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EasyBuild test report for easyconfigs PR #8759

Test report for https://github.com/easybuilders/easybuild-easyconfigs/pull/8759

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS ncdf4-1.16.1-foss-2019a-R-3.6.0.eb

Time info

  • start: Tue, 13 Aug 2019 20:42:50 +0000 (UTC)
  • end: Tue, 13 Aug 2019 20:43:37 +0000 (UTC)

EasyBuild info

  • easybuild-framework version: 3.9.4.dev0
  • easybuild-easyblocks version: 3.9.4.dev0
  • command line:
eb --from-pr 8759 --upload-test-report --github-user=boegel -dfr
  • full configuration (includes defaults):
--allow-loaded-modules='EasyBuild'
--buildpath='/tmp/vsc40023/easybuild_build'
--check-ebroot-env-vars='warn'
--cleanup-builddir
--cleanup-easyconfigs
--cleanup-tmpdir
--color='auto'
--container-type='singularity'
--containerpath='/user/gent/400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/containers'
--debug
--default-opt-level='defaultopt'
--detect-loaded-modules='error'
--disable-add-dummy-to-minimal-toolchains
--disable-allow-modules-tool-mismatch
--disable-allow-use-as-root-and-accept-consequences
--disable-avail-cfgfile-constants
--disable-avail-easyconfig-constants
--disable-avail-easyconfig-licenses
--disable-avail-easyconfig-params
--disable-avail-easyconfig-templates
--disable-avail-hooks
--disable-avail-module-naming-schemes
--disable-avail-modules-tools
--disable-avail-repositories
--disable-check-conflicts
--disable-check-contrib
--disable-check-github
--disable-check-style
--disable-consider-archived-easyconfigs
--disable-container-build-image
--disable-containerize
--disable-debug-lmod
--disable-devel
--disable-dry-run
--disable-dry-run-short
--disable-dump-autopep8
--disable-dump-env-script
--disable-enforce-checksums
--disable-experimental
--disable-extended-dry-run
--disable-fetch
--disable-fixed-installdir-naming-scheme
--disable-group-writable-installdir
--disable-hidden
--disable-ignore-checksums
--disable-ignore-osdeps
--disable-info
--disable-install-github-token
--disable-install-latest-eb-release
--disable-job
--disable-last-log
--disable-list-toolchains
--disable-logtostdout
--disable-minimal-toolchains
--disable-missing-modules
--disable-module-depends-on
--disable-module-only
--disable-new-pr
--disable-package
--disable-pretend
--disable-preview-pr
--disable-quiet
--disable-read-only-installdir
--disable-rebuild
--disable-recursive-module-unload
--disable-regtest
--disable-rpath
--disable-sequential
--disable-set-default-module
--disable-set-gid-bit
--disable-show-config
--disable-show-default-configfiles
--disable-show-default-moduleclasses
--disable-show-full-config
--disable-show-system-info
--disable-skip
--disable-skip-test-cases
--disable-sticky-bit
--disable-terse
--disable-update-modules-tool-cache
--disable-use-existing-modules
--disable-verify-easyconfig-filenames
--extended-dry-run-ignore-errors
--force
--from-pr='8759'
--github-user='boegel'
--hooks='/data/gent/400/vsc40023/eb_hooks.py'
--ignore-dirs='.git,.svn'
--include-easyblocks=''
--include-module-naming-schemes=''
--include-toolchains=''
--installpath='/user/gent/400/vsc40023/eb_phanpyscratch/CO7/skylake-ib'
--job-backend='Slurm'
--job-max-jobs='0'
--job-max-walltime='24'
--job-output-dir='/kyukon/home/gent/400/vsc40023'
--job-polling-interval='30.0'
--lib64-fallback-sanity-check
--logfile-format='easybuild,easybuild-%(name)s-%(version)s-%(date)s.%(time)s.log'
--map-toolchains
--max-fail-ratio-adjust-permissions='0.5'
--module-naming-scheme='EasyBuildMNS'
--module-syntax='Lua'
--moduleclasses='base,astro,bio,cae,chem,compiler,data,debugger,devel,geo,ide,lang,lib,math,mpi,numlib,perf,quantum,phys,system,toolchain,tools,vis'
--modules-tool-version-check
--modules-tool='Lmod'
--mpi-tests
--output-format='txt'
--package-naming-scheme='EasyBuildPNS'
--package-release='1'
--package-tool-options=''
--package-tool='fpm'
--package-type='rpm'
--packagepath='/user/gent/400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/packages'
--pr-target-account='easybuilders'
--pr-target-branch='develop'
--pr-target-repo='easybuild-easyconfigs'
--pre-create-installdir
--prefix='/user/gent/400/vsc40023/eb_phanpyscratch/CO7/skylake-ib'
--repository='FileRepository'
--repositorypath='/user/gent/400/vsc40023/eb_phanpyscratch/CO7/skylake-ib/ebfiles_repo'
--robot-paths=''
--robot='/data/gent/400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages/easybuild_easyconfigs-3.9.4.dev0-py2.7.egg/easybuild/easyconfigs'
--sourcepath='/data/gent/400/vsc40023/EasyBuild/sources:/apps/gent/source:/nfsmuk/apps/gent/source/'
--strict='warn'
--subdir-modules='modules'
--subdir-software='software'
--suffix-modules-path='all'
--trace
--upload-test-report
--use-ccache='False'
--use-f90cache='False'

System info

  • core count: 1
  • cpu model: Intel(R) Xeon(R) Gold 6140 CPU @ 2.30GHz
  • cpu speed: 2300.0
  • cpu vendor: Intel
  • gcc version: Using built-in specs.; COLLECT_GCC=gcc; COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-redhat-linux/4.8.5/lto-wrapper; Target: x86_64-redhat-linux; Configured with: ../configure --prefix=/usr --mandir=/usr/share/man --infodir=/usr/share/info --with-bugurl=http://bugzilla.redhat.com/bugzilla --enable-bootstrap --enable-shared --enable-threads=posix --enable-checking=release --with-system-zlib --enable-__cxa_atexit --disable-libunwind-exceptions --enable-gnu-unique-object --enable-linker-build-id --with-linker-hash-style=gnu --enable-languages=c,c++,objc,obj-c++,java,fortran,ada,go,lto --enable-plugin --enable-initfini-array --disable-libgcj --with-isl=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/isl-install --with-cloog=/builddir/build/BUILD/gcc-4.8.5-20150702/obj-x86_64-redhat-linux/cloog-install --enable-gnu-indirect-function --with-tune=generic --with-arch_32=x86-64 --build=x86_64-redhat-linux; Thread model: posix; gcc version 4.8.5 20150623 (Red Hat 4.8.5-36) (GCC) ;
  • glibc version: 2.17
  • hostname: node3102.skitty.os
  • os name: centos linux
  • os type: Linux
  • os version: 7.6.1810
  • platform name: x86_64-unknown-linux
  • python version: 2.7.5 (default, Jun 20 2019, 20:27:34) ; [GCC 4.8.5 20150623 (Red Hat 4.8.5-36)]
  • system gcc path: /bin/gcc
  • system python path: /bin/python
  • total memory: 191873

List of loaded modules

  • cluster/skitty

Environment

BASH_FUNC_ml() = () {  eval $($LMOD_DIR/ml_cmd "$@")
}
BASH_FUNC_module() = () {  eval $($LMOD_CMD bash "$@") && eval $(${LMOD_SETTARG_CMD:-:} -s sh)
}
CARGO_HOME = /scratch/gent/400/vsc40023/.cargo
CCACHE_COMPILERCHECK = echo %compiler%; %compiler% -v; %compiler% -dumpmachine
CCACHE_COMPRESS = true
CCACHE_MAXFILES = 1000000
CCACHE_MAXSIZE = 0
CCACHE_NLEVELS = 4
EASYBUILD_BUILDPATH = /tmp/vsc40023/easybuild_build
EASYBUILD_DEBUG = 1
EASYBUILD_DETECT_LOADED_MODULES = error
EASYBUILD_GITHUB_USER = boegel
EASYBUILD_HOOKS = /data/gent/400/vsc40023/eb_hooks.py
EASYBUILD_JOB_BACKEND = Slurm
EASYBUILD_PREFIX = /user/gent/400/vsc40023/eb_phanpyscratch/CO7/skylake-ib
EASYBUILD_SOURCEPATH = /data/gent/400/vsc40023/EasyBuild/sources:/apps/gent/source:/nfsmuk/apps/gent/source/
EASYBUILD_TRACE = 1
ENVIRONMENT = BATCH
F90CACHE_NLEVELS = 4
FANCYLOGGER_IGNORE_MPI4PY = 1
HISTCONTROL = ignoredups
HISTSIZE = 1000
HOME = /user/gent/400/vsc40023
HOSTNAME = node3102.skitty.os
HPCUGENT_FAMILY_CLUSTER = cluster
HPCUGENT_FAMILY_CLUSTER_VERSION = skitty
LANG = en_US.UTF-8
LESSOPEN = ||/usr/bin/lesspipe.sh %s
LMOD_ANCIENT_TIME = 604800
LMOD_CMD = /usr/share/lmod/lmod/libexec/lmod
LMOD_DIR = /usr/share/lmod/lmod/libexec
LMOD_FAMILY_CLUSTER = cluster
LMOD_FAMILY_CLUSTER_VERSION = skitty
LMOD_PKG = /usr/share/lmod/lmod
LMOD_SETTARG_FULL_SUPPORT = no
LMOD_SHORT_TIME = 86400
LMOD_SYSTEM_NAME = CO7-skylake
LMOD_VERSION = 7.8.19
LOADEDMODULES = cluster/skitty
LOGNAME = vsc40023
MAIL = /var/spool/mail/vsc40023
MANPATH = :
MODULEPATH = /apps/gent/CO7/skylake-ib/modules/all:/etc/modulefiles/vsc
MODULESHOME = /usr/share/lmod/lmod
PATH = /data/gent/vo/000/gvo00002/JUBE/bin:/data/gent/400/vsc40023/easybuild_easy_installed/bin:/user/gent/400/vsc40023/bin:/usr/libexec/slurm/wrapper:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibutils/bin
PBS_ARRAYID = 8759
PBS_DEFAULT = SLURM_NOT_TORQUE_PBS
PBS_JOBDIR = /kyukon/home/gent/400/vsc40023
PBS_JOBID = 408659[8759]
PBS_JOBNAME = pr8759_ncdf4
PBS_NODEFILE = /tmp/mqs7B9xRvV
PBS_NODENUM = 0
PBS_NP = 1
PBS_NUM_NODES = 1
PBS_NUM_PPN = 1
PBS_O_HOME = /user/gent/400/vsc40023
PBS_O_LANG = en_US.UTF-8
PBS_O_LOGNAME = vsc40023
PBS_O_MAIL = /var/spool/mail/vsc40023
PBS_O_PATH = /data/gent/vo/000/gvo00002/JUBE/bin:/data/gent/400/vsc40023/easybuild_easy_installed/bin:/user/gent/400/vsc40023/bin:/usr/libexec/slurm/wrapper:/usr/local/bin:/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/opt/ibutils/bin
PBS_O_SHELL = /bin/bash
PBS_O_WORKDIR = /kyukon/home/gent/400/vsc40023
PBS_TASKNUM = 1
PWD = /kyukon/home/gent/400/vsc40023
PYTHONOPTIMIZE = 1
PYTHONPATH = /data/gent/vo/000/gvo00002/JUBE:/user/gent/400/vsc40023/.local/python-dateutil/lib/python2.7/site-packages/:/user/gent/400/vsc40023/.local/keyring/lib/python2.7/site-packages:/data/gent/400/vsc40023/easybuild_easy_installed/lib/python2.7/site-packages:
PYTHON_EGG_CACHE = /user/gent/400/vsc40023/eb_phanpyscratch/python-eggs
QT_GRAPHICSSYSTEM_CHECKED = 1
SHELL = /bin/bash
SHLVL = 3
SLURMD_NODENAME = node3102.skitty.os
SLURM_ARRAY_JOB_ID = 408659
SLURM_ARRAY_TASK_COUNT = 1
SLURM_ARRAY_TASK_ID = 8759
SLURM_ARRAY_TASK_MAX = 8759
SLURM_ARRAY_TASK_MIN = 8759
SLURM_ARRAY_TASK_STEP = 1
SLURM_CHECKPOINT_IMAGE_DIR = /var/spool/slurm/checkpoint
SLURM_CLUSTERS = skitty
SLURM_CLUSTER_NAME = skitty
SLURM_CONF = /etc/slurm/slurm.conf_skitty
SLURM_CPUS_ON_NODE = 1
SLURM_EXPORT_ENV = NONE
SLURM_GET_USER_ENV = 1
SLURM_GTIDS = 0
SLURM_JOBID = 408659
SLURM_JOB_ACCOUNT = gvo00002
SLURM_JOB_CPUS_PER_NODE = 1
SLURM_JOB_GID = 2540023
SLURM_JOB_ID = 408659
SLURM_JOB_NAME = pr8759_ncdf4
SLURM_JOB_NODELIST = node3102.skitty.os
SLURM_JOB_NUM_NODES = 1
SLURM_JOB_PARTITION = skitty
SLURM_JOB_QOS = normal
SLURM_JOB_UID = 2540023
SLURM_JOB_USER = vsc40023
SLURM_LOCALID = 0
SLURM_MEM_PER_NODE = 5120
SLURM_NNODES = 1
SLURM_NODEID = 0
SLURM_NODELIST = node3102.skitty.os
SLURM_NODE_ALIASES = (null)
SLURM_NPROCS = 1
SLURM_NTASKS = 1
SLURM_NTASKS_PER_NODE = 1
SLURM_PRIO_PROCESS = 0
SLURM_PROCID = 0
SLURM_SUBMIT_DIR = /kyukon/home/gent/400/vsc40023
SLURM_SUBMIT_HOST = gligar05.gastly.os
SLURM_TASKS_PER_NODE = 1
SLURM_TASK_PID = 400280
SLURM_TOPOLOGY_ADDR = node3102.skitty.os
SLURM_TOPOLOGY_ADDR_PATTERN = node
SLURM_WORKING_CLUSTER = skitty:master27.skitty.os:6817:8192
TEST_BASH_SOURCE = /user/gent/400/vsc40023/.bashrc /user/gent/400/vsc40023/.bash_profile
TMPDIR = /tmp
USER = vsc40023
VSCPROFILELOADED = 1
VSC_ARCH_LOCAL = skylake
VSC_ARCH_SUFFIX = -ib
VSC_DATA = /data/gent/400/vsc40023
VSC_DATA_VO = /data/gent/vo/000/gvo00002
VSC_DATA_VO_USER = /data/gent/vo/000/gvo00002/vsc40023
VSC_DEFAULT_CLUSTER_MODULE = skitty
VSC_HOME = /user/gent/400/vsc40023
VSC_INSTITUTE = gent
VSC_INSTITUTE_CLUSTER = skitty
VSC_INSTITUTE_LOCAL = gent
VSC_OS_LOCAL = CO7
VSC_SCRATCH = /scratch/gent/400/vsc40023
VSC_SCRATCH_CLUSTER = /local
VSC_SCRATCH_KYUKON = /kyukon/scratch/gent/400/vsc40023
VSC_SCRATCH_KYUKON_VO = /kyukon/scratch/gent/vo/000/gvo00002
VSC_SCRATCH_KYUKON_VO_USER = /kyukon/scratch/gent/vo/000/gvo00002/vsc40023
VSC_SCRATCH_NODE = /local
VSC_SCRATCH_PHANPY = /phanpy/scratch/gent/400/vsc40023
VSC_SCRATCH_PHANPY_VO = /phanpy/scratch/gent/vo/000/gvo00002
VSC_SCRATCH_PHANPY_VO_USER = /phanpy/scratch/gent/vo/000/gvo00002/vsc40023
VSC_SCRATCH_SITE = /scratch/gent/400/vsc40023
VSC_SCRATCH_VO = /scratch/gent/vo/000/gvo00002
VSC_SCRATCH_VO_USER = /scratch/gent/vo/000/gvo00002/vsc40023
VSC_VO = gvo00002
XDG_RUNTIME_DIR = /run/user/2540023
XDG_SESSION_ID = c10595
_ = /bin/python2
_LMFILES_ = /etc/modulefiles/vsc/cluster/skitty.lua
_ModuleTable001_ = 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
_ModuleTable002_ = ZHVsZWZpbGVzL3ZzYyIsfSxbInN5c3RlbUJhc2VNUEFUSCJdPSIvZXRjL21vZHVsZWZpbGVzL3ZzYyIsfQ==
_ModuleTable_Sz_ = 2
__LMOD_REF_COUNT_LOADEDMODULES = cluster/skitty:1
__LMOD_REF_COUNT_MODULEPATH = /apps/gent/CO7/skylake-ib/modules/all:1;/etc/modulefiles/vsc:1
__LMOD_REF_COUNT_PATH = /usr/libexec/slurm/wrapper:1;/usr/local/bin:1;/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1;/opt/ibutils/bin:1
__LMOD_REF_COUNT__LMFILES_ = /etc/modulefiles/vsc/cluster/skitty.lua:1
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