Created
July 19, 2020 15:52
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(partial) EasyBuild log for failed build of /tmp/eb-v7993o5y/files_pr10908/s/SLEPc/SLEPc-3.12.2-intel-2019b-Python-3.7.4.eb (PR #10908)
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| os.environ["BOOST_ROOT"] = "/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b"; | |
| os.environ["__LMOD_REF_COUNT_CMAKE_PREFIX_PATH"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4:1;/shared/easybuilder/CentOS8/haswell/software/Hypre/2.18.2-intel-2019b:1;/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0:1;/shared/easybuilder/CentOS8/haswell/software/MUMPS/5.2.1-intel-2019b-metis:1;/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b:1;/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0:1;/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b:1;/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4:1;/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0:1;/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0:1;/shared/easybuilder/CentOS8/haswell/software/GMP/6.1.2-GCCcore-8.3.0:1;/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0:1;/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0:1;/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0:1;/shared/easybuilder/CentOS8/haswell/software/libreadline/8.0-GCCcore-8.3.0:1;/shared/easybuilder/CentOS8/haswell/software/ncurses/6.1-GCCcore-8.3.0:1;/shared/easybuilder/CentOS8/haswell/software/bzip2/1.0.8-GCCcore-8.3.0:1;/shared/easybuilder/CentOS8/haswell/software/binutils/2.32-GCCcore-8.3.0:1;/shared/easybuilder/CentOS8/haswell/software/zlib/1.2.11-GCCcore-8.3.0:1;/shared/easybuilder/CentOS8/haswell/software/GCCcore/8.3.0:1"; | |
| os.environ["CMAKE_PREFIX_PATH"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4:/shared/easybuilder/CentOS8/haswell/software/Hypre/2.18.2-intel-2019b:/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0:/shared/easybuilder/CentOS8/haswell/software/MUMPS/5.2.1-intel-2019b-metis:/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b:/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0:/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b:/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4:/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0:/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0:/shared/easybuilder/CentOS8/haswell/software/GMP/6.1.2-GCCcore-8.3.0:/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0:/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0:/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0:/shared/easybuilder/CentOS8/haswell/software/libreadline/8.0-GCCcore-8.3.0:/shared/easybuilder/CentOS8/haswell/software/ncurses/6.1-GCCcore-8.3.0:/shared/easybuilder/CentOS8/haswell/software/bzip2/1.0.8-GCCcore-8.3.0:/shared/easybuilder/CentOS8/haswell/software/binutils/2.32-GCCcore-8.3.0:/shared/easybuilder/CentOS8/haswell/software/zlib/1.2.11-GCCcore-8.3.0:/shared/easybuilder/CentOS8/haswell/software/GCCcore/8.3.0"; | |
| os.environ["__LMOD_REF_COUNT_CPATH"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/include:1;/shared/easybuilder/CentOS8/haswell/software/Hypre/2.18.2-intel-2019b/include:1;/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/include:1;/shared/easybuilder/CentOS8/haswell/software/MUMPS/5.2.1-intel-2019b-metis/include:1;/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/include:1;/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0/include:1;/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b/include:1;/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include:1;/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/include:1;/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/include:1;/shared/easybuilder/CentOS8/haswell/software/GMP/6.1.2-GCCcore-8.3.0/include:1;/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0/include:1;/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0/include:1;/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include:1;/shared/easybuilder/CentOS8/haswell/software/libreadline/8.0-GCCcore-8.3.0/include:1;/shared/easybuilder/CentOS8/haswell/software/ncurses/6.1-GCCcore-8.3.0/include:1;/shared/easybuilder/CentOS8/haswell/software/bzip2/1.0.8-GCCcore-8.3.0/include:1;/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include/fftw:1;/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include:1;/shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/include64:1;/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/tbb/include:1;/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/mkl/include:1;/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/ipp/include:1;/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/daal/include:1;/shared/easybuilder/CentOS8/haswell/software/binutils/2.32-GCCcore-8.3.0/include:1;/shared/easybuilder/CentOS8/haswell/software/zlib/1.2.11-GCCcore-8.3.0/include:1;/apps/slurm/default/include:1;/opt/openldap-2.4.49/include:1;/apps/modules/lua/5.3.5/include:1;/opt/git/include:1"; | |
| os.environ["CPATH"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/include:/shared/easybuilder/CentOS8/haswell/software/Hypre/2.18.2-intel-2019b/include:/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/include:/shared/easybuilder/CentOS8/haswell/software/MUMPS/5.2.1-intel-2019b-metis/include:/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/include:/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0/include:/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b/include:/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/include:/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/include:/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/include:/shared/easybuilder/CentOS8/haswell/software/GMP/6.1.2-GCCcore-8.3.0/include:/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0/include:/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0/include:/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/include:/shared/easybuilder/CentOS8/haswell/software/libreadline/8.0-GCCcore-8.3.0/include:/shared/easybuilder/CentOS8/haswell/software/ncurses/6.1-GCCcore-8.3.0/include:/shared/easybuilder/CentOS8/haswell/software/bzip2/1.0.8-GCCcore-8.3.0/include:/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include/fftw:/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include:/shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/include64:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/tbb/include:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/mkl/include:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/ipp/include:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/daal/include:/shared/easybuilder/CentOS8/haswell/software/binutils/2.32-GCCcore-8.3.0/include:/shared/easybuilder/CentOS8/haswell/software/zlib/1.2.11-GCCcore-8.3.0/include:/apps/slurm/default/include:/opt/openldap-2.4.49/include:/apps/modules/lua/5.3.5/include:/opt/git/include"; | |
| os.environ["EBDEVELBOOST"] = "/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b/easybuild/Boost-1.71.0-iimpi-2019b-easybuild-devel"; | |
| os.environ["EBDEVELHYPRE"] = "/shared/easybuilder/CentOS8/haswell/software/Hypre/2.18.2-intel-2019b/easybuild/Hypre-2.18.2-intel-2019b-easybuild-devel"; | |
| os.environ["EBDEVELMETIS"] = "/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0/easybuild/METIS-5.1.0-GCCcore-8.3.0-easybuild-devel"; | |
| os.environ["EBDEVELMUMPS"] = "/shared/easybuilder/CentOS8/haswell/software/MUMPS/5.2.1-intel-2019b-metis/easybuild/MUMPS-5.2.1-intel-2019b-metis-easybuild-devel"; | |
| os.environ["EBDEVELPETSC"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/easybuild/PETSc-3.12.4-intel-2019b-Python-3.7.4-easybuild-devel"; | |
| os.environ["EBDEVELSCIPYMINBUNDLE"] = "/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/easybuild/SciPy-bundle-2019.10-intel-2019b-Python-3.7.4-easybuild-devel"; | |
| os.environ["EBDEVELSCOTCH"] = "/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/easybuild/SCOTCH-6.0.9-iimpi-2019b-easybuild-devel"; | |
| os.environ["EBDEVELSUITESPARSE"] = "/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/easybuild/SuiteSparse-5.6.0-intel-2019b-METIS-5.1.0-easybuild-devel"; | |
| os.environ["EBEXTSLISTSCIPYMINBUNDLE"] = "numpy-1.17.3,scipy-1.3.1,mpi4py-3.0.2,pandas-0.25.3,mpmath-1.1.0"; | |
| os.environ["EBROOTBOOST"] = "/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b"; | |
| os.environ["EBROOTHYPRE"] = "/shared/easybuilder/CentOS8/haswell/software/Hypre/2.18.2-intel-2019b"; | |
| os.environ["EBROOTMETIS"] = "/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0"; | |
| os.environ["EBROOTMUMPS"] = "/shared/easybuilder/CentOS8/haswell/software/MUMPS/5.2.1-intel-2019b-metis"; | |
| os.environ["EBROOTPETSC"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4"; | |
| os.environ["EBROOTSCIPYMINBUNDLE"] = "/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4"; | |
| os.environ["EBROOTSCOTCH"] = "/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b"; | |
| os.environ["EBROOTSUITESPARSE"] = "/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0"; | |
| os.environ["EBVERSIONBOOST"] = "1.71.0"; | |
| os.environ["EBVERSIONHYPRE"] = "2.18.2"; | |
| os.environ["EBVERSIONMETIS"] = "5.1.0"; | |
| os.environ["EBVERSIONMUMPS"] = "5.2.1"; | |
| os.environ["EBVERSIONPETSC"] = "3.12.4"; | |
| os.environ["EBVERSIONSCIPYMINBUNDLE"] = "2019.10"; | |
| os.environ["EBVERSIONSCOTCH"] = "6.0.9"; | |
| os.environ["EBVERSIONSUITESPARSE"] = "5.6.0"; | |
| os.environ["__LMOD_REF_COUNT_LD_LIBRARY_PATH"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib:1;/shared/easybuilder/CentOS8/haswell/software/Hypre/2.18.2-intel-2019b/lib:1;/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/lib:1;/shared/easybuilder/CentOS8/haswell/software/MUMPS/5.2.1-intel-2019b-metis/lib:1;/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/lib:1;/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0/lib:1;/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b/lib:1;/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/lib:1;/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib:1;/apps/slurm/default/lib:1;/opt/openldap-2.4.49/lib/lib:1;/opt/git/lib:1"; | |
| os.environ["LD_LIBRARY_PATH"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib:/shared/easybuilder/CentOS8/haswell/software/Hypre/2.18.2-intel-2019b/lib:/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/lib:/shared/easybuilder/CentOS8/haswell/software/MUMPS/5.2.1-intel-2019b-metis/lib:/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/lib:/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b/lib:/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/lib:/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib:/apps/slurm/default/lib:/opt/openldap-2.4.49/lib/lib:/opt/git/lib"; | |
| os.environ["__LMOD_REF_COUNT_LIBRARY_PATH"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib:1;/shared/easybuilder/CentOS8/haswell/software/Hypre/2.18.2-intel-2019b/lib:1;/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/lib:1;/shared/easybuilder/CentOS8/haswell/software/MUMPS/5.2.1-intel-2019b-metis/lib:1;/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/lib:1;/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0/lib:1;/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b/lib:1;/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/lib:1;/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib:1;/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/lib:1;/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/lib64:1;/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/lib:1;/shared/easybuilder/CentOS8/haswell/software/GMP/6.1.2-GCCcore-8.3.0/lib:1;/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0/lib:1;/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0/lib:1;/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/lib:1;/shared/easybuilder/CentOS8/haswell/software/libreadline/8.0-GCCcore-8.3.0/lib:1;/shared/easybuilder/CentOS8/haswell/software/ncurses/6.1-GCCcore-8.3.0/lib:1;/shared/easybuilder/CentOS8/haswell/software/bzip2/1.0.8-GCCcore-8.3.0/lib:1;/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64:1;/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib/intel64:1;/shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/lib64:1;/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/daal/lib/intel64_lin:1;/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/tbb/lib/intel64/gcc4.4:1;/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/mpi/intel64:1;/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/mkl/lib/intel64:1;/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/ipp/lib/intel64:1;/shared/easybuilder/CentOS8/haswell/software/binutils/2.32-GCCcore-8.3.0/lib:1;/shared/easybuilder/CentOS8/haswell/software/zlib/1.2.11-GCCcore-8.3.0/lib:1;/apps/slurm/default/lib:1;/opt/openldap-2.4.49/lib:1;/opt/git/lib:1"; | |
| os.environ["LIBRARY_PATH"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib:/shared/easybuilder/CentOS8/haswell/software/Hypre/2.18.2-intel-2019b/lib:/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/lib:/shared/easybuilder/CentOS8/haswell/software/MUMPS/5.2.1-intel-2019b-metis/lib:/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/lib:/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b/lib:/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/lib:/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib:/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/lib64:/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/GMP/6.1.2-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/libreadline/8.0-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/ncurses/6.1-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/bzip2/1.0.8-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64:/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib/intel64:/shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/lib64:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/daal/lib/intel64_lin:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/tbb/lib/intel64/gcc4.4:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/mpi/intel64:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/mkl/lib/intel64:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/ipp/lib/intel64:/shared/easybuilder/CentOS8/haswell/software/binutils/2.32-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/zlib/1.2.11-GCCcore-8.3.0/lib:/apps/slurm/default/lib:/opt/openldap-2.4.49/lib:/opt/git/lib"; | |
| os.environ["__LMOD_REF_COUNT_LOADEDMODULES"] = "GCCcore/8.3.0:1;zlib/1.2.11-GCCcore-8.3.0:1;binutils/2.32-GCCcore-8.3.0:1;iccifort/2019.5.281:1;impi/2018.5.288-iccifort-2019.5.281:1;iimpi/2019b:1;imkl/2019.5.281-iimpi-2019b:1;intel/2019b:1;bzip2/1.0.8-GCCcore-8.3.0:1;ncurses/6.1-GCCcore-8.3.0:1;libreadline/8.0-GCCcore-8.3.0:1;Tcl/8.6.9-GCCcore-8.3.0:1;SQLite/3.29.0-GCCcore-8.3.0:1;XZ/5.2.4-GCCcore-8.3.0:1;GMP/6.1.2-GCCcore-8.3.0:1;libffi/3.2.1-GCCcore-8.3.0:1;Python/3.7.4-GCCcore-8.3.0:1;SciPy-bundle/2019.10-intel-2019b-Python-3.7.4:1;Boost/1.71.0-iimpi-2019b:1;METIS/5.1.0-GCCcore-8.3.0:1;SCOTCH/6.0.9-iimpi-2019b:1;MUMPS/5.2.1-intel-2019b-metis:1;SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0:1;Hypre/2.18.2-intel-2019b:1;PETSc/3.12.4-intel-2019b-Python-3.7.4:1"; | |
| os.environ["LOADEDMODULES"] = "GCCcore/8.3.0:zlib/1.2.11-GCCcore-8.3.0:binutils/2.32-GCCcore-8.3.0:iccifort/2019.5.281:impi/2018.5.288-iccifort-2019.5.281:iimpi/2019b:imkl/2019.5.281-iimpi-2019b:intel/2019b:bzip2/1.0.8-GCCcore-8.3.0:ncurses/6.1-GCCcore-8.3.0:libreadline/8.0-GCCcore-8.3.0:Tcl/8.6.9-GCCcore-8.3.0:SQLite/3.29.0-GCCcore-8.3.0:XZ/5.2.4-GCCcore-8.3.0:GMP/6.1.2-GCCcore-8.3.0:libffi/3.2.1-GCCcore-8.3.0:Python/3.7.4-GCCcore-8.3.0:SciPy-bundle/2019.10-intel-2019b-Python-3.7.4:Boost/1.71.0-iimpi-2019b:METIS/5.1.0-GCCcore-8.3.0:SCOTCH/6.0.9-iimpi-2019b:MUMPS/5.2.1-intel-2019b-metis:SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0:Hypre/2.18.2-intel-2019b:PETSc/3.12.4-intel-2019b-Python-3.7.4"; | |
| os.environ["__LMOD_REF_COUNT_MANPATH"] = "/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/man:1;/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/share/man:1;/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/man:1;/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/share/man:1;/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0/share/man:1;/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0/share/man:1;/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/share/man:1;/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/man:1;/shared/easybuilder/CentOS8/haswell/software/libreadline/8.0-GCCcore-8.3.0/share/man:1;/shared/easybuilder/CentOS8/haswell/software/ncurses/6.1-GCCcore-8.3.0/share/man:1;/shared/easybuilder/CentOS8/haswell/software/bzip2/1.0.8-GCCcore-8.3.0/man:1;/shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/man:1;/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/man/common:1;/shared/easybuilder/CentOS8/haswell/software/binutils/2.32-GCCcore-8.3.0/share/man:1;/shared/easybuilder/CentOS8/haswell/software/zlib/1.2.11-GCCcore-8.3.0/share/man:1;/shared/easybuilder/CentOS8/haswell/software/GCCcore/8.3.0/share/man:1;/apps/slurm/default/share/man:1;/opt/openldap-2.4.49/share/man:1;/apps/modules/lmod/lmod/share/man:1;/opt/git/share/man:1"; | |
| os.environ["MANPATH"] = "/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/man:/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/share/man:/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/man:/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/share/man:/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0/share/man:/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0/share/man:/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/share/man:/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/man:/shared/easybuilder/CentOS8/haswell/software/libreadline/8.0-GCCcore-8.3.0/share/man:/shared/easybuilder/CentOS8/haswell/software/ncurses/6.1-GCCcore-8.3.0/share/man:/shared/easybuilder/CentOS8/haswell/software/bzip2/1.0.8-GCCcore-8.3.0/man:/shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/man:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/man/common:/shared/easybuilder/CentOS8/haswell/software/binutils/2.32-GCCcore-8.3.0/share/man:/shared/easybuilder/CentOS8/haswell/software/zlib/1.2.11-GCCcore-8.3.0/share/man:/shared/easybuilder/CentOS8/haswell/software/GCCcore/8.3.0/share/man:/apps/slurm/default/share/man:/opt/openldap-2.4.49/share/man:/apps/modules/lmod/lmod/share/man:/opt/git/share/man"; | |
| os.environ["MODULEPATH"] = "/users/boegelbot/CentOS8/haswell/modules/all:/shared/easybuilder/CentOS8/haswell/modules/all:/apps/modules/modulefiles/Linux:/apps/modules/modulefiles/Core:/apps/modules/lmod/lmod/modulefiles/Core"; | |
| os.environ["__LMOD_REF_COUNT_PATH"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib/petsc/bin:1;/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/bin:1;/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/bin:1;/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0/bin:1;/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/bin:1;/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/bin:1;/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0/bin:1;/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0/bin:1;/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/bin:1;/shared/easybuilder/CentOS8/haswell/software/ncurses/6.1-GCCcore-8.3.0/bin:1;/shared/easybuilder/CentOS8/haswell/software/bzip2/1.0.8-GCCcore-8.3.0/bin:1;/shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/bin64:1;/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/mpi/intel64/bin:1;/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/bin/intel64:1;/shared/easybuilder/CentOS8/haswell/software/binutils/2.32-GCCcore-8.3.0/bin:1;/shared/easybuilder/CentOS8/haswell/software/GCCcore/8.3.0/bin:1;/users/boegelbot/.local/bin:2;/apps/slurm/default/bin:1;/opt/openldap-2.4.49/bin:1;/opt/openldap-2.4.49/sbin:1;/opt/openldap-2.4.49/libexec:1;/apps/modules/lua/luarocks/3.2.1/bin:1;/apps/modules/lua/5.3.5/bin:1;/opt/git/bin:1;/usr/local/bin:1;/usr/bin:1;/usr/local/sbin:1;/usr/sbin:1"; | |
| os.environ["PATH"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib/petsc/bin:/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/bin:/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/bin:/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0/bin:/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/bin:/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/bin:/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0/bin:/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0/bin:/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/bin:/shared/easybuilder/CentOS8/haswell/software/ncurses/6.1-GCCcore-8.3.0/bin:/shared/easybuilder/CentOS8/haswell/software/bzip2/1.0.8-GCCcore-8.3.0/bin:/shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/bin64:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/mpi/intel64/bin:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/bin/intel64:/shared/easybuilder/CentOS8/haswell/software/binutils/2.32-GCCcore-8.3.0/bin:/shared/easybuilder/CentOS8/haswell/software/GCCcore/8.3.0/bin:/users/boegelbot/.local/bin:/apps/slurm/default/bin:/opt/openldap-2.4.49/bin:/opt/openldap-2.4.49/sbin:/opt/openldap-2.4.49/libexec:/apps/modules/lua/luarocks/3.2.1/bin:/apps/modules/lua/5.3.5/bin:/opt/git/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin"; | |
| os.environ["PETSC_DIR"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4"; | |
| os.environ["__LMOD_REF_COUNT_PKG_CONFIG_PATH"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib/pkgconfig:1;/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/lib/pkgconfig:1;/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/lib/pkgconfig:1;/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0/lib/pkgconfig:1;/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0/lib/pkgconfig:1;/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/lib/pkgconfig:1;/shared/easybuilder/CentOS8/haswell/software/libreadline/8.0-GCCcore-8.3.0/lib/pkgconfig:1;/shared/easybuilder/CentOS8/haswell/software/bzip2/1.0.8-GCCcore-8.3.0/lib/pkgconfig:1;/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/bin/pkgconfig:1;/shared/easybuilder/CentOS8/haswell/software/zlib/1.2.11-GCCcore-8.3.0/lib/pkgconfig:1"; | |
| os.environ["PKG_CONFIG_PATH"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib/pkgconfig:/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/lib/pkgconfig:/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/lib/pkgconfig:/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0/lib/pkgconfig:/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0/lib/pkgconfig:/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/lib/pkgconfig:/shared/easybuilder/CentOS8/haswell/software/libreadline/8.0-GCCcore-8.3.0/lib/pkgconfig:/shared/easybuilder/CentOS8/haswell/software/bzip2/1.0.8-GCCcore-8.3.0/lib/pkgconfig:/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/bin/pkgconfig:/shared/easybuilder/CentOS8/haswell/software/zlib/1.2.11-GCCcore-8.3.0/lib/pkgconfig"; | |
| os.environ["__LMOD_REF_COUNT_PYTHONPATH"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib/petsc/bin:1;/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages:2;/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/easybuild/python:1"; | |
| os.environ["PYTHONPATH"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib/petsc/bin:/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages:/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/easybuild/python"; | |
| os.environ["__LMOD_REF_COUNT_XDG_DATA_DIRS"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/share:1;/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/share:1;/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/share:1;/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/share:1;/shared/easybuilder/CentOS8/haswell/software/GMP/6.1.2-GCCcore-8.3.0/share:1;/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0/share:1;/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0/share:1;/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/share:1;/shared/easybuilder/CentOS8/haswell/software/libreadline/8.0-GCCcore-8.3.0/share:1;/shared/easybuilder/CentOS8/haswell/software/ncurses/6.1-GCCcore-8.3.0/share:1;/shared/easybuilder/CentOS8/haswell/software/binutils/2.32-GCCcore-8.3.0/share:1;/shared/easybuilder/CentOS8/haswell/software/zlib/1.2.11-GCCcore-8.3.0/share:1;/shared/easybuilder/CentOS8/haswell/software/GCCcore/8.3.0/share:1"; | |
| os.environ["XDG_DATA_DIRS"] = "/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/share:/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/share:/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/share:/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/share:/shared/easybuilder/CentOS8/haswell/software/GMP/6.1.2-GCCcore-8.3.0/share:/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0/share:/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0/share:/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/share:/shared/easybuilder/CentOS8/haswell/software/libreadline/8.0-GCCcore-8.3.0/share:/shared/easybuilder/CentOS8/haswell/software/ncurses/6.1-GCCcore-8.3.0/share:/shared/easybuilder/CentOS8/haswell/software/binutils/2.32-GCCcore-8.3.0/share:/shared/easybuilder/CentOS8/haswell/software/zlib/1.2.11-GCCcore-8.3.0/share:/shared/easybuilder/CentOS8/haswell/software/GCCcore/8.3.0/share"; | |
| os.environ["__LMOD_REF_COUNT__LMFILES_"] = "/shared/easybuilder/CentOS8/haswell/modules/all/GCCcore/8.3.0.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/zlib/1.2.11-GCCcore-8.3.0.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/binutils/2.32-GCCcore-8.3.0.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/iccifort/2019.5.281.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/impi/2018.5.288-iccifort-2019.5.281.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/iimpi/2019b.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/imkl/2019.5.281-iimpi-2019b.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/intel/2019b.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/bzip2/1.0.8-GCCcore-8.3.0.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/ncurses/6.1-GCCcore-8.3.0.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/libreadline/8.0-GCCcore-8.3.0.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/Tcl/8.6.9-GCCcore-8.3.0.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/SQLite/3.29.0-GCCcore-8.3.0.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/XZ/5.2.4-GCCcore-8.3.0.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/GMP/6.1.2-GCCcore-8.3.0.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/libffi/3.2.1-GCCcore-8.3.0.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/Python/3.7.4-GCCcore-8.3.0.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/Boost/1.71.0-iimpi-2019b.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/METIS/5.1.0-GCCcore-8.3.0.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/SCOTCH/6.0.9-iimpi-2019b.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/MUMPS/5.2.1-intel-2019b-metis.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0.lua:1;/shared/easybuilder/CentOS8/haswell/modules/all/Hypre/2.18.2-intel-2019b.lua:1;/users/boegelbot/CentOS8/haswell/modules/all/PETSc/3.12.4-intel-2019b-Python-3.7.4.lua:1"; | |
| os.environ["_LMFILES_"] = "/shared/easybuilder/CentOS8/haswell/modules/all/GCCcore/8.3.0.lua:/shared/easybuilder/CentOS8/haswell/modules/all/zlib/1.2.11-GCCcore-8.3.0.lua:/shared/easybuilder/CentOS8/haswell/modules/all/binutils/2.32-GCCcore-8.3.0.lua:/shared/easybuilder/CentOS8/haswell/modules/all/iccifort/2019.5.281.lua:/shared/easybuilder/CentOS8/haswell/modules/all/impi/2018.5.288-iccifort-2019.5.281.lua:/shared/easybuilder/CentOS8/haswell/modules/all/iimpi/2019b.lua:/shared/easybuilder/CentOS8/haswell/modules/all/imkl/2019.5.281-iimpi-2019b.lua:/shared/easybuilder/CentOS8/haswell/modules/all/intel/2019b.lua:/shared/easybuilder/CentOS8/haswell/modules/all/bzip2/1.0.8-GCCcore-8.3.0.lua:/shared/easybuilder/CentOS8/haswell/modules/all/ncurses/6.1-GCCcore-8.3.0.lua:/shared/easybuilder/CentOS8/haswell/modules/all/libreadline/8.0-GCCcore-8.3.0.lua:/shared/easybuilder/CentOS8/haswell/modules/all/Tcl/8.6.9-GCCcore-8.3.0.lua:/shared/easybuilder/CentOS8/haswell/modules/all/SQLite/3.29.0-GCCcore-8.3.0.lua:/shared/easybuilder/CentOS8/haswell/modules/all/XZ/5.2.4-GCCcore-8.3.0.lua:/shared/easybuilder/CentOS8/haswell/modules/all/GMP/6.1.2-GCCcore-8.3.0.lua:/shared/easybuilder/CentOS8/haswell/modules/all/libffi/3.2.1-GCCcore-8.3.0.lua:/shared/easybuilder/CentOS8/haswell/modules/all/Python/3.7.4-GCCcore-8.3.0.lua:/shared/easybuilder/CentOS8/haswell/modules/all/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4.lua:/shared/easybuilder/CentOS8/haswell/modules/all/Boost/1.71.0-iimpi-2019b.lua:/shared/easybuilder/CentOS8/haswell/modules/all/METIS/5.1.0-GCCcore-8.3.0.lua:/shared/easybuilder/CentOS8/haswell/modules/all/SCOTCH/6.0.9-iimpi-2019b.lua:/shared/easybuilder/CentOS8/haswell/modules/all/MUMPS/5.2.1-intel-2019b-metis.lua:/shared/easybuilder/CentOS8/haswell/modules/all/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0.lua:/shared/easybuilder/CentOS8/haswell/modules/all/Hypre/2.18.2-intel-2019b.lua:/users/boegelbot/CentOS8/haswell/modules/all/PETSc/3.12.4-intel-2019b-Python-3.7.4.lua"; | |
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| os.environ["_ModuleTable012_"] = "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"; | |
| os.environ["_ModuleTable013_"] = "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"; | |
| os.environ["_ModuleTable014_"] = "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"; | |
| os.environ["_ModuleTable015_"] = "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"; | |
| os.environ["_ModuleTable016_"] = "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"; | |
| os.environ["_ModuleTable017_"] = "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"; | |
| os.environ["_ModuleTable018_"] = "bW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsfQ=="; | |
| os.environ["_ModuleTable_Sz_"] = "18"; | |
| _mlstatus = True | |
| ; stderr: | |
| == 2020-07-19 17:51:41,482 modules.py:1342 DEBUG Output found in stdout, seems like '/apps/modules/lmod/lmod/libexec/lmod python load PETSc/3.12.4-intel-2019b-Python-3.7.4' ran fine | |
| == 2020-07-19 17:51:41,484 modules.py:848 DEBUG Correcting paths in $LD_LIBRARY_PATH from ['/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib', '/shared/easybuilder/CentOS8/haswell/software/Hypre/2.18.2-intel-2019b/lib', '/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/lib', '/shared/easybuilder/CentOS8/haswell/software/MUMPS/5.2.1-intel-2019b-metis/lib', '/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/lib', '/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0/lib', '/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b/lib', '/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/lib', '/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib', '/apps/slurm/default/lib', '/opt/openldap-2.4.49/lib/lib', '/opt/git/lib'] to ['/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib', '/shared/easybuilder/CentOS8/haswell/software/Hypre/2.18.2-intel-2019b/lib', '/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/lib', '/shared/easybuilder/CentOS8/haswell/software/MUMPS/5.2.1-intel-2019b-metis/lib', '/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/lib', '/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0/lib', '/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b/lib', '/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/lib', '/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib', '/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/lib', '/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/lib64', '/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/lib', '/shared/easybuilder/CentOS8/haswell/software/GMP/6.1.2-GCCcore-8.3.0/lib', '/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0/lib', '/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0/lib', '/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/lib', '/shared/easybuilder/CentOS8/haswell/software/libreadline/8.0-GCCcore-8.3.0/lib', '/shared/easybuilder/CentOS8/haswell/software/ncurses/6.1-GCCcore-8.3.0/lib', '/shared/easybuilder/CentOS8/haswell/software/bzip2/1.0.8-GCCcore-8.3.0/lib', '/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64', '/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib/intel64', '/shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/lib64', '/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/debugger_2019/libipt/intel64/lib', '/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/daal/lib/intel64_lin', '/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/daal/lib/intel64_lin', '/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/tbb/lib/intel64/gcc4.4', '/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/mpi/intel64', '/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/mkl/lib/intel64', '/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/ipp/lib/intel64', '/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/compiler/lib/intel64', '/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/lib', '/shared/easybuilder/CentOS8/haswell/software/binutils/2.32-GCCcore-8.3.0/lib', '/shared/easybuilder/CentOS8/haswell/software/zlib/1.2.11-GCCcore-8.3.0/lib', '/shared/easybuilder/CentOS8/haswell/software/GCCcore/8.3.0/lib64', '/shared/easybuilder/CentOS8/haswell/software/GCCcore/8.3.0/lib', '/apps/slurm/default/lib', '/opt/openldap-2.4.49/lib/lib', '/opt/git/lib'] | |
| == 2020-07-19 17:51:41,484 environment.py:97 INFO Environment variable LD_LIBRARY_PATH set to /users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib:/shared/easybuilder/CentOS8/haswell/software/Hypre/2.18.2-intel-2019b/lib:/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/lib:/shared/easybuilder/CentOS8/haswell/software/MUMPS/5.2.1-intel-2019b-metis/lib:/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/lib:/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b/lib:/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/lib:/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib:/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/lib64:/shared/easybuilder/CentOS8/haswell/software/libffi/3.2.1-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/GMP/6.1.2-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/XZ/5.2.4-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/SQLite/3.29.0-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/Tcl/8.6.9-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/libreadline/8.0-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/ncurses/6.1-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/bzip2/1.0.8-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64:/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib/intel64:/shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/lib64:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/debugger_2019/libipt/intel64/lib:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/daal/lib/intel64_lin:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/daal/lib/intel64_lin:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/tbb/lib/intel64/gcc4.4:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/mpi/intel64:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/mkl/lib/intel64:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/ipp/lib/intel64:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/compiler/lib/intel64:/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/compilers_and_libraries_2019.5.281/linux/lib:/shared/easybuilder/CentOS8/haswell/software/binutils/2.32-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/zlib/1.2.11-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/GCCcore/8.3.0/lib64:/shared/easybuilder/CentOS8/haswell/software/GCCcore/8.3.0/lib:/apps/slurm/default/lib:/opt/openldap-2.4.49/lib/lib:/opt/git/lib (previous value: '/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib:/shared/easybuilder/CentOS8/haswell/software/Hypre/2.18.2-intel-2019b/lib:/shared/easybuilder/CentOS8/haswell/software/SuiteSparse/5.6.0-intel-2019b-METIS-5.1.0/lib:/shared/easybuilder/CentOS8/haswell/software/MUMPS/5.2.1-intel-2019b-metis/lib:/shared/easybuilder/CentOS8/haswell/software/SCOTCH/6.0.9-iimpi-2019b/lib:/shared/easybuilder/CentOS8/haswell/software/METIS/5.1.0-GCCcore-8.3.0/lib:/shared/easybuilder/CentOS8/haswell/software/Boost/1.71.0-iimpi-2019b/lib:/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib/python3.7/site-packages/numpy/core/lib:/shared/easybuilder/CentOS8/haswell/software/SciPy-bundle/2019.10-intel-2019b-Python-3.7.4/lib:/apps/slurm/default/lib:/opt/openldap-2.4.49/lib/lib:/opt/git/lib') | |
| == 2020-07-19 17:51:41,484 modules.py:848 DEBUG Correcting paths in $LD_PRELOAD from [''] to [] | |
| == 2020-07-19 17:51:41,484 environment.py:97 INFO Environment variable LD_PRELOAD set to (previous value: '') | |
| == 2020-07-19 17:51:41,484 modules.py:606 INFO Checking whether intel/2019b exists... | |
| == 2020-07-19 17:51:41,484 modules.py:614 INFO Module intel/2019b not found in list of available modules, checking via 'module show'... | |
| == 2020-07-19 17:51:41,484 modules.py:550 DEBUG Checking whether intel/2019b exists based on output of 'module show' | |
| == 2020-07-19 17:51:41,484 modules.py:696 DEBUG Found cached result for 'module show intel/2019b' with key '('MODULEPATH=/users/boegelbot/CentOS8/haswell/modules/all:/shared/easybuilder/CentOS8/haswell/modules/all:/apps/modules/modulefiles/Linux:/apps/modules/modulefiles/Core:/apps/modules/lmod/lmod/modulefiles/Core', 'lmod', 'intel/2019b')': -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| /shared/easybuilder/CentOS8/haswell/modules/all/intel/2019b.lua: | |
| -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| help([[ | |
| Description | |
| =========== | |
| Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL). | |
| More information | |
| ================ | |
| - Homepage: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#intel-toolchain | |
| ]]) | |
| whatis("Description: Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).") | |
| whatis("Homepage: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#intel-toolchain") | |
| whatis("URL: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#intel-toolchain") | |
| conflict("intel") | |
| load("GCCcore/8.3.0") | |
| load("binutils/2.32-GCCcore-8.3.0") | |
| load("iccifort/2019.5.281") | |
| load("impi/2018.5.288-iccifort-2019.5.281") | |
| load("imkl/2019.5.281-iimpi-2019b") | |
| setenv("EBROOTINTEL","/shared/easybuilder/CentOS8/haswell/software/intel/2019b") | |
| setenv("EBVERSIONINTEL","2019b") | |
| setenv("EBDEVELINTEL","/shared/easybuilder/CentOS8/haswell/software/intel/2019b/easybuild/intel-2019b-easybuild-devel") | |
| == 2020-07-19 17:51:41,485 modules.py:560 DEBUG Checking line '--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------' to determine whether intel/2019b exists... | |
| == 2020-07-19 17:51:41,485 modules.py:564 DEBUG Treating line '--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------' as whitespace, so skipping it | |
| == 2020-07-19 17:51:41,485 modules.py:560 DEBUG Checking line ' /shared/easybuilder/CentOS8/haswell/modules/all/intel/2019b.lua:' to determine whether intel/2019b exists... | |
| == 2020-07-19 17:51:41,485 modules.py:588 DEBUG Result for existence check of intel/2019b based on 'module show' output line ' /shared/easybuilder/CentOS8/haswell/modules/all/intel/2019b.lua:': True | |
| == 2020-07-19 17:51:41,485 modules.py:634 INFO Result for existence check of intel/2019b module: True | |
| == 2020-07-19 17:51:41,485 modules.py:696 DEBUG Found cached result for 'module show intel/2019b' with key '('MODULEPATH=/users/boegelbot/CentOS8/haswell/modules/all:/shared/easybuilder/CentOS8/haswell/modules/all:/apps/modules/modulefiles/Linux:/apps/modules/modulefiles/Core:/apps/modules/lmod/lmod/modulefiles/Core', 'lmod', 'intel/2019b')': -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| /shared/easybuilder/CentOS8/haswell/modules/all/intel/2019b.lua: | |
| -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |
| help([[ | |
| Description | |
| =========== | |
| Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL). | |
| More information | |
| ================ | |
| - Homepage: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#intel-toolchain | |
| ]]) | |
| whatis("Description: Compiler toolchain including Intel compilers, Intel MPI and Intel Math Kernel Library (MKL).") | |
| whatis("Homepage: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#intel-toolchain") | |
| whatis("URL: https://easybuild.readthedocs.io/en/master/Common-toolchains.html#intel-toolchain") | |
| conflict("intel") | |
| load("GCCcore/8.3.0") | |
| load("binutils/2.32-GCCcore-8.3.0") | |
| load("iccifort/2019.5.281") | |
| load("impi/2018.5.288-iccifort-2019.5.281") | |
| load("imkl/2019.5.281-iimpi-2019b") | |
| setenv("EBROOTINTEL","/shared/easybuilder/CentOS8/haswell/software/intel/2019b") | |
| setenv("EBVERSIONINTEL","2019b") | |
| setenv("EBDEVELINTEL","/shared/easybuilder/CentOS8/haswell/software/intel/2019b/easybuild/intel-2019b-easybuild-devel") | |
| == 2020-07-19 17:51:41,485 toolchain.py:687 DEBUG List of toolchain dependencies from toolchain module: ['GCCcore/8.3.0', 'binutils/2.32-GCCcore-8.3.0', 'iccifort/2019.5.281', 'impi/2018.5.288-iccifort-2019.5.281', 'imkl/2019.5.281-iimpi-2019b'] | |
| == 2020-07-19 17:51:41,486 toolchain.py:531 DEBUG Toolchain definition for {'name': 'intel', 'version': '2019b', 'toolchain': {'name': 'system', 'version': ''}, 'versionsuffix': '', 'parsed': True, 'hidden': False, 'full_mod_name': 'intel/2019b', 'short_mod_name': 'intel/2019b', 'system': True}: {'BLACS': ['imkl'], 'BLAS': ['imkl'], 'COMPILER': ['icc', 'ifort'], 'FFT': ['imkl'], 'LAPACK': ['imkl'], 'MPI': ['impi'], 'SCALAPACK': ['imkl']} | |
| == 2020-07-19 17:51:41,486 toolchain.py:700 DEBUG List of toolchain elements from toolchain definition: {'imkl', 'impi', 'icc', 'ifort'} | |
| == 2020-07-19 17:51:41,486 mns.py:169 DEBUG Checking whether 'GCCcore/8.3.0' is a module name for software with name 'imkl' via regex ^imkl(/\S+)?$: False | |
| == 2020-07-19 17:51:41,486 mns.py:169 DEBUG Checking whether 'binutils/2.32-GCCcore-8.3.0' is a module name for software with name 'imkl' via regex ^imkl(/\S+)?$: False | |
| == 2020-07-19 17:51:41,486 mns.py:169 DEBUG Checking whether 'iccifort/2019.5.281' is a module name for software with name 'imkl' via regex ^imkl(/\S+)?$: False | |
| == 2020-07-19 17:51:41,486 mns.py:169 DEBUG Checking whether 'impi/2018.5.288-iccifort-2019.5.281' is a module name for software with name 'imkl' via regex ^imkl(/\S+)?$: False | |
| == 2020-07-19 17:51:41,486 mns.py:169 DEBUG Checking whether 'imkl/2019.5.281-iimpi-2019b' is a module name for software with name 'imkl' via regex ^imkl(/\S+)?$: True | |
| == 2020-07-19 17:51:41,486 mns.py:169 DEBUG Checking whether 'GCCcore/8.3.0' is a module name for software with name 'impi' via regex ^impi(/\S+)?$: False | |
| == 2020-07-19 17:51:41,486 mns.py:169 DEBUG Checking whether 'binutils/2.32-GCCcore-8.3.0' is a module name for software with name 'impi' via regex ^impi(/\S+)?$: False | |
| == 2020-07-19 17:51:41,487 mns.py:169 DEBUG Checking whether 'iccifort/2019.5.281' is a module name for software with name 'impi' via regex ^impi(/\S+)?$: False | |
| == 2020-07-19 17:51:41,487 mns.py:169 DEBUG Checking whether 'impi/2018.5.288-iccifort-2019.5.281' is a module name for software with name 'impi' via regex ^impi(/\S+)?$: True | |
| == 2020-07-19 17:51:41,487 mns.py:169 DEBUG Checking whether 'GCCcore/8.3.0' is a module name for software with name 'icc' via regex ^icc(/\S+)?$: False | |
| == 2020-07-19 17:51:41,487 mns.py:169 DEBUG Checking whether 'binutils/2.32-GCCcore-8.3.0' is a module name for software with name 'icc' via regex ^icc(/\S+)?$: False | |
| == 2020-07-19 17:51:41,487 mns.py:169 DEBUG Checking whether 'iccifort/2019.5.281' is a module name for software with name 'icc' via regex ^icc(/\S+)?$: False | |
| == 2020-07-19 17:51:41,487 mns.py:169 DEBUG Checking whether 'impi/2018.5.288-iccifort-2019.5.281' is a module name for software with name 'icc' via regex ^icc(/\S+)?$: False | |
| == 2020-07-19 17:51:41,487 mns.py:169 DEBUG Checking whether 'imkl/2019.5.281-iimpi-2019b' is a module name for software with name 'icc' via regex ^icc(/\S+)?$: False | |
| == 2020-07-19 17:51:41,487 iccifort.py:76 INFO Checking whether icc is a toolchain component even though it is not a dependency | |
| == 2020-07-19 17:51:41,487 iccifort.py:79 INFO icc installation prefix: /shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281; version: 2019.5.281 | |
| == 2020-07-19 17:51:41,487 mns.py:169 DEBUG Checking whether 'GCCcore/8.3.0' is a module name for software with name 'ifort' via regex ^ifort(/\S+)?$: False | |
| == 2020-07-19 17:51:41,487 mns.py:169 DEBUG Checking whether 'binutils/2.32-GCCcore-8.3.0' is a module name for software with name 'ifort' via regex ^ifort(/\S+)?$: False | |
| == 2020-07-19 17:51:41,487 mns.py:169 DEBUG Checking whether 'iccifort/2019.5.281' is a module name for software with name 'ifort' via regex ^ifort(/\S+)?$: False | |
| == 2020-07-19 17:51:41,487 mns.py:169 DEBUG Checking whether 'impi/2018.5.288-iccifort-2019.5.281' is a module name for software with name 'ifort' via regex ^ifort(/\S+)?$: False | |
| == 2020-07-19 17:51:41,487 mns.py:169 DEBUG Checking whether 'imkl/2019.5.281-iimpi-2019b' is a module name for software with name 'ifort' via regex ^ifort(/\S+)?$: False | |
| == 2020-07-19 17:51:41,487 iccifort.py:76 INFO Checking whether ifort is a toolchain component even though it is not a dependency | |
| == 2020-07-19 17:51:41,488 iccifort.py:79 INFO ifort installation prefix: /shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281; version: 2019.5.281 | |
| == 2020-07-19 17:51:41,488 toolchain.py:703 INFO List of toolchain dependency modules and toolchain definition match! | |
| == 2020-07-19 17:51:41,488 toolchain.py:381 DEBUG get_software_version software version 2019.5.281 for icc was found in environment | |
| == 2020-07-19 17:51:41,488 toolchain.py:381 DEBUG get_software_version software version 2019.5.281 for ifort was found in environment | |
| == 2020-07-19 17:51:41,490 toolchain.py:372 DEBUG get_software_root software root /shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281 for icc was found in environment | |
| == 2020-07-19 17:51:41,490 toolchain.py:372 DEBUG get_software_root software root /shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281 for ifort was found in environment | |
| == 2020-07-19 17:51:41,491 toolchain.py:381 DEBUG get_software_version software version 2019.5.281 for icc was found in environment | |
| == 2020-07-19 17:51:41,491 toolchain.py:381 DEBUG get_software_version software version 2019.5.281 for ifort was found in environment | |
| == 2020-07-19 17:51:41,492 compiler.py:347 INFO _set_optimal_architecture: using xHost as optarch for x86_64. | |
| == 2020-07-19 17:51:41,495 mpi.py:219 DEBUG usempi set: defining CC_SEQ as icc | |
| == 2020-07-19 17:51:41,495 mpi.py:222 DEBUG usempi set: switching CC value icc for MPICC value mpiicc | |
| == 2020-07-19 17:51:41,496 mpi.py:219 DEBUG usempi set: defining CXX_SEQ as icpc | |
| == 2020-07-19 17:51:41,496 mpi.py:222 DEBUG usempi set: switching CXX value icpc for MPICXX value mpiicpc | |
| == 2020-07-19 17:51:41,496 mpi.py:219 DEBUG usempi set: defining F77_SEQ as ifort | |
| == 2020-07-19 17:51:41,497 mpi.py:222 DEBUG usempi set: switching F77 value ifort for MPIF77 value mpiifort | |
| == 2020-07-19 17:51:41,497 mpi.py:219 DEBUG usempi set: defining F90_SEQ as ifort | |
| == 2020-07-19 17:51:41,497 mpi.py:222 DEBUG usempi set: switching F90 value ifort for MPIF90 value mpiifort | |
| == 2020-07-19 17:51:41,498 mpi.py:219 DEBUG usempi set: defining FC_SEQ as ifort | |
| == 2020-07-19 17:51:41,498 mpi.py:222 DEBUG usempi set: switching FC value ifort for MPIFC value mpiifort | |
| == 2020-07-19 17:51:41,498 toolchain.py:372 DEBUG get_software_root software root /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281 for impi was found in environment | |
| == 2020-07-19 17:51:41,500 toolchain.py:372 DEBUG get_software_root software root /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281 for impi was found in environment | |
| == 2020-07-19 17:51:41,502 toolchain.py:381 DEBUG get_software_version software version 2019.5.281 for imkl was found in environment | |
| == 2020-07-19 17:51:41,503 toolchain.py:381 DEBUG get_software_version software version 2019.5.281 for imkl was found in environment | |
| == 2020-07-19 17:51:41,503 toolchain.py:372 DEBUG get_software_root software root /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b for imkl was found in environment | |
| == 2020-07-19 17:51:41,504 toolchain.py:372 DEBUG get_software_root software root /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b for imkl was found in environment | |
| == 2020-07-19 17:51:41,504 variables.py:201 WARNING flags_for_subdirs: directory /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/include was not found | |
| == 2020-07-19 17:51:41,504 variables.py:201 WARNING flags_for_subdirs: directory /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib64 was not found | |
| == 2020-07-19 17:51:41,507 toolchain.py:372 DEBUG get_software_root software root /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b for imkl was found in environment | |
| == 2020-07-19 17:51:41,507 variables.py:201 WARNING flags_for_subdirs: directory /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/include was not found | |
| == 2020-07-19 17:51:41,507 variables.py:201 WARNING flags_for_subdirs: directory /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib64 was not found | |
| == 2020-07-19 17:51:41,508 toolchain.py:372 DEBUG get_software_root software root /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b for imkl was found in environment | |
| == 2020-07-19 17:51:41,508 toolchain.py:372 DEBUG get_software_root software root /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b for imkl was found in environment | |
| == 2020-07-19 17:51:41,508 variables.py:201 WARNING flags_for_subdirs: directory /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/include was not found | |
| == 2020-07-19 17:51:41,508 variables.py:201 WARNING flags_for_subdirs: directory /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib64 was not found | |
| == 2020-07-19 17:51:41,508 toolchain.py:381 DEBUG get_software_version software version 2019.5.281 for imkl was found in environment | |
| == 2020-07-19 17:51:41,510 toolchain.py:372 DEBUG get_software_root software root /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b for imkl was found in environment | |
| == 2020-07-19 17:51:41,510 toolchain.py:372 DEBUG get_software_root software root /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b for imkl was found in environment | |
| == 2020-07-19 17:51:41,510 variables.py:201 WARNING flags_for_subdirs: directory /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/include was not found | |
| == 2020-07-19 17:51:41,511 variables.py:201 WARNING flags_for_subdirs: directory /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib64 was not found | |
| == 2020-07-19 17:51:41,511 intelfftw.py:86 DEBUG fftw_libs ['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64'] | |
| == 2020-07-19 17:51:41,511 intelfftw.py:88 DEBUG fftw_libs ['fftw3xc_intel', 'fftw3x_cdft_lp64', 'mkl_cdft_core', 'mkl_blacs_intelmpi_lp64', 'mkl_intel_lp64', 'mkl_sequential', 'mkl_core'] | |
| == 2020-07-19 17:51:41,546 toolchain.py:372 DEBUG get_software_root software root /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b for imkl was found in environment | |
| == 2020-07-19 17:51:41,547 toolchain.py:372 DEBUG get_software_root software root /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b for imkl was found in environment | |
| == 2020-07-19 17:51:41,548 variables.py:201 WARNING flags_for_subdirs: directory /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/include was not found | |
| == 2020-07-19 17:51:41,548 variables.py:201 WARNING flags_for_subdirs: directory /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib64 was not found | |
| == 2020-07-19 17:51:41,548 toolchain.py:799 DEBUG prepare: set additional variables onlymod=False | |
| == 2020-07-19 17:51:41,549 toolchain.py:372 DEBUG get_software_root software root /shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0 for Python was found in environment | |
| == 2020-07-19 17:51:41,549 toolchain.py:372 DEBUG get_software_root software root /users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4 for PETSc was found in environment | |
| == 2020-07-19 17:51:41,549 variables.py:201 WARNING flags_for_subdirs: directory /shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/lib64 was not found | |
| == 2020-07-19 17:51:41,550 variables.py:201 WARNING flags_for_subdirs: directory /users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib64 was not found | |
| == 2020-07-19 17:51:41,554 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable BLACS_INC_DIR to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include | |
| == 2020-07-19 17:51:41,555 environment.py:97 INFO Environment variable BLACS_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include (previously undefined) | |
| == 2020-07-19 17:51:41,555 environment.py:97 INFO Environment variable EBVARBLACS_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include (previously undefined) | |
| == 2020-07-19 17:51:41,555 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable BLACS_LIB_DIR to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 | |
| == 2020-07-19 17:51:41,555 environment.py:97 INFO Environment variable BLACS_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,555 environment.py:97 INFO Environment variable EBVARBLACS_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,555 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable BLACS_MT_STATIC_LIBS to libmkl_blacs_intelmpi_lp64.a | |
| == 2020-07-19 17:51:41,555 environment.py:97 INFO Environment variable BLACS_MT_STATIC_LIBS set to libmkl_blacs_intelmpi_lp64.a (previously undefined) | |
| == 2020-07-19 17:51:41,555 environment.py:97 INFO Environment variable EBVARBLACS_MT_STATIC_LIBS set to libmkl_blacs_intelmpi_lp64.a (previously undefined) | |
| == 2020-07-19 17:51:41,555 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable BLACS_STATIC_LIBS to libmkl_blacs_intelmpi_lp64.a | |
| == 2020-07-19 17:51:41,555 environment.py:97 INFO Environment variable BLACS_STATIC_LIBS set to libmkl_blacs_intelmpi_lp64.a (previously undefined) | |
| == 2020-07-19 17:51:41,555 environment.py:97 INFO Environment variable EBVARBLACS_STATIC_LIBS set to libmkl_blacs_intelmpi_lp64.a (previously undefined) | |
| == 2020-07-19 17:51:41,555 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable BLAS_INC_DIR to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include | |
| == 2020-07-19 17:51:41,556 environment.py:97 INFO Environment variable BLAS_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include (previously undefined) | |
| == 2020-07-19 17:51:41,556 environment.py:97 INFO Environment variable EBVARBLAS_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include (previously undefined) | |
| == 2020-07-19 17:51:41,556 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_INC_DIR to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include | |
| == 2020-07-19 17:51:41,556 environment.py:97 INFO Environment variable BLAS_LAPACK_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include (previously undefined) | |
| == 2020-07-19 17:51:41,556 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include (previously undefined) | |
| == 2020-07-19 17:51:41,556 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_LIB_DIR to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 | |
| == 2020-07-19 17:51:41,556 environment.py:97 INFO Environment variable BLAS_LAPACK_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,556 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,556 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_MT_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a | |
| == 2020-07-19 17:51:41,556 environment.py:97 INFO Environment variable BLAS_LAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
| == 2020-07-19 17:51:41,556 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
| == 2020-07-19 17:51:41,556 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable BLAS_LAPACK_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a | |
| == 2020-07-19 17:51:41,556 environment.py:97 INFO Environment variable BLAS_LAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
| == 2020-07-19 17:51:41,556 environment.py:97 INFO Environment variable EBVARBLAS_LAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
| == 2020-07-19 17:51:41,557 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable BLAS_LIB_DIR to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 | |
| == 2020-07-19 17:51:41,557 environment.py:97 INFO Environment variable BLAS_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,557 environment.py:97 INFO Environment variable EBVARBLAS_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,557 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable BLAS_MT_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a | |
| == 2020-07-19 17:51:41,557 environment.py:97 INFO Environment variable BLAS_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
| == 2020-07-19 17:51:41,557 environment.py:97 INFO Environment variable EBVARBLAS_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
| == 2020-07-19 17:51:41,557 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable BLAS_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a | |
| == 2020-07-19 17:51:41,557 environment.py:97 INFO Environment variable BLAS_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
| == 2020-07-19 17:51:41,557 environment.py:97 INFO Environment variable EBVARBLAS_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
| == 2020-07-19 17:51:41,557 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable CC to mpiicc | |
| == 2020-07-19 17:51:41,557 environment.py:97 INFO Environment variable CC set to mpiicc (previously undefined) | |
| == 2020-07-19 17:51:41,557 environment.py:97 INFO Environment variable EBVARCC set to mpiicc (previously undefined) | |
| == 2020-07-19 17:51:41,557 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable CC_SEQ to icc | |
| == 2020-07-19 17:51:41,557 environment.py:97 INFO Environment variable CC_SEQ set to icc (previously undefined) | |
| == 2020-07-19 17:51:41,558 environment.py:97 INFO Environment variable EBVARCC_SEQ set to icc (previously undefined) | |
| == 2020-07-19 17:51:41,558 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable CFLAGS to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi | |
| == 2020-07-19 17:51:41,558 environment.py:97 INFO Environment variable CFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi (previously undefined) | |
| == 2020-07-19 17:51:41,558 environment.py:97 INFO Environment variable EBVARCFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi (previously undefined) | |
| == 2020-07-19 17:51:41,558 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable CPPFLAGS to -I/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/include -I/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/include -I/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include | |
| == 2020-07-19 17:51:41,558 environment.py:97 INFO Environment variable CPPFLAGS set to -I/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/include -I/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/include -I/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include (previously undefined) | |
| == 2020-07-19 17:51:41,558 environment.py:97 INFO Environment variable EBVARCPPFLAGS set to -I/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/include -I/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/include -I/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include (previously undefined) | |
| == 2020-07-19 17:51:41,558 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable CXX to mpiicpc | |
| == 2020-07-19 17:51:41,558 environment.py:97 INFO Environment variable CXX set to mpiicpc (previously undefined) | |
| == 2020-07-19 17:51:41,558 environment.py:97 INFO Environment variable EBVARCXX set to mpiicpc (previously undefined) | |
| == 2020-07-19 17:51:41,558 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable CXXFLAGS to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi | |
| == 2020-07-19 17:51:41,558 environment.py:97 INFO Environment variable CXXFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi (previously undefined) | |
| == 2020-07-19 17:51:41,558 environment.py:97 INFO Environment variable EBVARCXXFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi (previously undefined) | |
| == 2020-07-19 17:51:41,559 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable CXX_SEQ to icpc | |
| == 2020-07-19 17:51:41,559 environment.py:97 INFO Environment variable CXX_SEQ set to icpc (previously undefined) | |
| == 2020-07-19 17:51:41,559 environment.py:97 INFO Environment variable EBVARCXX_SEQ set to icpc (previously undefined) | |
| == 2020-07-19 17:51:41,559 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable F77 to mpiifort | |
| == 2020-07-19 17:51:41,559 environment.py:97 INFO Environment variable F77 set to mpiifort (previously undefined) | |
| == 2020-07-19 17:51:41,559 environment.py:97 INFO Environment variable EBVARF77 set to mpiifort (previously undefined) | |
| == 2020-07-19 17:51:41,559 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable F77_SEQ to ifort | |
| == 2020-07-19 17:51:41,559 environment.py:97 INFO Environment variable F77_SEQ set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,559 environment.py:97 INFO Environment variable EBVARF77_SEQ set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,559 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable F90 to mpiifort | |
| == 2020-07-19 17:51:41,559 environment.py:97 INFO Environment variable F90 set to mpiifort (previously undefined) | |
| == 2020-07-19 17:51:41,559 environment.py:97 INFO Environment variable EBVARF90 set to mpiifort (previously undefined) | |
| == 2020-07-19 17:51:41,559 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable F90FLAGS to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi | |
| == 2020-07-19 17:51:41,559 environment.py:97 INFO Environment variable F90FLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi (previously undefined) | |
| == 2020-07-19 17:51:41,560 environment.py:97 INFO Environment variable EBVARF90FLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi (previously undefined) | |
| == 2020-07-19 17:51:41,560 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable F90_SEQ to ifort | |
| == 2020-07-19 17:51:41,560 environment.py:97 INFO Environment variable F90_SEQ set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,560 environment.py:97 INFO Environment variable EBVARF90_SEQ set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,560 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FC to mpiifort | |
| == 2020-07-19 17:51:41,560 environment.py:97 INFO Environment variable FC set to mpiifort (previously undefined) | |
| == 2020-07-19 17:51:41,560 environment.py:97 INFO Environment variable EBVARFC set to mpiifort (previously undefined) | |
| == 2020-07-19 17:51:41,560 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FCFLAGS to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi | |
| == 2020-07-19 17:51:41,560 environment.py:97 INFO Environment variable FCFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi (previously undefined) | |
| == 2020-07-19 17:51:41,560 environment.py:97 INFO Environment variable EBVARFCFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi (previously undefined) | |
| == 2020-07-19 17:51:41,560 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FC_SEQ to ifort | |
| == 2020-07-19 17:51:41,560 environment.py:97 INFO Environment variable FC_SEQ set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,560 environment.py:97 INFO Environment variable EBVARFC_SEQ set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,560 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FFLAGS to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi | |
| == 2020-07-19 17:51:41,561 environment.py:97 INFO Environment variable FFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi (previously undefined) | |
| == 2020-07-19 17:51:41,561 environment.py:97 INFO Environment variable EBVARFFLAGS set to -O2 -xHost -ftz -fp-speculation=safe -fp-model source -fopenmp -mt_mpi (previously undefined) | |
| == 2020-07-19 17:51:41,561 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FFTW_INC_DIR to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include/fftw | |
| == 2020-07-19 17:51:41,561 environment.py:97 INFO Environment variable FFTW_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include/fftw (previously undefined) | |
| == 2020-07-19 17:51:41,561 environment.py:97 INFO Environment variable EBVARFFTW_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include/fftw (previously undefined) | |
| == 2020-07-19 17:51:41,561 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FFTW_LIB_DIR to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 | |
| == 2020-07-19 17:51:41,561 environment.py:97 INFO Environment variable FFTW_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,561 environment.py:97 INFO Environment variable EBVARFFTW_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,561 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a | |
| == 2020-07-19 17:51:41,561 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS set to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
| == 2020-07-19 17:51:41,561 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS set to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
| == 2020-07-19 17:51:41,561 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FFTW_STATIC_LIBS_MT to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a | |
| == 2020-07-19 17:51:41,561 environment.py:97 INFO Environment variable FFTW_STATIC_LIBS_MT set to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
| == 2020-07-19 17:51:41,562 environment.py:97 INFO Environment variable EBVARFFTW_STATIC_LIBS_MT set to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
| == 2020-07-19 17:51:41,562 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FFT_INC_DIR to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include/fftw | |
| == 2020-07-19 17:51:41,562 environment.py:97 INFO Environment variable FFT_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include/fftw (previously undefined) | |
| == 2020-07-19 17:51:41,562 environment.py:97 INFO Environment variable EBVARFFT_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include/fftw (previously undefined) | |
| == 2020-07-19 17:51:41,562 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FFT_LIB_DIR to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 | |
| == 2020-07-19 17:51:41,562 environment.py:97 INFO Environment variable FFT_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,562 environment.py:97 INFO Environment variable EBVARFFT_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,562 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a | |
| == 2020-07-19 17:51:41,562 environment.py:97 INFO Environment variable FFT_STATIC_LIBS set to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
| == 2020-07-19 17:51:41,562 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS set to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
| == 2020-07-19 17:51:41,562 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable FFT_STATIC_LIBS_MT to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a | |
| == 2020-07-19 17:51:41,562 environment.py:97 INFO Environment variable FFT_STATIC_LIBS_MT set to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
| == 2020-07-19 17:51:41,562 environment.py:97 INFO Environment variable EBVARFFT_STATIC_LIBS_MT set to libfftw3xc_intel.a,libfftw3x_cdft_lp64.a,libmkl_cdft_core.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
| == 2020-07-19 17:51:41,562 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable I_MPI_CC to icc | |
| == 2020-07-19 17:51:41,563 environment.py:97 INFO Environment variable I_MPI_CC set to icc (previously undefined) | |
| == 2020-07-19 17:51:41,563 environment.py:97 INFO Environment variable EBVARI_MPI_CC set to icc (previously undefined) | |
| == 2020-07-19 17:51:41,563 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable I_MPI_CXX to icpc | |
| == 2020-07-19 17:51:41,563 environment.py:97 INFO Environment variable I_MPI_CXX set to icpc (previously undefined) | |
| == 2020-07-19 17:51:41,563 environment.py:97 INFO Environment variable EBVARI_MPI_CXX set to icpc (previously undefined) | |
| == 2020-07-19 17:51:41,563 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable I_MPI_F77 to ifort | |
| == 2020-07-19 17:51:41,563 environment.py:97 INFO Environment variable I_MPI_F77 set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,563 environment.py:97 INFO Environment variable EBVARI_MPI_F77 set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,563 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable I_MPI_F90 to ifort | |
| == 2020-07-19 17:51:41,563 environment.py:97 INFO Environment variable I_MPI_F90 set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,563 environment.py:97 INFO Environment variable EBVARI_MPI_F90 set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,563 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable I_MPI_FC to ifort | |
| == 2020-07-19 17:51:41,563 environment.py:97 INFO Environment variable I_MPI_FC set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,563 environment.py:97 INFO Environment variable EBVARI_MPI_FC set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,564 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LAPACK_INC_DIR to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include | |
| == 2020-07-19 17:51:41,564 environment.py:97 INFO Environment variable LAPACK_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include (previously undefined) | |
| == 2020-07-19 17:51:41,564 environment.py:97 INFO Environment variable EBVARLAPACK_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include (previously undefined) | |
| == 2020-07-19 17:51:41,564 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LAPACK_LIB_DIR to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 | |
| == 2020-07-19 17:51:41,564 environment.py:97 INFO Environment variable LAPACK_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,564 environment.py:97 INFO Environment variable EBVARLAPACK_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,564 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LAPACK_MT_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a | |
| == 2020-07-19 17:51:41,564 environment.py:97 INFO Environment variable LAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
| == 2020-07-19 17:51:41,564 environment.py:97 INFO Environment variable EBVARLAPACK_MT_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
| == 2020-07-19 17:51:41,564 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LAPACK_STATIC_LIBS to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a | |
| == 2020-07-19 17:51:41,564 environment.py:97 INFO Environment variable LAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
| == 2020-07-19 17:51:41,564 environment.py:97 INFO Environment variable EBVARLAPACK_STATIC_LIBS set to libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
| == 2020-07-19 17:51:41,564 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LDFLAGS to -L/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib -L/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/lib -L/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib -L/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib -L/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 -L/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib/intel64 -L/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/lib/intel64 | |
| == 2020-07-19 17:51:41,565 environment.py:97 INFO Environment variable LDFLAGS set to -L/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib -L/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/lib -L/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib -L/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib -L/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 -L/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib/intel64 -L/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,565 environment.py:97 INFO Environment variable EBVARLDFLAGS set to -L/users/boegelbot/CentOS8/haswell/software/PETSc/3.12.4-intel-2019b-Python-3.7.4/lib -L/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0/lib -L/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib -L/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib -L/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 -L/shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/lib/intel64 -L/shared/easybuilder/CentOS8/haswell/software/iccifort/2019.5.281/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,565 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBBLACS to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic | |
| == 2020-07-19 17:51:41,565 environment.py:97 INFO Environment variable LIBBLACS set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,565 environment.py:97 INFO Environment variable EBVARLIBBLACS set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,565 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBBLACS_MT to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic | |
| == 2020-07-19 17:51:41,565 environment.py:97 INFO Environment variable LIBBLACS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,565 environment.py:97 INFO Environment variable EBVARLIBBLACS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_blacs_intelmpi_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,565 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBBLAS to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic | |
| == 2020-07-19 17:51:41,565 environment.py:97 INFO Environment variable LIBBLAS set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,565 environment.py:97 INFO Environment variable EBVARLIBBLAS set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,565 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBBLAS_MT to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread | |
| == 2020-07-19 17:51:41,565 environment.py:97 INFO Environment variable LIBBLAS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
| == 2020-07-19 17:51:41,565 environment.py:97 INFO Environment variable EBVARLIBBLAS_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
| == 2020-07-19 17:51:41,566 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBFFT to -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel -lfftw3x_cdft_lp64 -lmkl_cdft_core -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic | |
| == 2020-07-19 17:51:41,566 environment.py:97 INFO Environment variable LIBFFT set to -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel -lfftw3x_cdft_lp64 -lmkl_cdft_core -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,566 environment.py:97 INFO Environment variable EBVARLIBFFT set to -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel -lfftw3x_cdft_lp64 -lmkl_cdft_core -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,566 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBFFT_MT to -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel -lfftw3x_cdft_lp64 -lmkl_cdft_core -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread | |
| == 2020-07-19 17:51:41,566 environment.py:97 INFO Environment variable LIBFFT_MT set to -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel -lfftw3x_cdft_lp64 -lmkl_cdft_core -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
| == 2020-07-19 17:51:41,566 environment.py:97 INFO Environment variable EBVARLIBFFT_MT set to -Wl,-Bstatic -Wl,--start-group -lfftw3xc_intel -lfftw3x_cdft_lp64 -lmkl_cdft_core -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
| == 2020-07-19 17:51:41,566 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBLAPACK to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic | |
| == 2020-07-19 17:51:41,566 environment.py:97 INFO Environment variable LIBLAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,566 environment.py:97 INFO Environment variable EBVARLIBLAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,566 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread | |
| == 2020-07-19 17:51:41,566 environment.py:97 INFO Environment variable LIBLAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
| == 2020-07-19 17:51:41,566 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
| == 2020-07-19 17:51:41,566 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBLAPACK_MT_ONLY to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread | |
| == 2020-07-19 17:51:41,567 environment.py:97 INFO Environment variable LIBLAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
| == 2020-07-19 17:51:41,567 environment.py:97 INFO Environment variable EBVARLIBLAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
| == 2020-07-19 17:51:41,567 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBLAPACK_ONLY to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic | |
| == 2020-07-19 17:51:41,567 environment.py:97 INFO Environment variable LIBLAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,567 environment.py:97 INFO Environment variable EBVARLIBLAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,567 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBS to -liomp5 -lpthread | |
| == 2020-07-19 17:51:41,567 environment.py:97 INFO Environment variable LIBS set to -liomp5 -lpthread (previously undefined) | |
| == 2020-07-19 17:51:41,567 environment.py:97 INFO Environment variable EBVARLIBS set to -liomp5 -lpthread (previously undefined) | |
| == 2020-07-19 17:51:41,567 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic | |
| == 2020-07-19 17:51:41,567 environment.py:97 INFO Environment variable LIBSCALAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,567 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_sequential -lmkl_core -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,567 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread | |
| == 2020-07-19 17:51:41,567 environment.py:97 INFO Environment variable LIBSCALAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
| == 2020-07-19 17:51:41,567 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -lmkl_blacs_intelmpi_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
| == 2020-07-19 17:51:41,568 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_MT_ONLY to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread | |
| == 2020-07-19 17:51:41,568 environment.py:97 INFO Environment variable LIBSCALAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
| == 2020-07-19 17:51:41,568 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_MT_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic -liomp5 -lpthread (previously undefined) | |
| == 2020-07-19 17:51:41,568 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable LIBSCALAPACK_ONLY to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic | |
| == 2020-07-19 17:51:41,568 environment.py:97 INFO Environment variable LIBSCALAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,568 environment.py:97 INFO Environment variable EBVARLIBSCALAPACK_ONLY set to -Wl,-Bstatic -Wl,--start-group -lmkl_scalapack_lp64 -Wl,--end-group -Wl,-Bdynamic (previously undefined) | |
| == 2020-07-19 17:51:41,568 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable MPICC to mpiicc | |
| == 2020-07-19 17:51:41,568 environment.py:97 INFO Environment variable MPICC set to mpiicc (previously undefined) | |
| == 2020-07-19 17:51:41,568 environment.py:97 INFO Environment variable EBVARMPICC set to mpiicc (previously undefined) | |
| == 2020-07-19 17:51:41,568 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable MPICH_CC to icc | |
| == 2020-07-19 17:51:41,568 environment.py:97 INFO Environment variable MPICH_CC set to icc (previously undefined) | |
| == 2020-07-19 17:51:41,568 environment.py:97 INFO Environment variable EBVARMPICH_CC set to icc (previously undefined) | |
| == 2020-07-19 17:51:41,568 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable MPICH_CXX to icpc | |
| == 2020-07-19 17:51:41,568 environment.py:97 INFO Environment variable MPICH_CXX set to icpc (previously undefined) | |
| == 2020-07-19 17:51:41,569 environment.py:97 INFO Environment variable EBVARMPICH_CXX set to icpc (previously undefined) | |
| == 2020-07-19 17:51:41,569 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable MPICH_F77 to ifort | |
| == 2020-07-19 17:51:41,569 environment.py:97 INFO Environment variable MPICH_F77 set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,569 environment.py:97 INFO Environment variable EBVARMPICH_F77 set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,569 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable MPICH_F90 to ifort | |
| == 2020-07-19 17:51:41,569 environment.py:97 INFO Environment variable MPICH_F90 set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,569 environment.py:97 INFO Environment variable EBVARMPICH_F90 set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,569 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable MPICH_FC to ifort | |
| == 2020-07-19 17:51:41,569 environment.py:97 INFO Environment variable MPICH_FC set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,569 environment.py:97 INFO Environment variable EBVARMPICH_FC set to ifort (previously undefined) | |
| == 2020-07-19 17:51:41,569 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable MPICXX to mpiicpc | |
| == 2020-07-19 17:51:41,569 environment.py:97 INFO Environment variable MPICXX set to mpiicpc (previously undefined) | |
| == 2020-07-19 17:51:41,569 environment.py:97 INFO Environment variable EBVARMPICXX set to mpiicpc (previously undefined) | |
| == 2020-07-19 17:51:41,569 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable MPIF77 to mpiifort | |
| == 2020-07-19 17:51:41,570 environment.py:97 INFO Environment variable MPIF77 set to mpiifort (previously undefined) | |
| == 2020-07-19 17:51:41,570 environment.py:97 INFO Environment variable EBVARMPIF77 set to mpiifort (previously undefined) | |
| == 2020-07-19 17:51:41,570 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable MPIF90 to mpiifort | |
| == 2020-07-19 17:51:41,570 environment.py:97 INFO Environment variable MPIF90 set to mpiifort (previously undefined) | |
| == 2020-07-19 17:51:41,570 environment.py:97 INFO Environment variable EBVARMPIF90 set to mpiifort (previously undefined) | |
| == 2020-07-19 17:51:41,570 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable MPIFC to mpiifort | |
| == 2020-07-19 17:51:41,570 environment.py:97 INFO Environment variable MPIFC set to mpiifort (previously undefined) | |
| == 2020-07-19 17:51:41,570 environment.py:97 INFO Environment variable EBVARMPIFC set to mpiifort (previously undefined) | |
| == 2020-07-19 17:51:41,570 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable MPI_INC_DIR to /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/intel64/include /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/include64 | |
| == 2020-07-19 17:51:41,570 environment.py:97 INFO Environment variable MPI_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/intel64/include /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/include64 (previously undefined) | |
| == 2020-07-19 17:51:41,570 environment.py:97 INFO Environment variable EBVARMPI_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/intel64/include /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/include64 (previously undefined) | |
| == 2020-07-19 17:51:41,570 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/intel64/lib/release /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/lib64 | |
| == 2020-07-19 17:51:41,570 environment.py:97 INFO Environment variable MPI_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/intel64/lib/release /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/lib64 (previously undefined) | |
| == 2020-07-19 17:51:41,571 environment.py:97 INFO Environment variable EBVARMPI_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/intel64/lib/release /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/lib64 (previously undefined) | |
| == 2020-07-19 17:51:41,571 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/intel64/lib/release/libmpi.so /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/lib64/libmpi.so | |
| == 2020-07-19 17:51:41,571 environment.py:97 INFO Environment variable MPI_LIB_SHARED set to /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/intel64/lib/release/libmpi.so /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/lib64/libmpi.so (previously undefined) | |
| == 2020-07-19 17:51:41,571 environment.py:97 INFO Environment variable EBVARMPI_LIB_SHARED set to /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/intel64/lib/release/libmpi.so /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/lib64/libmpi.so (previously undefined) | |
| == 2020-07-19 17:51:41,571 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/intel64/lib/release/libmpi.a /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/lib64/libmpi.a | |
| == 2020-07-19 17:51:41,571 environment.py:97 INFO Environment variable MPI_LIB_STATIC set to /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/intel64/lib/release/libmpi.a /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/lib64/libmpi.a (previously undefined) | |
| == 2020-07-19 17:51:41,571 environment.py:97 INFO Environment variable EBVARMPI_LIB_STATIC set to /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/intel64/lib/release/libmpi.a /shared/easybuilder/CentOS8/haswell/software/impi/2018.5.288-iccifort-2019.5.281/lib64/libmpi.a (previously undefined) | |
| == 2020-07-19 17:51:41,571 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -xHost | |
| == 2020-07-19 17:51:41,571 environment.py:97 INFO Environment variable OPTFLAGS set to -O2 -xHost (previously undefined) | |
| == 2020-07-19 17:51:41,571 environment.py:97 INFO Environment variable EBVAROPTFLAGS set to -O2 -xHost (previously undefined) | |
| == 2020-07-19 17:51:41,571 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -ftz -fp-speculation=safe -fp-model source | |
| == 2020-07-19 17:51:41,571 environment.py:97 INFO Environment variable PRECFLAGS set to -ftz -fp-speculation=safe -fp-model source (previously undefined) | |
| == 2020-07-19 17:51:41,571 environment.py:97 INFO Environment variable EBVARPRECFLAGS set to -ftz -fp-speculation=safe -fp-model source (previously undefined) | |
| == 2020-07-19 17:51:41,571 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include | |
| == 2020-07-19 17:51:41,572 environment.py:97 INFO Environment variable SCALAPACK_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include (previously undefined) | |
| == 2020-07-19 17:51:41,572 environment.py:97 INFO Environment variable EBVARSCALAPACK_INC_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/include (previously undefined) | |
| == 2020-07-19 17:51:41,572 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 | |
| == 2020-07-19 17:51:41,572 environment.py:97 INFO Environment variable SCALAPACK_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,572 environment.py:97 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /shared/easybuilder/CentOS8/haswell/software/imkl/2019.5.281-iimpi-2019b/mkl/lib/intel64 (previously undefined) | |
| == 2020-07-19 17:51:41,572 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a | |
| == 2020-07-19 17:51:41,572 environment.py:97 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
| == 2020-07-19 17:51:41,572 environment.py:97 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_intel_thread.a,libmkl_core.a,libiomp5.a,libpthread.a (previously undefined) | |
| == 2020-07-19 17:51:41,572 toolchain.py:1019 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a | |
| == 2020-07-19 17:51:41,572 environment.py:97 INFO Environment variable SCALAPACK_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
| == 2020-07-19 17:51:41,572 environment.py:97 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libmkl_scalapack_lp64.a,libmkl_blacs_intelmpi_lp64.a,libmkl_intel_lp64.a,libmkl_sequential.a,libmkl_core.a (previously undefined) | |
| == 2020-07-19 17:51:41,572 easyblock.py:1610 INFO Using /tmp/boegelbot/SLEPc/3.12.2/intel-2019b-Python-3.7.4/slepc-3.12.2/ as start dir | |
| == 2020-07-19 17:51:41,573 easyblock.py:1613 DEBUG Changed to real build directory /tmp/boegelbot/SLEPc/3.12.2/intel-2019b-Python-3.7.4/slepc-3.12.2/ (start_dir) | |
| == 2020-07-19 17:51:41,573 easyblock.py:3017 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: True | |
| == 2020-07-19 17:51:41,573 build_log.py:265 INFO configuring... | |
| == 2020-07-19 17:51:41,573 easyblock.py:3025 INFO Starting configure step | |
| == 2020-07-19 17:51:41,573 easyconfig.py:1599 INFO Generating template values... | |
| == 2020-07-19 17:51:41,573 templates.py:163 DEBUG config: <easybuild.framework.easyconfig.easyconfig.EasyConfig object at 0x14a052990ef0> | |
| == 2020-07-19 17:51:41,573 templates.py:190 DEBUG version found in easyconfig is 3.12.2 | |
| == 2020-07-19 17:51:41,573 systemtools.py:909 DEBUG Version is already a string ('3.7.4'), OK | |
| == 2020-07-19 17:51:41,573 templates.py:275 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2020-07-19 17:51:41,573 templates.py:275 DEBUG name: github_account, config: %(namelower)s | |
| == 2020-07-19 17:51:41,574 templates.py:275 DEBUG name: name, config: SLEPc | |
| == 2020-07-19 17:51:41,574 templates.py:275 DEBUG name: parallel, config: 16 | |
| == 2020-07-19 17:51:41,574 templates.py:275 DEBUG name: version, config: 3.12.2 | |
| == 2020-07-19 17:51:41,574 templates.py:275 DEBUG name: versionsuffix, config: -Python-%(pyver)s | |
| == 2020-07-19 17:51:41,574 templates.py:275 DEBUG name: versionprefix, config: | |
| == 2020-07-19 17:51:41,574 toolchain.py:381 DEBUG get_software_version software version 2018.5.288 for impi was found in environment | |
| == 2020-07-19 17:51:41,574 mpi.py:119 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'IntelMPI' | |
| == 2020-07-19 17:51:41,574 mpi.py:291 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2020-07-19 17:51:41,574 easyconfig.py:1618 INFO Template values: arch='x86_64', bitbucket_account='slepc', builddir='/tmp/boegelbot/SLEPc/3.12.2/intel-2019b-Python-3.7.4', github_account='slepc', installdir='/users/boegelbot/CentOS8/haswell/software/SLEPc/3.12.2-intel-2019b-Python-3.7.4', mpi_cmd_prefix='mpirun -n 1', name='SLEPc', nameletter='S', nameletterlower='s', namelower='slepc', parallel='16', pymajver='3', pyminver='7', pyshortver='3.7', pyver='3.7.4', toolchain_name='intel', toolchain_version='2019b', version='3.12.2', version_major='3', version_major_minor='3.12', version_minor='12', versionprefix='', versionsuffix='-Python-3.7.4' | |
| == 2020-07-19 17:51:41,574 easyblock.py:3031 INFO Running method configure_step part of step configure | |
| == 2020-07-19 17:51:41,574 environment.py:97 INFO Environment variable SLEPC_DIR set to /tmp/boegelbot/SLEPc/3.12.2/intel-2019b-Python-3.7.4/slepc-3.12.2/ (previously undefined) | |
| == 2020-07-19 17:51:41,574 slepc.py:78 DEBUG SLEPC_DIR: /tmp/boegelbot/SLEPc/3.12.2/intel-2019b-Python-3.7.4/slepc-3.12.2/ | |
| == 2020-07-19 17:51:41,575 easyconfig.py:1061 DEBUG Dependencies BEFORE filtering: [{'full_mod_name': 'Python/3.7.4-GCCcore-8.3.0', 'short_mod_name': 'Python/3.7.4-GCCcore-8.3.0', 'name': 'Python', 'version': '3.7.4', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '8.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PETSc/3.12.4-intel-2019b-Python-3.7.4', 'short_mod_name': 'PETSc/3.12.4-intel-2019b-Python-3.7.4', 'name': 'PETSc', 'version': '3.12.4', 'versionsuffix': '-Python-3.7.4', 'toolchain': {'name': 'intel', 'version': '2019b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
| == 2020-07-19 17:51:41,575 easyconfig.py:1064 DEBUG Dependencies AFTER filtering: [{'full_mod_name': 'Python/3.7.4-GCCcore-8.3.0', 'short_mod_name': 'Python/3.7.4-GCCcore-8.3.0', 'name': 'Python', 'version': '3.7.4', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '8.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'PETSc/3.12.4-intel-2019b-Python-3.7.4', 'short_mod_name': 'PETSc/3.12.4-intel-2019b-Python-3.7.4', 'name': 'PETSc', 'version': '3.12.4', 'versionsuffix': '-Python-3.7.4', 'toolchain': {'name': 'intel', 'version': '2019b'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
| == 2020-07-19 17:51:41,575 easyblock.py:968 DEBUG Creating the installation directory /users/boegelbot/CentOS8/haswell/software/SLEPc/3.12.2-intel-2019b-Python-3.7.4 (cleanup: True) | |
| == 2020-07-19 17:51:41,575 easyblock.py:979 INFO Found old directory /users/boegelbot/CentOS8/haswell/software/SLEPc/3.12.2-intel-2019b-Python-3.7.4 | |
| == 2020-07-19 17:51:41,577 filetools.py:330 INFO Path /users/boegelbot/CentOS8/haswell/software/SLEPc/3.12.2-intel-2019b-Python-3.7.4 successfully removed. | |
| == 2020-07-19 17:51:41,577 easyblock.py:987 INFO Removed old directory /users/boegelbot/CentOS8/haswell/software/SLEPc/3.12.2-intel-2019b-Python-3.7.4 | |
| == 2020-07-19 17:51:41,577 easyblock.py:999 INFO Cleaning only, no actual creation of /users/boegelbot/CentOS8/haswell/software/SLEPc/3.12.2-intel-2019b-Python-3.7.4, only verification/defining of dirname /users/boegelbot/CentOS8/haswell/software/SLEPc | |
| == 2020-07-19 17:51:41,578 run.py:203 DEBUG run_cmd: running cmd ./configure --prefix=/users/boegelbot/CentOS8/haswell/software/SLEPc/3.12.2-intel-2019b-Python-3.7.4 --with-python=1 --with-python-dir=/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0 (in /tmp/boegelbot/SLEPc/3.12.2/intel-2019b-Python-3.7.4/slepc-3.12.2) | |
| == 2020-07-19 17:51:41,578 run.py:222 INFO running cmd: ./configure --prefix=/users/boegelbot/CentOS8/haswell/software/SLEPc/3.12.2-intel-2019b-Python-3.7.4 --with-python=1 --with-python-dir=/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0 | |
| == 2020-07-19 17:51:41,938 build_log.py:169 ERROR EasyBuild crashed with an error (at easybuild/base/exceptions.py:124 in __init__): cmd " ./configure --prefix=/users/boegelbot/CentOS8/haswell/software/SLEPc/3.12.2-intel-2019b-Python-3.7.4 --with-python=1 --with-python-dir=/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0 " exited with exit code 1 and output: | |
| ERROR: Invalid arguments --with-python=1 --with-python-dir=/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0 | |
| Use -h for help | |
| (at easybuild/tools/run.py:533 in parse_cmd_output) | |
| == 2020-07-19 17:51:41,939 config.py:569 DEBUG software install path as specified by 'installpath' and 'subdir_software': /users/boegelbot/CentOS8/haswell/software | |
| == 2020-07-19 17:51:41,939 filetools.py:1605 INFO Removing lock /users/boegelbot/CentOS8/haswell/software/.locks/_users_boegelbot_CentOS8_haswell_software_SLEPc_3.12.2-intel-2019b-Python-3.7.4.lock... | |
| == 2020-07-19 17:51:41,941 filetools.py:330 INFO Path /users/boegelbot/CentOS8/haswell/software/.locks/_users_boegelbot_CentOS8_haswell_software_SLEPc_3.12.2-intel-2019b-Python-3.7.4.lock successfully removed. | |
| == 2020-07-19 17:51:41,941 filetools.py:1609 INFO Lock removed: /users/boegelbot/CentOS8/haswell/software/.locks/_users_boegelbot_CentOS8_haswell_software_SLEPc_3.12.2-intel-2019b-Python-3.7.4.lock | |
| == 2020-07-19 17:51:41,941 easyblock.py:3303 WARNING build failed (first 300 chars): cmd " ./configure --prefix=/users/boegelbot/CentOS8/haswell/software/SLEPc/3.12.2-intel-2019b-Python-3.7.4 --with-python=1 --with-python-dir=/shared/easybuilder/CentOS8/haswell/software/Python/3.7.4-GCCcore-8.3.0 " exited with exit code 1 and output: | |
| ERROR: Invalid arguments --with-python=1 --with- | |
| == 2020-07-19 17:51:41,942 easyblock.py:295 INFO Closing log for application name SLEPc version 3.12.2 |
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