Build UCSC tools

gistfile1.txt

#!/bin/sh

arch=x86_64
pkg=ucsc
version=v312
build_deps="libc6-dev zlib1g-dev libncurses5-dev libpng-dev unzip libmysqlclient-dev libssl-dev"
urls="
http://hgdownload.soe.ucsc.edu/admin/jksrc.${version}.zip
"

apt-get -qq update &&
    apt-get install --no-install-recommends -y $build_deps &&
    mkdir /build &&
    cd /build &&

    ( for url in $urls; do
        wget "$url" || false || exit
    done ) &&

    unzip jksrc.${version}.zip &&

    cd kent/src/ &&
    mkdir -p /bin/${arch}/ /build/dest/bin /build/dest/lib &&
    make utils &&
    mkdir -p /build/dest/ &&
    cp /root/bin/x86_64/* /build/dest/bin/ -R &&
    cp /usr/lib/libmysqlclient.so.16.0.0 /build/dest/lib/libmysqlclient.so.16 &&
    cp /usr/lib/libssl.so.0.9.8 /build/dest/lib/libssl.so.0.9.8 &&
    cp /usr/lib/libcrypto.so.0.9.8 /build/dest/lib/libcrypto.so.0.9.8 &&
    tar zcf /host/${pkg}-${version}-Linux-x86_64.tar.gz -C /build/dest .