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October 12, 2024 03:52
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(partial) EasyBuild log for failed build of /arcanine/scratch/gent/vo/000/gvo00002/vsc40023/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/r/RDKit/RDKit-2022.03.5-foss-2021b.eb (easyblock PR(s) #3463)
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| os.environ["_ModuleTable029_"] = "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"; | |
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| os.environ["_ModuleTable034_"] = "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"; | |
| os.environ["_ModuleTable035_"] = "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"; | |
| os.environ["_ModuleTable036_"] = "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"; | |
| os.environ["_ModuleTable037_"] = "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"; | |
| os.environ["_ModuleTable038_"] = "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"; | |
| os.environ["_ModuleTable039_"] = "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"; | |
| os.environ["_ModuleTable040_"] = "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"; | |
| os.environ["_ModuleTable041_"] = "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"; | |
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| os.environ["_ModuleTable046_"] = "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"; | |
| os.environ["_ModuleTable047_"] = "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"; | |
| os.environ["_ModuleTable048_"] = "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"; | |
| os.environ["_ModuleTable049_"] = "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"; | |
| os.environ["_ModuleTable050_"] = "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"; | |
| os.environ["_ModuleTable051_"] = "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"; | |
| os.environ["_ModuleTable052_"] = "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"; | |
| os.environ["_ModuleTable053_"] = "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"; | |
| os.environ["_ModuleTable054_"] = "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"; | |
| os.environ["_ModuleTable055_"] = "LUdDQ2NvcmUtMTEuMi4wIiwKbG9hZE9yZGVyID0gNDcsCnByb3BUID0ge30sCnN0YWNrRGVwdGggPSA0LApzdGF0dXMgPSAiYWN0aXZlIiwKdXNlck5hbWUgPSAieG9yZy1tYWNyb3MvMS4xOS4zLUdDQ2NvcmUtMTEuMi4wIiwKd1YgPSAiMDAwMDAwMDAxLjAwMDAwMDAxOS4wMDAwMDAwMDMuKmdjY2NvcmUuKnpmaW5hbC0uMDAwMDAwMDExLjAwMDAwMDAwMi4qemZpbmFsIiwKfSwKemxpYiA9IHsKZm4gPSAiL2FwcHMvZ2VudC9SSEVMOC9jYXNjYWRlbGFrZS1pYi9tb2R1bGVzL2FsbC96bGliLzEuMi4xMS1HQ0Njb3JlLTExLjIuMC5sdWEiLApmdWxsTmFtZSA9ICJ6bGliLzEuMi4xMS1HQ0Njb3JlLTExLjIuMCIsCmxvYWRPcmRlciA9IDYsCnByb3BUID0ge30sCnN0YWNrRGVw"; | |
| os.environ["_ModuleTable056_"] = "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"; | |
| os.environ["_ModuleTable057_"] = "LjAiLAp3ViA9ICIwMDAwMDAwMDEuMDAwMDAwMDA1LipnY2Njb3JlLip6ZmluYWwtLjAwMDAwMDAxMS4wMDAwMDAwMDIuKnpmaW5hbCIsCn0sCn0sCm1wYXRoQSA9IHsKIi91c2VyL2dlbnQvNDAwL3ZzYzQwMDIzL2ViX3NjcmF0Y2gvUkhFTDgvY2FzY2FkZWxha2UtYW1wZXJlLWliL21vZHVsZXMvYWxsIiwgIi9hcHBzL2dlbnQvUkhFTDgvY2FzY2FkZWxha2UtaWIvbW9kdWxlcy9hbGwiLCAiL2V0Yy9tb2R1bGVmaWxlcy92c2MiLAp9LApzeXN0ZW1CYXNlTVBBVEggPSAiL2V0Yy9tb2R1bGVmaWxlcy92c2MiLAp9Cg=="; | |
| os.environ["_ModuleTable_Sz_"] = "57"; | |
| _mlstatus = True | |
| ; stderr: | |
| == 2024-10-12 03:36:10,948 modules.py:1474 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python load cairo/1.16.0-GCCcore-11.2.0' ran fine | |
| == 2024-10-12 03:36:10,950 modules.py:878 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/GLib/2.69.1-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/PCRE/8.45-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/gettext/0.21-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/pixman/0.40.0-GCCcore-11.2.0/lib'] to ['/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/GLib/2.69.1-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/PCRE/8.45-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/gettext/0.21-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/pixman/0.40.0-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/Boost/1.77.0-GCC-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/ICU/69.1-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/Qhull/2020.2-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/LibTIFF/4.3.0-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/zstd/1.5.0-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/lz4/1.9.3-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/jbigkit/2.1-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/libjpeg-turbo/2.0.6-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/Tk/8.6.11-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/X11/20210802-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/fontconfig/2.13.94-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/util-linux/2.37-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/expat/2.4.1-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/freetype/2.11.0-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/Brotli/1.0.9-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/libpng/1.6.37-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/lib', '/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.2-GCCcore-11.2.0/lib64', '/apps/gent/RHEL8/cascadelake-ib/software/GMP/6.2.1-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.11-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.1-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.5.1-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/cURL/7.78.0-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.2-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib', '/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib', '/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/OpenBLAS/0.3.18-GCC-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/OpenMPI/4.1.1-GCC-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/PMIx/4.1.0-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/libfabric/1.13.2-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/UCX/1.11.2-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/libevent/2.1.12-GCCcore-11.2.0/lib', '/user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/OpenSSL/1.1/lib', '/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.5.0-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/libpciaccess/0.16-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.9.10-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.2.5-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.14-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.37-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.11-GCCcore-11.2.0/lib', '/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib64'] | |
| == 2024-10-12 03:36:10,951 environment.py:93 INFO Environment variable LD_LIBRARY_PATH set to /apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/GLib/2.69.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/PCRE/8.45-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/gettext/0.21-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/pixman/0.40.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Boost/1.77.0-GCC-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/ICU/69.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Qhull/2020.2-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/LibTIFF/4.3.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/zstd/1.5.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/lz4/1.9.3-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/jbigkit/2.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libjpeg-turbo/2.0.6-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Tk/8.6.11-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/X11/20210802-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/fontconfig/2.13.94-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/util-linux/2.37-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.4.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/freetype/2.11.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Brotli/1.0.9-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libpng/1.6.37-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/lib:/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/GMP/6.2.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.11-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/cURL/7.78.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.2-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/PMIx/4.1.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/UCX/1.11.2-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libevent/2.1.12-GCCcore-11.2.0/lib:/user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.2.5-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.14-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.37-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.11-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib64 (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/GLib/2.69.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/PCRE/8.45-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/gettext/0.21-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/pixman/0.40.0-GCCcore-11.2.0/lib') | |
| == 2024-10-12 03:36:11,016 modules.py:628 INFO Checking whether foss/2021b exists... | |
| == 2024-10-12 03:36:11,016 modules.py:636 INFO Module foss/2021b not found in list of available modules, checking via 'module show'... | |
| == 2024-10-12 03:36:11,016 modules.py:572 DEBUG Checking whether foss/2021b exists based on output of 'module show' | |
| == 2024-10-12 03:36:11,016 modules.py:719 DEBUG Found cached result for 'module show foss/2021b' with key '('MODULEPATH=/user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/modules/all:/apps/gent/RHEL8/cascadelake-ib/modules/all:/etc/modulefiles/vsc', 'lmod', 'foss/2021b')': ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| /apps/gent/RHEL8/cascadelake-ib/modules/all/foss/2021b.lua: | |
| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| help([[ | |
| Description | |
| =========== | |
| GNU Compiler Collection (GCC) based compiler toolchain, including | |
| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. | |
| More information | |
| ================ | |
| - Homepage: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain | |
| ]]) | |
| whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including | |
| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.") | |
| whatis("Homepage: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain") | |
| whatis("URL: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain") | |
| conflict("foss") | |
| load("GCC/11.2.0") | |
| load("OpenMPI/4.1.1-GCC-11.2.0") | |
| load("FlexiBLAS/3.0.4-GCC-11.2.0") | |
| load("FFTW/3.3.10-gompi-2021b") | |
| load("ScaLAPACK/2.1.0-gompi-2021b-fb") | |
| setenv("EBROOTFOSS","/apps/gent/RHEL8/cascadelake-ib/software/foss/2021b") | |
| setenv("EBVERSIONFOSS","2021b") | |
| setenv("EBDEVELFOSS","/apps/gent/RHEL8/cascadelake-ib/software/foss/2021b/easybuild/foss-2021b-easybuild-devel") | |
| == 2024-10-12 03:36:11,016 modules.py:582 DEBUG Checking line '----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------' to determine whether foss/2021b exists... | |
| == 2024-10-12 03:36:11,016 modules.py:586 DEBUG Treating line '----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------' as whitespace, so skipping it | |
| == 2024-10-12 03:36:11,016 modules.py:582 DEBUG Checking line ' /apps/gent/RHEL8/cascadelake-ib/modules/all/foss/2021b.lua:' to determine whether foss/2021b exists... | |
| == 2024-10-12 03:36:11,016 modules.py:610 DEBUG Result for existence check of foss/2021b based on 'module show' output line ' /apps/gent/RHEL8/cascadelake-ib/modules/all/foss/2021b.lua:': True | |
| == 2024-10-12 03:36:11,016 modules.py:656 INFO Result for existence check of foss/2021b module: True | |
| == 2024-10-12 03:36:11,016 modules.py:719 DEBUG Found cached result for 'module show foss/2021b' with key '('MODULEPATH=/user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/modules/all:/apps/gent/RHEL8/cascadelake-ib/modules/all:/etc/modulefiles/vsc', 'lmod', 'foss/2021b')': ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| /apps/gent/RHEL8/cascadelake-ib/modules/all/foss/2021b.lua: | |
| ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| help([[ | |
| Description | |
| =========== | |
| GNU Compiler Collection (GCC) based compiler toolchain, including | |
| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK. | |
| More information | |
| ================ | |
| - Homepage: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain | |
| ]]) | |
| whatis("Description: GNU Compiler Collection (GCC) based compiler toolchain, including | |
| OpenMPI for MPI support, OpenBLAS (BLAS and LAPACK support), FFTW and ScaLAPACK.") | |
| whatis("Homepage: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain") | |
| whatis("URL: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#foss-toolchain") | |
| conflict("foss") | |
| load("GCC/11.2.0") | |
| load("OpenMPI/4.1.1-GCC-11.2.0") | |
| load("FlexiBLAS/3.0.4-GCC-11.2.0") | |
| load("FFTW/3.3.10-gompi-2021b") | |
| load("ScaLAPACK/2.1.0-gompi-2021b-fb") | |
| setenv("EBROOTFOSS","/apps/gent/RHEL8/cascadelake-ib/software/foss/2021b") | |
| setenv("EBVERSIONFOSS","2021b") | |
| setenv("EBDEVELFOSS","/apps/gent/RHEL8/cascadelake-ib/software/foss/2021b/easybuild/foss-2021b-easybuild-devel") | |
| == 2024-10-12 03:36:11,017 toolchain.py:750 DEBUG List of toolchain dependencies from toolchain module: ['GCC/11.2.0', 'OpenMPI/4.1.1-GCC-11.2.0', 'FlexiBLAS/3.0.4-GCC-11.2.0', 'FFTW/3.3.10-gompi-2021b', 'ScaLAPACK/2.1.0-gompi-2021b-fb'] | |
| == 2024-10-12 03:36:11,017 toolchain.py:592 DEBUG Toolchain definition for {'name': 'foss', 'version': '2021b', 'toolchain': {'name': 'system', 'version': ''}, 'versionsuffix': '', 'parsed': True, 'hidden': False, 'full_mod_name': 'foss/2021b', 'short_mod_name': 'foss/2021b', 'system': True}: {'BLACS': ['BLACS'], 'BLAS': ['FlexiBLAS'], 'COMPILER': ['GCC'], 'FFT': ['FFTW'], 'LAPACK': ['FlexiBLAS'], 'MPI': ['OpenMPI'], 'SCALAPACK': ['ScaLAPACK']} | |
| == 2024-10-12 03:36:11,017 toolchain.py:442 DEBUG get_software_version software version 2.1.0 for ScaLAPACK was found in environment | |
| == 2024-10-12 03:36:11,017 mns.py:171 DEBUG Checking whether 'GCC/11.2.0' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2024-10-12 03:36:11,018 mns.py:171 DEBUG Checking whether 'OpenMPI/4.1.1-GCC-11.2.0' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2024-10-12 03:36:11,018 mns.py:171 DEBUG Checking whether 'FlexiBLAS/3.0.4-GCC-11.2.0' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2024-10-12 03:36:11,018 mns.py:171 DEBUG Checking whether 'FFTW/3.3.10-gompi-2021b' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2024-10-12 03:36:11,018 mns.py:171 DEBUG Checking whether 'ScaLAPACK/2.1.0-gompi-2021b-fb' is a module name for software with name 'BLACS' via regex ^BLACS(/\S+)?$: False | |
| == 2024-10-12 03:36:11,018 toolchain.py:760 DEBUG Removing BLACS from list of optional toolchain elements. | |
| == 2024-10-12 03:36:11,018 toolchain.py:763 DEBUG List of toolchain elements from toolchain definition: {'ScaLAPACK', 'OpenMPI', 'GCC', 'FFTW', 'FlexiBLAS'} | |
| == 2024-10-12 03:36:11,018 mns.py:171 DEBUG Checking whether 'GCC/11.2.0' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
| == 2024-10-12 03:36:11,018 mns.py:171 DEBUG Checking whether 'OpenMPI/4.1.1-GCC-11.2.0' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
| == 2024-10-12 03:36:11,018 mns.py:171 DEBUG Checking whether 'FlexiBLAS/3.0.4-GCC-11.2.0' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
| == 2024-10-12 03:36:11,018 mns.py:171 DEBUG Checking whether 'FFTW/3.3.10-gompi-2021b' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: False | |
| == 2024-10-12 03:36:11,018 mns.py:171 DEBUG Checking whether 'ScaLAPACK/2.1.0-gompi-2021b-fb' is a module name for software with name 'ScaLAPACK' via regex ^ScaLAPACK(/\S+)?$: True | |
| == 2024-10-12 03:36:11,018 mns.py:171 DEBUG Checking whether 'GCC/11.2.0' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: False | |
| == 2024-10-12 03:36:11,018 mns.py:171 DEBUG Checking whether 'OpenMPI/4.1.1-GCC-11.2.0' is a module name for software with name 'OpenMPI' via regex ^OpenMPI(/\S+)?$: True | |
| == 2024-10-12 03:36:11,018 mns.py:171 DEBUG Checking whether 'GCC/11.2.0' is a module name for software with name 'GCC' via regex ^GCC(/\S+)?$: True | |
| == 2024-10-12 03:36:11,018 mns.py:171 DEBUG Checking whether 'GCC/11.2.0' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False | |
| == 2024-10-12 03:36:11,019 mns.py:171 DEBUG Checking whether 'OpenMPI/4.1.1-GCC-11.2.0' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False | |
| == 2024-10-12 03:36:11,019 mns.py:171 DEBUG Checking whether 'FlexiBLAS/3.0.4-GCC-11.2.0' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: False | |
| == 2024-10-12 03:36:11,019 mns.py:171 DEBUG Checking whether 'FFTW/3.3.10-gompi-2021b' is a module name for software with name 'FFTW' via regex ^FFTW(/\S+)?$: True | |
| == 2024-10-12 03:36:11,019 mns.py:171 DEBUG Checking whether 'GCC/11.2.0' is a module name for software with name 'FlexiBLAS' via regex ^FlexiBLAS(/\S+)?$: False | |
| == 2024-10-12 03:36:11,019 mns.py:171 DEBUG Checking whether 'OpenMPI/4.1.1-GCC-11.2.0' is a module name for software with name 'FlexiBLAS' via regex ^FlexiBLAS(/\S+)?$: False | |
| == 2024-10-12 03:36:11,019 mns.py:171 DEBUG Checking whether 'FlexiBLAS/3.0.4-GCC-11.2.0' is a module name for software with name 'FlexiBLAS' via regex ^FlexiBLAS(/\S+)?$: True | |
| == 2024-10-12 03:36:11,019 toolchain.py:766 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2024-10-12 03:36:11,021 compiler.py:363 INFO _set_optimal_architecture: using mavx2 as optarch for x86_64/Intel. | |
| == 2024-10-12 03:36:11,022 toolchain.py:442 DEBUG get_software_version software version 4.1.1 for OpenMPI was found in environment | |
| == 2024-10-12 03:36:11,023 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/OpenMPI/4.1.1-GCC-11.2.0 for OpenMPI was found in environment | |
| == 2024-10-12 03:36:11,027 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0 for FlexiBLAS was found in environment | |
| == 2024-10-12 03:36:11,030 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0 for FlexiBLAS was found in environment | |
| == 2024-10-12 03:36:11,033 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0 for FlexiBLAS was found in environment | |
| == 2024-10-12 03:36:11,034 toolchain.py:442 DEBUG get_software_version software version 2.1.0 for ScaLAPACK was found in environment | |
| == 2024-10-12 03:36:11,036 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb for ScaLAPACK was found in environment | |
| == 2024-10-12 03:36:11,037 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb for ScaLAPACK was found in environment | |
| == 2024-10-12 03:36:11,038 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb/include was not found | |
| == 2024-10-12 03:36:11,038 toolchain.py:442 DEBUG get_software_version software version 3.3.10 for FFTW was found in environment | |
| == 2024-10-12 03:36:11,039 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b for FFTW was found in environment | |
| == 2024-10-12 03:36:11,040 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b for FFTW was found in environment | |
| == 2024-10-12 03:36:11,041 toolchain.py:871 DEBUG prepare: set additional variables onlymod=False | |
| == 2024-10-12 03:36:11,041 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/CMake/3.22.1-GCCcore-11.2.0 for CMake was found in environment | |
| == 2024-10-12 03:36:11,041 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/Eigen/3.4.0-GCCcore-11.2.0 for Eigen was found in environment | |
| == 2024-10-12 03:36:11,041 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0 for pkgconf was found in environment | |
| == 2024-10-12 03:36:11,041 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0 for Python was found in environment | |
| == 2024-10-12 03:36:11,042 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2021.10-foss-2021b for SciPy-bundle was found in environment | |
| == 2024-10-12 03:36:11,042 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0 for SQLite was found in environment | |
| == 2024-10-12 03:36:11,042 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/matplotlib/3.4.3-foss-2021b for matplotlib was found in environment | |
| == 2024-10-12 03:36:11,042 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/Pillow/8.3.2-GCCcore-11.2.0 for Pillow was found in environment | |
| == 2024-10-12 03:36:11,042 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0 for Boost.Python was found in environment | |
| == 2024-10-12 03:36:11,042 toolchain.py:432 DEBUG get_software_root software root /apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0 for cairo was found in environment | |
| == 2024-10-12 03:36:11,042 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/CMake/3.22.1-GCCcore-11.2.0/include was not found | |
| == 2024-10-12 03:36:11,042 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/CMake/3.22.1-GCCcore-11.2.0/lib64 was not found | |
| == 2024-10-12 03:36:11,042 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/CMake/3.22.1-GCCcore-11.2.0/lib was not found | |
| == 2024-10-12 03:36:11,044 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/Eigen/3.4.0-GCCcore-11.2.0/lib64 was not found | |
| == 2024-10-12 03:36:11,044 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/Eigen/3.4.0-GCCcore-11.2.0/lib was not found | |
| == 2024-10-12 03:36:11,047 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2021.10-foss-2021b/include was not found | |
| == 2024-10-12 03:36:11,050 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/matplotlib/3.4.3-foss-2021b/include was not found | |
| == 2024-10-12 03:36:11,051 variables.py:203 WARNING flags_for_subdirs: directory /apps/gent/RHEL8/cascadelake-ib/software/Pillow/8.3.2-GCCcore-11.2.0/include was not found | |
| == 2024-10-12 03:36:11,058 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_INC_DIR to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas | |
| == 2024-10-12 03:36:11,058 environment.py:93 INFO Environment variable BLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined) | |
| == 2024-10-12 03:36:11,058 environment.py:93 INFO Environment variable EBVARBLAS_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined) | |
| == 2024-10-12 03:36:11,058 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas | |
| == 2024-10-12 03:36:11,058 environment.py:93 INFO Environment variable BLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined) | |
| == 2024-10-12 03:36:11,059 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined) | |
| == 2024-10-12 03:36:11,059 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib | |
| == 2024-10-12 03:36:11,059 environment.py:93 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib (previously undefined) | |
| == 2024-10-12 03:36:11,059 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib (previously undefined) | |
| == 2024-10-12 03:36:11,059 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_SHARED_LIBS to libflexiblas.so,libgfortran.so,libpthread.so | |
| == 2024-10-12 03:36:11,059 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-10-12 03:36:11,059 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-10-12 03:36:11,059 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libflexiblas.a,libgfortran.a,libpthread.a | |
| == 2024-10-12 03:36:11,059 environment.py:93 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-10-12 03:36:11,059 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-10-12 03:36:11,059 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_SHARED_LIBS to libflexiblas.so,libgfortran.so | |
| == 2024-10-12 03:36:11,059 environment.py:93 INFO Environment variable BLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-10-12 03:36:11,059 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-10-12 03:36:11,059 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libflexiblas.a,libgfortran.a | |
| == 2024-10-12 03:36:11,059 environment.py:93 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-10-12 03:36:11,060 environment.py:93 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-10-12 03:36:11,060 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_LIB_DIR to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib | |
| == 2024-10-12 03:36:11,060 environment.py:93 INFO Environment variable BLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib (previously undefined) | |
| == 2024-10-12 03:36:11,060 environment.py:93 INFO Environment variable EBVARBLAS_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib (previously undefined) | |
| == 2024-10-12 03:36:11,060 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_MT_SHARED_LIBS to libflexiblas.so,libgfortran.so,libpthread.so | |
| == 2024-10-12 03:36:11,060 environment.py:93 INFO Environment variable BLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-10-12 03:36:11,060 environment.py:93 INFO Environment variable EBVARBLAS_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-10-12 03:36:11,060 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libflexiblas.a,libgfortran.a,libpthread.a | |
| == 2024-10-12 03:36:11,060 environment.py:93 INFO Environment variable BLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-10-12 03:36:11,060 environment.py:93 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-10-12 03:36:11,060 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_SHARED_LIBS to libflexiblas.so,libgfortran.so | |
| == 2024-10-12 03:36:11,060 environment.py:93 INFO Environment variable BLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-10-12 03:36:11,060 environment.py:93 INFO Environment variable EBVARBLAS_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-10-12 03:36:11,060 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable BLAS_STATIC_LIBS to libflexiblas.a,libgfortran.a | |
| == 2024-10-12 03:36:11,060 environment.py:93 INFO Environment variable BLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-10-12 03:36:11,060 environment.py:93 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-10-12 03:36:11,060 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CC to gcc | |
| == 2024-10-12 03:36:11,061 environment.py:93 INFO Environment variable CC set to gcc (previously undefined) | |
| == 2024-10-12 03:36:11,061 environment.py:93 INFO Environment variable EBVARCC set to gcc (previously undefined) | |
| == 2024-10-12 03:36:11,061 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 | |
| == 2024-10-12 03:36:11,061 environment.py:93 INFO Environment variable CFLAGS set to -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 (previously undefined) | |
| == 2024-10-12 03:36:11,061 environment.py:93 INFO Environment variable EBVARCFLAGS set to -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 (previously undefined) | |
| == 2024-10-12 03:36:11,061 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/Eigen/3.4.0-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas | |
| == 2024-10-12 03:36:11,061 environment.py:93 INFO Environment variable CPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/Eigen/3.4.0-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined) | |
| == 2024-10-12 03:36:11,061 environment.py:93 INFO Environment variable EBVARCPPFLAGS set to -I/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/Eigen/3.4.0-GCCcore-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include -I/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined) | |
| == 2024-10-12 03:36:11,061 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CXX to g++ | |
| == 2024-10-12 03:36:11,061 environment.py:93 INFO Environment variable CXX set to g++ (previously undefined) | |
| == 2024-10-12 03:36:11,061 environment.py:93 INFO Environment variable EBVARCXX set to g++ (previously undefined) | |
| == 2024-10-12 03:36:11,061 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 | |
| == 2024-10-12 03:36:11,061 environment.py:93 INFO Environment variable CXXFLAGS set to -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 (previously undefined) | |
| == 2024-10-12 03:36:11,061 environment.py:93 INFO Environment variable EBVARCXXFLAGS set to -O2 -ftree-vectorize -mavx2 -fno-math-errno -std=c++11 (previously undefined) | |
| == 2024-10-12 03:36:11,061 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F77 to gfortran | |
| == 2024-10-12 03:36:11,062 environment.py:93 INFO Environment variable F77 set to gfortran (previously undefined) | |
| == 2024-10-12 03:36:11,062 environment.py:93 INFO Environment variable EBVARF77 set to gfortran (previously undefined) | |
| == 2024-10-12 03:36:11,062 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F90 to gfortran | |
| == 2024-10-12 03:36:11,062 environment.py:93 INFO Environment variable F90 set to gfortran (previously undefined) | |
| == 2024-10-12 03:36:11,062 environment.py:93 INFO Environment variable EBVARF90 set to gfortran (previously undefined) | |
| == 2024-10-12 03:36:11,062 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -ftree-vectorize -mavx2 -fno-math-errno | |
| == 2024-10-12 03:36:11,062 environment.py:93 INFO Environment variable F90FLAGS set to -O2 -ftree-vectorize -mavx2 -fno-math-errno (previously undefined) | |
| == 2024-10-12 03:36:11,062 environment.py:93 INFO Environment variable EBVARF90FLAGS set to -O2 -ftree-vectorize -mavx2 -fno-math-errno (previously undefined) | |
| == 2024-10-12 03:36:11,062 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FC to gfortran | |
| == 2024-10-12 03:36:11,062 environment.py:93 INFO Environment variable FC set to gfortran (previously undefined) | |
| == 2024-10-12 03:36:11,062 environment.py:93 INFO Environment variable EBVARFC set to gfortran (previously undefined) | |
| == 2024-10-12 03:36:11,062 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -ftree-vectorize -mavx2 -fno-math-errno | |
| == 2024-10-12 03:36:11,062 environment.py:93 INFO Environment variable FCFLAGS set to -O2 -ftree-vectorize -mavx2 -fno-math-errno (previously undefined) | |
| == 2024-10-12 03:36:11,062 environment.py:93 INFO Environment variable EBVARFCFLAGS set to -O2 -ftree-vectorize -mavx2 -fno-math-errno (previously undefined) | |
| == 2024-10-12 03:36:11,062 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -ftree-vectorize -mavx2 -fno-math-errno | |
| == 2024-10-12 03:36:11,062 environment.py:93 INFO Environment variable FFLAGS set to -O2 -ftree-vectorize -mavx2 -fno-math-errno (previously undefined) | |
| == 2024-10-12 03:36:11,062 environment.py:93 INFO Environment variable EBVARFFLAGS set to -O2 -ftree-vectorize -mavx2 -fno-math-errno (previously undefined) | |
| == 2024-10-12 03:36:11,063 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_INC_DIR to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/include | |
| == 2024-10-12 03:36:11,063 environment.py:93 INFO Environment variable FFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/include (previously undefined) | |
| == 2024-10-12 03:36:11,063 environment.py:93 INFO Environment variable EBVARFFTW_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/include (previously undefined) | |
| == 2024-10-12 03:36:11,063 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_LIB_DIR to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib | |
| == 2024-10-12 03:36:11,063 environment.py:93 INFO Environment variable FFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib (previously undefined) | |
| == 2024-10-12 03:36:11,063 environment.py:93 INFO Environment variable EBVARFFTW_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib (previously undefined) | |
| == 2024-10-12 03:36:11,063 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_SHARED_LIBS to libfftw3.so | |
| == 2024-10-12 03:36:11,063 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS set to libfftw3.so (previously undefined) | |
| == 2024-10-12 03:36:11,063 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS set to libfftw3.so (previously undefined) | |
| == 2024-10-12 03:36:11,063 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_SHARED_LIBS_MT to libfftw3.so,libpthread.so | |
| == 2024-10-12 03:36:11,063 environment.py:93 INFO Environment variable FFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) | |
| == 2024-10-12 03:36:11,063 environment.py:93 INFO Environment variable EBVARFFTW_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) | |
| == 2024-10-12 03:36:11,063 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3.a | |
| == 2024-10-12 03:36:11,063 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2024-10-12 03:36:11,063 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2024-10-12 03:36:11,063 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to libfftw3.a,libpthread.a | |
| == 2024-10-12 03:36:11,064 environment.py:93 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2024-10-12 03:36:11,064 environment.py:93 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2024-10-12 03:36:11,064 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/include | |
| == 2024-10-12 03:36:11,064 environment.py:93 INFO Environment variable FFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/include (previously undefined) | |
| == 2024-10-12 03:36:11,064 environment.py:93 INFO Environment variable EBVARFFT_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/include (previously undefined) | |
| == 2024-10-12 03:36:11,064 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib | |
| == 2024-10-12 03:36:11,064 environment.py:93 INFO Environment variable FFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib (previously undefined) | |
| == 2024-10-12 03:36:11,064 environment.py:93 INFO Environment variable EBVARFFT_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib (previously undefined) | |
| == 2024-10-12 03:36:11,064 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_SHARED_LIBS to libfftw3.so | |
| == 2024-10-12 03:36:11,064 environment.py:93 INFO Environment variable FFT_SHARED_LIBS set to libfftw3.so (previously undefined) | |
| == 2024-10-12 03:36:11,064 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS set to libfftw3.so (previously undefined) | |
| == 2024-10-12 03:36:11,064 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_SHARED_LIBS_MT to libfftw3.so,libpthread.so | |
| == 2024-10-12 03:36:11,064 environment.py:93 INFO Environment variable FFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) | |
| == 2024-10-12 03:36:11,064 environment.py:93 INFO Environment variable EBVARFFT_SHARED_LIBS_MT set to libfftw3.so,libpthread.so (previously undefined) | |
| == 2024-10-12 03:36:11,064 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3.a | |
| == 2024-10-12 03:36:11,064 environment.py:93 INFO Environment variable FFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2024-10-12 03:36:11,065 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3.a (previously undefined) | |
| == 2024-10-12 03:36:11,065 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libfftw3.a,libpthread.a | |
| == 2024-10-12 03:36:11,065 environment.py:93 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2024-10-12 03:36:11,065 environment.py:93 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3.a,libpthread.a (previously undefined) | |
| == 2024-10-12 03:36:11,065 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable FLIBS to -lgfortran | |
| == 2024-10-12 03:36:11,065 environment.py:93 INFO Environment variable FLIBS set to -lgfortran (previously undefined) | |
| == 2024-10-12 03:36:11,065 environment.py:93 INFO Environment variable EBVARFLIBS set to -lgfortran (previously undefined) | |
| == 2024-10-12 03:36:11,065 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas | |
| == 2024-10-12 03:36:11,065 environment.py:93 INFO Environment variable LAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined) | |
| == 2024-10-12 03:36:11,065 environment.py:93 INFO Environment variable EBVARLAPACK_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas (previously undefined) | |
| == 2024-10-12 03:36:11,065 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib | |
| == 2024-10-12 03:36:11,065 environment.py:93 INFO Environment variable LAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib (previously undefined) | |
| == 2024-10-12 03:36:11,065 environment.py:93 INFO Environment variable EBVARLAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib (previously undefined) | |
| == 2024-10-12 03:36:11,065 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_MT_SHARED_LIBS to libflexiblas.so,libgfortran.so,libpthread.so | |
| == 2024-10-12 03:36:11,065 environment.py:93 INFO Environment variable LAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-10-12 03:36:11,065 environment.py:93 INFO Environment variable EBVARLAPACK_MT_SHARED_LIBS set to libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-10-12 03:36:11,066 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libflexiblas.a,libgfortran.a,libpthread.a | |
| == 2024-10-12 03:36:11,066 environment.py:93 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-10-12 03:36:11,066 environment.py:93 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-10-12 03:36:11,066 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_SHARED_LIBS to libflexiblas.so,libgfortran.so | |
| == 2024-10-12 03:36:11,066 environment.py:93 INFO Environment variable LAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-10-12 03:36:11,066 environment.py:93 INFO Environment variable EBVARLAPACK_SHARED_LIBS set to libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-10-12 03:36:11,066 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libflexiblas.a,libgfortran.a | |
| == 2024-10-12 03:36:11,066 environment.py:93 INFO Environment variable LAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-10-12 03:36:11,066 environment.py:93 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-10-12 03:36:11,066 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Pillow/8.3.2-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Pillow/8.3.2-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/matplotlib/3.4.3-foss-2021b/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/matplotlib/3.4.3-foss-2021b/lib -L/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2021.10-foss-2021b/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2021.10-foss-2021b/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib -L/apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib | |
| == 2024-10-12 03:36:11,066 environment.py:93 INFO Environment variable LDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Pillow/8.3.2-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Pillow/8.3.2-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/matplotlib/3.4.3-foss-2021b/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/matplotlib/3.4.3-foss-2021b/lib -L/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2021.10-foss-2021b/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2021.10-foss-2021b/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib -L/apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib (previously undefined) | |
| == 2024-10-12 03:36:11,066 environment.py:93 INFO Environment variable EBVARLDFLAGS set to -L/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Pillow/8.3.2-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Pillow/8.3.2-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/matplotlib/3.4.3-foss-2021b/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/matplotlib/3.4.3-foss-2021b/lib -L/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2021.10-foss-2021b/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2021.10-foss-2021b/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib -L/apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib (previously undefined) | |
| == 2024-10-12 03:36:11,066 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBBLAS to -lflexiblas -lgfortran | |
| == 2024-10-12 03:36:11,066 environment.py:93 INFO Environment variable LIBBLAS set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-10-12 03:36:11,066 environment.py:93 INFO Environment variable EBVARLIBBLAS set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-10-12 03:36:11,066 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -lflexiblas -lgfortran -lpthread | |
| == 2024-10-12 03:36:11,067 environment.py:93 INFO Environment variable LIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-10-12 03:36:11,067 environment.py:93 INFO Environment variable EBVARLIBBLAS_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-10-12 03:36:11,067 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBFFT to -lfftw3 | |
| == 2024-10-12 03:36:11,067 environment.py:93 INFO Environment variable LIBFFT set to -lfftw3 (previously undefined) | |
| == 2024-10-12 03:36:11,067 environment.py:93 INFO Environment variable EBVARLIBFFT set to -lfftw3 (previously undefined) | |
| == 2024-10-12 03:36:11,067 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -lfftw3 -lpthread | |
| == 2024-10-12 03:36:11,067 environment.py:93 INFO Environment variable LIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2024-10-12 03:36:11,067 environment.py:93 INFO Environment variable EBVARLIBFFT_MT set to -lfftw3 -lpthread (previously undefined) | |
| == 2024-10-12 03:36:11,067 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -lflexiblas -lgfortran | |
| == 2024-10-12 03:36:11,067 environment.py:93 INFO Environment variable LIBLAPACK set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-10-12 03:36:11,067 environment.py:93 INFO Environment variable EBVARLIBLAPACK set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-10-12 03:36:11,067 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -lflexiblas -lgfortran -lpthread | |
| == 2024-10-12 03:36:11,067 environment.py:93 INFO Environment variable LIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-10-12 03:36:11,067 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-10-12 03:36:11,067 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -lflexiblas -lgfortran -lpthread | |
| == 2024-10-12 03:36:11,067 environment.py:93 INFO Environment variable LIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-10-12 03:36:11,068 environment.py:93 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-10-12 03:36:11,068 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -lflexiblas -lgfortran | |
| == 2024-10-12 03:36:11,068 environment.py:93 INFO Environment variable LIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-10-12 03:36:11,068 environment.py:93 INFO Environment variable EBVARLIBLAPACK_ONLY set to -lflexiblas -lgfortran (previously undefined) | |
| == 2024-10-12 03:36:11,068 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBS to -lm -lpthread | |
| == 2024-10-12 03:36:11,068 environment.py:93 INFO Environment variable LIBS set to -lm -lpthread (previously undefined) | |
| == 2024-10-12 03:36:11,068 environment.py:93 INFO Environment variable EBVARLIBS set to -lm -lpthread (previously undefined) | |
| == 2024-10-12 03:36:11,068 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -lscalapack -lflexiblas -lgfortran | |
| == 2024-10-12 03:36:11,068 environment.py:93 INFO Environment variable LIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) | |
| == 2024-10-12 03:36:11,068 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK set to -lscalapack -lflexiblas -lgfortran (previously undefined) | |
| == 2024-10-12 03:36:11,068 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -lscalapack -lflexiblas -lgfortran -lpthread | |
| == 2024-10-12 03:36:11,068 environment.py:93 INFO Environment variable LIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-10-12 03:36:11,068 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT set to -lscalapack -lflexiblas -lgfortran -lpthread (previously undefined) | |
| == 2024-10-12 03:36:11,068 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -lscalapack -lgfortran | |
| == 2024-10-12 03:36:11,068 environment.py:93 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2024-10-12 03:36:11,068 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2024-10-12 03:36:11,069 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -lscalapack -lgfortran | |
| == 2024-10-12 03:36:11,069 environment.py:93 INFO Environment variable LIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2024-10-12 03:36:11,069 environment.py:93 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -lscalapack -lgfortran (previously undefined) | |
| == 2024-10-12 03:36:11,069 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPICC to mpicc | |
| == 2024-10-12 03:36:11,069 environment.py:93 INFO Environment variable MPICC set to mpicc (previously undefined) | |
| == 2024-10-12 03:36:11,069 environment.py:93 INFO Environment variable EBVARMPICC set to mpicc (previously undefined) | |
| == 2024-10-12 03:36:11,069 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPICXX to mpicxx | |
| == 2024-10-12 03:36:11,069 environment.py:93 INFO Environment variable MPICXX set to mpicxx (previously undefined) | |
| == 2024-10-12 03:36:11,069 environment.py:93 INFO Environment variable EBVARMPICXX set to mpicxx (previously undefined) | |
| == 2024-10-12 03:36:11,069 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPIF77 to mpifort | |
| == 2024-10-12 03:36:11,069 environment.py:93 INFO Environment variable MPIF77 set to mpifort (previously undefined) | |
| == 2024-10-12 03:36:11,069 environment.py:93 INFO Environment variable EBVARMPIF77 set to mpifort (previously undefined) | |
| == 2024-10-12 03:36:11,069 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPIF90 to mpifort | |
| == 2024-10-12 03:36:11,069 environment.py:93 INFO Environment variable MPIF90 set to mpifort (previously undefined) | |
| == 2024-10-12 03:36:11,069 environment.py:93 INFO Environment variable EBVARMPIF90 set to mpifort (previously undefined) | |
| == 2024-10-12 03:36:11,069 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPIFC to mpifort | |
| == 2024-10-12 03:36:11,069 environment.py:93 INFO Environment variable MPIFC set to mpifort (previously undefined) | |
| == 2024-10-12 03:36:11,070 environment.py:93 INFO Environment variable EBVARMPIFC set to mpifort (previously undefined) | |
| == 2024-10-12 03:36:11,070 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /apps/gent/RHEL8/cascadelake-ib/software/OpenMPI/4.1.1-GCC-11.2.0/include | |
| == 2024-10-12 03:36:11,070 environment.py:93 INFO Environment variable MPI_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/OpenMPI/4.1.1-GCC-11.2.0/include (previously undefined) | |
| == 2024-10-12 03:36:11,070 environment.py:93 INFO Environment variable EBVARMPI_INC_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/OpenMPI/4.1.1-GCC-11.2.0/include (previously undefined) | |
| == 2024-10-12 03:36:11,070 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /apps/gent/RHEL8/cascadelake-ib/software/OpenMPI/4.1.1-GCC-11.2.0/lib64 | |
| == 2024-10-12 03:36:11,070 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/OpenMPI/4.1.1-GCC-11.2.0/lib64 (previously undefined) | |
| == 2024-10-12 03:36:11,070 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/OpenMPI/4.1.1-GCC-11.2.0/lib64 (previously undefined) | |
| == 2024-10-12 03:36:11,070 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /apps/gent/RHEL8/cascadelake-ib/software/OpenMPI/4.1.1-GCC-11.2.0/lib64/libmpi.so | |
| == 2024-10-12 03:36:11,070 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /apps/gent/RHEL8/cascadelake-ib/software/OpenMPI/4.1.1-GCC-11.2.0/lib64/libmpi.so (previously undefined) | |
| == 2024-10-12 03:36:11,070 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /apps/gent/RHEL8/cascadelake-ib/software/OpenMPI/4.1.1-GCC-11.2.0/lib64/libmpi.so (previously undefined) | |
| == 2024-10-12 03:36:11,070 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to | |
| == 2024-10-12 03:36:11,070 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) | |
| == 2024-10-12 03:36:11,070 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) | |
| == 2024-10-12 03:36:11,070 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_CC to gcc | |
| == 2024-10-12 03:36:11,070 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) | |
| == 2024-10-12 03:36:11,070 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) | |
| == 2024-10-12 03:36:11,071 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_CXX to g++ | |
| == 2024-10-12 03:36:11,071 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) | |
| == 2024-10-12 03:36:11,071 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) | |
| == 2024-10-12 03:36:11,071 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_F77 to gfortran | |
| == 2024-10-12 03:36:11,071 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) | |
| == 2024-10-12 03:36:11,071 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) | |
| == 2024-10-12 03:36:11,071 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_F90 to gfortran | |
| == 2024-10-12 03:36:11,071 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) | |
| == 2024-10-12 03:36:11,071 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) | |
| == 2024-10-12 03:36:11,071 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_FC to gfortran | |
| == 2024-10-12 03:36:11,071 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) | |
| == 2024-10-12 03:36:11,071 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) | |
| == 2024-10-12 03:36:11,071 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -ftree-vectorize -mavx2 | |
| == 2024-10-12 03:36:11,071 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -mavx2 (previously undefined) | |
| == 2024-10-12 03:36:11,071 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -mavx2 (previously undefined) | |
| == 2024-10-12 03:36:11,071 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -fno-math-errno | |
| == 2024-10-12 03:36:11,072 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2024-10-12 03:36:11,072 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2024-10-12 03:36:11,072 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to | |
| == 2024-10-12 03:36:11,072 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) | |
| == 2024-10-12 03:36:11,072 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) | |
| == 2024-10-12 03:36:11,072 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib | |
| == 2024-10-12 03:36:11,072 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib (previously undefined) | |
| == 2024-10-12 03:36:11,072 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib (previously undefined) | |
| == 2024-10-12 03:36:11,072 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_SHARED_LIBS to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so | |
| == 2024-10-12 03:36:11,072 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-10-12 03:36:11,072 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-10-12 03:36:11,072 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a | |
| == 2024-10-12 03:36:11,072 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-10-12 03:36:11,072 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-10-12 03:36:11,072 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_SHARED_LIBS to libscalapack.so,libflexiblas.so,libgfortran.so | |
| == 2024-10-12 03:36:11,072 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-10-12 03:36:11,073 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-10-12 03:36:11,073 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libflexiblas.a,libgfortran.a | |
| == 2024-10-12 03:36:11,073 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-10-12 03:36:11,073 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-10-12 03:36:11,073 toolchain.py:442 DEBUG get_software_version software version 4.1.1 for OpenMPI was found in environment | |
| == 2024-10-12 03:36:11,073 easyblock.py:2146 INFO Using /tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/rdkit-Release_2022_03_5/ as start dir | |
| == 2024-10-12 03:36:11,073 easyblock.py:2149 DEBUG Changed to real build directory /tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/rdkit-Release_2022_03_5/ (start_dir) | |
| == 2024-10-12 03:36:11,073 hooks.py:205 INFO Found post_prepare_hook hook | |
| == 2024-10-12 03:36:11,073 hooks.py:239 INFO Running 'post_prepare_hook' hook function (args: [<easybuild.easyblocks.generic.cmakemake.CMakeMake object at 0x14cb1cc54128>], keyword args: {})... | |
| == 2024-10-12 03:36:11,073 build_log.py:267 INFO ... (took 47 secs) | |
| == 2024-10-12 03:36:11,078 easyblock.py:3954 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True, sanity_check_only: False, skip_extensions: False, skip_test_step: False, skip_sanity_check: False) | |
| == 2024-10-12 03:36:11,078 build_log.py:267 INFO configuring... | |
| == 2024-10-12 03:36:11,083 easyblock.py:3962 INFO Starting configure step | |
| == 2024-10-12 03:36:11,083 easyconfig.py:1705 INFO Generating template values... | |
| == 2024-10-12 03:36:11,083 templates.py:206 DEBUG config: RDKit EasyConfig @ /arcanine/scratch/gent/vo/000/gvo00002/vsc40023/easybuild/easybuild-easyconfigs/easybuild/easyconfigs/r/RDKit/RDKit-2022.03.5-foss-2021b.eb | |
| == 2024-10-12 03:36:11,083 templates.py:239 DEBUG version found in easyconfig is 2022.03.5 | |
| == 2024-10-12 03:36:11,083 templates.py:341 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2024-10-12 03:36:11,083 templates.py:341 DEBUG name: github_account, config: %(namelower)s | |
| == 2024-10-12 03:36:11,083 templates.py:341 DEBUG name: name, config: RDKit | |
| == 2024-10-12 03:36:11,084 templates.py:341 DEBUG name: parallel, config: 8 | |
| == 2024-10-12 03:36:11,084 templates.py:341 DEBUG name: version, config: 2022.03.5 | |
| == 2024-10-12 03:36:11,084 templates.py:341 DEBUG name: versionsuffix, config: | |
| == 2024-10-12 03:36:11,084 templates.py:341 DEBUG name: versionprefix, config: | |
| == 2024-10-12 03:36:11,084 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-10-12 03:36:11,084 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-10-12 03:36:11,084 easyconfig.py:1724 INFO Template values: arch='x86_64', bitbucket_account='rdkit', builddir='/tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_cc_space_sep_no_period='70', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='rdkit', installdir='/user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/RDKit/2022.03.5-foss-2021b', module_name='RDKit/2022.03.5-foss-2021b', mpi_cmd_prefix='mpirun -n 1', name='RDKit', nameletter='R', nameletterlower='r', namelower='rdkit', parallel='8', pymajver='3', pyminver='9', pyshortver='3.9', pyver='3.9.6', software_commit='', start_dir='/tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/rdkit-Release_2022_03_5/', sysroot='', toolchain_name='foss', toolchain_version='2021b', version='2022.03.5', version_major='2022', version_major_minor='2022.03', version_minor='03', versionprefix='', versionsuffix='' | |
| == 2024-10-12 03:36:11,084 hooks.py:205 INFO Found pre_configure_hook hook | |
| == 2024-10-12 03:36:11,084 hooks.py:239 INFO Running 'pre_configure_hook' hook function (args: [<easybuild.easyblocks.generic.cmakemake.CMakeMake object at 0x14cb1cc54128>], keyword args: {})... | |
| == 2024-10-12 03:36:11,084 easyblock.py:3970 INFO Running method configure_step part of step configure | |
| == 2024-10-12 03:36:11,084 environment.py:93 INFO Environment variable CMAKE_INCLUDE_PATH set to /apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/include/flexiblas:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/include:/apps/gent/RHEL8/cascadelake-ib/software/Eigen/3.4.0-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/GLib/2.69.1-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/PCRE/8.45-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/gettext/0.21-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/pixman/0.40.0-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/Boost/1.77.0-GCC-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/ICU/69.1-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/Qhull/2020.2-GCCcore-11.2.0/qhull/include:/apps/gent/RHEL8/cascadelake-ib/software/Qhull/2020.2-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/LibTIFF/4.3.0-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/zstd/1.5.0-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/lz4/1.9.3-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/jbigkit/2.1-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/libjpeg-turbo/2.0.6-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/Tk/8.6.11-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/X11/20210802-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/fontconfig/2.13.94-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/util-linux/2.37-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.4.1-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/freetype/2.11.0-GCCcore-11.2.0/include/freetype2:/apps/gent/RHEL8/cascadelake-ib/software/Brotli/1.0.9-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/libpng/1.6.37-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/include:/apps/gent/RHEL8/cascadelake-ib/software/pybind11/2.7.1-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.2-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/GMP/6.2.1-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.11-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.1-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.5.1-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/cURL/7.78.0-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.2-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/OpenBLAS/0.3.18-GCC-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/OpenMPI/4.1.1-GCC-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/PMIx/4.1.0-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/libfabric/1.13.2-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/UCX/1.11.2-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/libevent/2.1.12-GCCcore-11.2.0/include:/user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/OpenSSL/1.1/include:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.5.0-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/libpciaccess/0.16-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.9.10-GCCcore-11.2.0/include/libxml2:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.9.10-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.2.5-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.14-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.37-GCCcore-11.2.0/include:/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.11-GCCcore-11.2.0/include (previously undefined) | |
| == 2024-10-12 03:36:11,085 environment.py:93 INFO Environment variable CMAKE_LIBRARY_PATH set to /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib64:/apps/gent/RHEL8/cascadelake-ib/software/ScaLAPACK/2.1.0-gompi-2021b-fb/lib:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib64:/apps/gent/RHEL8/cascadelake-ib/software/FFTW/3.3.10-gompi-2021b/lib:/apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/pkgconf/1.8.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2021.10-foss-2021b/lib64:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2021.10-foss-2021b/lib:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/matplotlib/3.4.3-foss-2021b/lib64:/apps/gent/RHEL8/cascadelake-ib/software/matplotlib/3.4.3-foss-2021b/lib:/apps/gent/RHEL8/cascadelake-ib/software/Pillow/8.3.2-GCCcore-11.2.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/Pillow/8.3.2-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/Boost.Python/1.77.0-GCC-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/cairo/1.16.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/GLib/2.69.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/PCRE/8.45-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/gettext/0.21-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/pixman/0.40.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Boost/1.77.0-GCC-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/ICU/69.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Qhull/2020.2-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/LibTIFF/4.3.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/zstd/1.5.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/lz4/1.9.3-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/jbigkit/2.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libjpeg-turbo/2.0.6-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Tk/8.6.11-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/X11/20210802-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/fontconfig/2.13.94-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/util-linux/2.37-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/expat/2.4.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/freetype/2.11.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Brotli/1.0.9-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libpng/1.6.37-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/SciPy-bundle/2021.10-foss-2021b/lib/python3.9/site-packages/numpy/core/lib:/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/GMP/6.2.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/Tcl/8.6.11-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libarchive/3.5.1-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/cURL/7.78.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.2-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/OpenBLAS/0.3.18-GCC-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/OpenMPI/4.1.1-GCC-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/PMIx/4.1.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libfabric/1.13.2-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/UCX/1.11.2-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libevent/2.1.12-GCCcore-11.2.0/lib:/user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/OpenSSL/1.1/lib:/apps/gent/RHEL8/cascadelake-ib/software/hwloc/2.5.0-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libpciaccess/0.16-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/libxml2/2.9.10-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.2.5-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/numactl/2.0.14-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.37-GCCcore-11.2.0/lib:/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.11-GCCcore-11.2.0/lib (previous value: '/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.2-GCCcore-11.2.0/lib64:/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib64') | |
| == 2024-10-12 03:36:11,085 filetools.py:1943 DEBUG Not creating existing path /tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/easybuild_obj | |
| == 2024-10-12 03:36:11,085 environment.py:93 INFO Environment variable FC set to gfortran (previous value: 'gfortran') | |
| == 2024-10-12 03:36:11,085 cmakemake.py:187 DEBUG Determined CMake version: 3.22.1 | |
| == 2024-10-12 03:36:11,088 run.py:181 DEBUG run_cmd: Output of " cmake -DCMAKE_INSTALL_PREFIX=/user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/RDKit/2022.03.5-foss-2021b -DCMAKE_BUILD_TYPE=Release -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DPYTHON_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DPython_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DPython3_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DBOOST_ROOT=/apps/gent/RHEL8/cascadelake-ib/software/Boost/1.77.0-GCC-11.2.0 -DBoost_NO_SYSTEM_PATHS=ON -DPy_ENABLE_SHARED=1 -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_INSTALL_INTREE=OFF -DRDK_BUILD_INCHI_SUPPORT=ON -DBoost_INCLUDE_DIR=$EBROOTBOOST/include -DBoost_LIBRARY_DIR_RELEASE=$EBROOTBOOST/lib /tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/rdkit-Release_2022_03_5/" will be logged to /tmp/eb-w4pg0svc/easybuild-run_cmd-oz9tr1wt.log | |
| == 2024-10-12 03:36:11,094 run.py:222 DEBUG run_cmd: running cmd cmake -DCMAKE_INSTALL_PREFIX=/user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/RDKit/2022.03.5-foss-2021b -DCMAKE_BUILD_TYPE=Release -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DPYTHON_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DPython_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DPython3_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DBOOST_ROOT=/apps/gent/RHEL8/cascadelake-ib/software/Boost/1.77.0-GCC-11.2.0 -DBoost_NO_SYSTEM_PATHS=ON -DPy_ENABLE_SHARED=1 -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_INSTALL_INTREE=OFF -DRDK_BUILD_INCHI_SUPPORT=ON -DBoost_INCLUDE_DIR=$EBROOTBOOST/include -DBoost_LIBRARY_DIR_RELEASE=$EBROOTBOOST/lib /tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/rdkit-Release_2022_03_5/ (in /tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/easybuild_obj) | |
| == 2024-10-12 03:36:11,094 run.py:251 INFO Using /bin/bash as shell for running cmd: cmake -DCMAKE_INSTALL_PREFIX=/user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/RDKit/2022.03.5-foss-2021b -DCMAKE_BUILD_TYPE=Release -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DPYTHON_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DPython_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DPython3_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DBOOST_ROOT=/apps/gent/RHEL8/cascadelake-ib/software/Boost/1.77.0-GCC-11.2.0 -DBoost_NO_SYSTEM_PATHS=ON -DPy_ENABLE_SHARED=1 -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_INSTALL_INTREE=OFF -DRDK_BUILD_INCHI_SUPPORT=ON -DBoost_INCLUDE_DIR=$EBROOTBOOST/include -DBoost_LIBRARY_DIR_RELEASE=$EBROOTBOOST/lib /tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/rdkit-Release_2022_03_5/ | |
| == 2024-10-12 03:36:11,094 run.py:260 INFO running cmd: cmake -DCMAKE_INSTALL_PREFIX=/user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/RDKit/2022.03.5-foss-2021b -DCMAKE_BUILD_TYPE=Release -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DPYTHON_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DPython_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DPython3_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DBOOST_ROOT=/apps/gent/RHEL8/cascadelake-ib/software/Boost/1.77.0-GCC-11.2.0 -DBoost_NO_SYSTEM_PATHS=ON -DPy_ENABLE_SHARED=1 -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_INSTALL_INTREE=OFF -DRDK_BUILD_INCHI_SUPPORT=ON -DBoost_INCLUDE_DIR=$EBROOTBOOST/include -DBoost_LIBRARY_DIR_RELEASE=$EBROOTBOOST/lib /tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/rdkit-Release_2022_03_5/ | |
| == 2024-10-12 03:36:23,366 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): cmd " cmake -DCMAKE_INSTALL_PREFIX=/user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/RDKit/2022.03.5-foss-2021b -DCMAKE_BUILD_TYPE=Release -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DPYTHON_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DPython_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DPython3_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python -DBOOST_ROOT=/apps/gent/RHEL8/cascadelake-ib/software/Boost/1.77.0-GCC-11.2.0 -DBoost_NO_SYSTEM_PATHS=ON -DPy_ENABLE_SHARED=1 -DRDK_INSTALL_STATIC_LIBS=OFF -DRDK_INSTALL_INTREE=OFF -DRDK_BUILD_INCHI_SUPPORT=ON -DBoost_INCLUDE_DIR=$EBROOTBOOST/include -DBoost_LIBRARY_DIR_RELEASE=$EBROOTBOOST/lib /tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/rdkit-Release_2022_03_5/" exited with exit code 1 and output: | |
| -- The C compiler identification is GNU 11.2.0 | |
| -- The CXX compiler identification is GNU 11.2.0 | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working C compiler: /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/bin/gcc - skipped | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Check for working CXX compiler: /apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/bin/g++ - skipped | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- Catch not found in /tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/rdkit-Release_2022_03_5/External/catch/catch | |
| Downloading https://github.com/catchorg/Catch2/archive/v2.13.8.tar.gz... | |
| CATCH: /tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/rdkit-Release_2022_03_5/External/catch/catch/single_include/catch2 | |
| -- Could NOT find InChI in system locations (missing: INCHI_LIBRARY INCHI_INCLUDE_DIR) | |
| Downloading https://www.inchi-trust.org/download/106/INCHI-1-SRC.zip... | |
| -- Found PythonInterp: /apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/bin/python (found version "3.9.6") | |
| -- Found PythonLibs: /apps/gent/RHEL8/cascadelake-ib/software/Python/3.9.6-GCCcore-11.2.0/lib/libpython3.9.so (found version "3.9.6") | |
| Python Install directory /user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/RDKit/2022.03.5-foss-2021b/lib/python3.9/site-packages | |
| PYTHON Py_ENABLE_SHARED: 1 | |
| PYTHON USING LINK LINE: -shared -L/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/lib -L/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.2-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.2-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GMP/6.2.1-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GMP/6.2.1-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.2.5-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.2.5-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.2-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.2-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.1-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.1-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.11-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.11-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.37-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.37-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Rust/1.54.0-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Rust/1.54.0-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/OpenSSL/1.1/lib -L/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.2-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/libffi/3.4.2-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GMP/6.2.1-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GMP/6.2.1-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.2.5-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/XZ/5.2.5-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/SQLite/3.36-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.2-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/ncurses/6.2-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.1-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/libreadline/8.1-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.11-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.11-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/bzip2/1.0.8-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.37-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/binutils/2.37-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/Rust/1.54.0-GCCcore-11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/Rust/1.54.0-GCCcore-11.2.0/lib -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib64 -L/apps/gent/RHEL8/cascadelake-ib/software/GCCcore/11.2.0/lib | |
| nbval not found, disabling the jupyter tests | |
| -- Found Eigen3: /apps/gent/RHEL8/cascadelake-ib/software/Eigen/3.4.0-GCCcore-11.2.0/include (Required is at least version "2.91.0") | |
| -- Looking for pthread.h | |
| -- Looking for pthread.h - found | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed | |
| -- Looking for pthread_create in pthreads | |
| -- Looking for pthread_create in pthreads - not found | |
| -- Looking for pthread_create in pthread | |
| -- Looking for pthread_create in pthread - found | |
| -- Found Threads: TRUE | |
| -- Found Boost: /apps/gent/RHEL8/cascadelake-ib/software/Boost/1.77.0-GCC-11.2.0/lib64/cmake/Boost-1.77.0/BoostConfig.cmake (found suitable version "1.77.0", minimum required is "1.58.0") found components: system serialization iostreams | |
| == Using strict rotor definition | |
| -- Found Boost: /apps/gent/RHEL8/cascadelake-ib/software/Boost/1.77.0-GCC-11.2.0/lib64/cmake/Boost-1.77.0/BoostConfig.cmake (found suitable version "1.77.0", minimum required is "1.58.0") found components: system iostreams | |
| -- maeparser include dir set as 'maeparser_INCLUDE_DIRS-NOTFOUND' | |
| -- maeparser libraries set as 'maeparser_LIBRARIES-NOTFOUND' | |
| -- Could NOT find maeparser (missing: maeparser_INCLUDE_DIRS maeparser_LIBRARIES) | |
| Downloading https://github.com/schrodinger/maeparser/archive/v1.2.4.tar.gz... | |
| -- coordgen include dir set as coordgen_INCLUDE_DIRS-NOTFOUND | |
| -- coordgen libraries set as 'coordgen_LIBRARIES-NOTFOUND' | |
| -- Could NOT find coordgen (missing: coordgen_INCLUDE_DIRS coordgen_LIBRARIES) | |
| Downloading https://github.com/schrodinger/coordgenlibs/archive/v3.0.0.tar.gz... | |
| Downloading https://github.com/rareylab/RingDecomposerLib/archive/v1.1.3_rdkit.tar.gz... | |
| -- Found Boost: /apps/gent/RHEL8/cascadelake-ib/software/Boost/1.77.0-GCC-11.2.0/lib64/cmake/Boost-1.77.0/BoostConfig.cmake (found suitable version "1.77.0", minimum required is "1.58.0") found components: iostreams | |
| -- Found Boost: /apps/gent/RHEL8/cascadelake-ib/software/Boost/1.77.0-GCC-11.2.0/lib64/cmake/Boost-1.77.0/BoostConfig.cmake (found suitable version "1.77.0", minimum required is "1.58.0") found components: system iostreams | |
| -- Found ZLIB: /apps/gent/RHEL8/cascadelake-ib/software/zlib/1.2.11-GCCcore-11.2.0/lib/libz.so (found version "1.2.11") | |
| == Updating Filters.cpp from pains file | |
| == Done updating pains files | |
| Downloading https://fonts.google.com/download?family=Comic%20Neue... | |
| CMake Error at Code/cmake/Modules/RDKitUtils.cmake:257 (MESSAGE): | |
| The md5 checksum for | |
| /tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/rdkit-Release_2022_03_5/Code/GraphMol/MolDraw2D/Comic_Neue.zip | |
| is incorrect; expected: 850b0df852f1cda4970887b540f8f333, found: | |
| 4cd32046e7d03f3905d0d6c433bfae43 | |
| Call Stack (most recent call first): | |
| Code/GraphMol/MolDraw2D/CMakeLists.txt:16 (downloadAndCheckMD5) | |
| -- Configuring incomplete, errors occurred! | |
| See also "/tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/easybuild_obj/CMakeFiles/CMakeOutput.log". | |
| See also "/tmp/vsc40023/easybuild_build/RDKit/2022.03.5/foss-2021b/easybuild_obj/CMakeFiles/CMakeError.log". | |
| (at easybuild/easybuild-framework/easybuild/tools/run.py:695 in parse_cmd_output) | |
| == 2024-10-12 03:36:23,366 build_log.py:267 INFO ... (took 12 secs) | |
| == 2024-10-12 03:36:23,371 config.py:707 DEBUG software install path as specified by 'installpath' and 'subdir_software': /user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software | |
| == 2024-10-12 03:36:23,371 filetools.py:2025 INFO Removing lock /user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/.locks/_user_gent_400_vsc40023_eb_scratch_RHEL8_cascadelake-ampere-ib_software_RDKit_2022.03.5-foss-2021b.lock... | |
| == 2024-10-12 03:36:23,372 filetools.py:385 INFO Path /user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/.locks/_user_gent_400_vsc40023_eb_scratch_RHEL8_cascadelake-ampere-ib_software_RDKit_2022.03.5-foss-2021b.lock successfully removed. | |
| == 2024-10-12 03:36:23,372 filetools.py:2029 INFO Lock removed: /user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/.locks/_user_gent_400_vsc40023_eb_scratch_RHEL8_cascadelake-ampere-ib_software_RDKit_2022.03.5-foss-2021b.lock | |
| == 2024-10-12 03:36:23,372 easyblock.py:4297 WARNING build failed (first 300 chars): cmd " cmake -DCMAKE_INSTALL_PREFIX=/user/gent/400/vsc40023/eb_scratch/RHEL8/cascadelake-ampere-ib/software/RDKit/2022.03.5-foss-2021b -DCMAKE_BUILD_TYPE=Release -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DPYTHON_EXECUTABLE=/apps/gent/RHEL8/cascadelake-ib/software/Python/3.9. | |
| == 2024-10-12 03:36:23,373 easyblock.py:326 INFO Closing log for application name RDKit version 2022.03.5 |
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