Skip to content

Instantly share code, notes, and snippets.

@bgruening
Last active October 7, 2016 20:44
Show Gist options
  • Save bgruening/bfbd735d93e5811ed5a9fbfdff73023f to your computer and use it in GitHub Desktop.
Save bgruening/bfbd735d93e5811ed5a9fbfdff73023f to your computer and use it in GitHub Desktop.
Build Docker container the involucro way with Conda packages

Building Docker containers with involucro for local Conda packages

install galaxy-lib

conda install galaxy-lib -c bioconda

build your recipe

conda build recipes/samtools

index your local builds

conda index /home/bag/miniconda2/conda-bld/linux-64/

build a container for your local package

mulled-build build-and-test 'samtools=3.0' --extra-channel file://home/bag/miniconda2/conda-bld/ --test 'samtools --help'
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment