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bodom0015/gist:9bf5cdc2c292b2b32f079e09d7e87d7e

Created May 18, 2020 18:07
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DOI resolution issue
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gistfile1.txt
ubuntu@lambert8-dev:~/deploy-dev$ make tail_girder_err
docker exec -ti $(docker ps --filter=name=wt_girder -q) \
tail -n 200 /home/girder/.girder/logs/error.log
[2020-05-15 22:27:33,034] WARNING: WARNING: adding swagger models without specifying resources to bind to is discouraged (containerConfig).
[2020-05-15 22:27:33,034] WARNING: WARNING: adding swagger models without specifying resources to bind to is discouraged (dataSet).
[2020-05-15 22:27:33,354] WARNING: WARNING: adding swagger models without specifying resources to bind to is discouraged (dataMap).
[2020-05-15 22:27:33,355] WARNING: WARNING: adding swagger models without specifying resources to bind to is discouraged (fileMap).
[2020-05-15 22:27:33,373] WARNING: WARNING: adding swagger models without specifying resources to bind to is discouraged (containerConfig).
[2020-05-15 22:27:33,373] WARNING: WARNING: adding swagger models without specifying resources to bind to is discouraged (dataSet).
[2020-05-15 22:27:33,386] WARNING: WARNING: adding swagger models without specifying resources to bind to is discouraged (dataMap).
[2020-05-15 22:27:33,386] WARNING: WARNING: adding swagger models without specifying resources to bind to is discouraged (fileMap).
[2020-05-15 22:27:33,436] WARNING: WARNING: adding swagger models without specifying resources to bind to is discouraged (dataSet).
[2020-05-15 22:55:27,640] WARNING: [dataverse] failed to generate regex
[2020-05-15 22:55:28,182] WARNING: No object was found in the index for doi:10.7910/DVN/3MJ7IR.
[2020-05-15 22:55:31,517] ERROR: 500 Error
Traceback (most recent call last):
File "/girder/plugins/wholetale/server/lib/__init__.py", line 68, in pids_to_entities
results.append(provider.lookup(entity))
File "/girder/plugins/wholetale/server/lib/http_provider.py", line 37, in lookup
raise Exception('Failed to get size for %s' % pid)
Exception: Failed to get size for https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/3MJ7IR
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/girder/girder/api/rest.py", line 630, in endpointDecorator
val = fun(self, path, params)
File "/girder/girder/api/rest.py", line 1224, in POST
return self.handleRoute(method, path, params)
File "/girder/girder/api/rest.py", line 967, in handleRoute
val = handler(**kwargs)
File "/girder/girder/api/access.py", line 63, in wrapped
return fun(*args, **kwargs)
File "/girder/girder/api/rest.py", line 445, in wrapped
val = fun(*args, **kwargs)
File "/girder/girder/api/describe.py", line 709, in wrapped
return fun(*args, **kwargs)
File "/girder/plugins/wholetale/server/rest/tale.py", line 247, in createTaleFromDataset
lookup=True
File "/girder/plugins/wholetale/server/lib/__init__.py", line 79, in pids_to_entities
raise RuntimeError(msg.format(pid, str(exc)))
RuntimeError: Lookup for "https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/3MJ7IR" failed with: Failed to get size for https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/3MJ7IR
Additional info:
Request URL: POST https://girder.local.wholetale.org/api/v1/tale/import
Query string: url=https%3A%2F%2Fdataverse.harvard.edu%2Fdataset.xhtml%3FpersistentId%3Ddoi%3A10.7910%2FDVN%2F3MJ7IR&taleKwargs=%7B%7D&spawn=true&lookupKwargs=%7B%7D&asTale=false
Remote IP: 10.255.0.2
[2020-05-15 22:55:32,286] WARNING: No object was found in the index for doi:10.7910/DVN/3MJ7IR.
[2020-05-15 22:55:35,376] ERROR: 500 Error
Traceback (most recent call last):
File "/girder/plugins/wholetale/server/lib/__init__.py", line 68, in pids_to_entities
results.append(provider.lookup(entity))
File "/girder/plugins/wholetale/server/lib/http_provider.py", line 37, in lookup
raise Exception('Failed to get size for %s' % pid)
Exception: Failed to get size for https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/3MJ7IR
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/girder/girder/api/rest.py", line 630, in endpointDecorator
val = fun(self, path, params)
File "/girder/girder/api/rest.py", line 1224, in POST
return self.handleRoute(method, path, params)
File "/girder/girder/api/rest.py", line 967, in handleRoute
val = handler(**kwargs)
File "/girder/girder/api/access.py", line 63, in wrapped
return fun(*args, **kwargs)
File "/girder/girder/api/rest.py", line 445, in wrapped
val = fun(*args, **kwargs)
File "/girder/girder/api/describe.py", line 709, in wrapped
return fun(*args, **kwargs)
File "/girder/plugins/wholetale/server/rest/tale.py", line 247, in createTaleFromDataset
lookup=True
File "/girder/plugins/wholetale/server/lib/__init__.py", line 79, in pids_to_entities
raise RuntimeError(msg.format(pid, str(exc)))
RuntimeError: Lookup for "https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/3MJ7IR" failed with: Failed to get size for https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/3MJ7IR
Additional info:
Request URL: POST https://girder.local.wholetale.org/api/v1/tale/import
Query string: url=https%3A%2F%2Fdataverse.harvard.edu%2Fdataset.xhtml%3FpersistentId%3Ddoi%3A10.7910%2FDVN%2F3MJ7IR&taleKwargs=%7B%7D&spawn=true&lookupKwargs=%7B%7D&asTale=false
Remote IP: 10.255.0.2
[2020-05-15 22:55:36,026] WARNING: No object was found in the index for doi:10.7910/DVN/3MJ7IR.
[2020-05-15 22:55:39,027] ERROR: 500 Error
Traceback (most recent call last):
File "/girder/plugins/wholetale/server/lib/__init__.py", line 68, in pids_to_entities
results.append(provider.lookup(entity))
File "/girder/plugins/wholetale/server/lib/http_provider.py", line 37, in lookup
raise Exception('Failed to get size for %s' % pid)
Exception: Failed to get size for https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/3MJ7IR
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/girder/girder/api/rest.py", line 630, in endpointDecorator
val = fun(self, path, params)
File "/girder/girder/api/rest.py", line 1224, in POST
return self.handleRoute(method, path, params)
File "/girder/girder/api/rest.py", line 967, in handleRoute
val = handler(**kwargs)
File "/girder/girder/api/access.py", line 63, in wrapped
return fun(*args, **kwargs)
File "/girder/girder/api/rest.py", line 445, in wrapped
val = fun(*args, **kwargs)
File "/girder/girder/api/describe.py", line 709, in wrapped
return fun(*args, **kwargs)
File "/girder/plugins/wholetale/server/rest/tale.py", line 247, in createTaleFromDataset
lookup=True
File "/girder/plugins/wholetale/server/lib/__init__.py", line 79, in pids_to_entities
raise RuntimeError(msg.format(pid, str(exc)))
RuntimeError: Lookup for "https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/3MJ7IR" failed with: Failed to get size for https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/3MJ7IR
Additional info:
Request URL: POST https://girder.local.wholetale.org/api/v1/tale/import
Query string: url=https%3A%2F%2Fdataverse.harvard.edu%2Fdataset.xhtml%3FpersistentId%3Ddoi%3A10.7910%2FDVN%2F3MJ7IR&taleKwargs=%7B%7D&spawn=true&lookupKwargs=%7B%7D&asTale=false
Remote IP: 10.255.0.2
[2020-05-15 22:55:39,663] WARNING: No object was found in the index for doi:10.7910/DVN/3MJ7IR.
[2020-05-15 22:55:42,697] ERROR: 500 Error
Traceback (most recent call last):
File "/girder/plugins/wholetale/server/lib/__init__.py", line 68, in pids_to_entities
results.append(provider.lookup(entity))
File "/girder/plugins/wholetale/server/lib/http_provider.py", line 37, in lookup
raise Exception('Failed to get size for %s' % pid)
Exception: Failed to get size for https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/3MJ7IR
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/girder/girder/api/rest.py", line 630, in endpointDecorator
val = fun(self, path, params)
File "/girder/girder/api/rest.py", line 1224, in POST
return self.handleRoute(method, path, params)
File "/girder/girder/api/rest.py", line 967, in handleRoute
val = handler(**kwargs)
File "/girder/girder/api/access.py", line 63, in wrapped
return fun(*args, **kwargs)
File "/girder/girder/api/rest.py", line 445, in wrapped
val = fun(*args, **kwargs)
File "/girder/girder/api/describe.py", line 709, in wrapped
return fun(*args, **kwargs)
File "/girder/plugins/wholetale/server/rest/tale.py", line 247, in createTaleFromDataset
lookup=True
File "/girder/plugins/wholetale/server/lib/__init__.py", line 79, in pids_to_entities
raise RuntimeError(msg.format(pid, str(exc)))
RuntimeError: Lookup for "https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/3MJ7IR" failed with: Failed to get size for https://dataverse.harvard.edu/dataset.xhtml?persistentId=doi:10.7910/DVN/3MJ7IR
Additional info:
Request URL: POST https://girder.local.wholetale.org/api/v1/tale/import
Query string: url=https%3A%2F%2Fdataverse.harvard.edu%2Fdataset.xhtml%3FpersistentId%3Ddoi%3A10.7910%2FDVN%2F3MJ7IR&taleKwargs=%7B%7D&spawn=true&lookupKwargs=%7B%7D&asTale=false
Remote IP: 10.255.0.2
ubuntu@lambert8-dev:~/deploy-dev$
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