Skip to content

Instantly share code, notes, and snippets.

View bmorphism's full-sized avatar
🦍
annealing information lattice since *2069*

Barton Rhodes bmorphism

🦍
annealing information lattice since *2069*
View GitHub Profile
@bmorphism
bmorphism / decoherence.md
Created April 6, 2024 21:21
ur a Fokker-Planck, laddie

ollama run gemma:text pulling manifest pulling df18cdedaff1... 100% ▕█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▏ 5.2 GB pulling 097a36493f71... 100% ▕█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▏ 8.4 KB pulling 4b98b1f4c59c... 100% ▕█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▏ 21 B pulling 11a9f1a6054c... 100% ▕█████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████▏ 409 B verifying sha256 digest writing manifest

@bmorphism
bmorphism / ghidra.log
Created April 4, 2024 08:15
ghidra.log
Parsing command file: config/commands/defaults.sh
Parsing command file: config/commands/search.sh
Parsing command file: config/commands/edit_linting.sh
Parsing command file: config/commands/_split_string.py
Parsing command file: config/commands/defaults.sh
Parsing command file: config/commands/search.sh
Parsing command file: config/commands/edit_linting.sh
Parsing command file: config/commands/_split_string.py
INFO 📙 Arguments: agent:
config:
@bmorphism
bmorphism / topos.bb
Created February 29, 2024 02:04
topos.bb
#!/usr/bin/env bb
(require '[babashka.process :refer [shell]])
(require '[cheshire.core :as json])
(require '[clojure.java.io :as io])
(require '[clojure.string :as str])
(require '[babashka.http-client :as client])
(import '(java.util Base64 UUID)
'(java.nio.file Files Paths)
'(java.text SimpleDateFormat)
@bmorphism
bmorphism / bruno.md
Created February 27, 2024 09:49
bruno.md

Bibliography [AAG03] [AAGM03] [ACB17] [ADG+ 16] [AGG+ 21] [ALS10] Michael Abbott, Thorsten Altenkirch, and Neil Ghani. Categories of Containers. In Andrew D. Gordon, editor, Foundations of Software Science and Computation Structures, Lecture Notes in Computer Science, pages 23–38, Berlin, Heidelberg, 2003. Springer. Michael Abbott, Thorsten Altenkirch, Neil Ghani, and Conor McBride. Derivatives of Containers. In Gerhard Goos, Juris Hartmanis, Jan Van Leeuwen, and Martin Hofmann, editors, Typed Lambda Calculi and Applications, volume 2701, pages 16–30. Springer Berlin Heidelberg, Berlin, Heidelberg, 2003. Series Title: Lecture Notes in Computer Science. Martin Arjovsky, Soumith Chintala, and L ́eon Bottou. Wasserstein GAN, December 2017. arXiv:1701.07875 [cs, stat].

@bmorphism
bmorphism / gatos.jl
Created February 25, 2024 23:13
gatos.jl
using Catlab
# Define the category of sets
C = Category()
# Define the presheaf to represent the data
data = Presheaf(C)
# Define the presheaf to represent the latent variables
latent_variables = Presheaf(C)
@bmorphism
bmorphism / operadic.sense.md
Created February 22, 2024 01:32
operadic.sense.md

In the symphony of biological complexity, operadic compositions offer a maestro's insight into the cacophony of elements engaged in life's dance. An (\infty)-topos takes center stage, offering a canvas for the operadic structures that flourish within, each a mosaic piece of biotic ingenuity.

Consider the Gene Regulatory Networks, where genes become operations, orchestrated in an elegant harmony as operadic compositions enable abstraction from molecular chatter to the emergence of phenotypic anthems. Inputs, regal regulatory cues, translate into operatic expressions through this categorical fabric, demonstrating the conceptual alliance between biology and operadic perspectives [5].

[ \mathcal{O}(g_1, \ldots, g_n) \rightarrow G ]

Where (\mathcal{O}) allegorizes the operad of regulatory interplay, (g_i) the individual gene inputs, and (G) the genesis of expressive concord. In this diagrammatic spectacle, one denotes the transmutation of

@bmorphism
bmorphism / bayesball.jl
Created February 16, 2024 09:18 — forked from mschauer/bayesball.jl
Bayes ball
using CausalInference
V = [:U, :T, :P, :O]
g = digraph([1=>3, 2=>3, 3=>4, 2=>4, 1=>4])
# Can estimate total effect T=>O without observing U?
u = 2
v = 4
∅ = Set{Int}()
observed = 2:4
collect(list_covariate_adjustment(g, u, v, ∅, observed))
@bmorphism
bmorphism / ok.md
Last active February 10, 2024 19:31
ok.md

3:30 nice to be up in San Francisco um so are we talking about um what I think is really exciting 3:37 development um in mathematics it's going to shape our future um which is really 3:42 the uh um the development over the last few years of lots of Technologies to have to to make uh machines and 3:49 computers um um help us do math um much more effectively um now this some to 3:57 some ense this is not new um we haveed used both machines and computers and I I use the terms slightly differently um

@bmorphism
bmorphism / julia.md
Created February 8, 2024 21:52
julia.md
barton@grothendieck ~ % flox activate
flox [default] barton@grothendieck ~ % julia
               _
   _       _ _(_)_     |  Documentation: https://docs.julialang.org
  (_)     | (_) (_)    |
   _ _   _| |_  __ _   |  Type "?" for help, "]?" for Pkg help.
  | | | | | | |/ _` |  |
  | | |_| | | | (_| |  |  Version 1.10.0 (2023-12-25)
 _/ |\__'_|_|_|\__'_| | Official https://julialang.org/ release
@bmorphism
bmorphism / oink.scheme
Created February 4, 2024 04:29
oink.scheme
(define (filter? exp)
(or (list-value? exp)
(not? exp)))
(define (conjoin conjuncts frame-stream)
(conjoin-mix conjuncts '() frame-stream))
(define (conjoin-mix conjs delayed-conjs frame-stream)
(if (null? conjs)
(if (null? delayed-conjs)