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Created February 14, 2013 19:44
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XCode gcc configuration debugging
This file contains any messages produced by compilers while
running configure, to aid debugging if configure makes a mistake.
It was created by libmesh configure 0.9.1pre, which was
generated by GNU Autoconf 2.69. Invocation command line was
$ ../configure --prefix=/Users/benkirk/codes/libmesh/xcode/_inst
## --------- ##
## Platform. ##
## --------- ##
hostname = elfboy
uname -m = x86_64
uname -r = 12.2.1
uname -s = Darwin
uname -v = Darwin Kernel Version 12.2.1: Thu Oct 18 16:32:48 PDT 2012; root:xnu-2050.20.9~2/RELEASE_X86_64
/usr/bin/uname -p = i386
/bin/uname -X = unknown
/bin/arch = unknown
/usr/bin/arch -k = unknown
/usr/convex/getsysinfo = unknown
/usr/bin/hostinfo = Mach kernel version:
Darwin Kernel Version 12.2.1: Thu Oct 18 16:32:48 PDT 2012; root:xnu-2050.20.9~2/RELEASE_X86_64
Kernel configured for up to 8 processors.
4 processors are physically available.
8 processors are logically available.
Processor type: i486 (Intel 80486)
Processors active: 0 1 2 3 4 5 6 7
Primary memory available: 16.00 gigabytes
Default processor set: 118 tasks, 548 threads, 8 processors
Load average: 0.76, Mach factor: 7.23
/bin/machine = unknown
/usr/bin/oslevel = unknown
/bin/universe = unknown
PATH: /Developer/usr/bin
PATH: /Applications/Tec360_2012r1/bin
PATH: /Applications/Doxygen.app/Contents/Resources
PATH: /usr/bin
PATH: /bin
PATH: /usr/sbin
PATH: /sbin
PATH: /opt/X11/bin
PATH: /usr/texbin
PATH: /usr/X11/bin
## ----------- ##
## Core tests. ##
## ----------- ##
configure:3436: result: ---------------------------------------------
configure:3438: result: ----------- Configuring libMesh -------------
configure:3440: result: ---------------------------------------------
configure:3484: checking build system type
configure:3498: result: x86_64-apple-darwin12.2.1
configure:3518: checking host system type
configure:3531: result: x86_64-apple-darwin12.2.1
configure:3551: checking target system type
configure:3564: result: x86_64-apple-darwin12.2.1
configure:3637: checking for a BSD-compatible install
configure:3705: result: /usr/bin/install -c
configure:3716: checking whether build environment is sane
configure:3771: result: yes
configure:3922: checking for a thread-safe mkdir -p
configure:3961: result: ../build-aux/install-sh -c -d
configure:3968: checking for gawk
configure:3998: result: no
configure:3968: checking for mawk
configure:3998: result: no
configure:3968: checking for nawk
configure:3998: result: no
configure:3968: checking for awk
configure:3984: found /usr/bin/awk
configure:3995: result: awk
configure:4006: checking whether make sets $(MAKE)
configure:4028: result: yes
configure:4109: checking how to create a ustar tar archive
configure:4122: tar --version
bsdtar 2.8.3 - libarchive 2.8.3
configure:4125: $? = 0
configure:4165: tardir=conftest.dir && eval tar --format=ustar -chf - "$tardir" >conftest.tar
configure:4168: $? = 0
configure:4172: tar -xf - <conftest.tar
configure:4175: $? = 0
configure:4188: result: gnutar
configure:4208: checking whether make supports nested variables
configure:4225: result: yes
configure:4241: checking whether to enable maintainer-specific portions of Makefiles
configure:4250: result: yes
configure:4270: checking for src/base/libmesh.C
configure:4283: result: no
configure:4292: result: <<< Configuring build directory for VPATH build >>>
configure:4330: checking for style of include used by make
configure:4358: result: GNU
configure:4478: checking for mpicxx
configure:4508: result: no
configure:4478: checking for mpiCC
configure:4508: result: no
configure:4478: checking for mpicc
configure:4508: result: no
configure:4478: checking for g++
configure:4494: found /usr/bin/g++
configure:4505: result: g++
configure:4532: checking for C++ compiler version
configure:4541: g++ --version >&5
i686-apple-darwin11-llvm-g++-4.2 (GCC) 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.11.00)
Copyright (C) 2007 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:4552: $? = 0
configure:4541: g++ -v >&5
Using built-in specs.
Target: i686-apple-darwin11
Configured with: /private/var/tmp/llvmgcc42/llvmgcc42-2336.11~67/src/configure --disable-checking --enable-werror --prefix=/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2 --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-prefix=llvm- --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --with-slibdir=/usr/lib --build=i686-apple-darwin11 --enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2336.11~67/dst-llvmCore/Developer/usr/local --program-prefix=i686-apple-darwin11- --host=x86_64-apple-darwin11 --target=i686-apple-darwin11 --with-gxx-include-dir=/usr/include/c++/4.2.1
Thread model: posix
gcc version 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.11.00)
configure:4552: $? = 0
configure:4541: g++ -V >&5
llvm-g++-4.2: argument to `-V' is missing
configure:4552: $? = 1
configure:4541: g++ -qversion >&5
i686-apple-darwin11-llvm-g++-4.2: no input files
configure:4552: $? = 1
configure:4572: checking whether the C++ compiler works
configure:4594: g++ conftest.cpp >&5
configure:4598: $? = 0
configure:4646: result: yes
configure:4649: checking for C++ compiler default output file name
configure:4651: result: a.out
configure:4657: checking for suffix of executables
configure:4664: g++ -o conftest conftest.cpp >&5
configure:4668: $? = 0
configure:4690: result:
configure:4712: checking whether we are cross compiling
configure:4720: g++ -o conftest conftest.cpp >&5
configure:4724: $? = 0
configure:4731: ./conftest
configure:4735: $? = 0
configure:4750: result: no
configure:4755: checking for suffix of object files
configure:4777: g++ -c conftest.cpp >&5
configure:4781: $? = 0
configure:4802: result: o
configure:4806: checking whether we are using the GNU C++ compiler
configure:4825: g++ -c conftest.cpp >&5
configure:4825: $? = 0
configure:4834: result: yes
configure:4843: checking whether g++ accepts -g
configure:4863: g++ -c -g conftest.cpp >&5
configure:4863: $? = 0
configure:4904: result: yes
configure:4929: checking dependency style of g++
configure:5040: result: gcc3
configure:5113: result: <<< C++ compiler is gcc-4.2 >>>
configure:5198: result: <<< C++ compiler is built by Apple >>>
configure:5506: checking for mpicc
configure:5536: result: no
configure:5506: checking for gcc
configure:5522: found /usr/bin/gcc
configure:5533: result: gcc
configure:5564: checking for C compiler version
configure:5573: gcc --version >&5
i686-apple-darwin11-llvm-gcc-4.2 (GCC) 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.11.00)
Copyright (C) 2007 Free Software Foundation, Inc.
This is free software; see the source for copying conditions. There is NO
warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
configure:5584: $? = 0
configure:5573: gcc -v >&5
Using built-in specs.
Target: i686-apple-darwin11
Configured with: /private/var/tmp/llvmgcc42/llvmgcc42-2336.11~67/src/configure --disable-checking --enable-werror --prefix=/Applications/Xcode.app/Contents/Developer/usr/llvm-gcc-4.2 --mandir=/share/man --enable-languages=c,objc,c++,obj-c++ --program-prefix=llvm- --program-transform-name=/^[cg][^.-]*$/s/$/-4.2/ --with-slibdir=/usr/lib --build=i686-apple-darwin11 --enable-llvm=/private/var/tmp/llvmgcc42/llvmgcc42-2336.11~67/dst-llvmCore/Developer/usr/local --program-prefix=i686-apple-darwin11- --host=x86_64-apple-darwin11 --target=i686-apple-darwin11 --with-gxx-include-dir=/usr/include/c++/4.2.1
Thread model: posix
gcc version 4.2.1 (Based on Apple Inc. build 5658) (LLVM build 2336.11.00)
configure:5584: $? = 0
configure:5573: gcc -V >&5
llvm-gcc-4.2: argument to `-V' is missing
configure:5584: $? = 1
configure:5573: gcc -qversion >&5
i686-apple-darwin11-llvm-gcc-4.2: no input files
configure:5584: $? = 1
configure:5588: checking whether we are using the GNU C compiler
configure:5607: gcc -c conftest.c >&5
configure:5607: $? = 0
configure:5616: result: yes
configure:5625: checking whether gcc accepts -g
configure:5645: gcc -c -g conftest.c >&5
configure:5645: $? = 0
configure:5686: result: yes
configure:5703: checking for gcc option to accept ISO C89
configure:5766: gcc -c conftest.c >&5
configure:5766: $? = 0
configure:5779: result: none needed
configure:5801: checking dependency style of gcc
configure:5912: result: gcc3
configure:6025: checking for mpif90
configure:6055: result: no
configure:6025: checking for gfortran
configure:6055: result: no
configure:6025: checking for ifort
configure:6055: result: no
configure:6025: checking for pgf90
configure:6055: result: no
configure:6025: checking for xlf95
configure:6055: result: no
configure:6078: checking for Fortran compiler version
configure:6087: --version >&5
../configure: line 6089: --version: command not found
configure:6098: $? = 127
configure:6087: -v >&5
../configure: line 6089: -v: command not found
configure:6098: $? = 127
configure:6087: -V >&5
../configure: line 6089: -V: command not found
configure:6098: $? = 127
configure:6087: -qversion >&5
../configure: line 6089: -qversion: command not found
configure:6098: $? = 127
configure:6107: checking whether we are using the GNU Fortran compiler
configure:6120: -c conftest.F >&5
../configure: line 2138: -c: command not found
configure:6120: $? = 127
configure: failed program was:
| program main
| #ifndef __GNUC__
| choke me
| #endif
|
| end
configure:6129: result: no
configure:6135: checking whether accepts -g
configure:6146: -c -g conftest.f >&5
../configure: line 2138: -c: command not found
configure:6146: $? = 127
configure: failed program was:
| program main
|
| end
configure:6154: result: no
configure:6256: checking for mpif77
configure:6286: result: no
configure:6309: checking for Fortran 77 compiler version
configure:6318: --version >&5
../configure: line 6320: --version: command not found
configure:6329: $? = 127
configure:6318: -v >&5
../configure: line 6320: -v: command not found
configure:6329: $? = 127
configure:6318: -V >&5
../configure: line 6320: -V: command not found
configure:6329: $? = 127
configure:6318: -qversion >&5
../configure: line 6320: -qversion: command not found
configure:6329: $? = 127
configure:6338: checking whether we are using the GNU Fortran 77 compiler
configure:6351: -c conftest.F >&5
../configure: line 2176: -c: command not found
configure:6351: $? = 127
configure: failed program was:
| program main
| #ifndef __GNUC__
| choke me
| #endif
|
| end
configure:6360: result: no
configure:6366: checking whether accepts -g
configure:6377: -c -g conftest.f >&5
../configure: line 2176: -c: command not found
configure:6377: $? = 127
configure: failed program was:
| program main
|
| end
configure:6385: result: no
configure:6470: result: << Disabling GLIBCXX debugging on Darwin >>>
configure:7176: result: No build methods specified, defaulting to "dbg devel opt"
configure:7183: result: <<< Configuring libMesh with methods "dbg devel opt" >>>
configure:7348: checking how to print strings
configure:7375: result: printf
configure:7396: checking for a sed that does not truncate output
configure:7460: result: /usr/bin/sed
configure:7478: checking for grep that handles long lines and -e
configure:7536: result: /usr/bin/grep
configure:7541: checking for egrep
configure:7603: result: /usr/bin/grep -E
configure:7608: checking for fgrep
configure:7670: result: /usr/bin/grep -F
configure:7705: checking for ld used by gcc
configure:7772: result: /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld
configure:7779: checking if the linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) is GNU ld
configure:7794: result: no
configure:7806: checking for BSD- or MS-compatible name lister (nm)
configure:7855: result: /usr/bin/nm
configure:7985: checking the name lister (/usr/bin/nm) interface
configure:7992: g++ -c conftest.cpp >&5
configure:7995: /usr/bin/nm "conftest.o"
configure:7998: output
0000000000000000 S _some_variable
configure:8005: result: BSD nm
configure:8008: checking whether ln -s works
configure:8012: result: yes
configure:8020: checking the maximum length of command line arguments
configure:8150: result: 196608
configure:8167: checking whether the shell understands some XSI constructs
configure:8177: result: yes
configure:8181: checking whether the shell understands "+="
configure:8187: result: yes
configure:8222: checking how to convert x86_64-apple-darwin12.2.1 file names to x86_64-apple-darwin12.2.1 format
configure:8262: result: func_convert_file_noop
configure:8269: checking how to convert x86_64-apple-darwin12.2.1 file names to toolchain format
configure:8289: result: func_convert_file_noop
configure:8296: checking for /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld option to reload object files
configure:8303: result: -r
configure:8377: checking for objdump
configure:8407: result: no
configure:8436: checking how to recognize dependent libraries
configure:8638: result: pass_all
configure:8723: checking for dlltool
configure:8753: result: no
configure:8783: checking how to associate runtime and link libraries
configure:8810: result: printf %s\n
configure:8870: checking for ar
configure:8886: found /usr/bin/ar
configure:8897: result: ar
configure:8934: checking for archiver @FILE support
configure:8951: g++ -c conftest.cpp >&5
configure:8951: $? = 0
configure:8954: ar cru libconftest.a @conftest.lst >&5
ar: @conftest.lst: No such file or directory
configure:8957: $? = 1
configure:8977: result: no
configure:9035: checking for strip
configure:9051: found /usr/bin/strip
configure:9062: result: strip
configure:9134: checking for ranlib
configure:9150: found /usr/bin/ranlib
configure:9161: result: ranlib
configure:9263: checking command to parse /usr/bin/nm output from gcc object
configure:9383: g++ -c conftest.cpp >&5
configure:9386: $? = 0
configure:9390: /usr/bin/nm conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*\([_A-Za-z][_A-Za-z0-9]*\)$/\1 \2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:9393: $? = 0
cannot find nm_test_var in conftest.nm
configure:9383: g++ -c conftest.cpp >&5
configure:9386: $? = 0
configure:9390: /usr/bin/nm conftest.o \| sed -n -e 's/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p' | sed '/ __gnu_lto/d' \> conftest.nm
configure:9393: $? = 0
configure:9459: g++ -o conftest conftest.cpp conftstm.o >&5
configure:9462: $? = 0
configure:9500: result: ok
configure:9537: checking for sysroot
configure:9567: result: no
configure:9823: checking for mt
configure:9853: result: no
configure:9873: checking if : is a manifest tool
configure:9879: : '-?'
configure:9887: result: no
configure:9943: checking for dsymutil
configure:9959: found /usr/bin/dsymutil
configure:9970: result: dsymutil
configure:10035: checking for nmedit
configure:10051: found /usr/bin/nmedit
configure:10062: result: nmedit
configure:10127: checking for lipo
configure:10143: found /usr/bin/lipo
configure:10154: result: lipo
configure:10219: checking for otool
configure:10235: found /usr/bin/otool
configure:10246: result: otool
configure:10311: checking for otool64
configure:10341: result: no
configure:10386: checking for -single_module linker flag
gcc -o libconftest.dylib -dynamiclib -Wl,-single_module conftest.c
configure:10419: result: yes
configure:10422: checking for -exported_symbols_list linker flag
configure:10442: g++ -o conftest -Wl,-exported_symbols_list,conftest.sym conftest.cpp >&5
configure:10442: $? = 0
configure:10452: result: yes
configure:10455: checking for -force_load linker flag
gcc -c -o conftest.o conftest.c
ar cru libconftest.a conftest.o
ranlib libconftest.a
gcc -o conftest conftest.c -Wl,-force_load,./libconftest.a
configure:10487: result: yes
configure:10529: checking how to run the C preprocessor
configure:10560: gcc -E conftest.c
configure:10560: $? = 0
configure:10574: gcc -E conftest.c
conftest.c:12:28: error: ac_nonexistent.h: No such file or directory
configure:10574: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:10599: result: gcc -E
configure:10619: gcc -E conftest.c
configure:10619: $? = 0
configure:10633: gcc -E conftest.c
conftest.c:12:28: error: ac_nonexistent.h: No such file or directory
configure:10633: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:10662: checking for ANSI C header files
configure:10682: gcc -c conftest.c >&5
configure:10682: $? = 0
configure:10755: gcc -o conftest conftest.c >&5
configure:10755: $? = 0
configure:10755: ./conftest
configure:10755: $? = 0
configure:10766: result: yes
configure:10779: checking for sys/types.h
configure:10779: gcc -c conftest.c >&5
configure:10779: $? = 0
configure:10779: result: yes
configure:10779: checking for sys/stat.h
configure:10779: gcc -c conftest.c >&5
configure:10779: $? = 0
configure:10779: result: yes
configure:10779: checking for stdlib.h
configure:10779: gcc -c conftest.c >&5
configure:10779: $? = 0
configure:10779: result: yes
configure:10779: checking for string.h
configure:10779: gcc -c conftest.c >&5
configure:10779: $? = 0
configure:10779: result: yes
configure:10779: checking for memory.h
configure:10779: gcc -c conftest.c >&5
configure:10779: $? = 0
configure:10779: result: yes
configure:10779: checking for strings.h
configure:10779: gcc -c conftest.c >&5
configure:10779: $? = 0
configure:10779: result: yes
configure:10779: checking for inttypes.h
configure:10779: gcc -c conftest.c >&5
configure:10779: $? = 0
configure:10779: result: yes
configure:10779: checking for stdint.h
configure:10779: gcc -c conftest.c >&5
configure:10779: $? = 0
configure:10779: result: yes
configure:10779: checking for unistd.h
configure:10779: gcc -c conftest.c >&5
configure:10779: $? = 0
configure:10779: result: yes
configure:10793: checking for dlfcn.h
configure:10793: gcc -c conftest.c >&5
configure:10793: $? = 0
configure:10793: result: yes
configure:11009: checking for objdir
configure:11024: result: .libs
configure:11295: checking if gcc supports -fno-rtti -fno-exceptions
configure:11313: gcc -c -fno-rtti -fno-exceptions conftest.c >&5
cc1: warning: command line option "-fno-rtti" is valid for C++/ObjC++ but not for C
configure:11317: $? = 0
configure:11330: result: no
configure:11657: checking for gcc option to produce PIC
configure:11664: result: -fno-common -DPIC
configure:11672: checking if gcc PIC flag -fno-common -DPIC works
configure:11690: gcc -c -fno-common -DPIC -DPIC conftest.c >&5
configure:11694: $? = 0
configure:11707: result: yes
configure:11736: checking if gcc static flag -static works
configure:11764: result: no
configure:11779: checking if gcc supports -c -o file.o
configure:11800: gcc -c -o out/conftest2.o conftest.c >&5
configure:11804: $? = 0
configure:11826: result: yes
configure:11834: checking if gcc supports -c -o file.o
configure:11881: result: yes
configure:11914: checking whether the gcc linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries
configure:13067: result: yes
configure:13307: checking dynamic linker characteristics
configure:14040: result: darwin12.2.1 dyld
configure:14147: checking how to hardcode library paths into programs
configure:14172: result: immediate
configure:14712: checking whether stripping libraries is possible
configure:14726: result: yes
configure:14752: checking if libtool supports shared libraries
configure:14754: result: yes
configure:14757: checking whether to build shared libraries
configure:14778: result: yes
configure:14781: checking whether to build static libraries
configure:14785: result: no
configure:14808: checking how to run the C++ preprocessor
configure:14835: g++ -E conftest.cpp
configure:14835: $? = 0
configure:14849: g++ -E conftest.cpp
conftest.cpp:24:28: error: ac_nonexistent.h: No such file or directory
configure:14849: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:14874: result: g++ -E
configure:14894: g++ -E conftest.cpp
configure:14894: $? = 0
configure:14908: g++ -E conftest.cpp
conftest.cpp:24:28: error: ac_nonexistent.h: No such file or directory
configure:14908: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| /* end confdefs.h. */
| #include <ac_nonexistent.h>
configure:15077: checking for ld used by g++
configure:15144: result: /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld
configure:15151: checking if the linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) is GNU ld
configure:15166: result: no
configure:15221: checking whether the g++ linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries
configure:16226: result: yes
configure:16262: g++ -c conftest.cpp >&5
configure:16265: $? = 0
configure:16785: checking for g++ option to produce PIC
configure:16792: result: -fno-common -DPIC
configure:16800: checking if g++ PIC flag -fno-common -DPIC works
configure:16818: g++ -c -fno-common -DPIC -DPIC conftest.cpp >&5
configure:16822: $? = 0
configure:16835: result: yes
configure:16858: checking if g++ static flag -static works
configure:16886: result: no
configure:16898: checking if g++ supports -c -o file.o
configure:16919: g++ -c -o out/conftest2.o conftest.cpp >&5
configure:16923: $? = 0
configure:16945: result: yes
configure:16950: checking if g++ supports -c -o file.o
configure:16997: result: yes
configure:17027: checking whether the g++ linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries
configure:17063: result: yes
configure:17204: checking dynamic linker characteristics
configure:17871: result: darwin12.2.1 dyld
configure:17924: checking how to hardcode library paths into programs
configure:17949: result: immediate
configure:23603: checking Major version
configure:23605: result: 0
configure:23607: checking Minor version
configure:23609: result: 9
configure:23611: checking Point version
configure:23613: result: 1
configure:23658: checking whether ln -s works
configure:23662: result: yes
configure:23682: checking for a sed that does not truncate output
configure:23746: result: /usr/bin/sed
configure:23760: checking for perl
configure:23778: found /usr/bin/perl
configure:23790: result: /usr/bin/perl
configure:23814: checking for pkg-config
configure:23845: result: no
configure:23859: checking whether the compiler implements namespaces
configure:23882: g++ -c conftest.cpp >&5
configure:23882: $? = 0
configure:23896: result: yes
configure:23905: result: ---------------------------------------------
configure:23907: result: ------- Configuring compiler features -------
configure:23909: result: ---------------------------------------------
configure:23984: result: <<< Default floating point is double precision (double) >>>
configure:24022: checking for C/C++ restrict keyword
configure:24047: g++ -c conftest.cpp >&5
configure:24047: $? = 0
configure:24055: result: __restrict
configure:24092: result: <<< Configuring library with getpwuid >>>
configure:24114: result: <<< Configuring library with exception throwing support >>>
configure:24128: checking size of short int
configure:24133: g++ -o conftest conftest.cpp >&5
configure:24133: $? = 0
configure:24133: ./conftest
configure:24133: $? = 0
configure:24147: result: 2
configure:24161: checking size of int
configure:24166: g++ -o conftest conftest.cpp >&5
configure:24166: $? = 0
configure:24166: ./conftest
configure:24166: $? = 0
configure:24180: result: 4
configure:24194: checking size of unsigned int
configure:24199: g++ -o conftest conftest.cpp >&5
configure:24199: $? = 0
configure:24199: ./conftest
configure:24199: $? = 0
configure:24213: result: 4
configure:24227: checking size of long int
configure:24232: g++ -o conftest conftest.cpp >&5
configure:24232: $? = 0
configure:24232: ./conftest
configure:24232: $? = 0
configure:24246: result: 8
configure:24260: checking size of float
configure:24265: g++ -o conftest conftest.cpp >&5
configure:24265: $? = 0
configure:24265: ./conftest
configure:24265: $? = 0
configure:24279: result: 4
configure:24293: checking size of double
configure:24298: g++ -o conftest conftest.cpp >&5
configure:24298: $? = 0
configure:24298: ./conftest
configure:24298: $? = 0
configure:24312: result: 8
configure:24326: checking size of void *
configure:24331: g++ -o conftest conftest.cpp >&5
configure:24331: $? = 0
configure:24331: ./conftest
configure:24331: $? = 0
configure:24345: result: 8
configure:24364: checking size of function_pointer
configure:24369: g++ -o conftest conftest.cpp >&5
configure:24369: $? = 0
configure:24369: ./conftest
configure:24369: $? = 0
configure:24384: result: 8
configure:24399: checking whether the compiler supports Run-Time Type Identification
configure:24434: g++ -c conftest.cpp >&5
configure:24434: $? = 0
configure:24448: result: yes
configure:24464: checking getopt.h usability
configure:24464: g++ -c conftest.cpp >&5
configure:24464: $? = 0
configure:24464: result: yes
configure:24464: checking getopt.h presence
configure:24464: g++ -E conftest.cpp
configure:24464: $? = 0
configure:24464: result: yes
configure:24464: checking for getopt.h
configure:24464: result: yes
configure:24476: checking csignal usability
configure:24476: g++ -c conftest.cpp >&5
configure:24476: $? = 0
configure:24476: result: yes
configure:24476: checking csignal presence
configure:24476: g++ -E conftest.cpp
configure:24476: $? = 0
configure:24476: result: yes
configure:24476: checking for csignal
configure:24476: result: yes
configure:24488: checking sys/resource.h usability
configure:24488: g++ -c conftest.cpp >&5
configure:24488: $? = 0
configure:24488: result: yes
configure:24488: checking sys/resource.h presence
configure:24488: g++ -E conftest.cpp
configure:24488: $? = 0
configure:24488: result: yes
configure:24488: checking for sys/resource.h
configure:24488: result: yes
configure:24498: checking whether the compiler has locale
configure:24525: g++ -c conftest.cpp >&5
configure:24525: $? = 0
configure:24539: result: yes
configure:24547: checking whether the compiler has stringstream
configure:24574: g++ -c conftest.cpp >&5
configure:24574: $? = 0
configure:24588: result: yes
configure:24656: checking fenv.h usability
configure:24656: g++ -c conftest.cpp >&5
configure:24656: $? = 0
configure:24656: result: yes
configure:24656: checking fenv.h presence
configure:24656: g++ -E conftest.cpp
configure:24656: $? = 0
configure:24656: result: yes
configure:24656: checking for fenv.h
configure:24656: result: yes
configure:24668: checking xmmintrin.h usability
configure:24668: g++ -c conftest.cpp >&5
configure:24668: $? = 0
configure:24668: result: yes
configure:24668: checking xmmintrin.h presence
configure:24668: g++ -E conftest.cpp
configure:24668: $? = 0
configure:24668: result: yes
configure:24668: checking for xmmintrin.h
configure:24668: result: yes
configure:24697: g++ -c conftest.cpp >&5
conftest.cpp: In function 'int main()':
conftest.cpp:58: error: 'feenableexcept' was not declared in this scope
configure:24697: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| /* end confdefs.h. */
| #include <fenv.h>
| int
| main ()
| {
| feenableexcept(FE_DIVBYZERO | FE_INVALID);
| ;
| return 0;
| }
configure:24721: g++ -c conftest.cpp >&5
conftest.cpp: In function 'int main()':
conftest.cpp:58: error: 'fedisableexcept' was not declared in this scope
configure:24721: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| /* end confdefs.h. */
| #include <fenv.h>
| int
| main ()
| {
| fedisableexcept(FE_DIVBYZERO | FE_INVALID);
| ;
| return 0;
| }
configure:24747: checking whether the compiler supports std::unordered_multimap
configure:24775: g++ -c conftest.cpp >&5
conftest.cpp:54:25: error: unordered_map: No such file or directory
conftest.cpp: In function 'int main()':
conftest.cpp:59: error: 'unordered_multimap' is not a member of 'std'
conftest.cpp:59: error: expected primary-expression before 'int'
conftest.cpp:59: error: expected `;' before 'int'
conftest.cpp:60: error: 'm' was not declared in this scope
conftest.cpp:60: error: 'make_pair' is not a member of 'std'
conftest.cpp:61: error: 'make_pair' is not a member of 'std'
configure:24775: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| /* end confdefs.h. */
| #include <unordered_map>
| int
| main ()
| {
|
| std::unordered_multimap<int, int> m;
| m.insert(std::make_pair(1, 2));
| m.insert(std::make_pair(1, 3));
| if (m.size() != 2) return 1;
|
| ;
| return 0;
| }
configure:24789: result: no
configure:24812: checking whether the compiler supports std::tr1::unordered_multimap
configure:24840: g++ -c conftest.cpp >&5
configure:24840: $? = 0
configure:24854: result: yes
configure:25077: checking whether the compiler supports std::unordered_map
configure:25103: g++ -c conftest.cpp >&5
conftest.cpp:59:25: error: unordered_map: No such file or directory
conftest.cpp: In function 'int main()':
conftest.cpp:64: error: 'unordered_map' is not a member of 'std'
conftest.cpp:64: error: expected primary-expression before 'int'
conftest.cpp:64: error: expected `;' before 'int'
conftest.cpp:65: error: 'm' was not declared in this scope
conftest.cpp:65: error: 'make_pair' is not a member of 'std'
configure:25103: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| /* end confdefs.h. */
| #include <unordered_map>
| int
| main ()
| {
|
| std::unordered_map<int, int> m;
| m.insert(std::make_pair(1, 2));
|
| ;
| return 0;
| }
configure:25117: result: no
configure:25140: checking whether the compiler supports std::tr1::unordered_map
configure:25166: g++ -c conftest.cpp >&5
configure:25166: $? = 0
configure:25180: result: yes
configure:25401: checking whether the compiler supports std::unordered_set
configure:25427: g++ -c conftest.cpp >&5
conftest.cpp:64:25: error: unordered_set: No such file or directory
conftest.cpp: In function 'int main()':
conftest.cpp:69: error: 'unordered_set' is not a member of 'std'
conftest.cpp:69: error: expected primary-expression before 'int'
conftest.cpp:69: error: expected `;' before 'int'
conftest.cpp:70: error: 'm' was not declared in this scope
conftest.cpp:70: error: 'make_pair' is not a member of 'std'
configure:25427: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::tr1::unordered_map
| #define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| /* end confdefs.h. */
| #include <unordered_set>
| int
| main ()
| {
|
| std::unordered_set<int, int> m;
| m.insert(std::make_pair(1, 2));
|
| ;
| return 0;
| }
configure:25441: result: no
configure:25464: checking whether the compiler supports std::tr1::unordered_set
configure:25490: g++ -c conftest.cpp >&5
configure:25490: $? = 0
configure:25504: result: yes
configure:25918: checking for dlfcn.h
configure:25918: result: yes
configure:25928: checking whether the compiler supports GCC C++ ABI name demangling
configure:25966: g++ -c conftest.cpp >&5
configure:25966: $? = 0
configure:25980: result: yes
configure:25988: checking whether the c++ compiler supports glibc backtrace
configure:26014: g++ -c conftest.cpp >&5
configure:26014: $? = 0
configure:26028: result: yes
configure:26053: checking for OpenMP flag of C++ compiler
configure:26089: g++ -o conftest -fopenmp conftest.cpp >&5
configure:26089: $? = 0
configure:26098: result: -fopenmp
configure:26113: result: <<< Configuring library with OpenMP support >>>
configure:26137: result: ---------------------------------------------
configure:26139: result: ----- Done configuring compiler features ----
configure:26141: result: ---------------------------------------------
configure:26285: result: ---------------------------------------------
configure:26287: result: ----- Configuring core library features -----
configure:26289: result: ---------------------------------------------
configure:26311: result: <<< Configuring library to require ``include "libmesh/etc.h"'' style >>>
configure:26334: result: <<< Configuring library to keep names in libMesh namespace >>>
configure:26386: result: configuring size of boundary_id... 2
configure:26434: result: configuring size of dof_id... 4
configure:26482: result: configuring size of processor_id... 2
configure:26530: result: configuring size of subdomain_id... 2
configure:26594: result: <<< Configuring library with AMR support >>>
configure:26616: result: <<< Configuring library with variational smoother support >>>
configure:26638: result: <<< Configuring library with periodic BC support >>>
configure:26660: result: <<< Configuring library with Dirichlet constraint support >>>
configure:26726: result: <<< Configuring library to use ghosted local vectors >>>
configure:26784: result: <<< Configuring library with higher order p-FEM shapes >>>
configure:26838: result: <<< Configuring library with second derivatives >>>
configure:26859: checking rpc/rpc.h usability
configure:26859: g++ -c conftest.cpp >&5
configure:26859: $? = 0
configure:26859: result: yes
configure:26859: checking rpc/rpc.h presence
configure:26859: g++ -E conftest.cpp
configure:26859: $? = 0
configure:26859: result: yes
configure:26859: checking for rpc/rpc.h
configure:26859: result: yes
configure:26865: checking for xdrstdio_create
configure:26865: g++ -o conftest conftest.cpp >&5
configure:26865: $? = 0
configure:26865: result: yes
configure:26915: result: <<< Configuring library with real number support >>>
configure:26947: result: <<< Configuring library with reference counting support >>>
configure:26996: result: <<< Configuring library example suite support >>>
configure:27009: result: ---------------------------------------------
configure:27011: result: -- Done configuring core library features ---
configure:27013: result: ---------------------------------------------
configure:27073: result: ---------------------------------------------
configure:27075: result: ----- Configuring for optional packages -----
configure:27077: result: ---------------------------------------------
configure:27173: checking for boostlib >= 1.20.0
configure:27244: g++ -c -I/opt/local/include/ conftest.cpp >&5
configure:27244: $? = 0
configure:27246: result: yes
configure:27384: result: <<< Using external boost installation >>>
configure:27739: checking for petscarch
configure:27772: result: no
configure:27798: checking /include/petscversion.h usability
configure:27798: gcc -c conftest.c >&5
conftest.c:123:35: error: /include/petscversion.h: No such file or directory
configure:27798: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::tr1::unordered_map
| #define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::tr1::unordered_set
| #define INCLUDE_UNORDERED_SET <tr1/unordered_set>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLFCN_H 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define HAVE_OPENMP 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_XDR 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_BOOST /**/
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include </include/petscversion.h>
configure:27798: result: no
configure:27798: checking /include/petscversion.h presence
configure:27798: gcc -E conftest.c
conftest.c:90:35: error: /include/petscversion.h: No such file or directory
configure:27798: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::tr1::unordered_map
| #define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::tr1::unordered_set
| #define INCLUDE_UNORDERED_SET <tr1/unordered_set>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLFCN_H 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define HAVE_OPENMP 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_XDR 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_BOOST /**/
| /* end confdefs.h. */
| #include </include/petscversion.h>
configure:27798: result: no
configure:27798: checking for /include/petscversion.h
configure:27798: result: no
configure:27975: result: <<< PETSc disabled. Will try configuring MPI now... >>>
configure:28465: g++ -c conftest.cpp >&5
conftest.cpp:90:17: error: mpi.h: No such file or directory
conftest.cpp: In function 'int main()':
conftest.cpp:94: error: 'MPI_COMM_WORLD' was not declared in this scope
conftest.cpp:94: error: 'MPI_Comm_size' was not declared in this scope
configure:28465: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::tr1::unordered_map
| #define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::tr1::unordered_set
| #define INCLUDE_UNORDERED_SET <tr1/unordered_set>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLFCN_H 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define HAVE_OPENMP 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_XDR 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_BOOST /**/
| /* end confdefs.h. */
| #include <mpi.h>
| int
| main ()
| {
| int np; MPI_Comm_size (MPI_COMM_WORLD, &np);
| ;
| return 0;
| }
configure:28475: result: g++ Compiler Does NOT Support MPI...
configure:29803: checking /usr/include/tbb/task_scheduler_init.h usability
configure:29803: g++ -c conftest.cpp >&5
conftest.cpp:123:50: error: /usr/include/tbb/task_scheduler_init.h: No such file or directory
configure:29803: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::tr1::unordered_map
| #define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::tr1::unordered_set
| #define INCLUDE_UNORDERED_SET <tr1/unordered_set>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLFCN_H 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define HAVE_OPENMP 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_XDR 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_BOOST /**/
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include </usr/include/tbb/task_scheduler_init.h>
configure:29803: result: no
configure:29803: checking /usr/include/tbb/task_scheduler_init.h presence
configure:29803: g++ -E conftest.cpp
conftest.cpp:90:50: error: /usr/include/tbb/task_scheduler_init.h: No such file or directory
configure:29803: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::tr1::unordered_map
| #define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::tr1::unordered_set
| #define INCLUDE_UNORDERED_SET <tr1/unordered_set>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLFCN_H 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define HAVE_OPENMP 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_XDR 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_BOOST /**/
| /* end confdefs.h. */
| #include </usr/include/tbb/task_scheduler_init.h>
configure:29803: result: no
configure:29803: checking for /usr/include/tbb/task_scheduler_init.h
configure:29803: result: no
configure:29903: checking whether the compiler supports std::thread
configure:29929: g++ -c conftest.cpp >&5
conftest.cpp:90:18: error: thread: No such file or directory
conftest.cpp: In function 'int main()':
conftest.cpp:95: error: 'thread' is not a member of 'std'
conftest.cpp:95: error: expected `;' before 't'
conftest.cpp:96: error: 't' was not declared in this scope
configure:29929: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::tr1::unordered_map
| #define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::tr1::unordered_set
| #define INCLUDE_UNORDERED_SET <tr1/unordered_set>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLFCN_H 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define HAVE_OPENMP 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_XDR 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_BOOST /**/
| /* end confdefs.h. */
| #include <thread>
| int
| main ()
| {
|
| std::thread t;
| t.join();
|
| ;
| return 0;
| }
configure:29943: result: no
configure:29952: checking whether TBB supports tbb::tbb_thread
configure:29980: g++ -c conftest.cpp >&5
conftest.cpp:90:28: error: tbb/tbb_thread.h: No such file or directory
conftest.cpp: In function 'int main()':
conftest.cpp:95: error: 'tbb' has not been declared
conftest.cpp:95: error: expected `;' before 't'
conftest.cpp:96: error: 't' was not declared in this scope
configure:29980: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::tr1::unordered_map
| #define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::tr1::unordered_set
| #define INCLUDE_UNORDERED_SET <tr1/unordered_set>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLFCN_H 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define HAVE_OPENMP 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_XDR 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_BOOST /**/
| /* end confdefs.h. */
| #include <tbb/tbb_thread.h>
| int
| main ()
| {
|
| tbb::tbb_thread t;
| t.join();
|
| ;
| return 0;
| }
configure:29996: result: no
configure:30040: result: <<< Configuring library with Laspack support >>>
configure:30092: result: <<< Configuring library with SFC support >>>
configure:30142: checking zlib.h usability
configure:30142: g++ -c conftest.cpp >&5
configure:30142: $? = 0
configure:30142: result: yes
configure:30142: checking zlib.h presence
configure:30142: g++ -E conftest.cpp
configure:30142: $? = 0
configure:30142: result: yes
configure:30142: checking for zlib.h
configure:30142: result: yes
configure:30152: checking for gzopen in -lz
configure:30177: g++ -o conftest conftest.cpp -lz >&5
configure:30177: $? = 0
configure:30186: result: yes
configure:30205: result: <<< Configuring library with gzstreams support >>>
configure:30249: checking for bzip2
configure:30265: found /usr/bin/bzip2
configure:30277: result: bzip2
configure:30288: checking for bunzip2
configure:30304: found /usr/bin/bunzip2
configure:30316: result: bunzip2
configure:30325: result: <<< Using bzip2/bunzip2 for writing/reading compressed .bz2 files >>>
configure:30351: checking for xz
configure:30379: result: none
configure:30549: checking TECIO.h usability
configure:30549: g++ -c -I../contrib/tecplot/binary/include conftest.cpp >&5
configure:30549: $? = 0
configure:30549: result: yes
configure:30549: checking TECIO.h presence
configure:30549: g++ -E -I../contrib/tecplot/binary/include conftest.cpp
configure:30549: $? = 0
configure:30549: result: yes
configure:30549: checking for TECIO.h
configure:30549: result: yes
configure:30590: g++ -o conftest -I../contrib/tecplot/binary/include conftest.cpp ../contrib/tecplot/binary/lib/x86_64-apple-darwin12.2.1/tecio.a >&5
configure:30590: $? = 0
configure:30598: result: <<< Configuring library with Tecplot API support (v11.2) >>>
configure:30697: result: <<< Configuring library with Metis support >>>
configure:30793: checking for doxygen
configure:30826: result: no
configure:30913: result: <<< Configuring library with Tetgen support >>>
configure:30965: result: <<< Configuring library with Triangle support >>>
configure:31017: result: <<< Configuring library with GMV support >>>
configure:31129: checking /vtkConfigure.h usability
configure:31129: g++ -c conftest.cpp >&5
conftest.cpp:134:27: error: /vtkConfigure.h: No such file or directory
configure:31129: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::tr1::unordered_map
| #define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::tr1::unordered_set
| #define INCLUDE_UNORDERED_SET <tr1/unordered_set>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLFCN_H 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define HAVE_OPENMP 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_XDR 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_BOOST /**/
| #define HAVE_LASPACK 1
| #define HAVE_SFCURVES 1
| #define HAVE_ZLIB_H 1
| #define HAVE_GZSTREAM 1
| #define HAVE_BZIP 1
| #define HAVE_TECPLOT_API 1
| #define HAVE_TECPLOT_API_112 1
| #define HAVE_METIS 1
| #define HAVE_TETGEN 1
| #define HAVE_TRIANGLE 1
| #define HAVE_GMV 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include </vtkConfigure.h>
configure:31129: result: no
configure:31129: checking /vtkConfigure.h presence
configure:31129: g++ -E conftest.cpp
conftest.cpp:101:27: error: /vtkConfigure.h: No such file or directory
configure:31129: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::tr1::unordered_map
| #define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::tr1::unordered_set
| #define INCLUDE_UNORDERED_SET <tr1/unordered_set>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLFCN_H 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define HAVE_OPENMP 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_XDR 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_BOOST /**/
| #define HAVE_LASPACK 1
| #define HAVE_SFCURVES 1
| #define HAVE_ZLIB_H 1
| #define HAVE_GZSTREAM 1
| #define HAVE_BZIP 1
| #define HAVE_TECPLOT_API 1
| #define HAVE_TECPLOT_API_112 1
| #define HAVE_METIS 1
| #define HAVE_TETGEN 1
| #define HAVE_TRIANGLE 1
| #define HAVE_GMV 1
| /* end confdefs.h. */
| #include </vtkConfigure.h>
configure:31129: result: no
configure:31129: checking for /vtkConfigure.h
configure:31129: result: no
configure:31141: result: VTK header files not found!
configure:31403: checking /usr/include/Eigen/Eigen usability
configure:31403: g++ -c conftest.cpp >&5
conftest.cpp:134:36: error: /usr/include/Eigen/Eigen: No such file or directory
configure:31403: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::tr1::unordered_map
| #define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::tr1::unordered_set
| #define INCLUDE_UNORDERED_SET <tr1/unordered_set>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLFCN_H 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define HAVE_OPENMP 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_XDR 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_BOOST /**/
| #define HAVE_LASPACK 1
| #define HAVE_SFCURVES 1
| #define HAVE_ZLIB_H 1
| #define HAVE_GZSTREAM 1
| #define HAVE_BZIP 1
| #define HAVE_TECPLOT_API 1
| #define HAVE_TECPLOT_API_112 1
| #define HAVE_METIS 1
| #define HAVE_TETGEN 1
| #define HAVE_TRIANGLE 1
| #define HAVE_GMV 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include </usr/include/Eigen/Eigen>
configure:31403: result: no
configure:31403: checking /usr/include/Eigen/Eigen presence
configure:31403: g++ -E conftest.cpp
conftest.cpp:101:36: error: /usr/include/Eigen/Eigen: No such file or directory
configure:31403: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::tr1::unordered_map
| #define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::tr1::unordered_set
| #define INCLUDE_UNORDERED_SET <tr1/unordered_set>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLFCN_H 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define HAVE_OPENMP 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_XDR 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_BOOST /**/
| #define HAVE_LASPACK 1
| #define HAVE_SFCURVES 1
| #define HAVE_ZLIB_H 1
| #define HAVE_GZSTREAM 1
| #define HAVE_BZIP 1
| #define HAVE_TECPLOT_API 1
| #define HAVE_TECPLOT_API_112 1
| #define HAVE_METIS 1
| #define HAVE_TETGEN 1
| #define HAVE_TRIANGLE 1
| #define HAVE_GMV 1
| /* end confdefs.h. */
| #include </usr/include/Eigen/Eigen>
configure:31403: result: no
configure:31403: checking for /usr/include/Eigen/Eigen
configure:31403: result: no
configure:31415: result: Eigen header files not found!
configure:31535: checking /usr/include/glpk.h usability
configure:31535: g++ -c conftest.cpp >&5
conftest.cpp:134:31: error: /usr/include/glpk.h: No such file or directory
configure:31535: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::tr1::unordered_map
| #define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::tr1::unordered_set
| #define INCLUDE_UNORDERED_SET <tr1/unordered_set>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLFCN_H 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define HAVE_OPENMP 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_XDR 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_BOOST /**/
| #define HAVE_LASPACK 1
| #define HAVE_SFCURVES 1
| #define HAVE_ZLIB_H 1
| #define HAVE_GZSTREAM 1
| #define HAVE_BZIP 1
| #define HAVE_TECPLOT_API 1
| #define HAVE_TECPLOT_API_112 1
| #define HAVE_METIS 1
| #define HAVE_TETGEN 1
| #define HAVE_TRIANGLE 1
| #define HAVE_GMV 1
| /* end confdefs.h. */
| #include <stdio.h>
| #ifdef HAVE_SYS_TYPES_H
| # include <sys/types.h>
| #endif
| #ifdef HAVE_SYS_STAT_H
| # include <sys/stat.h>
| #endif
| #ifdef STDC_HEADERS
| # include <stdlib.h>
| # include <stddef.h>
| #else
| # ifdef HAVE_STDLIB_H
| # include <stdlib.h>
| # endif
| #endif
| #ifdef HAVE_STRING_H
| # if !defined STDC_HEADERS && defined HAVE_MEMORY_H
| # include <memory.h>
| # endif
| # include <string.h>
| #endif
| #ifdef HAVE_STRINGS_H
| # include <strings.h>
| #endif
| #ifdef HAVE_INTTYPES_H
| # include <inttypes.h>
| #endif
| #ifdef HAVE_STDINT_H
| # include <stdint.h>
| #endif
| #ifdef HAVE_UNISTD_H
| # include <unistd.h>
| #endif
| #include </usr/include/glpk.h>
configure:31535: result: no
configure:31535: checking /usr/include/glpk.h presence
configure:31535: g++ -E conftest.cpp
conftest.cpp:101:31: error: /usr/include/glpk.h: No such file or directory
configure:31535: $? = 1
configure: failed program was:
| /* confdefs.h */
| #define PACKAGE_NAME "libmesh"
| #define PACKAGE_TARNAME "libmesh"
| #define PACKAGE_VERSION "0.9.1pre"
| #define PACKAGE_STRING "libmesh 0.9.1pre"
| #define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
| #define PACKAGE_URL "http://libmesh.sourceforge.net"
| #define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
| #define PACKAGE "libmesh"
| #define VERSION "0.9.1pre"
| #define STDC_HEADERS 1
| #define HAVE_SYS_TYPES_H 1
| #define HAVE_SYS_STAT_H 1
| #define HAVE_STDLIB_H 1
| #define HAVE_STRING_H 1
| #define HAVE_MEMORY_H 1
| #define HAVE_STRINGS_H 1
| #define HAVE_INTTYPES_H 1
| #define HAVE_STDINT_H 1
| #define HAVE_UNISTD_H 1
| #define HAVE_DLFCN_H 1
| #define LT_OBJDIR ".libs/"
| #define MAJOR_VERSION 0
| #define MINOR_VERSION 9
| #define MICRO_VERSION 1
| #define LIB_VERSION "0.9.1pre"
| #define LIB_RELEASE ""
| #define CXX "g++"
| #define IO_COMPATIBILITY_VERSION "0.7.4"
| #define HAVE_NAMESPACES /**/
| #define DEFAULT_DOUBLE_PRECISION 1
| #define DEFAULT_SCALAR_TYPE double
| #define restrict __restrict
| #define HAVE_GETPWUID 1
| #define ENABLE_EXCEPTIONS 1
| #define SIZEOF_SHORT_INT 2
| #define SIZEOF_INT 4
| #define SIZEOF_UNSIGNED_INT 4
| #define SIZEOF_LONG_INT 8
| #define SIZEOF_FLOAT 4
| #define SIZEOF_DOUBLE 8
| #define SIZEOF_VOID_P 8
| #define SIZEOF_FUNCTION_POINTER 8
| #define HAVE_RTTI /**/
| #define HAVE_GETOPT_H 1
| #define HAVE_CSIGNAL 1
| #define HAVE_SYS_RESOURCE_H 1
| #define HAVE_LOCALE /**/
| #define HAVE_SSTREAM /**/
| #define HAVE_STRINGSTREAM /**/
| #define HAVE_FENV_H 1
| #define HAVE_XMMINTRIN_H 1
| #define HAVE_TR1_UNORDERED_MULTIMAP 1
| #define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
| #define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_MAP 1
| #define BEST_UNORDERED_MAP std::tr1::unordered_map
| #define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_TR1_UNORDERED_SET 1
| #define BEST_UNORDERED_SET std::tr1::unordered_set
| #define INCLUDE_UNORDERED_SET <tr1/unordered_set>
| #define DEFINE_HASH_STRING /**/
| #define DEFINE_HASH_POINTERS /**/
| #define HAVE_DLFCN_H 1
| #define HAVE_GCC_ABI_DEMANGLE 1
| #define HAVE_GLIBC_BACKTRACE 1
| #define HAVE_OPENMP 1
| #define REQUIRE_SEPARATE_NAMESPACE 1
| #define BOUNDARY_ID_BYTES 2
| #define DOF_ID_BYTES 4
| #define PROCESSOR_ID_BYTES 2
| #define SUBDOMAIN_ID_BYTES 2
| #define ENABLE_AMR 1
| #define ENABLE_VSMOOTHER 1
| #define ENABLE_PERIODIC 1
| #define ENABLE_DIRICHLET 1
| #define ENABLE_GHOSTED 1
| #define ENABLE_HIGHER_ORDER_SHAPES 1
| #define ENABLE_SECOND_DERIVATIVES 1
| #define HAVE_RPC_RPC_H 1
| #define HAVE_XDR 1
| #define USE_REAL_NUMBERS 1
| #define ENABLE_REFERENCE_COUNTING 1
| #define HAVE_BOOST /**/
| #define HAVE_LASPACK 1
| #define HAVE_SFCURVES 1
| #define HAVE_ZLIB_H 1
| #define HAVE_GZSTREAM 1
| #define HAVE_BZIP 1
| #define HAVE_TECPLOT_API 1
| #define HAVE_TECPLOT_API_112 1
| #define HAVE_METIS 1
| #define HAVE_TETGEN 1
| #define HAVE_TRIANGLE 1
| #define HAVE_GMV 1
| /* end confdefs.h. */
| #include </usr/include/glpk.h>
configure:31535: result: no
configure:31535: checking for /usr/include/glpk.h
configure:31535: result: no
configure:31547: result: GLPK header files not found!
configure:32007: result: <<< Configuring library with NetCDF version 4 support >>>
configure:32086: result: defining -DNOT_NETCDF4 for our Exodus build
configure:32108: result: <<< Configuring library with Exodus version v5.22 support >>>
configure:32269: result: <<< Configuring library with libHilbert support >>>
configure:32348: result: >>> Disabling fparser optimization on darwin12.2.1 <<<
configure:32358: checking for a sed that does not truncate output
configure:32422: result: /usr/bin/sed
configure:32431: checking for bison
configure:32447: found /usr/bin/bison
configure:32458: result: bison -y
configure:32487: result: <<< Configuring library with fparser support (release version) >>>
configure:32601: checking for cppunit-config
configure:32632: result: no
configure:32642: checking for Cppunit - version >= 1.10.0
configure:32646: result: no
configure:32746: result: <<< Configuring library with nanoflann KDtree support >>>
configure:32773: result: ----------------------------------------------
configure:32775: result: --- Done configuring for optional packages ---
configure:32777: result: ----------------------------------------------
configure:32788: result: removing duplicate include paths...
configure:32793: result: removing duplicate libraries...
configure:32821: checking for git
configure:32839: found /usr/bin/git
configure:32851: result: /usr/bin/git
configure:33055: checking that generated files are newer than configure
configure:33061: result: done
configure:33280: creating ./config.status
## ---------------------- ##
## Running config.status. ##
## ---------------------- ##
This file was extended by libmesh config.status 0.9.1pre, which was
generated by GNU Autoconf 2.69. Invocation command line was
CONFIG_FILES =
CONFIG_HEADERS =
CONFIG_LINKS =
CONFIG_COMMANDS =
$ ./config.status
on elfboy
config.status:1682: creating Makefile
config.status:1682: creating include/Makefile
config.status:1682: creating include/libmesh/Makefile
config.status:1682: creating contrib/Makefile
config.status:1682: creating contrib/utils/Makefile
config.status:1682: creating contrib/utils/Make.common
config.status:1682: creating tests/Makefile
config.status:1682: creating doc/Doxyfile
config.status:1682: creating contrib/utils/libmesh.pc
config.status:1682: creating contrib/utils/libmesh-opt.pc
config.status:1682: creating contrib/utils/libmesh-dbg.pc
config.status:1682: creating contrib/utils/libmesh-devel.pc
config.status:1682: creating contrib/utils/libmesh-prof.pc
config.status:1682: creating contrib/utils/libmesh-oprof.pc
config.status:1682: creating contrib/bin/libmesh-config
config.status:1682: creating contrib/bin/xda2mgf
config.status:1682: creating contrib/bin/create_libmesh_release
config.status:1682: creating doc/dot
config.status:1682: creating contrib/boost/include/Makefile
config.status:1682: creating contrib/laspack/Makefile
config.status:1682: creating contrib/sfcurves/Makefile
config.status:1682: creating contrib/gzstream/Makefile
config.status:1682: creating contrib/tecplot/tecio/Makefile
config.status:1682: creating contrib/tecplot/binary/Makefile
config.status:1682: creating contrib/metis/Makefile
config.status:1682: creating contrib/parmetis/Makefile
config.status:1682: creating contrib/tetgen/Makefile
config.status:1682: creating contrib/triangle/Makefile
config.status:1682: creating contrib/gmv/Makefile
config.status:1682: creating contrib/netcdf/v3/Makefile
config.status:1682: creating contrib/exodusii/v5.09/Makefile
config.status:1682: creating contrib/exodusii/v5.22/exodus/cbind/Makefile
config.status:1682: creating contrib/nemesis/v3.09/Makefile
config.status:1682: creating contrib/nemesis/v5.22/nemesis/Makefile
config.status:1682: creating contrib/libHilbert/Makefile
config.status:1682: creating contrib/fparser/Makefile
config.status:1682: creating contrib/fparser/extrasrc/Makefile
config.status:1682: creating contrib/nanoflann/Makefile
config.status:1682: creating examples/introduction/introduction_ex1/Makefile
config.status:1682: creating examples/introduction/introduction_ex2/Makefile
config.status:1682: creating examples/introduction/introduction_ex3/Makefile
config.status:1682: creating examples/introduction/introduction_ex4/Makefile
config.status:1682: creating examples/introduction/introduction_ex5/Makefile
config.status:1682: creating examples/adaptivity/adaptivity_ex1/Makefile
config.status:1682: creating examples/adaptivity/adaptivity_ex2/Makefile
config.status:1682: creating examples/adaptivity/adaptivity_ex3/Makefile
config.status:1682: creating examples/adaptivity/adaptivity_ex4/Makefile
config.status:1682: creating examples/adaptivity/adaptivity_ex5/Makefile
config.status:1682: creating examples/adjoints/adjoints_ex1/Makefile
config.status:1682: creating examples/adjoints/adjoints_ex2/Makefile
config.status:1682: creating examples/adjoints/adjoints_ex3/Makefile
config.status:1682: creating examples/adjoints/adjoints_ex4/Makefile
config.status:1682: creating examples/adjoints/adjoints_ex5/Makefile
config.status:1682: creating examples/eigenproblems/eigenproblems_ex1/Makefile
config.status:1682: creating examples/eigenproblems/eigenproblems_ex2/Makefile
config.status:1682: creating examples/eigenproblems/eigenproblems_ex3/Makefile
config.status:1682: creating examples/fem_system/fem_system_ex1/Makefile
config.status:1682: creating examples/fem_system/fem_system_ex2/Makefile
config.status:1682: creating examples/solution_transfer/solution_transfer_ex1/Makefile
config.status:1682: creating examples/miscellaneous/miscellaneous_ex1/Makefile
config.status:1682: creating examples/miscellaneous/miscellaneous_ex2/Makefile
config.status:1682: creating examples/miscellaneous/miscellaneous_ex3/Makefile
config.status:1682: creating examples/miscellaneous/miscellaneous_ex4/Makefile
config.status:1682: creating examples/miscellaneous/miscellaneous_ex5/Makefile
config.status:1682: creating examples/miscellaneous/miscellaneous_ex6/Makefile
config.status:1682: creating examples/miscellaneous/miscellaneous_ex7/Makefile
config.status:1682: creating examples/miscellaneous/miscellaneous_ex8/Makefile
config.status:1682: creating examples/subdomains/subdomains_ex1/Makefile
config.status:1682: creating examples/subdomains/subdomains_ex2/Makefile
config.status:1682: creating examples/systems_of_equations/systems_of_equations_ex1/Makefile
config.status:1682: creating examples/systems_of_equations/systems_of_equations_ex2/Makefile
config.status:1682: creating examples/systems_of_equations/systems_of_equations_ex3/Makefile
config.status:1682: creating examples/systems_of_equations/systems_of_equations_ex4/Makefile
config.status:1682: creating examples/systems_of_equations/systems_of_equations_ex5/Makefile
config.status:1682: creating examples/systems_of_equations/systems_of_equations_ex6/Makefile
config.status:1682: creating examples/reduced_basis/reduced_basis_ex1/Makefile
config.status:1682: creating examples/reduced_basis/reduced_basis_ex2/Makefile
config.status:1682: creating examples/reduced_basis/reduced_basis_ex3/Makefile
config.status:1682: creating examples/reduced_basis/reduced_basis_ex4/Makefile
config.status:1682: creating examples/reduced_basis/reduced_basis_ex5/Makefile
config.status:1682: creating examples/reduced_basis/reduced_basis_ex6/Makefile
config.status:1682: creating examples/reduced_basis/reduced_basis_ex7/Makefile
config.status:1682: creating examples/transient/transient_ex1/Makefile
config.status:1682: creating examples/transient/transient_ex2/Makefile
config.status:1682: creating examples/vector_fe/vector_fe_ex1/Makefile
config.status:1682: creating examples/vector_fe/vector_fe_ex2/Makefile
config.status:1682: creating examples/vector_fe/vector_fe_ex3/Makefile
config.status:1682: creating examples/Makefile
config.status:1682: creating include/libmesh_config.h.tmp
config.status:1896: executing include/libmesh_config.h commands
config.status:1938: creating include/libmesh_config.h - prefix LIBMESH for include/libmesh_config.h.tmp defines
config.status:1896: executing depfiles commands
config.status:1896: executing libtool commands
configure:36497: === configuring in contrib/netcdf/v4 (/Users/benkirk/codes/libmesh/xcode/contrib/netcdf/v4)
configure:36560: running /bin/sh ../../../../contrib/netcdf/v4/configure --disable-option-checking '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx' '--disable-netcdf-4' '--disable-testsets' 'CXX=g++' 'CC=gcc' 'F77=' 'FC=' --cache-file=/dev/null --srcdir=../../../../contrib/netcdf/v4
configure:36751: result: ---------------------------------------------
configure:36753: result: --------- Done Configuring libMesh ----------
configure:36755: result: ---------------------------------------------
## ---------------- ##
## Cache variables. ##
## ---------------- ##
ac_cv_build=x86_64-apple-darwin12.2.1
ac_cv_c_compiler_gnu=yes
ac_cv_c_restrict=__restrict
ac_cv_cxx_compiler_gnu=yes
ac_cv_cxx_gcc_abi_demangle=yes
ac_cv_cxx_glibc_backtrace=yes
ac_cv_cxx_have_locale=yes
ac_cv_cxx_have_sstream=yes
ac_cv_cxx_namespaces=yes
ac_cv_cxx_rtti=yes
ac_cv_cxx_thread=no
ac_cv_cxx_tr1_unordered_map=yes
ac_cv_cxx_tr1_unordered_multimap=yes
ac_cv_cxx_tr1_unordered_set=yes
ac_cv_cxx_unordered_map=no
ac_cv_cxx_unordered_multimap=no
ac_cv_cxx_unordered_set=no
ac_cv_env_CCC_set=
ac_cv_env_CCC_value=
ac_cv_env_CC_set=
ac_cv_env_CC_value=
ac_cv_env_CFLAGS_set=
ac_cv_env_CFLAGS_value=
ac_cv_env_CPPFLAGS_set=
ac_cv_env_CPPFLAGS_value=
ac_cv_env_CPP_set=
ac_cv_env_CPP_value=
ac_cv_env_CXXCPP_set=
ac_cv_env_CXXCPP_value=
ac_cv_env_CXXFLAGS_set=
ac_cv_env_CXXFLAGS_value=
ac_cv_env_CXX_set=
ac_cv_env_CXX_value=
ac_cv_env_F77_set=
ac_cv_env_F77_value=
ac_cv_env_FCFLAGS_set=
ac_cv_env_FCFLAGS_value=
ac_cv_env_FC_set=
ac_cv_env_FC_value=
ac_cv_env_FFLAGS_set=
ac_cv_env_FFLAGS_value=
ac_cv_env_HDF5_DIR_set=
ac_cv_env_HDF5_DIR_value=
ac_cv_env_LDFLAGS_set=
ac_cv_env_LDFLAGS_value=
ac_cv_env_LIBS_set=
ac_cv_env_LIBS_value=
ac_cv_env_METHODS_set=
ac_cv_env_METHODS_value=
ac_cv_env_PETSC_ARCH_set=set
ac_cv_env_PETSC_ARCH_value=macosx
ac_cv_env_PETSC_DIR_set=
ac_cv_env_PETSC_DIR_value=
ac_cv_env_SLEPC_DIR_set=
ac_cv_env_SLEPC_DIR_value=
ac_cv_env_TRILINOS_DIR_set=
ac_cv_env_TRILINOS_DIR_value=
ac_cv_env_VTK_DIR_set=
ac_cv_env_VTK_DIR_value=
ac_cv_env_VTK_INCLUDE_set=
ac_cv_env_VTK_INCLUDE_value=
ac_cv_env_YACC_set=
ac_cv_env_YACC_value=
ac_cv_env_YFLAGS_set=
ac_cv_env_YFLAGS_value=
ac_cv_env_build_alias_set=
ac_cv_env_build_alias_value=
ac_cv_env_host_alias_set=
ac_cv_env_host_alias_value=
ac_cv_env_libmesh_CFLAGS_set=
ac_cv_env_libmesh_CFLAGS_value=
ac_cv_env_libmesh_CPPFLAGS_set=
ac_cv_env_libmesh_CPPFLAGS_value=
ac_cv_env_libmesh_CXXFLAGS_set=set
ac_cv_env_libmesh_CXXFLAGS_value=-DOMPI_SKIP_MPICXX
ac_cv_env_target_alias_set=
ac_cv_env_target_alias_value=
ac_cv_f77_compiler_gnu=no
ac_cv_fc_compiler_gnu=no
ac_cv_file_src_base_libmesh_C=no
ac_cv_func_xdrstdio_create=yes
ac_cv_have_fedisableexcept=no
ac_cv_have_feenableexcept=no
ac_cv_header_TECIO_h=yes
ac_cv_header__include_petscversion_h=no
ac_cv_header__usr_include_Eigen_Eigen=no
ac_cv_header__usr_include_glpk_h=no
ac_cv_header__usr_include_tbb_task_scheduler_init_h=no
ac_cv_header__vtkConfigure_h=no
ac_cv_header_csignal=yes
ac_cv_header_dlfcn_h=yes
ac_cv_header_fenv_h=yes
ac_cv_header_getopt_h=yes
ac_cv_header_inttypes_h=yes
ac_cv_header_memory_h=yes
ac_cv_header_rpc_rpc_h=yes
ac_cv_header_stdc=yes
ac_cv_header_stdint_h=yes
ac_cv_header_stdlib_h=yes
ac_cv_header_string_h=yes
ac_cv_header_strings_h=yes
ac_cv_header_sys_resource_h=yes
ac_cv_header_sys_stat_h=yes
ac_cv_header_sys_types_h=yes
ac_cv_header_unistd_h=yes
ac_cv_header_xmmintrin_h=yes
ac_cv_header_zlib_h=yes
ac_cv_host=x86_64-apple-darwin12.2.1
ac_cv_lib_z_gzopen=yes
ac_cv_objext=o
ac_cv_path_CPPUNIT_CONFIG=no
ac_cv_path_EGREP='/usr/bin/grep -E'
ac_cv_path_FGREP='/usr/bin/grep -F'
ac_cv_path_GREP=/usr/bin/grep
ac_cv_path_PERL=/usr/bin/perl
ac_cv_path_PKG_CONFIG=no
ac_cv_path_SED=/usr/bin/sed
ac_cv_path_gitquery=/usr/bin/git
ac_cv_path_install='/usr/bin/install -c'
ac_cv_prog_AWK=awk
ac_cv_prog_BUNZIP2=bunzip2
ac_cv_prog_BZIP2=bzip2
ac_cv_prog_CPP='gcc -E'
ac_cv_prog_CXXCPP='g++ -E'
ac_cv_prog_XZ=none
ac_cv_prog_YACC='bison -y'
ac_cv_prog_ac_ct_AR=ar
ac_cv_prog_ac_ct_CC=gcc
ac_cv_prog_ac_ct_CXX=g++
ac_cv_prog_ac_ct_DSYMUTIL=dsymutil
ac_cv_prog_ac_ct_LIPO=lipo
ac_cv_prog_ac_ct_NMEDIT=nmedit
ac_cv_prog_ac_ct_OTOOL=otool
ac_cv_prog_ac_ct_RANLIB=ranlib
ac_cv_prog_ac_ct_STRIP=strip
ac_cv_prog_cc_c89=
ac_cv_prog_cc_g=yes
ac_cv_prog_cxx_g=yes
ac_cv_prog_f77_g=no
ac_cv_prog_fc_g=no
ac_cv_prog_make_make_set=yes
ac_cv_sizeof_double=8
ac_cv_sizeof_float=4
ac_cv_sizeof_function_pointer=8
ac_cv_sizeof_int=4
ac_cv_sizeof_long_int=8
ac_cv_sizeof_short_int=2
ac_cv_sizeof_unsigned_int=4
ac_cv_sizeof_void_p=8
ac_cv_target=x86_64-apple-darwin12.2.1
ac_cv_tbb_cxx_thread=no
am_cv_CC_dependencies_compiler_type=gcc3
am_cv_CXX_dependencies_compiler_type=gcc3
am_cv_make_support_nested_variables=yes
am_cv_prog_tar_ustar=gnutar
ax_cv_cxx_openmp=-fopenmp
lt_cv_apple_cc_single_mod=yes
lt_cv_ar_at_file=no
lt_cv_deplibs_check_method=pass_all
lt_cv_file_magic_cmd='$MAGIC_CMD'
lt_cv_file_magic_test_file=
lt_cv_ld_exported_symbols_list=yes
lt_cv_ld_force_load=yes
lt_cv_ld_reload_flag=-r
lt_cv_nm_interface='BSD nm'
lt_cv_objdir=.libs
lt_cv_path_LD=/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld
lt_cv_path_LDCXX=/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld
lt_cv_path_NM=/usr/bin/nm
lt_cv_path_mainfest_tool=no
lt_cv_prog_compiler_c_o=yes
lt_cv_prog_compiler_c_o_CXX=yes
lt_cv_prog_compiler_pic='-fno-common -DPIC'
lt_cv_prog_compiler_pic_CXX='-fno-common -DPIC'
lt_cv_prog_compiler_pic_works=yes
lt_cv_prog_compiler_pic_works_CXX=yes
lt_cv_prog_compiler_rtti_exceptions=no
lt_cv_prog_compiler_static_works=no
lt_cv_prog_compiler_static_works_CXX=no
lt_cv_prog_gnu_ld=no
lt_cv_prog_gnu_ldcxx=no
lt_cv_sharedlib_from_linklib_cmd='printf %s\n'
lt_cv_sys_global_symbol_pipe='sed -n -e '\''s/^.*[ ]\([BCDEGRST][BCDEGRST]*\)[ ][ ]*_\([_A-Za-z][_A-Za-z0-9]*\)$/\1 _\2 \2/p'\'' | sed '\''/ __gnu_lto/d'\'''
lt_cv_sys_global_symbol_to_c_name_address='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \([^ ]*\)$/ {"\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_c_name_address_lib_prefix='sed -n -e '\''s/^: \([^ ]*\)[ ]*$/ {\"\1\", (void *) 0},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \(lib[^ ]*\)$/ {"\2", (void *) \&\2},/p'\'' -e '\''s/^[BCDEGRST]* \([^ ]*\) \([^ ]*\)$/ {"lib\2", (void *) \&\2},/p'\'''
lt_cv_sys_global_symbol_to_cdecl='sed -n -e '\''s/^T .* \(.*\)$/extern int \1();/p'\'' -e '\''s/^[BCDEGRST]* .* \(.*\)$/extern char \1;/p'\'''
lt_cv_sys_max_cmd_len=196608
lt_cv_to_host_file_cmd=func_convert_file_noop
lt_cv_to_tool_file_cmd=func_convert_file_noop
## ----------------- ##
## Output variables. ##
## ----------------- ##
ACLOCAL='${SHELL} /Users/benkirk/codes/libmesh/build-aux/missing --run aclocal-1.12'
AMDEPBACKSLASH='\'
AMDEP_FALSE='#'
AMDEP_TRUE=''
AMTAR='$${TAR-tar}'
AM_BACKSLASH='\'
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AM_DEFAULT_VERBOSITY='0'
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AR='ar'
AUTOCONF='${SHELL} /Users/benkirk/codes/libmesh/build-aux/missing --run autoconf'
AUTOHEADER='${SHELL} /Users/benkirk/codes/libmesh/build-aux/missing --run autoheader'
AUTOMAKE='${SHELL} /Users/benkirk/codes/libmesh/build-aux/missing --run automake-1.12'
AWK='awk'
AZTECOO_INCLUDES=''
AZTECOO_LIBS=''
AZTECOO_MAKEFILE_EXPORT=''
BOOST_CPPFLAGS='-I/opt/local/include/'
BOOST_LDFLAGS='-L/opt/local/lib'
BUILD_ARCH='x86_64-apple-darwin12.2.1'
BUILD_DEVSTATUS='Development Build'
BUILD_HOST='elfboy'
BUILD_METIS_FALSE='#'
BUILD_METIS_TRUE=''
BUILD_USER='benkirk'
BUILD_VERSION=''
BUNZIP2='bunzip2'
BZIP2='bzip2'
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CCDEPMODE='depmode=gcc3'
CFLAGS=''
CFLAGS_DBG='-g -Wimplicit -fopenmp'
CFLAGS_DEVEL='-O2 -g -Wimplicit -funroll-loops -fstrict-aliasing -fopenmp'
CFLAGS_DVL=''
CFLAGS_OPROF='-O2 -funroll-loops -fstrict-aliasing -g -fno-omit-frame-pointer -fopenmp'
CFLAGS_OPT='-O2 -funroll-loops -fstrict-aliasing -fopenmp'
CFLAGS_PROF='-O2 -funroll-loops -fstrict-aliasing -pg -fopenmp'
CODE_COVERAGE_ENABLED_FALSE=''
CODE_COVERAGE_ENABLED_TRUE='#'
CPP='gcc -E'
CPPFLAGS=''
CPPFLAGS_DBG='-DDEBUG '
CPPFLAGS_DEVEL=' '
CPPFLAGS_OPROF='-DNDEBUG '
CPPFLAGS_OPT='-DNDEBUG '
CPPFLAGS_PROF='-DNDEBUG '
CPPUNIT_CFLAGS=''
CPPUNIT_CONFIG='no'
CPPUNIT_LIBS=''
CXX='g++'
CXXCPP='g++ -E'
CXXDEPMODE='depmode=gcc3'
CXXFLAGS=''
CXXFLAGS_DBG=' -O0 -felide-constructors -g -ansi -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Woverloaded-virtual -DOMPI_SKIP_MPICXX -fopenmp'
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CXXFLAGS_DVL=''
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CXXFLAGS_PROF=' -O2 -felide-constructors -funroll-loops -fstrict-aliasing -Wdisabled-optimization -DOMPI_SKIP_MPICXX -pg -fopenmp'
CXXSHAREDFLAG=''
CYGPATH_W='echo'
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FC=''
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INSTALL_DATA='${INSTALL} -m 644'
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INSTALL_SCRIPT='${INSTALL}'
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LASPACK_INCLUDE='-I$(top_srcdir)/contrib/laspack'
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LD='/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld'
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LIBMESH_ENABLE_EXODUS_TRUE=''
LIBMESH_ENABLE_EXODUS_V509_FALSE=''
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LIBMESH_ENABLE_GLIBCXX_DEBUGGING_TRUE='#'
LIBMESH_ENABLE_GLPK_FALSE=''
LIBMESH_ENABLE_GLPK_TRUE='#'
LIBMESH_ENABLE_GMV_FALSE='#'
LIBMESH_ENABLE_GMV_TRUE=''
LIBMESH_ENABLE_GZSTREAMS_FALSE='#'
LIBMESH_ENABLE_GZSTREAMS_TRUE=''
LIBMESH_ENABLE_HDF5_FALSE=''
LIBMESH_ENABLE_HDF5_TRUE='#'
LIBMESH_ENABLE_INFINITE_ELEMENTS_FALSE='#'
LIBMESH_ENABLE_INFINITE_ELEMENTS_TRUE=''
LIBMESH_ENABLE_LASPACK_FALSE='#'
LIBMESH_ENABLE_LASPACK_TRUE=''
LIBMESH_ENABLE_LIBHILBERT_FALSE='#'
LIBMESH_ENABLE_LIBHILBERT_TRUE=''
LIBMESH_ENABLE_METIS_FALSE='#'
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LIBMESH_ENABLE_NANOFLANN_FALSE='#'
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LIBMESH_ENABLE_NEMESIS_TRUE='#'
LIBMESH_ENABLE_NEMESIS_V309_FALSE=''
LIBMESH_ENABLE_NEMESIS_V309_TRUE='#'
LIBMESH_ENABLE_NEMESIS_V522_FALSE=''
LIBMESH_ENABLE_NEMESIS_V522_TRUE='#'
LIBMESH_ENABLE_NETCDF_FALSE='#'
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LIBMESH_ENABLE_NETCDF_V3_FALSE=''
LIBMESH_ENABLE_NETCDF_V3_TRUE='#'
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LIBMESH_ENABLE_NETCDF_V4_TRUE=''
LIBMESH_ENABLE_PARMETIS_FALSE=''
LIBMESH_ENABLE_PARMETIS_TRUE='#'
LIBMESH_ENABLE_PETSC_FALSE=''
LIBMESH_ENABLE_PETSC_TRUE='#'
LIBMESH_ENABLE_SFC_FALSE='#'
LIBMESH_ENABLE_SFC_TRUE=''
LIBMESH_ENABLE_SLEPC_FALSE=''
LIBMESH_ENABLE_SLEPC_TRUE='#'
LIBMESH_ENABLE_TECIO_FALSE=''
LIBMESH_ENABLE_TECIO_TRUE='#'
LIBMESH_ENABLE_TECPLOT_FALSE='#'
LIBMESH_ENABLE_TECPLOT_TRUE=''
LIBMESH_ENABLE_TETGEN_FALSE='#'
LIBMESH_ENABLE_TETGEN_TRUE=''
LIBMESH_ENABLE_TRIANGLE_FALSE='#'
LIBMESH_ENABLE_TRIANGLE_TRUE=''
LIBMESH_ENABLE_VTK_FALSE=''
LIBMESH_ENABLE_VTK_TRUE='#'
LIBMESH_INSTALL_INTERNAL_BOOST_FALSE=''
LIBMESH_INSTALL_INTERNAL_BOOST_TRUE='#'
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LIBMESH_OPROF_MODE_TRUE='#'
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LIBMESH_PROF_MODE_FALSE=''
LIBMESH_PROF_MODE_TRUE='#'
LIBMESH_VPATH_BUILD_FALSE='#'
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LIBOBJS=''
LIBS=''
LIBTOOL='$(SHELL) $(top_builddir)/libtool'
LIPO='lipo'
LN_S='ln -s'
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MAINT=''
MAINTAINER_MODE_FALSE='#'
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MAKEINFO='${SHELL} /Users/benkirk/codes/libmesh/build-aux/missing --run makeinfo'
MANIFEST_TOOL=':'
METHOD='opt'
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METIS_INCLUDE='-I$(top_srcdir)/contrib/metis/include'
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MKDIR_P='../build-aux/install-sh -c -d'
ML_INCLUDES=''
ML_LIBS=''
ML_MAKEFILE_EXPORT=''
MPCXX=''
MPI='/usr'
MPI_IMPL=''
MPI_INCLUDES_PATH='/usr/include'
MPI_INCLUDES_PATHS=''
MPI_LIBS=''
MPI_LIBS_PATH='/usr/lib'
MPI_LIBS_PATHS=''
NANOFLANN_INCLUDE='-I$(top_srcdir)/contrib/nanoflann/include'
NEMESIS_INCLUDE=''
NETCDF_INCLUDE='-I$(top_srcdir)/contrib/netcdf/v4/include'
NM='/usr/bin/nm'
NMEDIT='nmedit'
NODEPRECATEDFLAG='-Wno-deprecated'
NOX_INCLUDES=''
NOX_LIBS=''
NOX_MAKEFILE_EXPORT=''
OBJDUMP='false'
OBJEXT='o'
OPENMP_CFLAGS='-fopenmp'
OPENMP_CXXFLAGS='-fopenmp'
OPENMP_FFLAGS='-fopenmp'
OPROFILE_FLAGS='-g -fno-omit-frame-pointer'
OTOOL64=':'
OTOOL='otool'
PACKAGE='libmesh'
PACKAGE_BUGREPORT='libmesh-users@lists.sourceforge.net'
PACKAGE_NAME='libmesh'
PACKAGE_STRING='libmesh 0.9.1pre'
PACKAGE_TARNAME='libmesh'
PACKAGE_URL='http://libmesh.sourceforge.net'
PACKAGE_VERSION='0.9.1pre'
PARMETIS_INCLUDE=''
PARMETIS_LIB=''
PATH_SEPARATOR=':'
PERL='/usr/bin/perl'
PETSCARCH=''
PETSCINCLUDEDIRS=''
PETSCLINKLIBS=''
PETSC_ARCH='macosx'
PETSC_CC_INCLUDES=''
PETSC_DIR=''
PETSC_FC_INCLUDES=''
PKG_CONFIG='no'
PROFILING_FLAGS='-pg'
PWD='/Users/benkirk/codes/libmesh/xcode'
RANLIB='ranlib'
RPATHFLAG='-Wl,-rpath,'
SED='/usr/bin/sed'
SET_MAKE=''
SFC_INCLUDE='-I$(top_srcdir)/contrib/sfcurves'
SFC_LIB='$(EXTERNAL_LIBDIR)/libsfcurves$(libext)'
SHELL='/bin/sh'
SLEPC_DIR=''
SLEPC_INCLUDE=''
SLEPC_LIBS=''
STRIP='strip'
TBB_INCLUDE=''
TBB_LIBRARY=''
TECIO_CPPFLAGS=''
TECIO_INCLUDE=''
TETGEN_INCLUDE='-I$(top_srcdir)/contrib/tetgen'
TETGEN_LIBRARY='$(EXTERNAL_LIBDIR)/libtetgen$(libext)'
TPETRA_INCLUDES=''
TPETRA_LIBS=''
TPETRA_MAKEFILE_EXPORT=''
TRIANGLE_INCLUDE='-I$(top_srcdir)/contrib/triangle'
TRIANGLE_LIBRARY='$(EXTERNAL_LIBDIR)/libtriangle$(libext)'
TRILINOS_DIR=''
TRILINOS_INCLUDES=''
TRILINOS_LIBS=''
TRILINOS_MAKEFILE_EXPORT=''
VERSION='0.9.1pre'
VTK_DIR='/usr'
VTK_INCLUDE=''
VTK_LIBRARY=''
XZ='none'
YACC='bison -y'
YFLAGS=''
ac_ct_AR='ar'
ac_ct_CC='gcc'
ac_ct_CXX='g++'
ac_ct_DUMPBIN=''
ac_ct_F77=''
ac_ct_FC=''
am__EXEEXT_FALSE=''
am__EXEEXT_TRUE='#'
am__fastdepCC_FALSE='#'
am__fastdepCC_TRUE=''
am__fastdepCXX_FALSE='#'
am__fastdepCXX_TRUE=''
am__include='include'
am__isrc=' -I$(srcdir)'
am__leading_dot='.'
am__nodep='_no'
am__quote=''
am__tar='tar --format=ustar -chf - "$$tardir"'
am__untar='tar -xf -'
bindir='${exec_prefix}/bin'
build='x86_64-apple-darwin12.2.1'
build_alias=''
build_cpu='x86_64'
build_os='darwin12.2.1'
build_vendor='apple'
datadir='${datarootdir}'
datarootdir='${prefix}/share'
docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
dvidir='${docdir}'
enablelegacyincludepaths='no'
exec_prefix='${prefix}'
gitquery='/usr/bin/git'
have_gcov=''
host='x86_64-apple-darwin12.2.1'
host_alias=''
host_cpu='x86_64'
host_os='darwin12.2.1'
host_vendor='apple'
htmldir='${docdir}'
includedir='${prefix}/include'
infodir='${datarootdir}/info'
install_sh='${SHELL} /Users/benkirk/codes/libmesh/build-aux/install-sh'
libdir='${exec_prefix}/lib'
libexecdir='${exec_prefix}/libexec'
libmesh_CFLAGS=' '
libmesh_CPPFLAGS=''
libmesh_CXXFLAGS=' -DOMPI_SKIP_MPICXX'
libmesh_contrib_INCLUDES='-I$(top_srcdir)/contrib/nanoflann/include -I$(top_srcdir)/contrib/fparser -I$(top_srcdir)/contrib/libHilbert/include -I$(top_srcdir)/contrib/exodusii/v5.22/exodus/cbind/include -I$(top_srcdir)/contrib/netcdf/v4/include -I$(top_srcdir)/contrib/gmv -I$(top_srcdir)/contrib/triangle -I$(top_srcdir)/contrib/tetgen -I$(top_srcdir)/contrib/metis/include -I$(top_srcdir)/contrib/tecplot/binary/include -I$(top_srcdir)/contrib/gzstream -I$(top_srcdir)/contrib/sfcurves -I$(top_srcdir)/contrib/laspack '
libmesh_installed_LIBS=' -ltecio_vendor'
libmesh_optional_INCLUDES='-I/opt/local/include'
libmesh_optional_LIBS='-lz'
libmesh_pkgconfig_requires='netcdf >= 4.2 '
localedir='${datarootdir}/locale'
localstatedir='${prefix}/var'
mandir='${datarootdir}/man'
mkdir_p='$(MKDIR_P)'
oldincludedir='/usr/include'
pdfdir='${docdir}'
petscmajor=''
petscmajorminor=''
petscversion=''
prefix='/Users/benkirk/codes/libmesh/xcode/_inst'
program_transform_name='s,x,x,'
psdir='${docdir}'
sbindir='${exec_prefix}/sbin'
sharedstatedir='${prefix}/com'
subdirs=' contrib/netcdf/v4'
sysconfdir='${prefix}/etc'
target='x86_64-apple-darwin12.2.1'
target_alias=''
target_cpu='x86_64'
target_os='darwin12.2.1'
target_vendor='apple'
vtkbuild=''
vtkmajor=''
vtkversion=''
## ----------- ##
## confdefs.h. ##
## ----------- ##
/* confdefs.h */
#define PACKAGE_NAME "libmesh"
#define PACKAGE_TARNAME "libmesh"
#define PACKAGE_VERSION "0.9.1pre"
#define PACKAGE_STRING "libmesh 0.9.1pre"
#define PACKAGE_BUGREPORT "libmesh-users@lists.sourceforge.net"
#define PACKAGE_URL "http://libmesh.sourceforge.net"
#define CONFIGURE_INFO "../configure '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx'"
#define PACKAGE "libmesh"
#define VERSION "0.9.1pre"
#define STDC_HEADERS 1
#define HAVE_SYS_TYPES_H 1
#define HAVE_SYS_STAT_H 1
#define HAVE_STDLIB_H 1
#define HAVE_STRING_H 1
#define HAVE_MEMORY_H 1
#define HAVE_STRINGS_H 1
#define HAVE_INTTYPES_H 1
#define HAVE_STDINT_H 1
#define HAVE_UNISTD_H 1
#define HAVE_DLFCN_H 1
#define LT_OBJDIR ".libs/"
#define MAJOR_VERSION 0
#define MINOR_VERSION 9
#define MICRO_VERSION 1
#define LIB_VERSION "0.9.1pre"
#define LIB_RELEASE ""
#define CXX "g++"
#define IO_COMPATIBILITY_VERSION "0.7.4"
#define HAVE_NAMESPACES /**/
#define DEFAULT_DOUBLE_PRECISION 1
#define DEFAULT_SCALAR_TYPE double
#define restrict __restrict
#define HAVE_GETPWUID 1
#define ENABLE_EXCEPTIONS 1
#define SIZEOF_SHORT_INT 2
#define SIZEOF_INT 4
#define SIZEOF_UNSIGNED_INT 4
#define SIZEOF_LONG_INT 8
#define SIZEOF_FLOAT 4
#define SIZEOF_DOUBLE 8
#define SIZEOF_VOID_P 8
#define SIZEOF_FUNCTION_POINTER 8
#define HAVE_RTTI /**/
#define HAVE_GETOPT_H 1
#define HAVE_CSIGNAL 1
#define HAVE_SYS_RESOURCE_H 1
#define HAVE_LOCALE /**/
#define HAVE_SSTREAM /**/
#define HAVE_STRINGSTREAM /**/
#define HAVE_FENV_H 1
#define HAVE_XMMINTRIN_H 1
#define HAVE_TR1_UNORDERED_MULTIMAP 1
#define BEST_UNORDERED_MULTIMAP std::tr1::unordered_multimap
#define INCLUDE_UNORDERED_MULTIMAP <tr1/unordered_map>
#define DEFINE_HASH_STRING /**/
#define DEFINE_HASH_POINTERS /**/
#define HAVE_TR1_UNORDERED_MAP 1
#define BEST_UNORDERED_MAP std::tr1::unordered_map
#define INCLUDE_UNORDERED_MAP <tr1/unordered_map>
#define DEFINE_HASH_STRING /**/
#define DEFINE_HASH_POINTERS /**/
#define HAVE_TR1_UNORDERED_SET 1
#define BEST_UNORDERED_SET std::tr1::unordered_set
#define INCLUDE_UNORDERED_SET <tr1/unordered_set>
#define DEFINE_HASH_STRING /**/
#define DEFINE_HASH_POINTERS /**/
#define HAVE_DLFCN_H 1
#define HAVE_GCC_ABI_DEMANGLE 1
#define HAVE_GLIBC_BACKTRACE 1
#define HAVE_OPENMP 1
#define REQUIRE_SEPARATE_NAMESPACE 1
#define BOUNDARY_ID_BYTES 2
#define DOF_ID_BYTES 4
#define PROCESSOR_ID_BYTES 2
#define SUBDOMAIN_ID_BYTES 2
#define ENABLE_AMR 1
#define ENABLE_VSMOOTHER 1
#define ENABLE_PERIODIC 1
#define ENABLE_DIRICHLET 1
#define ENABLE_GHOSTED 1
#define ENABLE_HIGHER_ORDER_SHAPES 1
#define ENABLE_SECOND_DERIVATIVES 1
#define HAVE_RPC_RPC_H 1
#define HAVE_XDR 1
#define USE_REAL_NUMBERS 1
#define ENABLE_REFERENCE_COUNTING 1
#define HAVE_BOOST /**/
#define HAVE_LASPACK 1
#define HAVE_SFCURVES 1
#define HAVE_ZLIB_H 1
#define HAVE_GZSTREAM 1
#define HAVE_BZIP 1
#define HAVE_TECPLOT_API 1
#define HAVE_TECPLOT_API_112 1
#define HAVE_METIS 1
#define HAVE_TETGEN 1
#define HAVE_TRIANGLE 1
#define HAVE_GMV 1
#define HAVE_NETCDF 1
#define HAVE_EXODUS_API 1
#define HAVE_LIBHILBERT 1
#define HAVE_FPARSER 1
#define HAVE_FPARSER_DEVEL 0
#define HAVE_NANOFLANN 1
#define BUILD_USER "benkirk"
#define BUILD_ARCH "x86_64-apple-darwin12.2.1"
#define BUILD_HOST "elfboy"
#define BUILD_VERSION ""
#define BUILD_DEVSTATUS "Development Build"
#define BUILD_DATE __DATE__" "__TIME__
configure: exit 0
$ ../configure --prefix=/Users/benkirk/codes/libmesh/xcode/_inst
---------------------------------------------
----------- Configuring libMesh -------------
---------------------------------------------
checking build system type... x86_64-apple-darwin12.2.1
checking host system type... x86_64-apple-darwin12.2.1
checking target system type... x86_64-apple-darwin12.2.1
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... ../build-aux/install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking how to create a ustar tar archive... gnutar
checking whether make supports nested variables... yes
checking whether to enable maintainer-specific portions of Makefiles... yes
checking for src/base/libmesh.C... no
<<< Configuring build directory for VPATH build >>>
checking for style of include used by make... GNU
checking for mpicxx... no
checking for mpiCC... no
checking for mpicc... no
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking dependency style of g++... gcc3
<<< C++ compiler is gcc-4.2 >>>
<<< C++ compiler is built by Apple >>>
checking for mpicc... no
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for mpif90... no
checking for gfortran... no
checking for ifort... no
checking for pgf90... no
checking for xlf95... no
checking whether we are using the GNU Fortran compiler... no
checking whether accepts -g... no
checking for mpif77... no
checking whether we are using the GNU Fortran 77 compiler... no
checking whether accepts -g... no
<< Disabling GLIBCXX debugging on Darwin >>>
No build methods specified, defaulting to "dbg devel opt"
<<< Configuring libMesh with methods "dbg devel opt" >>>
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld
checking if the linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
checking the name lister (/usr/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 196608
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-apple-darwin12.2.1 file names to x86_64-apple-darwin12.2.1 format... func_convert_file_noop
checking how to convert x86_64-apple-darwin12.2.1 file names to toolchain format... func_convert_file_noop
checking for /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld option to reload object files... -r
checking for objdump... no
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... no
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for lipo... lipo
checking for otool... otool
checking for otool64... no
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking for -force_load linker flag... yes
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fno-common -DPIC
checking if gcc PIC flag -fno-common -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin12.2.1 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... no
checking how to run the C++ preprocessor... g++ -E
checking for ld used by g++... /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld
checking if the linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) is GNU ld... no
checking whether the g++ linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries... yes
checking for g++ option to produce PIC... -fno-common -DPIC
checking if g++ PIC flag -fno-common -DPIC works... yes
checking if g++ static flag -static works... no
checking if g++ supports -c -o file.o... yes
checking if g++ supports -c -o file.o... (cached) yes
checking whether the g++ linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin12.2.1 dyld
checking how to hardcode library paths into programs... immediate
checking Major version... 0
checking Minor version... 9
checking Point version... 1
checking whether ln -s works... yes
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for perl... /usr/bin/perl
checking for pkg-config... no
checking whether the compiler implements namespaces... yes
---------------------------------------------
------- Configuring compiler features -------
---------------------------------------------
<<< Default floating point is double precision (double) >>>
checking for C/C++ restrict keyword... __restrict
<<< Configuring library with getpwuid >>>
<<< Configuring library with exception throwing support >>>
checking size of short int... 2
checking size of int... 4
checking size of unsigned int... 4
checking size of long int... 8
checking size of float... 4
checking size of double... 8
checking size of void *... 8
checking size of function_pointer... 8
checking whether the compiler supports Run-Time Type Identification... yes
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking csignal usability... yes
checking csignal presence... yes
checking for csignal... yes
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking whether the compiler has locale... yes
checking whether the compiler has stringstream... yes
checking fenv.h usability... yes
checking fenv.h presence... yes
checking for fenv.h... yes
checking xmmintrin.h usability... yes
checking xmmintrin.h presence... yes
checking for xmmintrin.h... yes
checking whether the compiler supports std::unordered_multimap... no
checking whether the compiler supports std::tr1::unordered_multimap... yes
checking whether the compiler supports std::unordered_map... no
checking whether the compiler supports std::tr1::unordered_map... yes
checking whether the compiler supports std::unordered_set... no
checking whether the compiler supports std::tr1::unordered_set... yes
checking for dlfcn.h... (cached) yes
checking whether the compiler supports GCC C++ ABI name demangling... yes
checking whether the c++ compiler supports glibc backtrace... yes
checking for OpenMP flag of C++ compiler... -fopenmp
<<< Configuring library with OpenMP support >>>
---------------------------------------------
----- Done configuring compiler features ----
---------------------------------------------
---------------------------------------------
----- Configuring core library features -----
---------------------------------------------
<<< Configuring library to require ``include "libmesh/etc.h"'' style >>>
<<< Configuring library to keep names in libMesh namespace >>>
configuring size of boundary_id... 2
configuring size of dof_id... 4
configuring size of processor_id... 2
configuring size of subdomain_id... 2
<<< Configuring library with AMR support >>>
<<< Configuring library with variational smoother support >>>
<<< Configuring library with periodic BC support >>>
<<< Configuring library with Dirichlet constraint support >>>
<<< Configuring library to use ghosted local vectors >>>
<<< Configuring library with higher order p-FEM shapes >>>
<<< Configuring library with second derivatives >>>
checking rpc/rpc.h usability... yes
checking rpc/rpc.h presence... yes
checking for rpc/rpc.h... yes
checking for xdrstdio_create... yes
<<< Configuring library with XDR support >>>
<<< Configuring library with real number support >>>
<<< Configuring library with reference counting support >>>
<<< Configuring library example suite support >>>
---------------------------------------------
-- Done configuring core library features ---
---------------------------------------------
---------------------------------------------
----- Configuring for optional packages -----
---------------------------------------------
checking for boostlib >= 1.20.0... yes
<<< Using external boost installation >>>
checking for petscarch... no
checking /include/petscversion.h usability... no
checking /include/petscversion.h presence... no
checking for /include/petscversion.h... no
<<< PETSc disabled. Will try configuring MPI now... >>>
note: MPI library path not given... trying prefix=/usr
g++ Compiler Does NOT Support MPI...
checking /usr/include/tbb/task_scheduler_init.h usability... no
checking /usr/include/tbb/task_scheduler_init.h presence... no
checking for /usr/include/tbb/task_scheduler_init.h... no
checking whether the compiler supports std::thread... no
checking whether TBB supports tbb::tbb_thread... no
<<< Configuring library with Laspack support >>>
<<< Configuring library with SFC support >>>
checking zlib.h usability... yes
checking zlib.h presence... yes
checking for zlib.h... yes
checking for gzopen in -lz... yes
<<< Configuring library with gzstreams support >>>
checking for bzip2... bzip2
checking for bunzip2... bunzip2
<<< Using bzip2/bunzip2 for writing/reading compressed .bz2 files >>>
checking for xz... none
checking TECIO.h usability... yes
checking TECIO.h presence... yes
checking for TECIO.h... yes
<<< Configuring library with Tecplot API support (v11.2) >>>
<<< Configuring library with Metis support >>>
checking for doxygen... no
<<< Configuring library with Tetgen support >>>
<<< Configuring library with Triangle support >>>
<<< Configuring library with GMV support >>>
checking /vtkConfigure.h usability... no
checking /vtkConfigure.h presence... no
checking for /vtkConfigure.h... no
VTK header files not found!
checking /usr/include/Eigen/Eigen usability... no
checking /usr/include/Eigen/Eigen presence... no
checking for /usr/include/Eigen/Eigen... no
Eigen header files not found!
checking /usr/include/glpk.h usability... no
checking /usr/include/glpk.h presence... no
checking for /usr/include/glpk.h... no
GLPK header files not found!
<<< Configuring library with NetCDF version 4 support >>>
defining -DNOT_NETCDF4 for our Exodus build
<<< Configuring library with Exodus version v5.22 support >>>
<<< Configuring library with libHilbert support >>>
>>> Disabling fparser optimization on darwin12.2.1 <<<
checking for a sed that does not truncate output... (cached) /usr/bin/sed
checking for bison... bison -y
<<< Configuring library with fparser support (release version) >>>
checking for cppunit-config... no
checking for Cppunit - version >= 1.10.0... no
<<< Configuring library with nanoflann KDtree support >>>
----------------------------------------------
--- Done configuring for optional packages ---
----------------------------------------------
removing duplicate include paths...
removing duplicate libraries...
checking for git... /usr/bin/git
error: Malformed value for push.default: simple
error: Must be one of nothing, matching, tracking or current.
fatal: bad config file line 8 in /Users/benkirk/.gitconfig
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating include/Makefile
config.status: creating include/libmesh/Makefile
config.status: creating contrib/Makefile
config.status: creating contrib/utils/Makefile
config.status: creating contrib/utils/Make.common
config.status: creating tests/Makefile
config.status: creating doc/Doxyfile
config.status: creating contrib/utils/libmesh.pc
config.status: creating contrib/utils/libmesh-opt.pc
config.status: creating contrib/utils/libmesh-dbg.pc
config.status: creating contrib/utils/libmesh-devel.pc
config.status: creating contrib/utils/libmesh-prof.pc
config.status: creating contrib/utils/libmesh-oprof.pc
config.status: creating contrib/bin/libmesh-config
config.status: creating contrib/bin/xda2mgf
config.status: creating contrib/bin/create_libmesh_release
config.status: creating doc/dot
config.status: creating contrib/boost/include/Makefile
config.status: creating contrib/laspack/Makefile
config.status: creating contrib/sfcurves/Makefile
config.status: creating contrib/gzstream/Makefile
config.status: creating contrib/tecplot/tecio/Makefile
config.status: creating contrib/tecplot/binary/Makefile
config.status: creating contrib/metis/Makefile
config.status: creating contrib/parmetis/Makefile
config.status: creating contrib/tetgen/Makefile
config.status: creating contrib/triangle/Makefile
config.status: creating contrib/gmv/Makefile
config.status: creating contrib/netcdf/v3/Makefile
config.status: creating contrib/exodusii/v5.09/Makefile
config.status: creating contrib/exodusii/v5.22/exodus/cbind/Makefile
config.status: creating contrib/nemesis/v3.09/Makefile
config.status: creating contrib/nemesis/v5.22/nemesis/Makefile
config.status: creating contrib/libHilbert/Makefile
config.status: creating contrib/fparser/Makefile
config.status: creating contrib/fparser/extrasrc/Makefile
config.status: creating contrib/nanoflann/Makefile
config.status: creating examples/introduction/introduction_ex1/Makefile
config.status: creating examples/introduction/introduction_ex2/Makefile
config.status: creating examples/introduction/introduction_ex3/Makefile
config.status: creating examples/introduction/introduction_ex4/Makefile
config.status: creating examples/introduction/introduction_ex5/Makefile
config.status: creating examples/adaptivity/adaptivity_ex1/Makefile
config.status: creating examples/adaptivity/adaptivity_ex2/Makefile
config.status: creating examples/adaptivity/adaptivity_ex3/Makefile
config.status: creating examples/adaptivity/adaptivity_ex4/Makefile
config.status: creating examples/adaptivity/adaptivity_ex5/Makefile
config.status: creating examples/adjoints/adjoints_ex1/Makefile
config.status: creating examples/adjoints/adjoints_ex2/Makefile
config.status: creating examples/adjoints/adjoints_ex3/Makefile
config.status: creating examples/adjoints/adjoints_ex4/Makefile
config.status: creating examples/adjoints/adjoints_ex5/Makefile
config.status: creating examples/eigenproblems/eigenproblems_ex1/Makefile
config.status: creating examples/eigenproblems/eigenproblems_ex2/Makefile
config.status: creating examples/eigenproblems/eigenproblems_ex3/Makefile
config.status: creating examples/fem_system/fem_system_ex1/Makefile
config.status: creating examples/fem_system/fem_system_ex2/Makefile
config.status: creating examples/solution_transfer/solution_transfer_ex1/Makefile
config.status: creating examples/miscellaneous/miscellaneous_ex1/Makefile
config.status: creating examples/miscellaneous/miscellaneous_ex2/Makefile
config.status: creating examples/miscellaneous/miscellaneous_ex3/Makefile
config.status: creating examples/miscellaneous/miscellaneous_ex4/Makefile
config.status: creating examples/miscellaneous/miscellaneous_ex5/Makefile
config.status: creating examples/miscellaneous/miscellaneous_ex6/Makefile
config.status: creating examples/miscellaneous/miscellaneous_ex7/Makefile
config.status: creating examples/miscellaneous/miscellaneous_ex8/Makefile
config.status: creating examples/subdomains/subdomains_ex1/Makefile
config.status: creating examples/subdomains/subdomains_ex2/Makefile
config.status: creating examples/systems_of_equations/systems_of_equations_ex1/Makefile
config.status: creating examples/systems_of_equations/systems_of_equations_ex2/Makefile
config.status: creating examples/systems_of_equations/systems_of_equations_ex3/Makefile
config.status: creating examples/systems_of_equations/systems_of_equations_ex4/Makefile
config.status: creating examples/systems_of_equations/systems_of_equations_ex5/Makefile
config.status: creating examples/systems_of_equations/systems_of_equations_ex6/Makefile
config.status: creating examples/reduced_basis/reduced_basis_ex1/Makefile
config.status: creating examples/reduced_basis/reduced_basis_ex2/Makefile
config.status: creating examples/reduced_basis/reduced_basis_ex3/Makefile
config.status: creating examples/reduced_basis/reduced_basis_ex4/Makefile
config.status: creating examples/reduced_basis/reduced_basis_ex5/Makefile
config.status: creating examples/reduced_basis/reduced_basis_ex6/Makefile
config.status: creating examples/reduced_basis/reduced_basis_ex7/Makefile
config.status: creating examples/transient/transient_ex1/Makefile
config.status: creating examples/transient/transient_ex2/Makefile
config.status: creating examples/vector_fe/vector_fe_ex1/Makefile
config.status: creating examples/vector_fe/vector_fe_ex2/Makefile
config.status: creating examples/vector_fe/vector_fe_ex3/Makefile
config.status: creating examples/Makefile
config.status: creating include/libmesh_config.h.tmp
config.status: executing include/libmesh_config.h commands
config.status: creating include/libmesh_config.h - prefix LIBMESH for include/libmesh_config.h.tmp defines
config.status: executing depfiles commands
config.status: executing libtool commands
=== configuring in contrib/netcdf/v4 (/Users/benkirk/codes/libmesh/xcode/contrib/netcdf/v4)
configure: running /bin/sh ../../../../contrib/netcdf/v4/configure --disable-option-checking '--prefix=/Users/benkirk/codes/libmesh/xcode/_inst' 'libmesh_CXXFLAGS=-DOMPI_SKIP_MPICXX' 'PETSC_ARCH=macosx' '--disable-netcdf-4' '--disable-testsets' 'CXX=g++' 'CC=gcc' 'F77=' 'FC=' --cache-file=/dev/null --srcdir=../../../../contrib/netcdf/v4
configure: netCDF 4.2.1.1
checking build system type... x86_64-apple-darwin12.2.1
checking host system type... x86_64-apple-darwin12.2.1
checking target system type... x86_64-apple-darwin12.2.1
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... ../../../../contrib/netcdf/v4/install-sh -c -d
checking for gawk... no
checking for mawk... no
checking for nawk... no
checking for awk... awk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
configure: checking user options
checking whether a win32 DLL is desired... no
checking whether a NCIO_MINBLOCKSIZE was specified... 256
checking if fsync support is enabled... yes
checking whether extra valgrind tests should be run... no
checking whether we should try to build netCDF-4... no
checking whether reading of HDF4 SD files is to be enabled... no
checking whether to fetch some sample HDF4 files from Unidata ftp site to test HDF4 reading (requires wget)... no
checking whether parallel I/O for classic and 64-bit offset files using parallel-netcdf is to be enabled... no
checking whether extra example tests should be run... no
checking whether parallel IO tests should be run... no
checking whether a default chunk size in bytes was specified... 4194304
checking whether a maximum per-variable cache size for HDF5 was specified... 67108864
checking whether a number of chunks for the default per-variable cache was specified... 10
checking whether a default file cache size for HDF5 was specified... 4194304
checking whether a default file cache maximum number of elements for HDF5 was specified... 1009
checking whether a default cache preemption for HDF5 was specified... 0.75
checking whether netCDF-4 logging is enabled... no
checking whether cdmremote client is to be built... no
checking whether DAP client is to be built... yes
checking for style of include used by make... GNU
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking dependency style of gcc... gcc3
checking for curl_easy_setopt in -lcurl... yes
checking for library containing curl_easy_setopt... -lcurl
checking whether dap remote testing should be enabled (default off)... no
checking whether netcdf4 group names should be enabled (default on)... yes
checking whether the time-consuming dap tests should be enabled (default off)... no
checking whether netCDF extra tests should be run (developers only)... no
checking whether FFIO will be used... no
checking whether examples should be built... yes
checking whether v2 netCDF API should be built... yes
checking whether the ncgen/ncdump/nccopy should be built... yes
checking whether test should be built and run... no
checking whether large file (> 2GB) tests should be run... no
checking whether benchmaks should be run (experimental)... no
checking whether extreme numbers should be used in tests... yes
checking where to put large temp files if large file tests are run... .
configure: finding C compiler
checking for gcc... (cached) gcc
checking whether we are using the GNU C compiler... (cached) yes
checking whether gcc accepts -g... (cached) yes
checking for gcc option to accept ISO C89... (cached) none needed
checking dependency style of gcc... (cached) gcc3
checking whether gcc and cc understand -c and -o together... yes
checking for an ANSI C-conforming const... yes
checking whether a CURLOPT_KEYPASSWD is defined... yes
configure: setting up libtool
checking how to print strings... printf
checking for a sed that does not truncate output... /usr/bin/sed
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for fgrep... /usr/bin/grep -F
checking for ld used by gcc... /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld
checking if the linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) is GNU ld... no
checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm
checking the name lister (/usr/bin/nm) interface... BSD nm
checking whether ln -s works... yes
checking the maximum length of command line arguments... 196608
checking whether the shell understands some XSI constructs... yes
checking whether the shell understands "+="... yes
checking how to convert x86_64-apple-darwin12.2.1 file names to x86_64-apple-darwin12.2.1 format... func_convert_file_noop
checking how to convert x86_64-apple-darwin12.2.1 file names to toolchain format... func_convert_file_noop
checking for /usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld option to reload object files... -r
checking for objdump... no
checking how to recognize dependent libraries... pass_all
checking for dlltool... no
checking how to associate runtime and link libraries... printf %s\n
checking for ar... ar
checking for archiver @FILE support... no
checking for strip... strip
checking for ranlib... ranlib
checking command to parse /usr/bin/nm output from gcc object... ok
checking for sysroot... no
checking for mt... no
checking if : is a manifest tool... no
checking for dsymutil... dsymutil
checking for nmedit... nmedit
checking for lipo... lipo
checking for otool... otool
checking for otool64... no
checking for -single_module linker flag... yes
checking for -exported_symbols_list linker flag... yes
checking for -force_load linker flag... yes
checking how to run the C preprocessor... gcc -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking for dlfcn.h... yes
checking for objdir... .libs
checking if gcc supports -fno-rtti -fno-exceptions... no
checking for gcc option to produce PIC... -fno-common -DPIC
checking if gcc PIC flag -fno-common -DPIC works... yes
checking if gcc static flag -static works... no
checking if gcc supports -c -o file.o... yes
checking if gcc supports -c -o file.o... (cached) yes
checking whether the gcc linker (/usr/llvm-gcc-4.2/libexec/gcc/i686-apple-darwin11/4.2.1/ld) supports shared libraries... yes
checking dynamic linker characteristics... darwin12.2.1 dyld
checking how to hardcode library paths into programs... immediate
checking whether stripping libraries is possible... yes
checking if libtool supports shared libraries... yes
checking whether to build shared libraries... yes
checking whether to build static libraries... yes
configure: finding other utilities
checking for doxygen... no
configure: WARNING: Doxygen not found - documentation will not be built
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... no
configure: displaying some results
checking CPPFLAGS...
checking CC CFLAGS... gcc -g -O2
checking type gcc... gcc is hashed (/usr/bin/gcc)
checking CXX... g++
checking CXXFLAGS...
checking type g++... g++ is /usr/bin/g++
checking FC... unset
checking F90... unset
checking AR... ar
checking AR_FLAGS... cru
checking type ar... ar is hashed (/usr/bin/ar)
checking NM... /usr/bin/nm
checking NMFLAGS...
configure: checking types, headers, and functions
checking for stdlib.h... (cached) yes
checking for sys/types.h... (cached) yes
checking sys/param.h usability... yes
checking sys/param.h presence... yes
checking for sys/param.h... yes
checking for dirent.h that defines DIR... yes
checking for library containing opendir... none required
checking for ANSI C header files... (cached) yes
checking for sys/wait.h that is POSIX.1 compatible... yes
checking whether time.h and sys/time.h may both be included... yes
checking locale.h usability... yes
checking locale.h presence... yes
checking for locale.h... yes
checking stdio.h usability... yes
checking stdio.h presence... yes
checking for stdio.h... yes
checking stdarg.h usability... yes
checking stdarg.h presence... yes
checking for stdarg.h... yes
checking errno.h usability... yes
checking errno.h presence... yes
checking for errno.h... yes
checking ctype.h usability... yes
checking ctype.h presence... yes
checking for ctype.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking malloc.h usability... no
checking malloc.h presence... no
checking for malloc.h... no
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for strings.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/stat.h... (cached) yes
checking getopt.h usability... yes
checking getopt.h presence... yes
checking for getopt.h... yes
checking sys/time.h usability... yes
checking sys/time.h presence... yes
checking for sys/time.h... yes
checking for vprintf... yes
checking for _doprnt... no
checking sys/resource.h usability... yes
checking sys/resource.h presence... yes
checking for sys/resource.h... yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for strlcat... yes
checking for strerror... yes
checking for snprintf... yes
checking for strchr... yes
checking for strrchr... yes
checking for strcat... yes
checking for strcpy... yes
checking for strdup... yes
checking for strcasecmp... yes
checking for strtod... yes
checking for strtoll... yes
checking for strtoull... yes
checking for strstr... yes
checking for mkstemp... yes
checking for rand... yes
checking for getrlimit... yes
checking for gettimeofday... yes
checking for fsync... yes
checking for MPI_Comm_f2c... no
checking whether in-memory files are enabled... yes
checking for memmove... yes
checking for getpagesize... yes
checking for sysconf... yes
checking whether mmap is enabled for in-memory files... no
checking for stdlib.h... (cached) yes
checking for unistd.h... (cached) yes
checking for sys/param.h... (cached) yes
checking for getpagesize... (cached) yes
checking for working mmap... yes
checking for mremap... no
mmap function or mremap function is not available: disabling mmap
checking for size_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking whether isnan is declared... yes
checking whether isinf is declared... yes
checking whether isfinite is declared... yes
checking whether signbit is declared... yes
checking for struct stat.st_blksize... yes
checking for IEEE floating point format... yes
checking for size_t... (cached) yes
checking for off_t... yes
checking for ssize_t... yes
checking for ptrdiff_t... yes
checking for uchar... no
checking for longlong... no
checking whether char is unsigned... no
checking whether byte ordering is bigendian... no
checking size of short... 2
checking size of int... 4
checking size of long... 8
checking size of long long... 8
checking size of float... 4
checking size of double... 8
checking size of off_t... 8
checking size of size_t... 8
checking for library containing deflate... -lz
checking for floor in -lm... yes
checking what to call the output of the ftpbin target... binary-netcdf-4.2.1.1_nc3.tar g++
checking binary distribution directory... /home/ftp/pub/binary/dummy_system
checking value of LIBS... -lm -lz -lcurl
configure: generating header files and makefiles
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating nc-config
config.status: creating netcdf.pc
config.status: creating include/Makefile
config.status: creating h5_test/Makefile
config.status: creating man4/Makefile
config.status: creating man4/images/Makefile
config.status: creating libsrc/Makefile
config.status: creating libsrc4/Makefile
config.status: creating nctest/Makefile
config.status: creating nc_test4/Makefile
config.status: creating nc_test/Makefile
config.status: creating ncdump/Makefile
config.status: creating ncgen3/Makefile
config.status: creating ncgen/Makefile
config.status: creating examples/Makefile
config.status: creating examples/C/Makefile
config.status: creating examples/CDL/Makefile
config.status: creating oc/Makefile
config.status: creating libdap2/Makefile
config.status: creating libcdmr/Makefile
config.status: creating librpc/Makefile
config.status: creating libdispatch/Makefile
config.status: creating liblib/Makefile
config.status: creating ncdump/cdl4/Makefile
config.status: creating ncdump/expected4/Makefile
config.status: creating ncdap_test/Makefile
config.status: creating ncdap_test/testdata3/Makefile
config.status: creating ncdap_test/expected3/Makefile
config.status: creating ncdap_test/expected4/Makefile
config.status: creating ncdap_test/expectremote3/Makefile
config.status: creating ncdap_test/expectremote4/Makefile
config.status: creating config.h
config.status: executing depfiles commands
config.status: executing libtool commands
----------------------------------- SUMMARY -----------------------------------
Package version.................... : libmesh-0.9.1pre
C++ compiler type.................. : gcc4.2
C++ compiler....................... : g++
C compiler......................... : gcc
Fortran compiler................... :
Build Methods...................... : dbg devel opt
CPPFLAGS...(dbg)................... : -DDEBUG
CXXFLAGS...(dbg)................... : -O0 -felide-constructors -g -ansi -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Woverloaded-virtual -DOMPI_SKIP_MPICXX -fopenmp
CFLAGS.....(dbg)................... : -g -Wimplicit -fopenmp
CPPFLAGS...(devel)................. :
CXXFLAGS...(devel)................. : -O2 -felide-constructors -g -ansi -pedantic -W -Wall -Wextra -Wno-long-long -Wunused -Wpointer-arith -Wformat -Wparentheses -Wuninitialized -funroll-loops -fstrict-aliasing -Woverloaded-virtual -Wdisabled-optimization -DOMPI_SKIP_MPICXX -fopenmp
CFLAGS.....(devel)................. : -O2 -g -Wimplicit -funroll-loops -fstrict-aliasing -fopenmp
CPPFLAGS...(opt)................... : -DNDEBUG
CXXFLAGS...(opt)................... : -O2 -felide-constructors -funroll-loops -fstrict-aliasing -Wdisabled-optimization -DOMPI_SKIP_MPICXX -fopenmp
CFLAGS.....(opt)................... : -O2 -funroll-loops -fstrict-aliasing -fopenmp
Install dir........................ : /Users/benkirk/codes/libmesh/xcode/_inst
Build user......................... : benkirk
Build host......................... : elfboy
Build architecture................. : x86_64-apple-darwin12.2.1
Git revision....................... :
Library Features:
adaptive mesh refinement......... : yes
complex variables................ : no
example suite.................... : yes
ghosted vectors.................. : yes
high-order shape functions....... : yes
id size (boundaries)............. : 2 bytes
id size (dofs)................... : 4 bytes
id size (processors)............. : 2 bytes
id size (subdomains)............. : 2 bytes
infinite elements................ : no
Dirichlet constraints............ : yes
node constraints................. : no
parallel mesh.................... : no
performance logging.............. : no
periodic boundary conditions..... : yes
reference counting............... : yes
shape function 2nd derivatives... : yes
stack trace files................ : no
variational smoother............. : yes
xdr binary I/O................... : yes
Optional Packages:
boost............................ : yes
cppunit.......................... : no
eigen............................ : no
exodus........................... : yes
version....................... : v5.22
fparser.......................... : yes
build from version............ : release
glpk............................. : no
gmv.............................. : yes
gzstream......................... : yes
hdf5............................. : no
laspack.......................... : yes
libhilbert....................... : yes
metis............................ : yes
mpi.............................. : no
nanoflann........................ : yes
nemesis.......................... : no
netcdf........................... : yes
version....................... : 4
openmp........................... : yes
parmetis......................... : no
petsc............................ : no
sfcurves......................... : yes
slepc............................ : no
tbb.............................. : no
c++ threads...................... : no
tecio............................ : no
tecplot...(vendor binaries)...... : yes
tetgen........................... : yes
triangle......................... : yes
trilinos......................... : no
vtk.............................. : no
libmesh_optional_INCLUDES........ : -I/opt/local/include
libmesh_optional_LIBS............ : -lz
-------------------------------------------------------------------------------
Configure complete, now type 'make' and then 'make install'.
---------------------------------------------
--------- Done Configuring libMesh ----------
---------------------------------------------
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