Ben Jeffery benjeffery

## pure_python.py
import time

import numpy as np
import numba
import tskit

#@numba.njit(cache=True)
def decode(s):
    stack = [0]*10000
    stack_p = 0

## newick_play.py
import time

import numpy as np
import numba
import tskit

@numba.njit(cache=True)
def decode(s):
    stack = np.zeros(10000, dtype=np.int32)
    stack_p = np.int32(0)

## tskit 0.3.6.ipynb

      
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## tskit 0.3.6.ipynb

      
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                / tskit 0.3.6.ipynb
            
            
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              May 14, 2021 22:58
            
          
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## tskit 0.3.6.html
<!DOCTYPE html>
<html>
<head><meta charset="utf-8" />
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>tskit 0.3.6</title><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.1.10/require.min.js"></script>


## tskit 0.3.6.ipynb

      
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              May 14, 2021 22:56
            
          
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## gist:b9c03646252dafdab75c25586e32f739
static PyObject *
IndividualTable_extend(IndividualTable *self, PyObject *args, PyObject *kwds)
{
    PyObject *ret = NULL;
    IndividualTable *other = NULL;
    PyObject *obj_row_indexes = Py_None;
    PyArrayObject *row_indexes = NULL;
    tsk_id_t *row_indexes_data = NULL;
    tsk_size_t num_rows = 0;
    int err;

## 1554.py
import math
import numpy as np
import msprime

seed = 1102
divergence_time = 50
####Variables####
# These are the DIPLOID counts
sequence_length = 100000
Ne_A = 10000

## main.md

      
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              Last active
              September 23, 2020 15:05
            
          
    The default repos of all the tskit-dev repos is changing from master to "main" at 1200UTC on 20200928. (Monday)
The following repos are affected:

administrative
containers
.github
kastore
msprime
msprime-1.0-paper


## covid_testing_alarm.py
import datetime
import time
import requests
import playsound #You might need to install pygobject if you get an error about missing "gi" module for this.

playsound.playsound("ding.mp3")  #You'll need a file here that is noisy
while True:
    try:
        r = requests.post(
            "https://ads-prd-gov-1-sp.test-for-coronavirus.service.gov.uk/testcentres/availabilityquery",
	import time

	import numpy as np
	import numba
	import tskit

	#@numba.njit(cache=True)
	def decode(s):
	stack = [0]*10000
	stack_p = 0
	<!DOCTYPE html>
	<html>
	<head><meta charset="utf-8" />
	<meta name="viewport" content="width=device-width, initial-scale=1.0">

	<title>tskit 0.3.6</title><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.1.10/require.min.js"></script>
	static PyObject *
	IndividualTable_extend(IndividualTable self, PyObject args, PyObject *kwds)
	{
	PyObject *ret = NULL;
	IndividualTable *other = NULL;
	PyObject *obj_row_indexes = Py_None;
	PyArrayObject *row_indexes = NULL;
	tsk_id_t *row_indexes_data = NULL;
	tsk_size_t num_rows = 0;
	int err;
	import math
	import numpy as np
	import msprime

	seed = 1102
	divergence_time = 50
	####Variables####
	# These are the DIPLOID counts
	sequence_length = 100000
	Ne_A = 10000
	import datetime
	import time
	import requests
	import playsound #You might need to install pygobject if you get an error about missing "gi" module for this.

	playsound.playsound("ding.mp3") #You'll need a file here that is noisy
	while True:
	try:
	r = requests.post(
	"https://ads-prd-gov-1-sp.test-for-coronavirus.service.gov.uk/testcentres/availabilityquery",