biovisualize/index.html

## index.html
<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd">
<html lang="en">
<head>
  <!--
    Zoom/pan map example: integrates d3.geo and d3.behavior
    Iain Dillingham, http://dillingham.me.uk/
    With help from Jason Davies, http://www.jasondavies.com/
  -->
  <title>Zoom/pan map example</title>
  <script type="text/javascript" src="http://mbostock.github.com/d3/d3.v2.js"></script>
  <style type="text/css">
    #uk {
      fill: #E5F5F9;
      stroke: #2CA25F;
      stroke-width: 0.5;
    }
    #axes {
      stroke: #BDBDBD;
      stroke-width: 0.5;
    }
  </style>
</head>
<body>
  <div id="vis"></div>
  <script type="text/javascript">
    var w = 960;
    var h = 500;
    var proj = d3.geo.mercator();
    var path = d3.geo.path().projection(proj);
    var t = proj.translate(); // the projection's default translation
    var s = proj.scale() // the projection's default scale

    var map = d3.select("#vis").append("svg:svg")
        .attr("width", w)
        .attr("height", h)
        .call(d3.behavior.zoom().on("zoom", redraw));

    var axes = map.append("svg:g").attr("id", "axes");

    var xAxis = axes.append("svg:line")
        .attr("x1", t[0])
        .attr("y1", 0)
        .attr("x2", t[0])
        .attr("y2", h);

    var yAxis = axes.append("svg:line")
        .attr("x1", 0)
        .attr("y1", t[1])
        .attr("x2", w)
        .attr("y2", t[1]);

    var uk = map.append("svg:g").attr("id", "uk");

    d3.json("uk.json", function (json) {
      uk.selectAll("path")
          .data(json.features)
        .enter().append("svg:path")
          .attr("d", path);
    });

    function redraw() {
      // d3.event.translate (an array) stores the current translation from the parent SVG element
      // t (an array) stores the projection's default translation
      // we add the x and y vales in each array to determine the projection's new translation
      var tx = t[0] * d3.event.scale + d3.event.translate[0];
      var ty = t[1] * d3.event.scale + d3.event.translate[1];
      proj.translate([tx, ty]);

      // now we determine the projection's new scale, but there's a problem:
      // the map doesn't 'zoom onto the mouse point'
      proj.scale(s * d3.event.scale);

      // redraw the map
      uk.selectAll("path").attr("d", path);

      // redraw the x axis
      xAxis.attr("x1", tx).attr("x2", tx);

      // redraw the y axis
      yAxis.attr("y1", ty).attr("y2", ty);
    }
  </script>
</body>
</html>

## uk.json

      
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              uk.json
            
          
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	<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01//EN" "http://www.w3.org/TR/html4/strict.dtd">
	<html lang="en">
	<head>
	<!--
	Zoom/pan map example: integrates d3.geo and d3.behavior
	Iain Dillingham, http://dillingham.me.uk/
	With help from Jason Davies, http://www.jasondavies.com/
	-->
	<title>Zoom/pan map example</title>
	<script type="text/javascript" src="http://mbostock.github.com/d3/d3.v2.js"></script>
	<style type="text/css">
	#uk {
	fill: #E5F5F9;
	stroke: #2CA25F;
	stroke-width: 0.5;
	}
	#axes {
	stroke: #BDBDBD;
	stroke-width: 0.5;
	}
	</style>
	</head>
	<body>
	<div id="vis"></div>
	<script type="text/javascript">
	var w = 960;
	var h = 500;
	var proj = d3.geo.mercator();
	var path = d3.geo.path().projection(proj);
	var t = proj.translate(); // the projection's default translation
	var s = proj.scale() // the projection's default scale

	var map = d3.select("#vis").append("svg:svg")
	.attr("width", w)
	.attr("height", h)
	.call(d3.behavior.zoom().on("zoom", redraw));

	var axes = map.append("svg:g").attr("id", "axes");

	var xAxis = axes.append("svg:line")
	.attr("x1", t[0])
	.attr("y1", 0)
	.attr("x2", t[0])
	.attr("y2", h);

	var yAxis = axes.append("svg:line")
	.attr("x1", 0)
	.attr("y1", t[1])
	.attr("x2", w)
	.attr("y2", t[1]);

	var uk = map.append("svg:g").attr("id", "uk");

	d3.json("uk.json", function (json) {
	uk.selectAll("path")
	.data(json.features)
	.enter().append("svg:path")
	.attr("d", path);
	});

	function redraw() {
	// d3.event.translate (an array) stores the current translation from the parent SVG element
	// t (an array) stores the projection's default translation
	// we add the x and y vales in each array to determine the projection's new translation
	var tx = t[0] * d3.event.scale + d3.event.translate[0];
	var ty = t[1] * d3.event.scale + d3.event.translate[1];
	proj.translate([tx, ty]);

	// now we determine the projection's new scale, but there's a problem:
	// the map doesn't 'zoom onto the mouse point'
	proj.scale(s * d3.event.scale);

	// redraw the map
	uk.selectAll("path").attr("d", path);

	// redraw the x axis
	xAxis.attr("x1", tx).attr("x2", tx);

	// redraw the y axis
	yAxis.attr("y1", ty).attr("y2", ty);
	}
	</script>
	</body>
	</html>