EasyBuild test report for easybuilders/easybuild-easyconfigs PR(s) #20551

easybuild_test_report_20551_easybuilders_preasybuild-easyconfigs_20242830-UTC-16-28-18.md

Test report for PR(s) easybuilders/easybuild-easyconfigs#20551

Test result

Build succeeded for 5 out of 5 (5 easyconfigs in total)

Overview of tested easyconfigs (in order)

• SUCCESS jupyter-contrib-nbextensions-0.7.0-GCCcore-12.3.0.eb
• SUCCESS pyro-ppl-1.9.0-foss-2023a-CUDA-12.1.1.eb
• SUCCESS pyro-ppl-1.9.0-foss-2023a.eb
• SUCCESS CellBender-0.3.0-foss-2023a-CUDA-12.1.1.eb
• SUCCESS CellBender-0.3.0-foss-2023a.eb

Time info

• start: Thu, 30 May 2024 16:18:12 +0000 (UTC)
• end: Thu, 30 May 2024 16:28:18 +0000 (UTC)

EasyBuild info

• easybuild-framework version: 4.9.2.dev0-r431adef63d590a44f083aca3cb18536889698d1a
• easybuild-easyblocks version: 4.9.2.dev0-r743662d06caf460a9c3edd5e433ee37d5283f0a3
• command line:

eb -dfr -u --from-pr 20551

• full configuration (includes defaults):

--accept-eula-for='.*'
--accept-eula=''
--allow-loaded-modules='EasyBuild'
--buildpath='/tmp/vsc40023/easybuild_build'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/skylake-ib/containers'
--cuda-compute-capabilities='7.0'
--debug
--default-opt-level='defaultopt'
--detect-loaded-modules='error'
--disable-add-dummy-to-minimal-toolchains
--disable-add-system-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-backup-patched-files
--disable-check-conflicts
--disable-check-contrib
--disable-check-eb-deps
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-copy-ec
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fix-deprecated-easyconfigs
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-index
--disable-ignore-locks
--disable-ignore-osdeps
--disable-ignore-test-failure
--disable-info
--disable-insecure-download
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-extensions
--disable-module-only
--disable-new-branch-github
--disable-new-pr
--disable-package
--disable-parallel-extensions-install
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-rebuild
--disable-recursive-module-unload
--disable-regtest
--disable-remove-ghost-install-dirs
--disable-rpath
--disable-sanity-check-only
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-ec
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-extensions
--disable-skip-test-cases
--disable-skip-test-step
--disable-sticky-bit
--disable-terse
--disable-try-ignore-versionsuffixes
--disable-try-update-deps
--disable-unit-testing-mode
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--download-timeout='10'
--env-for-shebang='/usr/bin/env'
--envvars-user-modules='HOME'
--extended-dry-run-ignore-errors
--filter-rpath-sanity-libs='libcuda.so,libcuda.so.1,libnvidia-ml.so,libnvidia-ml.so.1'
--fixed-installdir-naming-scheme
--force
--from-pr='20551'
--generate-devel-module
--github-user='boegel'
--hooks='/data/gent/400/vsc40023/eb_hooks.py'
--ignore-dirs='.git,.svn'
--include-easyblocks-from-pr=''
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--index-max-age='604800'
--installpath='/user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/skylake-ib'
--job-backend='Slurm'
--job-eb-cmd='eb'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/kyukon/home/gent/400/vsc40023'
--job-polling-interval='30.0'
--lib-lib64-symlink
--lib64-fallback-sanity-check
--lib64-lib-symlink
--local-var-naming-check='error'
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--minimal-build-env='CC:gcc,CXX:g++'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,ai,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--output-style='auto'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/skylake-ib/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pre-create-installdir
--prefix='/user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/skylake-ib'
--read-only-installdir
--repository='FileRepository'
--repositorypath='/user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/skylake-ib/ebfiles_repo'
--robot-paths=''
--robot='/user/gent/400/vsc40023/easybuild/easybuild-easyconfigs/easybuild/easyconfigs'
--show-progress-bar
--silence-deprecation-warnings=''
--silence-hook-trigger
--sourcepath='/data/gent/400/vsc40023/EasyBuild/sources:/apps/gent/source'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--trace
--upload-test-report
--use-ccache='False'
--use-f90cache='False'
--wait-on-lock-interval='60'
--wait-on-lock-limit='0'

System info

• core count: 9
• cpu arch: x86_64
• cpu arch name: UNKNOWN
• cpu model: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz
• cpu speed: 3700.0
• cpu vendor: Intel
• gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/8/lto-wrapper; OFFLOAD_TARGET_NAMES=nvptx-none; OFFLOAD_TARGET_DEFAULT=1; Target: x86_64-redhat-linux; Configured with: ../configure --enable-bootstrap --enable-languages=c,c++,fortran,lto --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-shared --enable-threads=posix --enable-checking=release --enable-multilib --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-gcc-major-version-only --with-linker-hash-style=gnu --enable-plugin --enable-initfini-array --with-isl --disable-libmpx --enable-offload-targets=nvptx-none --without-cuda-driver --enable-gnu-indirect-function --enable-cet --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 8.5.0 20210514 (Red Hat 8.5.0-18) (GCC) ;
• glibc version: 2.28
• hostname: node3155.skitty.os
• os name: RHEL
• os type: Linux
• os version: 8.8
• platform name: x86_64-unknown-linux
• python version: 3.6.8 (default, Feb 17 2024, 01:18:08) ; [GCC 8.5.0 20210514 (Red Hat 8.5.0-18)]
• system gcc path: /usr/bin/gcc
• system python path: /usr/bin/python
• total memory: 191519

List of loaded modules

• env/vsc/skitty
• env/slurm/skitty
• env/software/skitty
• cluster/skitty

Environment

APPTAINER_TMPDIR = /kyukon/scratch/gent/apptainer/tmp
BASH_FUNC_ml%% = () {  eval "$($LMOD_DIR/ml_cmd "$@")"
}
BASH_FUNC_module%% = () {  if [ -z "${LMOD_SH_DBG_ON+x}" ]; then
 case "$-" in 
 *v*x*)
 __lmod_sh_dbg='vx'
 ;;
 *v*)
 __lmod_sh_dbg='v'
 ;;
 *x*)
 __lmod_sh_dbg='x'
 ;;
 esac;
 fi;
 if [ -n "${__lmod_sh_dbg:-}" ]; then
 set +$__lmod_sh_dbg;
 echo "Shell debugging temporarily silenced: export LMOD_SH_DBG_ON=1 for Lmod's output" 1>&2;
 fi;
 eval "$($LMOD_CMD bash "$@")" && eval $(${LMOD_SETTARG_CMD:-:} -s sh);
 __lmod_my_status=$?;
 if [ -n "${__lmod_sh_dbg:-}" ]; then
 echo "Shell debugging restarted" 1>&2;
 set -$__lmod_sh_dbg;
 fi;
 unset __lmod_sh_dbg;
 return $__lmod_my_status
}
BASH_FUNC_which%% = () {  ( alias;
 eval ${which_declare} ) | /usr/bin/which --tty-only --read-alias --read-functions --show-tilde --show-dot $@
}
CARGO_HOME = /scratch/gent/400/vsc40023/.cargo
CCACHE_COMPILERCHECK = echo %compiler%; %compiler% -v; %compiler% -dumpmachine
CCACHE_COMPRESS = true
CCACHE_MAXFILES = 1000000
CCACHE_MAXSIZE = 0
CCACHE_NLEVELS = 4
DBUS_SESSION_BUS_ADDRESS = unix:path=/run/user/2540023/bus
DOTNET_BUNDLE_EXTRACT_BASE_DIR = /user/gent/400/vsc40023/.cache/dotnet_bundle_extract
DOTNET_ROOT = /usr/lib64/dotnet
EASYBUILD_ACCEPT_EULA_FOR = .*
EASYBUILD_BUILDPATH = /tmp/vsc40023/easybuild_build
EASYBUILD_CUDA_COMPUTE_CAPABILITIES = 7.0
EASYBUILD_DEBUG = 1
EASYBUILD_DETECT_LOADED_MODULES = error
EASYBUILD_GITHUB_USER = boegel
EASYBUILD_HOOKS = /data/gent/400/vsc40023/eb_hooks.py
EASYBUILD_JOB_BACKEND = Slurm
EASYBUILD_LOCAL_VAR_NAMING_CHECK = error
EASYBUILD_PREFIX = /user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/skylake-ib
EASYBUILD_READ_ONLY_INSTALLDIR = 1
EASYBUILD_SILENCE_HOOK_TRIGGER = 1
EASYBUILD_SOURCEPATH = /data/gent/400/vsc40023/EasyBuild/sources:/apps/gent/source
EASYBUILD_TRACE = 1
EB_GUROBI_LICENSE_FILE = /user/gent/400/vsc40023/licenses/Gurobi.lic
EB_PYTHON = python3
EB_SCRIPT_PATH = /user/gent/400/vsc40023/easybuild/easybuild-framework/eb
EB_VERBOSE = 1
F90CACHE_NLEVELS = 4
FANCYLOGGER_IGNORE_MPI4PY = 1
HISTCONTROL = ignoredups
HISTSIZE = 1000
HOME = /user/gent/400/vsc40023
HOSTNAME = node3155.skitty.os
HPCUGENT_FAMILY_CLUSTER = cluster
HPCUGENT_FAMILY_CLUSTER_VERSION = skitty
HPCUGENT_FAMILY_ENV_SLURM = env/slurm
HPCUGENT_FAMILY_ENV_SLURM_VERSION = skitty
HPCUGENT_FAMILY_ENV_SOFTWARE = env/software
HPCUGENT_FAMILY_ENV_SOFTWARE_VERSION = skitty
HPCUGENT_FAMILY_ENV_VSC = env/vsc
HPCUGENT_FAMILY_ENV_VSC_VERSION = skitty
LANG = en_US.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LIBGL_DEBUG = verbose
LMOD_ANCIENT_TIME = 604800
LMOD_CMD = /usr/share/lmod/lmod/libexec/lmod
LMOD_DIR = /usr/share/lmod/lmod/libexec
LMOD_FAMILY_CLUSTER = cluster
LMOD_FAMILY_CLUSTER_VERSION = skitty
LMOD_FAMILY_ENV_SLURM = env/slurm
LMOD_FAMILY_ENV_SLURM_VERSION = skitty
LMOD_FAMILY_ENV_SOFTWARE = env/software
LMOD_FAMILY_ENV_SOFTWARE_VERSION = skitty
LMOD_FAMILY_ENV_VSC = env/vsc
LMOD_FAMILY_ENV_VSC_VERSION = skitty
LMOD_PKG = /usr/share/lmod/lmod
LMOD_ROOT = /usr/share/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_SHORT_TIME = 86400
LMOD_SYSTEM_NAME = RHEL8-skylake
LMOD_VERSION = 8.7.4
LOADEDMODULES = env/vsc/skitty:env/slurm/skitty:env/software/skitty:cluster/skitty
LOGNAME = vsc40023
LS_COLORS = 
MAIL = /var/spool/mail/vsc40023
MANPATH = :
MODULEPATH = /user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/skylake-ib/modules/all:/etc/modulefiles/vsc
MODULESHOME = /usr/share/lmod/lmod
OMPI_MCA_btl = ^uct,ofi
OMPI_MCA_mtl = ^ofi
OMPI_MCA_pml = ucx
OMP_PROC_BIND = TRUE
PATH = /user/gent/400/vsc40023/.yarn/bin:/user/gent/400/vsc40023/.config/yarn/global/node_modules/.bin:/user/gent/400/vsc40023/easybuild/easybuild-framework:/user/gent/400/vsc40023/bin:/usr/libexec/jobcli:/opt/VirtualGL/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/user/gent/400/vsc40023/.dotnet/tools
PBS_DEFAULT = SLURM_NOT_TORQUE_PBS
PWD = /user/gent/400/vsc40023
PYTHONOPTIMIZE = 1
PYTHONPATH = /user/gent/400/vsc40023/py3/lib/python3.6/site-packages:/user/gent/400/vsc40023/py3/lib/python3.6/site-packages:/user/gent/400/vsc40023/.local/python-dateutil/lib/python3.6/site-packages/:/user/gent/400/vsc40023/.local/keyring/lib/python2.7/site-packages:/user/gent/400/vsc40023/easybuild/easybuild-framework:/user/gent/400/vsc40023/easybuild/easybuild-easyblocks:/user/gent/400/vsc40023/easybuild/easybuild-easyconfigs:
PYTHON_EGG_CACHE = /user/gent/400/vsc40023/eb_scratch/python-eggs
PYTHON_KEYRING_BACKEND = keyrings.alt.file.PlaintextKeyring
SBATCH_GET_USER_ENV = 1
SHELL = /bin/bash
SHLVL = 1
SLURM_CLUSTERS = skitty
SLURM_CONF = /etc/slurm/slurm.conf_skitty
SLURM_JOB_ID = 6857207
SSH_CLIENT = 10.141.4.56 34606 22
SSH_CONNECTION = 10.141.4.56 34606 10.141.4.56 22
SSH_TTY = /dev/pts/1
S_COLORS = auto
TERM = xterm-256color
TEST_BASH_SOURCE = /user/gent/400/vsc40023/.bashrc /user/gent/400/vsc40023/.bash_profile
USER = vsc40023
VSCPROFILELOADED = 1
VSC_ARCH_LOCAL = skylake
VSC_ARCH_SUFFIX = -ib
VSC_DATA = /data/gent/400/vsc40023
VSC_DATA_VO = /data/gent/vo/000/gvo00002
VSC_DATA_VO_GENT = /data/gent/vo/000/gvo00002
VSC_DATA_VO_USER = /data/gent/vo/000/gvo00002/vsc40023
VSC_DATA_VO_USER_GENT = /data/gent/vo/000/gvo00002/vsc40023
VSC_DEFAULT_CLUSTER_MODULE = skitty
VSC_HOME = /user/gent/400/vsc40023
VSC_INSTITUTE = gent
VSC_INSTITUTE_CLUSTER = skitty
VSC_INSTITUTE_LOCAL = gent
VSC_OS_LOCAL = RHEL8
VSC_SCRATCH = /scratch/gent/400/vsc40023
VSC_SCRATCH_ARCANINE = /arcanine/scratch/gent/400/vsc40023
VSC_SCRATCH_ARCANINE_VO = /arcanine/scratch/gent/vo/000/gvo00002
VSC_SCRATCH_ARCANINE_VO_USER = /arcanine/scratch/gent/vo/000/gvo00002/vsc40023
VSC_SCRATCH_CLUSTER = /local
VSC_SCRATCH_KYUKON = /kyukon/scratch/gent/400/vsc40023
VSC_SCRATCH_KYUKON_VO = /kyukon/scratch/gent/vo/000/gvo00002
VSC_SCRATCH_KYUKON_VO_USER = /kyukon/scratch/gent/vo/000/gvo00002/vsc40023
VSC_SCRATCH_NODE = /local
VSC_SCRATCH_SITE = /scratch/gent/400/vsc40023
VSC_SCRATCH_VO = /scratch/gent/vo/000/gvo00002
VSC_SCRATCH_VO_USER = /scratch/gent/vo/000/gvo00002/vsc40023
VSC_VO = gvo00002
VSC_VO_GENT = gvo00002
XDG_RUNTIME_DIR = /run/user/2540023
XDG_SESSION_ID = c39458
_ = /usr/bin/python3
_LMFILES_ = /etc/modulefiles/vsc/env/vsc/skitty.lua:/etc/modulefiles/vsc/env/slurm/skitty.lua:/etc/modulefiles/vsc/env/software/skitty.lua:/etc/modulefiles/vsc/cluster/skitty.lua
_ModuleTable001_ = 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
_ModuleTable002_ = cyA9ICJhY3RpdmUiLAp1c2VyTmFtZSA9ICJjbHVzdGVyL3NraXR0eSIsCndWID0gIipza2l0dHkuKnpmaW5hbCIsCn0sClsiZW52L3NsdXJtIl0gPSB7CmZuID0gIi9ldGMvbW9kdWxlZmlsZXMvdnNjL2Vudi9zbHVybS9za2l0dHkubHVhIiwKZnVsbE5hbWUgPSAiZW52L3NsdXJtL3NraXR0eSIsCmxvYWRPcmRlciA9IDIsCnByb3BUID0gewpsbW9kID0gewpzdGlja3kgPSAxLAp9LAp9LApyZWZfY291bnQgPSAxLApzdGFja0RlcHRoID0gMSwKc3RhdHVzID0gImFjdGl2ZSIsCnVzZXJOYW1lID0gImVudi9zbHVybS9za2l0dHkiLAp3ViA9ICIqc2tpdHR5Lip6ZmluYWwiLAp9LApbImVudi9zb2Z0d2FyZSJdID0gewpmbiA9ICIvZXRjL21vZHVsZWZpbGVzL3ZzYy9lbnYvc29m
_ModuleTable003_ = 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
_ModuleTable004_ = dGggPSAxLApzdGF0dXMgPSAiYWN0aXZlIiwKdXNlck5hbWUgPSAiZW52L3ZzYy9za2l0dHkiLAp3ViA9ICIqc2tpdHR5Lip6ZmluYWwiLAp9LAp9LAptcGF0aEEgPSB7CiIvdXNlci9nZW50LzQwMC92c2M0MDAyMy9lYl9hcmNhbmluZXNjcmF0Y2gvUkhFTDgvc2t5bGFrZS1pYi9tb2R1bGVzL2FsbCIsICIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsCn0sCnN5c3RlbUJhc2VNUEFUSCA9ICIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsCn0K
_ModuleTable_Sz_ = 4
__LMOD_REF_COUNT_MODULEPATH = /user/gent/400/vsc40023/eb_arcaninescratch/RHEL8/skylake-ib/modules/all:1;/etc/modulefiles/vsc:1
__LMOD_REF_COUNT_PATH = /usr/libexec/jobcli:1;/opt/VirtualGL/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/user/gent/400/vsc40023/.dotnet/tools:1
which_declare = declare -f