bioinfornatics

/**
 * The module csv is a set of function to parse many format using a delimitter as csv file
 * Supported format:
 *  - .mat matrix file
 *  - .bed UCSC file
 * For parse a .csv file use std.csv
 */
module bed;

import std.conv;

bioinfornatics

import std.string;
import std.stdio;
import std.range;

mixin template arrayDelegator( alias instance, methods... ){
   static if( methods.length > 0 ){
        static if( methods[0] == "opIndexAssign" ){
            mixin("
    void opIndexAssign( " ~ ElementEncodingType!(typeof(instance)).stringof ~ " value, size_t index ){ 
        array[index] = value;

bioinfornatics

import std.traits;
import std.stdio;
import std.string;
import std.range;
import std.ascii; // lowercase

static string getFunctionParameterString(T, S)( T ptt, S pstc ) @safe pure nothrow{
    enum result = "";
    static if(  ptt.length > 0 && pstc.length > 0 && ptt.length == pstc.length){
        result = ptt[0].stringof ~" "~ pstc.stringof ~" ";

bioinfornatics

import std.string;
import std.stdio;
import std.range;
import std.lowercase;


mixin template delegates( alias instance, methods... ){
    static if( methods.length > 0 ){
            static if( hasmembers(instance, methods[0]) ){
                alias ReturnType!(methods[0]) type;                 // function/method type returned for first method

bioinfornatics

$ diff runtime/phobos/std/regex.d ../phobos/std/regex.d
184c184
<     $(WEB http://unicode.org/reports/tr18/, UTS 18). Specifically:
---
>     $(WEB unicode.org/reports/tr18/, UTS 18). Specifically:
5560a5561,5564
>         static if(direction == OneShot.Fwd)
>             startPc = startPc;
>         else
>             startPc = cast(uint)re.ir.length-IRL!(IR.LookbehindEnd);

bioinfornatics

#!/usr/bin/env python3
import sqlite3
import random
import string
from uuid import uuid4
from typing import List
from statistics import mean

def random_str():
    str_length = random.randint(40,50)

bioinfornatics

#!/usr/bin/env python3
import pyarrow.parquet as pq
import pyarrow as pa
import random
import string
from uuid import uuid4

def random_str():
    str_length = random.randint(40,50)
    return ''.join(random.choice(string.ascii_lowercase) for _ in range(str_length))

bioinfornatics

#!/usr/bin/env python3
import sqlite3
import random
import string
from uuid import uuid4
from typing import List, Tuple
from statistics import mean

import pyarrow as pa
import pyarrow.parquet as pq

bioinfornatics

#!/usr/bin/env python3
import sqlite3
import random
import string
from uuid import uuid4
from typing import List
from statistics import mean

def random_str():
    str_length = random.randint(40,50)

bioinfornatics

@startuml
App -> MyPluginInterface : use specialized defined API
MyPluginInterface -> MyPlugin : call load_from_directory
MyPlugin -> "abi_stable::library::RootModule" : call load_from_directory
"abi_stable::library::RootModule"  -> MysharedLib : load .so file
@enduml