Fengyuan Hu boboppie

## SLURM_foreach.md

      
              1 file
            
          
              0 forks
            
          
              0 comments
            
          
              4 stars
            
          
                brfitzpatrick
                / SLURM_foreach.md
            
            
              Last active
              February 7, 2024 18:03
            
              
                minimal example of using `foreach` parallelism on a clusters managed by SLURM
              
          
    Job script:
#!/bin/bash

#SBATCH --job-name=rfee
#SBATCH --workdir=/home/user.name/rfee/
#SBATCH --output=r_foreach_example_console_output.txt
#SBATCH --mem-per-cpu=100 # specify RAM per CPU here in Mb
#SBATCH --time=0:02:00


## bamfilter_oneliners.md

      
              1 file
            
          
              51 forks
            
          
              17 comments
            
          
              153 stars
            
          
                davfre
                / bamfilter_oneliners.md
            
            
              Last active
              February 24, 2024 01:23
            
              
                SAM and BAM filtering oneliners
              
          
    SAM and BAM filtering one-liners
@author: David Fredman, david.fredmanAAAAAA@gmail.com (sans poly-A tail)

@dependencies: http://sourceforge.net/projects/bamtools/ and http://samtools.sourceforge.net/
Please extend with additional/faster/better solutions via a pull request!
BWA mapping (using piping for minimal disk I/O)