compile XC (https://github.com/xcfem) on Ubuntu Bionic Beaver (18.04)

Bionic--XC_all.sh

#!/bin/bash

# Released under GPL v2.0
# bernd@bimstatik.org

# tested on Ubuntu Bionic = 18.04
# username on my vagrant box = ubuntu

# cd ~            # use if start on a local machine or inside a virtual machine
cd /home/ubuntu   # use with a vagrant box, because cd ~ returns  /root

cd Documents
sudo rm -rf build_xc
mkdir build_xc
cd build_xc
base_dir=`pwd`


##########################################################
# update system
sudo apt-get update
sudo apt-get dist-upgrade -y
sudo apt-get autoremove -y


##########################################################
# install packages apt-get

packages_build="\
    git         \
    cmake       \
    g++         \
    gfortran    \
    libboost-all-dev"
sudo apt-get install -y $packages_build

packages_lib="\
    libarpack2-dev              \
    libarpack++2-dev            \
    libcgal-dev                 \
    libdb-dev                   \
    libf2c2-dev                 \
    libglib2.0-dev              \
    libgmp3-dev                 \
    libgtk2.0-dev               \
    libgtkgl2.0-dev             \
    libgtkglextmm-x11-1.2-dev   \
    libgtkmm-2.4-dev            \
    libgts-bin                  \
    libgts-dev                  \
    liblapack-dev               \
    libmpfr-dev                 \
    libmysql++-dev              \
    libplot-dev                 \
    libsqlite3-dev              \
    libsuperlu-dev              \
    libsuitesparse-dev          \
    libvtk6-dev                 \
    libx11-dev                  \
    libmetis-dev"
sudo apt-get install -y $packages_lib

packages_dev="\
    cimg-dev  \
    petsc-dev \
    tcl-dev"
sudo apt-get install -y $packages_dev

packages_python="\
    python-vtk6         \
    python-scipy        \
    python-sympy        \
    python-matplotlib   \
    python-pandas       \
    python-sklearn      \
    python-pip"
sudo apt-get install -y $packages_python

packages_div="\
    gnuplot \
    bc"
# bc is needed by xc_utils verification tests
sudo apt-get install -y $packages_div


# install nonfree packages (ubuntu does not know nonfree, means we gone just install)
packages_nonfree="\
    libparmetis-dev"
sudo apt-get install -y $packages_nonfree


##########################################################
# install packages pip (pip has to be installed, see Python packages)
sudo -H pip install mayavi


##########################################################
# clean system
sudo apt-get clean


##########################################################
# clone xc_basic, xc_utils, XC
cd $base_dir
git clone https://github.com/xcfem/xc_basic/ xc_basic
git clone https://github.com/xcfem/xc_utils/ xc_utils
git clone https://github.com/xcfem/xc/ xc


##########################################################
# build xc_basic
cd $base_dir
mkdir build-xc_basic
cd build-xc_basic
cmake ../xc_basic/src
make -j 2
sudo make install
## source needed as include dir for xc_utils, includes are not installed into /usr/local/include
## in xc_utils sqlite will only be found if build of xc_basic will not be removed
## or add find_packages sqlite to xc_utils, see a commit on a branch in my repo of xc_utils


##########################################################
# build xc_utils
cd $base_dir
mkdir build-xc_utils
cd build-xc_utils
cmake ../xc_utils/src
make -j 2
sudo make install
cd $base_dir/xc_utils/python_modules
sudo sh local_install.sh


##########################################################
# build  XC
cd $base_dir
mkdir build-xc
cd build-xc
cmake ../xc/src
make -j 2
sudo make install
cd $base_dir/xc/python_modules
sudo sh local_install.sh


##########################################################
# run unit tests
cd $base_dir/xc_utils/verif
sh run_verif.sh

cd $base_dir/xc/verif
sh run_verif.sh