We'd like to communicate using this type of thing:
- http://docs.indivohealth.org/en/v2.0.0/coding-systems.html
- http://wiki.chip.org/indivo/index.php/HOWTO:_install_Indivo_X
- http://dev.smartplatforms.org/reference/rest_api/
- http://dev.smartplatforms.org/reference/data_model/
- http://dev.smartplatforms.org/reference/app_manifest/
We have some example records here:
- https://github.com/medevice-users/diabetes/blob/master/trailing-500.txt
- https://github.com/jebeck/iPancreas
- https://github.com/bewest/decoding-carelink/tree/rewriting/analysis/bewest-pump
The
*.markdown filesshould line up with the*.csvin this directory. - https://github.com/bewest/decoding-carelink/blob/rewriting/Carelink-208850-2012-08.csv
- https://github.com/bewest/decoding-carelink/blob/rewriting/Carelink-208850-2006-07-export.csv
EG:
2011-03-07T19:04:12 90
2011-03-07T17:21:34 143
2011-03-07T16:44:14 121
2011-03-07T14:45:46 144
So we have the time and the value, but what is the LOINC code?
bewest@paragon:~/Downloads/loinc$ grep glucose ./* | wc -l
351
bewest@paragon:~/Downloads/loinc$ grep glucose ./* | grep -v -i -E "tolerance|enzyme|amniotic|peri" | wc -l
24
bewest@paragon:~/Downloads/loinc$
bewest@paragon:~/Downloads/loinc$ grep glucose ./* | grep -v -i -E "tolerance|enzyme|amniotic|peri"
grep -i glucose ./* | grep -v -i -E "tolerance|enzyme|amniotic|peri" | grep -i meter
./LOINCDB.TXT:"14743-9" "Glucose" "SCnc" "Pt" "BldC" "Qn" "Glucometer" "CHEM" "OMH" "19980116" "ADD" "ACTIVE" 1 "CORN SUGAR, D GLUCOPYRANOSE, D GLUCOSE, D GLUCOSE, DEXTROSE, GLU, GRAPE SUGAR," "Y" "Glu; Gluc; Glucoseur; Substance concentration; Level; Point in time; Random; Cap blood; Cap bld; Capillary bld; Capillary blood; Finger stick; Quantitative; QNT; Quant; Quan; Glucomtr; Chemistry" "Glucose BldC Glucomtr-sCnc" "Both" "mmol/L" "Glucose [Moles/volume] in Capillary blood by Glucometer" "NM/ST" "PQ" "mmol/L" 0 0 0
./LOINCDB.TXT:"43151-0" "Glucose meter device panel" "-" "Pt" "^Patient" "-" "PANEL.DEVICES" "SH" "20051117" "ADD" "ACTIVE" 2 "N" "; Glucose Meter Device Pnl; Glu; Gluc; Glucoseur; Point in time; Random; Pan; Panl" "Glucose Meter Device Pnl" "Order" "Glucose meter device panel" 0 0 0
./LOINCDB.TXT:"41653-7" "Glucose" "MCnc" "Pt" "BldC" "Qn" "Glucometer" "CHEM" "VA" "20050705" "ADD" "ACTIVE" "Glucose finger stick" 1 "N" "mg/dL" "Glu; Gluc; Glucoseur; Mass concentration; Level; Point in time; Random; Cap blood; Cap bld; Capillary bld; Capillary blood; Finger stick; Quantitative; QNT; Quant; Quan; Glucomtr; Chemistry" "Glucose BldC Glucomtr-mCnc" "Both" "mg/dL" "Glucose [Mass/volume] in Capillary blood by Glucometer" "NM/ST" "PQ" "74-106;mg/dL" "mg/dL" 0 41 0
./LOINCDB.TXT:"41896-2" "Class" "Type" "Pt" "Glucose meter device" "Nom" "DEVICES" "SH" "20050727" "ADD" "ACTIVE" 2 "N" "Typ; Point in time; Random; Glucose Mtr Dev; Nominal" "Glucose Mtr Dev Class" "Observation" "Type of Glucose meter device" 0 0 0
./LOINCDB.TXT:"41897-0" "Vendor device name" "ID" "Pt" "Glucose meter device" "Nom" "DEVICES" "SH" "20050727" "ADD" "ACTIVE" 2 "ONETOUCH® II, ONETOUCH® PROFILE®, ONETOUCH® SURESTEP®, ONETOUCH® FASTTAKE®, ONETOUCH® BASIC®, ONETOUCH® ULTRA®, ONETOUCH® ULTRASMART®, INDUO®, GLUCOMETER ELITE XL DIABETES CARE SYSTEM, ASCENSIA® CONTOURTM, ASCENSIA� BREEZE�, ACCU-CHEK® ACTIVE METER, ACCU-CHEK® ADVANTAGE SYSTEM, ACCU-CHEK® COMPACT METER, ACCU-CHEK® COMPLETE METER, ACCU-CHEK® VOICEMATE SYSTEM, PMP SELFCHECK� GLUCO" "N" "; Vendor name; Identifier; Ident; Point in time; Random; Glucose Mtr Dev; Nominal" "Glucose Mtr Dev Vendor name" "Observation" "Glucose meter device Vendor name" 0 0 0
./LOINCDB.TXT:"41898-8" "Vendor device model code" "ID" "Pt" "Glucose meter device" "Nom" "CHEM" "SH" "20050727" "ADD" "ACTIVE" 1 "N" "; Model Cd; Identifier; Ident; Point in time; Random; Glucose Mtr Dev; Nominal; Chemistry" "Model Cd Glucose Mtr Dev" "Observation" "Vendor device model code of Glucose meter" 0 0 0
./LOINCDB.TXT:"41899-6" "Vendor serial number" "ID" "Pt" "Glucose meter device" "Nom" "DEVICES" "SH" "20050727" "ADD" "ACTIVE" 2 "N" "; Serial #; Num; No; Identifier; Ident; Point in time; Random; Glucose Mtr Dev; Nominal" "Glucose Mtr Dev Serial #" "Observation" "Glucose meter device Vendor serial number" 0 0 0
./LOINCDB.TXT:"41900-2" "Vendor software version" "ID" "Pt" "Glucose meter device" "Nom" "DEVICES" "SH" "20050727" "ADD" "ACTIVE" 2 "N" "; Software vers; Identifier; Ident; Point in time; Random; Glucose Mtr Dev; Nominal" "Glucose Mtr Dev Software vers" "Observation" "Glucose meter device Vendor software version" 0 0 0
./LOINCDB.TXT:"62852-9" "PhenX - fasting plasma glucose for diabetes screening - glucometer protocol" "-" "Pt" "^Patient" "-" "PhenX" "PANEL.PHENX" "PhenX" "20110105" "ADD" "This protocol provides basic information for measuring blood glucose concentrations using a glucose meter or glucometer. Participants are asked to fast for at least 9 hours (generally overnight) prior to the test. If the 9-hour fast is not met, the Diabetes Working Group recommends that the test can still be completed as a ""casual"" glucose concentration (see protocol for casual glucose reference ranges for screening plus/minus Diabetes)." "TRIAL" 2 "PhenX.140802" "N" "; Fast plasma gluc glucometer proto; Glu; Gluc; Glucoseur; Point in time; Random; SCN; Asymptomatic; Asympt" "Fast plasma gluc glucometer proto" "PhenX - fasting plasma glucose for diabetes screening - glucometer protocol" 0 0 0
We have a few different types:
Usually in mg/dL in US?
- For finger sticks (measured by glucometer; units = mg/dL?), you should probably be looking at LOINC code 41653-7 http://s.details.loinc.org/LOINC/41653-7.html . https://groups.google.com/forum/?fromgroups=#!topic/smart-app-developers/0fXhUp7rHDw
Aha! Thanks, ~@joshmandell!
- https://github.com/medevice-users/diabetes/wiki/Existing-Standards
- http://dev.smartplatforms.org/reference/app_manifest/
- https://github.com/chb/indivo_codingsystems/blob/master/data/loinc.py
- https://github.com/chb/json_ccda
- http://bioportal.bioontology.org/ontologies/47637?p=terms&conceptid=18041-4
- http://bioportal.bioontology.org/ontologies/1350?p=terms&conceptid=http%3A%2F%2Fpurl.bioontology.org%2Fontology%2FLNC%2FLP14635-4
- https://loinc.org/faq/getting-started/structure-of-loinc-codes-and-names/
- http://dev.smartplatforms.org/reference/data_model/#VitalSign
(Just added missing
sp:belongsTopredicates to the 1st examples.)