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bmpvieira/graph.log Secret

Created September 22, 2017 11:02
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graph.log
File was saved!
0683871 : Finished task 0683871
2209bcf : Finished task 2209bcf
Joining to task: Download URLs in input file using wget
56fd74a : === Download URLs in input file using wget ===
56fd74a : Running task 56fd74a
56fd74a : Starting resolve output for 56fd74a425b2acfc174d363e4570b4268fd4d22df44d189132d1a7ccd61cba7e
56fd74a : No matches found for pattern **/*.fastq.gz in /mnt/d/Scratch/2017-09-14_psmc-pipeline/data/56fd74a
56fd74a : Resolving input for 56fd74a
trajectory for 56fd74a425b2acfc174d363e4570b4268fd4d22df44d189132d1a7ccd61cba7e: [ '426ac0ff19388c4c30999710e412082d89c41f9a47bb39e6f9684f73a3eadf7e' ]
currentCollection: {
"70335b6fdb33eb3e693d8d836f6e8593d001718fe19bf381c1e796a5b4f98193": {
"_value": {
"type": "collection/add-output",
"name": "Generate IDs file for solenopsis",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/70335b6/solenopsis.ids.txt",
"params": [
279040,
280098
]
},
"dbf22b04897d0fdbbf3a1f2912f264cdd3e535f5f6bf55767db2b1fd0f250be8": {
"_value": {
"type": "collection/add-output",
"name": "Get reference genome metadata from NCBI",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/dbf22b0/solenopsis.metadata.json",
"params": {}
},
"0683871185bd7b2824f92249aa4f000c5deac684a371efbe20f7d0afa6e48239": {
"_value": {
"type": "collection/add-output",
"name": "From species in metadata, generate Ref Genome FASTQ download URL",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/0683871/solenopsis.urls.txt",
"params": {}
},
"426ac0ff19388c4c30999710e412082d89c41f9a47bb39e6f9684f73a3eadf7e": {
"_value": [
null,
{
"type": "collection/add-output",
"name": "Generate IDs file for solenopsis",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/70335b6/solenopsis.ids.txt",
"params": [
279040,
280098
]
},
{
"type": "collection/add-output",
"name": "Get reference genome metadata from NCBI",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/dbf22b0/solenopsis.metadata.json",
"params": {}
},
{
"type": "collection/add-output",
"name": "From species in metadata, generate Ref Genome FASTQ download URL",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/0683871/solenopsis.urls.txt",
"params": {}
},
null,
{
"type": "collection/add-output",
"name": "Generate IDs file for solenopsis",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/70335b6/solenopsis.ids.txt",
"params": [
279040,
280098
]
},
{
"type": "collection/add-output",
"name": "Get reads metadata from NCBI, including all sequencing runs accessions",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/700b10a/solenopsis.metadata.json",
"params": {}
},
{
"type": "collection/add-output",
"name": "From Runs accessions in metadata, generate ENA download URLs for Reads FASTQ",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/2209bcf/solenopsis.urls.txt",
"params": {}
}
]
}
}
},
"700b10ae0f04e178b80cab8cc6ed45765022e6862df5bc4be6bcb24fc5779c3e": {
"_value": {
"type": "collection/add-output",
"name": "Get reads metadata from NCBI, including all sequencing runs accessions",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/700b10a/solenopsis.metadata.json",
"params": {}
},
"2209bcf70b24c0a4aba66b34587fbca468cee625694c58688bee1239a85f6cf3": {
"_value": {
"type": "collection/add-output",
"name": "From Runs accessions in metadata, generate ENA download URLs for Reads FASTQ",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/2209bcf/solenopsis.urls.txt",
"params": {}
},
"426ac0ff19388c4c30999710e412082d89c41f9a47bb39e6f9684f73a3eadf7e": {
"_value": [
null,
{
"type": "collection/add-output",
"name": "Generate IDs file for solenopsis",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/70335b6/solenopsis.ids.txt",
"params": [
279040,
280098
]
},
{
"type": "collection/add-output",
"name": "Get reference genome metadata from NCBI",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/dbf22b0/solenopsis.metadata.json",
"params": {}
},
{
"type": "collection/add-output",
"name": "From species in metadata, generate Ref Genome FASTQ download URL",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/0683871/solenopsis.urls.txt",
"params": {}
},
null,
{
"type": "collection/add-output",
"name": "Generate IDs file for solenopsis",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/70335b6/solenopsis.ids.txt",
"params": [
279040,
280098
]
},
{
"type": "collection/add-output",
"name": "Get reads metadata from NCBI, including all sequencing runs accessions",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/700b10a/solenopsis.metadata.json",
"params": {}
},
{
"type": "collection/add-output",
"name": "From Runs accessions in metadata, generate ENA download URLs for Reads FASTQ",
"resolvedOutput": "/mnt/d/Scratch/2017-09-14_psmc-pipeline/data/2209bcf/solenopsis.urls.txt",
"params": {}
}
]
}
}
}
}
}
56fd74a : traverse got undefined, returning
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