Deconvolution with theoretical PSF

OpsDeconvolve.java

public class InteractiveDeconvolveTheoreticalTest<T extends RealType<T> & NativeType<T>> {

	final static ImageJ ij = new ImageJ();

	public static <T extends RealType<T> & NativeType<T>> void main(final String[] args) throws IOException {

		String libPathProperty = System.getProperty("java.library.path");
		System.out.println("Lib path:" + libPathProperty);

		ij.launch(args);

		String inputName = "C:/Users/bnorthan/Dropbox/Deconvolution_Test_Set/FromJeanYves/Slide_17015-02_512_2.tif";
		
		@SuppressWarnings("unchecked")
		Img<T> img = (Img<T>) ij.dataset().open(inputName).getImgPlus().getImg();
		Img<FloatType> imgF = ij.op().convert().float32(img);

		// create the diffraction based image 
		Img<FloatType> psf = (Img) ij.op().create().kernelDiffraction(new FinalDimensions(64, 64, 50), 1.4, 550E-09,
				1.3, 1.5, 162.5E-9, 280E-9, 0, new FloatType());

		ij.ui().show("bars ", img);
		ij.ui().show("psf", psf);

		int iterations = 30;
		
		// run Ops Richardson Lucy

		Img<FloatType> deconvolved = (Img<FloatType>) ij.op().deconvolve().richardsonLucyTV(imgF, psf, null, null, null,
				null, null, iterations, true, true, 0.0002f);
	
}