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Created June 19, 2024 11:09
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(partial) EasyBuild log for failed build of /tmp/eb-w7wcrg0c/files_pr20814/s/scArches/scArches-0.6.1-foss-2023a.eb (PR(s) #20814)
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scArches-0.6.1-foss-2023a_partial.log
== 2024-06-19 11:07:00,539 run.py:221 DEBUG run_cmd: running cmd /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])' (in /tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024.1.29)
== 2024-06-19 11:07:00,539 run.py:247 INFO running cmd: /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])'
== 2024-06-19 11:07:00,605 run.py:689 DEBUG cmd "/project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sys; print("%s.%s.%s" % sys.version_info[:3])'" exited with exit code 0 and output:
3.11.3
== 2024-06-19 11:07:00,605 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2024-06-19 11:07:00,605 pythonpackage.py:264 DEBUG Determining active Python installation scheme with: /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())'
== 2024-06-19 11:07:00,605 run.py:221 DEBUG run_cmd: running cmd /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())' (in /tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024.1.29)
== 2024-06-19 11:07:00,606 run.py:247 INFO running cmd: /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())'
== 2024-06-19 11:07:00,669 run.py:689 DEBUG cmd "/project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python -c 'import sysconfig; print(sysconfig.get_default_scheme())'" exited with exit code 0 and output:
posix_prefix
== 2024-06-19 11:07:00,669 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2024-06-19 11:07:00,669 pythonpackage.py:269 INFO Active Python installation scheme: posix_prefix
== 2024-06-19 11:07:00,669 pythonpackage.py:869 DEBUG Pre-creating subdirectories ['/project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-2023a/lib/python3.11/site-packages'] in /project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-2023a...
== 2024-06-19 11:07:00,670 filetools.py:1931 DEBUG Not creating existing path /project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-2023a/lib/python3.11/site-packages
== 2024-06-19 11:07:00,670 environment.py:93 INFO Environment variable PYTHONPATH set to /project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/PyZMQ/25.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/pkgconfig/1.5.5-GCCcore-12.3.0-python/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/IPython/8.14.0-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/lxml/4.9.2-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/scvi-tools/1.1.2-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/Optax/0.2.2-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/ml-collections/0.1.1-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/pyro-ppl/1.9.0-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/PyTorch-Lightning/2.2.1-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/pydantic/2.5.3-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/tensorboardX/2.6.2.2-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/PyTorch/2.1.2-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/sympy/1.12-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/gmpy2/2.1.5-GCC-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/expecttest/0.1.5-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/protobuf-python/4.24.0-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/deepdiff/6.7.1-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/BeautifulSoup/4.12.2-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/aiohttp/3.8.5-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/jax/0.4.25-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/ml_dtypes/0.3.2-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/flatbuffers-python/23.5.26-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/scanpy/1.9.8-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/umap-learn/0.5.5-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/statsmodels/0.14.1-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/scikit-learn/1.3.1-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/Seaborn/0.13.2-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/leidenalg/0.10.2-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/python-igraph/0.11.4-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/Z3/4.12.2-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/anndata/0.10.5.post1-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/h5py/3.9.0-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/mpi4py/3.1.4-gompi-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python (previous value: '/project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/tornado/6.3.2-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/PyZMQ/25.1.1-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/pkgconfig/1.5.5-GCCcore-12.3.0-python/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/IPython/8.14.0-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/lxml/4.9.2-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/scvi-tools/1.1.2-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/Optax/0.2.2-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/ml-collections/0.1.1-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/pyro-ppl/1.9.0-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/PyTorch-Lightning/2.2.1-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/pydantic/2.5.3-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/typing-extensions/4.9.0-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/tensorboardX/2.6.2.2-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/PyTorch/2.1.2-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/sympy/1.12-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/gmpy2/2.1.5-GCC-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/expecttest/0.1.5-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/PyYAML/6.0-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/protobuf-python/4.24.0-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/deepdiff/6.7.1-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/BeautifulSoup/4.12.2-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/aiohttp/3.8.5-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/jax/0.4.25-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/ml_dtypes/0.3.2-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/flatbuffers-python/23.5.26-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/scanpy/1.9.8-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/umap-learn/0.5.5-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/numba/0.58.1-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/networkx/3.1-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/statsmodels/0.14.1-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/scikit-learn/1.3.1-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/tqdm/4.66.1-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/Seaborn/0.13.2-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/leidenalg/0.10.2-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/python-igraph/0.11.4-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/Z3/4.12.2-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/anndata/0.10.5.post1-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/hatchling/1.18.0-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/h5py/3.9.0-foss-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/mpi4py/3.1.4-gompi-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/matplotlib/3.7.2-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/Pillow/10.0.0-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/Tkinter/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/pybind11/2.11.1-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/virtualenv/20.23.1-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/cryptography/41.0.1-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/cffi/1.15.1-GCCcore-12.3.0/lib/python3.11/site-packages:/project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/easybuild/python')
== 2024-06-19 11:07:00,670 environment.py:93 INFO Environment variable PATH set to /project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-2023a/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/pkgconf/1.9.5-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/IPython/8.14.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/libxslt/1.1.38-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/ZeroMQ/4.3.4-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/scvi-tools/1.1.2-foss-2023a/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/PyTorch-Lightning/2.2.1-foss-2023a/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/PyTorch/2.1.2-foss-2023a/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/sympy/1.12-gfbf-2023a/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/FFmpeg/6.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/SDL2/2.28.2-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/FriBidi/1.0.12-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/x265/3.5-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/LAME/3.100-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/x264/20230226-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/protobuf/24.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/Ninja/1.11.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/deepdiff/6.7.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/scanpy/1.9.8-foss-2023a/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/LLVM/16.0.6-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/numba/0.58.1-foss-2023a/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/tqdm/4.66.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/python-igraph/0.11.4-foss-2023a/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/cairo/1.17.8-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/GLib/2.77.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/PCRE2/10.42-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/gettext/0.21.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/Clang/16.0.6-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/Z3/4.12.2-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/GLPK/5.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/anndata/0.10.5.post1-foss-2023a/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/hatchling/1.18.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/HDF5/1.14.0-gompi-2023a/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/matplotlib/3.7.2-gfbf-2023a/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/Qhull/2020.2-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/LittleCMS/2.15-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/OpenJPEG/2.5.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/libwebp/1.3.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/giflib/5.2.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/LibTIFF/4.5.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/libdeflate/1.18-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/zstd/1.5.5-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/lz4/1.9.4-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/gzip/1.12-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/jbigkit/2.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/NASM/2.16.01-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/Tk/8.6.13-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/X11/20230603-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/fontconfig/2.14.2-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/util-linux/2.39-GCCcore-12.3.0/sbin:/project/def-maintainers/boegelbot/rocky9/zen3/software/util-linux/2.39-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/expat/2.5.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/freetype/2.13.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/Brotli/1.0.9-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/libpng/1.6.39-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/SciPy-bundle/2023.07-gfbf-2023a/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/pybind11/2.11.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/ncurses/6.4-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/FFTW/3.3.10-GCC-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/UCC/1.2.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/UCX/1.14.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/libevent/2.1.12-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/OpenSSL/1.1/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/project/def-maintainers/boegelbot/rocky9/zen3/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/XZ/5.4.2-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/numactl/2.0.16-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/binutils/2.40-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/GCCcore/12.3.0/bin:/home/boegelbot/easybuild/easybuild-framework:/home/boegelbot/.local/bin:/home/boegelbot/bin:/opt/software/slurm/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/opt/puppetlabs/bin (previous value: 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/pybind11/2.11.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/Python-bundle-PyPI/2023.06-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/virtualenv/20.23.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/SQLite/3.42.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/Tcl/8.6.13-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/ncurses/6.4-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/bzip2/1.0.8-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/FFTW/3.3.10-GCC-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/FlexiBLAS/3.3.1-GCC-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/OpenMPI/4.1.5-GCC-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/UCC/1.2.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/PMIx/4.2.4-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/libfabric/1.18.0-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/UCX/1.14.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/libevent/2.1.12-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/OpenSSL/1.1/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/hwloc/2.9.1-GCCcore-12.3.0/sbin:/project/def-maintainers/boegelbot/rocky9/zen3/software/hwloc/2.9.1-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/libxml2/2.11.4-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/XZ/5.4.2-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/numactl/2.0.16-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/binutils/2.40-GCCcore-12.3.0/bin:/project/def-maintainers/boegelbot/rocky9/zen3/software/GCCcore/12.3.0/bin:/home/boegelbot/easybuild/easybuild-framework:/home/boegelbot/.local/bin:/home/boegelbot/bin:/opt/software/slurm/bin:/usr/bin:/bin:/usr/local/sbin:/usr/sbin:/opt/puppetlabs/bin')
== 2024-06-19 11:07:00,670 pythonpackage.py:579 DEBUG Using 'pip install' for installing Python packages: %(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s
== 2024-06-19 11:07:00,670 pythonpackage.py:229 INFO Determining pip version...
== 2024-06-19 11:07:00,670 run.py:221 DEBUG run_cmd: running cmd /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version (in /tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024.1.29)
== 2024-06-19 11:07:00,670 run.py:247 INFO running cmd: /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version
== 2024-06-19 11:07:01,145 run.py:689 DEBUG cmd "/project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip --version" exited with exit code 0 and output:
pip 23.1.2 from /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages/pip (python 3.11)
== 2024-06-19 11:07:01,145 run.py:725 DEBUG Using default regular expression: (?<![(,-]|\w)(?:error|segmentation fault|failed)(?![(,-]|\.?\w)
== 2024-06-19 11:07:01,146 pythonpackage.py:237 INFO Found pip version: 23.1.2
== 2024-06-19 11:07:01,146 pythonpackage.py:605 INFO Found pip version 23.1.2, OK
== 2024-06-19 11:07:01,146 pythonpackage.py:579 DEBUG Using 'pip install' for installing Python packages: %(python)s -m pip install --prefix=%(prefix)s %(installopts)s %(loc)s
== 2024-06-19 11:07:01,146 run.py:221 DEBUG run_cmd: running cmd /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-2023a --verbose --no-deps --ignore-installed --no-index --no-build-isolation . (in /tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024.1.29)
== 2024-06-19 11:07:01,146 run.py:247 INFO running cmd: /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-2023a --verbose --no-deps --ignore-installed --no-index --no-build-isolation .
== 2024-06-19 11:09:06,522 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): cmd " /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-2023a --verbose --no-deps --ignore-installed --no-index --no-build-isolation ." exited with exit code 1 and output:
Using pip 23.1.2 from /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages/pip (python 3.11)
Processing /tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024.1.29
Preparing metadata (pyproject.toml): started
Running command Preparing metadata (pyproject.toml)
Preparing metadata (pyproject.toml): finished with status 'done'
Building wheels for collected packages: furo
Building wheel for furo (pyproject.toml): started
Running command Building wheel for furo (pyproject.toml)
[stb] # nodeenv does not exist.
[stb] # Generating new nodeenv with NodeJS 18.16.0!
[stb] $ python -m nodeenv --node=18.16.0 --prebuilt --clean-src
/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024.1.29/.nodeenv
* Install prebuilt node (18.16.0) .Incomplete read while reading from https://nodejs.org/download/release/v18.16.0/node-v18.16.0-linux-x64.tar.gz - IncompleteRead(2957312 bytes read, 41213154 more expected)
Failed to download from https://nodejs.org/download/release/v18.16.0/node-v18.16.0-linux-x64.tar.gz
..
Traceback (most recent call last)
in <module>:12
locals
rich = <module 'rich' from
'/project/def-maintainers/boegelbot/rocky9/zen3/software/PyTor
runpy = <module 'runpy' (frozen)>
urllib = <module 'urllib' from
'/project/def-maintainers/boegelbot/rocky9/zen3/software/Pytho
in run_module:226
locals
alter_sys = True
code = <code object <module> at 0x122a060, file
"/project/def-maintainers/boegelbot/rocky9/zen3/software
line 1>
init_globals = None
mod_name = 'nodeenv'
mod_spec = ModuleSpec(name='nodeenv',
loader=<_frozen_importlib_external.SourceFileLoader
object at 0x14f13e1e5850>,
origin='/project/def-maintainers/boegelbot/rocky9/zen3/s
run_name = '__main__'
in _run_module_code:98
locals
code = <code object <module> at 0x122a060, file
"/project/def-maintainers/boegelbot/rocky9/zen3/software
line 1>
fname = '/project/def-maintainers/boegelbot/rocky9/zen3/software
init_globals = None
mod_globals = {
'__name__': '__main__',
'__doc__': '\n nodeenv\n ~~~~~~~\n Node.js
virtual environment\n\n :copyright: (c) 20'+70,
'__package__': '',
'__loader__':
<_frozen_importlib_external.SourceFileLoader object at
0x14f13e1e5850>,
'__spec__': ModuleSpec(name='nodeenv',
loader=<_frozen_importlib_external.SourceFileLoader
object at 0x14f13e1e5850>,
origin='/project/def-maintainers/boegelbot/rocky9/zen3/s
'__file__':
'/project/def-maintainers/boegelbot/rocky9/zen3/software
'__cached__':
'/project/def-maintainers/boegelbot/rocky9/zen3/software
'__builtins__': {
'__name__': 'builtins',
'__doc__': 'Built-in functions, exceptions, and
other objects.\n\nNoteworthy: None is the `nil'+46,
'__package__': '',
'__loader__': <class
'_frozen_importlib.BuiltinImporter'>,
'__spec__': ModuleSpec(name='builtins',
loader=<class '_frozen_importlib.BuiltinImporter'>,
origin='built-in'),
'__build_class__': <built-in function
__build_class__>,
'__import__': <built-in function __import__>,
'abs': <built-in function abs>,
'all': <built-in function all>,
'any': <built-in function any>,
... +147
},
'contextlib': <module 'contextlib' from
'/project/def-maintainers/boegelbot/rocky9/zen3/software
'io': <module 'io' (frozen)>,
... +81
}
mod_name = '__main__'
mod_spec = ModuleSpec(name='nodeenv',
loader=<_frozen_importlib_external.SourceFileLoader
object at 0x14f13e1e5850>,
origin='/project/def-maintainers/boegelbot/rocky9/zen3/s
pkg_name = None
script_name = None
temp_module = <runpy._TempModule object at 0x14f13de62c50>
in _run_code:88
locals
cached = '/project/def-maintainers/boegelbot/rocky9/zen3/software
code = <code object <module> at 0x122a060, file
"/project/def-maintainers/boegelbot/rocky9/zen3/software
line 1>
fname = '/project/def-maintainers/boegelbot/rocky9/zen3/software
init_globals = None
loader = <_frozen_importlib_external.SourceFileLoader object at
0x14f13e1e5850>
mod_name = '__main__'
mod_spec = ModuleSpec(name='nodeenv',
loader=<_frozen_importlib_external.SourceFileLoader
object at 0x14f13e1e5850>,
origin='/project/def-maintainers/boegelbot/rocky9/zen3/s
pkg_name = ''
run_globals = {
'__name__': '__main__',
'__doc__': '\n nodeenv\n ~~~~~~~\n Node.js
virtual environment\n\n :copyright: (c) 20'+70,
'__package__': '',
'__loader__':
<_frozen_importlib_external.SourceFileLoader object at
0x14f13e1e5850>,
'__spec__': ModuleSpec(name='nodeenv',
loader=<_frozen_importlib_external.SourceFileLoader
object at 0x14f13e1e5850>,
origin='/project/def-maintainers/boegelbot/rocky9/zen3/s
'__file__':
'/project/def-maintainers/boegelbot/rocky9/zen3/software
'__cached__':
'/project/def-maintainers/boegelbot/rocky9/zen3/software
'__builtins__': {
'__name__': 'builtins',
'__doc__': 'Built-in functions, exceptions, and
other objects.\n\nNoteworthy: None is the `nil'+46,
'__package__': '',
'__loader__': <class
'_frozen_importlib.BuiltinImporter'>,
'__spec__': ModuleSpec(name='builtins',
loader=<class '_frozen_importlib.BuiltinImporter'>,
origin='built-in'),
'__build_class__': <built-in function
__build_class__>,
'__import__': <built-in function __import__>,
'abs': <built-in function abs>,
'all': <built-in function all>,
'any': <built-in function any>,
... +147
},
'contextlib': <module 'contextlib' from
'/project/def-maintainers/boegelbot/rocky9/zen3/software
'io': <module 'io' (frozen)>,
... +81
}
script_name = None
/project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-
2023a/lib/python3.11/site-packages/nodeenv.py:1544 in <module>
1541 """
1542
1543 if __name__ == '__main__':
1544 main()
1545
locals
_download_node_file = <function _download_node_file at
0x14f13dc2eac0>
_get_versions_json = <function _get_versions_json at
0x14f13dc2f380>
_quote = <function quote at 0x14f13dbf23e0>
abspath = <function abspath at 0x14f13e9aa5c0>
ACTIVATE_BAT = '\n@echo off\nset
"NODE_VIRTUAL_ENV=__NODE_VIRTUAL_ENV__"\
not defined PROMPT (\n '+513
ACTIVATE_FISH = '\n\n# This file must be used with
"source bin/activate.fish" *from fish*\n#
you can'+4298
ACTIVATE_PS1 = '\nfunction global:deactivate
([switch]$NonDestructive) {\n # Revert
to original'+1306
ACTIVATE_SH = '\n\n# This file must be used with
"source bin/activate" *from bash*\n# you
cannot r'+3694
argparse = <module 'argparse' from
'/project/def-maintainers/boegelbot/rock
build_node_from_src = <function build_node_from_src at
0x14f13dc2ede0>
callit = <function callit at 0x14f13dc2e5c0>
clear_output = <function clear_output at 0x14f13dc2d120>
Config = <class '__main__.Config'>
ConfigParser = <class 'configparser.ConfigParser'>
contextlib = <module 'contextlib' from
'/project/def-maintainers/boegelbot/rock
copy_node_from_prebuilt = <function copy_node_from_prebuilt at
0x14f13dc2ed40>
copytree = <function copytree at 0x14f13dc2eca0>
create_environment = <function create_environment at
0x14f13dc2f2e0>
create_logger = <function create_logger at
0x14f13dc2e200>
CYGWIN_NODE = '#!/bin/sh\n\nif [ -r "$1" ]; then\n
SCRIPT_PATH=$(cygpath -w "$1")\n
shift\n '+84
DEACTIVATE_BAT = '@echo off\nif defined
_OLD_VIRTUAL_PROMPT (\n set
"PROMPT=%_OLD_VIRTUAL_PROMPT%'+262
DISABLE_PROMPT = {
'activate': "\n# disable nodeenv's
prompt\n# (prompt already changed by
original virtualenv's s"+89,
'activate.fish': "\n# disable
nodeenv's prompt\n# (prompt already
changed by original virtualenv's s"+93
}
download_node_src = <function download_node_src at
0x14f13dc2eb60>
ENABLE_PROMPT = {
'activate': '\nunset
NODE_VIRTUAL_ENV_DISABLE_PROMPT\n',
'activate.fish': '\nset -e
NODE_VIRTUAL_ENV_DISABLE_PROMPT\n'
}
get_env_dir = <function get_env_dir at 0x14f13dc2f6a0>
get_last_lts_node_version = <function get_last_lts_node_version at
0x14f13dc2f600>
get_last_stable_node_version = <function get_last_stable_node_version at
0x14f13dc2f560>
get_node_bin_url = <function get_node_bin_url at
0x14f13dc2e840>
get_node_src_url = <function get_node_src_url at
0x14f13dc2e8e0>
get_node_versions = <function get_node_versions at
0x14f13dc2f420>
get_root_url = <function get_root_url at 0x14f13dc2e660>
glob = <module 'glob' from
'/project/def-maintainers/boegelbot/rock
http = <module 'http' from
'/project/def-maintainers/boegelbot/rock
ignore_ssl_certs = False
IncompleteRead = <class 'http.client.IncompleteRead'>
install_activate = <function install_activate at
0x14f13dc2f1a0>
install_node = <function install_node at 0x14f13dc2ee80>
install_node_wrapped = <function install_node_wrapped at
0x14f13dc2ef20>
install_npm = <function install_npm at 0x14f13dc2efc0>
install_npm_win = <function install_npm_win at
0x14f13dc2f060>
install_packages = <function install_packages at
0x14f13dc2f100>
io = <module 'io' (frozen)>
is_CYGWIN = False
is_PY3 = True
is_riscv64 = <function is_riscv64 at 0x14f13dc2e7a0>
is_WIN = False
is_x86_64_musl = <function is_x86_64_musl at
0x14f13dc2e700>
iteritems = operator.methodcaller('items')
join = <function join at 0x14f13e9a9e40>
json = <module 'json' from
'/project/def-maintainers/boegelbot/rock
logger = <Logger nodeenv (INFO)>
logging = <module 'logging' from
'/project/def-maintainers/boegelbot/rock
main = <function main at 0x14f13dc2f740>
make_executable = <function make_executable at
0x14f13dc2e480>
make_parser = <function make_parser at 0x14f13e598360>
mkdir = <function mkdir at 0x14f13dc2e3e0>
node_version_from_args = <function node_version_from_args at
0x14f13dc2e160>
nodeenv_version = '1.9.0'
operator = <module 'operator' from
'/project/def-maintainers/boegelbot/rock
os = <module 'os' (frozen)>
parse_args = <function parse_args at 0x14f13dc2e340>
parse_version = <function parse_version at
0x14f13dc2e0c0>
platform = <module 'platform' from
'/project/def-maintainers/boegelbot/rock
PREDEACTIVATE_SH = '\nif type -p deactivate_node >
/dev/null; then deactivate_node;fi\n'
print_node_versions = <function print_node_versions at
0x14f13dc2f4c0>
re = <module 're' from
'/project/def-maintainers/boegelbot/rock
remove_env_bin_from_path = <function remove_env_bin_from_path at
0x14f13dc2e020>
set_predeactivate_hook = <function set_predeactivate_hook at
0x14f13dc2f240>
SHIM = "#!/usr/bin/env bash\nexport
NODE_PATH='__NODE_VIRTUAL_ENV__/lib/node
shutil = <module 'shutil' from
'/project/def-maintainers/boegelbot/rock
src_base_url = 'https://nodejs.org/download/release'
ssl = <module 'ssl' from
'/project/def-maintainers/boegelbot/rock
stat = <module 'stat' (frozen)>
subprocess = <module 'subprocess' from
'/project/def-maintainers/boegelbot/rock
sys = <module 'sys' (built-in)>
sysconfig = <module 'sysconfig' from
'/project/def-maintainers/boegelbot/rock
tarfile = <module 'tarfile' from
'/project/def-maintainers/boegelbot/rock
tarfile_open = <function tarfile_open at 0x14f13dc2ea20>
to_utf8 = <function to_utf8 at 0x14f13de5fa60>
urllib2 = <module 'urllib.request' from
'/project/def-maintainers/boegelbot/rock
urlopen = <function urlopen at 0x14f13dc2ec00>
writefile = <function writefile at 0x14f13dc2e520>
zipfile = <module 'zipfile' from
'/project/def-maintainers/boegelbot/rock
/project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-
2023a/lib/python3.11/site-packages/nodeenv.py:1126 in main
1123 install_packages(env_dir, args)
1124 else:
1125 env_dir = get_env_dir(args)
1126 create_environment(env_dir, args)
1127
1128
1129 # ---------------------------------------------------------
locals
args = Namespace(node='18.16.0', mirror=None, jobs='2',
load_average=None, without_ssl=False, debug=False,
profile=False, make_path='make', prebuilt=True,
verbose=True, quiet=False, config_file=['./tox.ini',
'./setup.cfg', '~/.nodeenvrc'], requirements='',
prompt=None, list=False, update=False, with_npm=False,
npm='latest', no_npm_clean=False, python_virtualenv=False,
clean_src=True, force=False, ignore_ssl_certs=False,
env_dir='/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/fur
env_dir = '/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024.1
src_domain = 'nodejs.org'
/project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-
2023a/lib/python3.11/site-packages/nodeenv.py:1002 in create_environment
999 mkdir(src_dir)
1000
1001 if args.node != "system":
1002 install_node(env_dir, src_dir, args)
1003 else:
1004 mkdir(join(env_dir, 'bin'))
1005 mkdir(join(env_dir, 'lib'))
locals
args = Namespace(node='18.16.0', mirror=None, jobs='2',
load_average=None, without_ssl=False, debug=False,
profile=False, make_path='make', prebuilt=True, verbose=True,
quiet=False, config_file=['./tox.ini', './setup.cfg',
'~/.nodeenvrc'], requirements='', prompt=None, list=False,
update=False, with_npm=False, npm='latest',
no_npm_clean=False, python_virtualenv=False, clean_src=True,
force=False, ignore_ssl_certs=False,
env_dir='/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2
env_dir = '/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024.1.29
src_dir = '/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024.1.29
/project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-
2023a/lib/python3.11/site-packages/nodeenv.py:759 in install_node
756 and install it in virtual environment.
757 """
758 try:
759 install_node_wrapped(env_dir, src_dir, args)
760 except BaseException:
761 # this restores the newline suppressed by continued=True
762 logger.info('')
locals
args = Namespace(node='18.16.0', mirror=None, jobs='2',
load_average=None, without_ssl=False, debug=False,
profile=False, make_path='make', prebuilt=True, verbose=True,
quiet=False, config_file=['./tox.ini', './setup.cfg',
'~/.nodeenvrc'], requirements='', prompt=None, list=False,
update=False, with_npm=False, npm='latest',
no_npm_clean=False, python_virtualenv=False, clean_src=True,
force=False, ignore_ssl_certs=False,
env_dir='/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2
env_dir = '/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024.1.29
src_dir = '/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024.1.29
/project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-
2023a/lib/python3.11/site-packages/nodeenv.py:794 in install_node_wrapped
791 logger.info('.', extra=dict(continued=True))
792
793 if args.prebuilt:
794 copy_node_from_prebuilt(env_dir, src_dir, args.node)
795 else:
796 build_node_from_src(env_dir, src_dir, node_src_dir, args)
797
locals
args = Namespace(node='18.16.0', mirror=None, jobs='2',
load_average=None, without_ssl=False, debug=False,
profile=False, make_path='make', prebuilt=True,
verbose=True, quiet=False, config_file=['./tox.ini',
'./setup.cfg', '~/.nodeenvrc'], requirements='',
prompt=None, list=False, update=False, with_npm=False,
npm='latest', no_npm_clean=False,
python_virtualenv=False, clean_src=True, force=False,
ignore_ssl_certs=False,
env_dir='/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/f
env_dir = '/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024
node_src_dir = '/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024
node_url = 'https://nodejs.org/download/release/v18.16.0/node-v18.1
src_dir = '/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024
src_type = 'prebuilt'
/project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-
2023a/lib/python3.11/site-packages/nodeenv.py:689 in copy_node_from_prebuilt
686 dest = env_dir
687
688 src_folder_tpl = src_dir + to_utf8('/node-v%s*' % node_version)
689 src_folder, = glob.glob(src_folder_tpl)
690 copytree(src_folder, dest, True)
691
692 if is_CYGWIN:
locals
dest = '/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-20
env_dir = '/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-20
node_version = '18.16.0'
src_dir = '/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-20
src_folder_tpl = '/tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-20
ValueError: not enough values to unpack (expected 1, got 0)
error: nodeenv-creation-failed
Failed to create a `nodeenv`
> See above for failure output from the underlying tooling.
hint: A `urllib.error.HTTPError` indicates that the issue is related to the
network or the availability of NodeJS release files. It may mean the node
version that this tool is trying to fetch is no longer available, for
example if there is no compatible NodeJS binary for the operating system.
link: https://sphinx-theme-builder.rtfd.io/errors/#nodeenv-creation-failed
error: subprocess-exited-with-error
Building wheel for furo (pyproject.toml) did not run successfully.
exit code: 1
> See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
full command: /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/lib/python3.11/site-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/eb-w7wcrg0c/tmpdfw2oijk
cwd: /tmp/boegelbot/scArches/0.6.1/foss-2023a/furo/furo-2024.1.29
Building wheel for furo (pyproject.toml): finished with status 'error'
ERROR: Failed building wheel for furo
Failed to build furo
ERROR: Could not build wheels for furo, which is required to install pyproject.toml-based projects
(at easybuild/easybuild-framework/easybuild/tools/run.py:682 in parse_cmd_output)
== 2024-06-19 11:09:06,522 build_log.py:267 INFO ... (took 2 mins 7 secs)
== 2024-06-19 11:09:06,522 build_log.py:267 INFO ... (took 2 mins 37 secs)
== 2024-06-19 11:09:06,522 config.py:700 DEBUG software install path as specified by 'installpath' and 'subdir_software': /project/def-maintainers/boegelbot/rocky9/zen3/software
== 2024-06-19 11:09:06,523 filetools.py:2013 INFO Removing lock /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_scArches_0.6.1-foss-2023a.lock...
== 2024-06-19 11:09:06,524 filetools.py:383 INFO Path /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_scArches_0.6.1-foss-2023a.lock successfully removed.
== 2024-06-19 11:09:06,524 filetools.py:2017 INFO Lock removed: /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_scArches_0.6.1-foss-2023a.lock
== 2024-06-19 11:09:06,524 easyblock.py:4285 WARNING build failed (first 300 chars): cmd " /project/def-maintainers/boegelbot/rocky9/zen3/software/Python/3.11.3-GCCcore-12.3.0/bin/python -m pip install --prefix=/project/def-maintainers/boegelbot/rocky9/zen3/software/scArches/0.6.1-foss-2023a --verbose --no-deps --ignore-installed --no-index --no-build-isolation ." exited with
== 2024-06-19 11:09:06,525 easyblock.py:328 INFO Closing log for application name scArches version 0.6.1
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