bioinformatist

name: anaCogent5.2
channels:
  - bioconda
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/msys2/
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/menpo/
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/pytorch/
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/bioconda/
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/cloud/conda-forge/
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/main/
  - https://mirrors.tuna.tsinghua.edu.cn/anaconda/pkgs/free/

bioinformatist

#!/usr/bin/env python

from datetime import datetime
import argparse
import xml.etree.ElementTree as ET

parser = argparse.ArgumentParser('Get latest complete genome URLs from IMG XML file')
parser.add_argument("file", help = 'A XML file downloaded from IMG')
args = parser.parse_args()

bioinformatist

#!/usr/bin/env python
from bs4 import BeautifulSoup
from urllib.request import urlopen
import re
import sys
import argparse

parser = argparse.ArgumentParser('Batch get virus host name using a NCBI Taxonomy ID list')
group = parser.add_mutually_exclusive_group()
group.add_argument("-f", "--file", help = 'A file containing virus NCBI Taxonomy IDs, one ID per line')

bioinformatist

Regular Colors

Value	Color
\e[0;30m	Black
\e[0;31m	Red
\e[0;32m	Green
\e[0;33m	Yellow
\e[0;34m	Blue
\e[0;35m	Purple