andrewparkermorgan

#' Draw a haplotype bifurcation diagram
#' 
#' @param hh an object of class `haplohh` (from rehh package)
#' @param focal genomic position of the focal site
#' @param left extend haplotypes this many (variant) sites to the left of the focal site
#' @param right extend haplotypes this many (variant) sites to the right of the focal site
#' @param palette name of an RColorBrewer palette used for colors
#' @param reverse logical; if `TRUE`, put derived allele in upper panel
#' @param relabel a named list to use for re-labelling panels; default labels are 'ancestral' and 'derived'
#' @param ... other arguments passed through to rehh::bifurcation.diagram()

stephenhardy

-- Remove the history from 
rm -rf .git

-- recreate the repos from the current content only
git init
git add .
git commit -m "Initial commit"

-- push to the github remote repos ensuring you overwrite history
git remote add origin git@github.com:<YOUR ACCOUNT>/<YOUR REPOS>.git