: /usr/local/bin/ruby => /usr/local/Cellar/ruby/2.4.2_1/bin/ruby | |
| Java: 1.8.0_112 | |
| macOS: 10.12.6-x86_64 | |
| Xcode: N/A | |
| CLT: 9.1.0.0.1.1508540944 | |
| X11: 2.7.11 => /opt/X11 |
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| Your system is ready to brew. |
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| homebrew/science/dssp |
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| Formula: dssp | |
| Tap: homebrew/science | |
| Path: /usr/local/Homebrew/Library/Taps/homebrew/homebrew-science/dssp.rb |
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| 2017-11-19 18:19:46 -0600 | |
| make | |
| install | |
| DEST_DIR=/usr/local/Cellar/dssp/2.2.1_3 | |
| MAN_DIR=/usr/local/Cellar/dssp/2.2.1_3/share/man/man1 | |
| makefile:55: obj/mkdssp.d: No such file or directory | |
| makefile:55: obj/dssp.d: No such file or directory | |
| makefile:55: obj/primitives-3d.d: No such file or directory | |
| makefile:55: obj/structure.d: No such file or directory | |
| makefile:55: obj/utils.d: No such file or directory | |
| makefile:55: obj/mas.d: No such file or directory | |
| makefile:55: obj/iocif.d: No such file or directory | |
| compiling obj/mkdssp.o | |
| compiling obj/dssp.o | |
| compiling obj/primitives-3d.o | |
| compiling obj/structure.o | |
| In file included from src/primitives-3d.cpp:16: | |
| src/primitives-3d.h:12:10: fatal error: 'boost/tr1/tuple.hpp' file not found | |
| #include <boost/tr1/tuple.hpp> | |
| ^~~~~~~~~~~~~~~~~~~~~ | |
| 1 error generated. | |
| make: *** [obj/primitives-3d.o] Error 1 | |
| make: *** Waiting for unfinished jobs.... | |
| In file included from src/dssp.cpp:23: | |
| In file included from src/structure.h:8: | |
| src/primitives-3d.h:12:10: fatal error: 'boost/tr1/tuple.hpp' file not found | |
| #include <boost/tr1/tuple.hpp> | |
| ^~~~~~~~~~~~~~~~~~~~~ | |
| 1 error generated. | |
| make: *** [obj/dssp.o] Error 1 | |
| In file included from src/mkdssp.cpp:27: | |
| In file included from src/structure.h:8: | |
| src/primitives-3d.h:12:10: fatal error: 'boost/tr1/tuple.hpp' file not found | |
| #include <boost/tr1/tuple.hpp> | |
| ^~~~~~~~~~~~~~~~~~~~~ | |
| 1 error generated. | |
| make: *** [obj/mkdssp.o] Error 1 | |
| In file included from src/structure.cpp:25: | |
| In file included from src/structure.h:8: | |
| src/primitives-3d.h:12:10: fatal error: 'boost/tr1/tuple.hpp' file not found | |
| #include <boost/tr1/tuple.hpp> | |
| ^~~~~~~~~~~~~~~~~~~~~ | |
| 1 error generated. | |
| make: *** [obj/structure.o] Error 1 | |
| HOMEBREW_VERSION: 1.3.7 | |
| ORIGIN: https://github.com/Homebrew/brew.git | |
| HEAD: 441c212f2dd70f053ee21eac8398c5fe5dfd0551 | |
| Last commit: 9 days ago | |
| Core tap ORIGIN: https://github.com/Homebrew/homebrew-core | |
| Core tap HEAD: 838ebee9b1687887134a042c1a99ee979f6f2ed9 | |
| Core tap last commit: 6 hours ago | |
| HOMEBREW_PREFIX: /usr/local | |
| HOMEBREW_ARCHFLAGS: | |
| HOMEBREW_CACHE: /Users/ben/Library/Caches/Homebrew | |
| HOMEBREW_CC: clang | |
| HOMEBREW_CCCFG: sa | |
| HOMEBREW_CXX: clang++ | |
| HOMEBREW_DEPENDENCIES: boost | |
| HOMEBREW_ENABLE_AUTO_UPDATE_MIGRATION: 1 | |
| HOMEBREW_ERROR_PIPE: /tmp/homebrew20171119-39574-1hjlb1m/socket | |
| HOMEBREW_FORMULA_PREFIX: /usr/local/Cellar/dssp/2.2.1_3 | |
| HOMEBREW_GIT_CONFIG_FILE: /usr/local/Homebrew/.git/config | |
| HOMEBREW_ISYSTEM_PATHS: /usr/local/include:/usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| HOMEBREW_LIBRARY_PATHS: /usr/local/lib:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| HOMEBREW_OPT: /usr/local/opt | |
| HOMEBREW_OPTFLAGS: -march=native | |
| HOMEBREW_OPTIMIZATION_LEVEL: Os | |
| HOMEBREW_PREFER_CLT_PROXIES: 1 | |
| HOMEBREW_TEMP: /tmp | |
| CPU: quad-core 64-bit haswell | |
| Homebrew Ruby: 2.3.3 => /usr/local/Homebrew/Library/Homebrew/vendor/portable-ruby/2.3.3/bin/ruby | |
| Clang: 9.0 build 900 | |
| Git: 2.13.6 => /Library/Developer/CommandLineTools/usr/bin/git | |
| Curl: 7.54.0 => /usr/bin/curl | |
| Perl: N/A | |
| Python: /usr/local/opt/python/libexec/bin/python => /usr/local/Cellar/python/2.7.13_1/Frameworks/Python.framework/Versions/2.7/bin/python2.7 | |
| Ruby: N/A | |
| Java: 1.8.0_112 | |
| macOS: 10.12.6-x86_64 | |
| Xcode: N/A | |
| CLT: 9.1.0.0.1.1508540944 | |
| X11: 2.7.11 => /opt/X11 | |
| HOMEBREW_CC: clang | |
| HOMEBREW_CXX: clang++ | |
| MAKEFLAGS: -j4 | |
| CMAKE_PREFIX_PATH: /usr/local | |
| CMAKE_INCLUDE_PATH: /usr/include/libxml2:/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| CMAKE_LIBRARY_PATH: /System/Library/Frameworks/OpenGL.framework/Versions/Current/Libraries | |
| MACOSX_DEPLOYMENT_TARGET: 10.12 | |
| PKG_CONFIG_LIBDIR: /usr/lib/pkgconfig:/usr/local/Homebrew/Library/Homebrew/os/mac/pkgconfig/10.12 | |
| ACLOCAL_PATH: /usr/local/share/aclocal | |
| PATH: /usr/local/Homebrew/Library/Homebrew/shims/super:/usr/bin:/bin:/usr/sbin:/sbin |
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| g++ called with: -MD -c -o obj/dssp.o src/dssp.cpp -I/usr/local/opt/boost/include -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION="2.2.1" -DNDEBUG | |
| superenv removed: -g -Wall -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -MD -c -o obj/dssp.o src/dssp.cpp -I/usr/local/opt/boost/include -iquote src -Wno-multichar -pthread -DUSE_COMPRESSION -DLINUX -DVERSION="2.2.1" -DNDEBUG -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| g++ called with: -MD -c -o obj/mkdssp.o src/mkdssp.cpp -I/usr/local/opt/boost/include -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION="2.2.1" -DNDEBUG | |
| superenv removed: -g -Wall -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -MD -c -o obj/mkdssp.o src/mkdssp.cpp -I/usr/local/opt/boost/include -iquote src -Wno-multichar -pthread -DUSE_COMPRESSION -DLINUX -DVERSION="2.2.1" -DNDEBUG -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| g++ called with: -MD -c -o obj/primitives-3d.o src/primitives-3d.cpp -I/usr/local/opt/boost/include -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION="2.2.1" -DNDEBUG | |
| superenv removed: -g -Wall -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -MD -c -o obj/primitives-3d.o src/primitives-3d.cpp -I/usr/local/opt/boost/include -iquote src -Wno-multichar -pthread -DUSE_COMPRESSION -DLINUX -DVERSION="2.2.1" -DNDEBUG -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| g++ called with: -MD -c -o obj/structure.o src/structure.cpp -I/usr/local/opt/boost/include -iquote src -g -Wall -Wno-multichar -pthread -O3 -DUSE_COMPRESSION -DLINUX -DVERSION="2.2.1" -DNDEBUG | |
| superenv removed: -g -Wall -O3 | |
| superenv added: -pipe -w -Os -march=native -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
| superenv executed: clang++ -pipe -w -Os -march=native -MD -c -o obj/structure.o src/structure.cpp -I/usr/local/opt/boost/include -iquote src -Wno-multichar -pthread -DUSE_COMPRESSION -DLINUX -DVERSION="2.2.1" -DNDEBUG -isystem/usr/local/include -isystem/usr/include/libxml2 -isystem/System/Library/Frameworks/OpenGL.framework/Versions/Current/Headers | |
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