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(partial) EasyBuild log for failed build of /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1-foss-2020a-Python-3.8.2.eb (PR(s) #20414)
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== 2024-04-24 15:01:14,711 easyblock.py:314 INFO This is EasyBuild 5.0.0.dev0-rfb286aac90c72b21af92f457539e86e10f6a98c2 (framework: 5.0.0.dev0-rfb286aac90c72b21af92f457539e86e10f6a98c2, easyblocks: 5.0.0.dev0-r57cfdce4ffc5bf9170bc846240057dea346c3bf8) on host jsczen3c1.int.jsc-zen3.fz-juelich.de. | |
== 2024-04-24 15:01:14,711 easyblock.py:320 INFO This is easyblock CMakeMake from module easybuild.easyblocks.generic.cmakemake (/home/boegelbot/easybuild/5.0.x/easybuild-easyblocks/easybuild/easyblocks/generic/cmakemake.py) | |
== 2024-04-24 15:01:14,711 easyblock.py:1050 INFO Build dir set to /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2 | |
== 2024-04-24 15:01:14,711 config.py:692 DEBUG software install path as specified by 'installpath' and 'subdir_software': /project/def-maintainers/boegelbot/rocky9/zen3/software | |
== 2024-04-24 15:01:14,711 easyconfig.py:2609 DEBUG Determining software installation subdir for Arrow EasyConfig @ /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1-foss-2020a-Python-3.8.2.eb | |
== 2024-04-24 15:01:14,711 easyconfig.py:2612 DEBUG Using fixed naming software installation subdir: Arrow/0.17.1-foss-2020a-Python-3.8.2 | |
== 2024-04-24 15:01:14,711 easyblock.py:1107 INFO Software install dir set to /project/def-maintainers/boegelbot/rocky9/zen3/software/Arrow/0.17.1-foss-2020a-Python-3.8.2 | |
== 2024-04-24 15:01:14,711 config.py:692 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /project/def-maintainers/boegelbot/rocky9/zen3/modules | |
== 2024-04-24 15:01:14,711 easyblock.py:1112 INFO Module install dir set to /project/def-maintainers/boegelbot/rocky9/zen3/modules/all | |
== 2024-04-24 15:01:14,711 easyblock.py:289 INFO Init completed for application name Arrow version 0.17.1 | |
== 2024-04-24 15:01:14,712 easyblock.py:4265 INFO Obtained application instance of for Arrow (easyblock: CMakeMake) | |
== 2024-04-24 15:01:14,712 easyblock.py:4278 DEBUG Skip set to False | |
== 2024-04-24 15:01:14,712 easyconfig.py:1680 INFO Generating template values... | |
== 2024-04-24 15:01:14,712 templates.py:200 DEBUG config: Arrow EasyConfig @ /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1-foss-2020a-Python-3.8.2.eb | |
== 2024-04-24 15:01:14,712 templates.py:230 DEBUG version found in easyconfig is 0.17.1 | |
== 2024-04-24 15:01:14,712 templates.py:332 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-04-24 15:01:14,712 templates.py:332 DEBUG name: github_account, config: %(namelower)s | |
== 2024-04-24 15:01:14,712 templates.py:332 DEBUG name: name, config: Arrow | |
== 2024-04-24 15:01:14,712 templates.py:332 DEBUG name: parallel, config: None | |
== 2024-04-24 15:01:14,712 templates.py:332 DEBUG name: version, config: 0.17.1 | |
== 2024-04-24 15:01:14,712 templates.py:332 DEBUG name: versionsuffix, config: -Python-%(pyver)s | |
== 2024-04-24 15:01:14,712 templates.py:332 DEBUG name: versionprefix, config: | |
== 2024-04-24 15:01:14,713 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-04-24 15:01:14,713 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-04-24 15:01:14,713 easyconfig.py:1699 INFO Template values: arch='x86_64', bitbucket_account='arrow', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_int_comma_sep='80', cuda_int_semicolon_sep='80', cuda_int_space_sep='80', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', github_account='arrow', module_name='Arrow/0.17.1-foss-2020a-Python-3.8.2', mpi_cmd_prefix='mpirun -n 1', name='Arrow', nameletter='A', nameletterlower='a', namelower='arrow', pymajver='3', pyminver='8', pyshortver='3.8', pyver='3.8.2', sysroot='', toolchain_name='foss', toolchain_version='2020a', version='0.17.1', version_major='0', version_major_minor='0.17', version_minor='17', versionprefix='', versionsuffix='-Python-3.8.2' | |
== 2024-04-24 15:01:14,713 one.py:149 DEBUG Not copying '__builtins__' variable from parsed easyconfig | |
== 2024-04-24 15:01:14,714 one.py:528 DEBUG Extracted comments: | |
{'above': {'configopts': ['# see https://arrow.apache.org/docs/developers/python.html'], | |
'dependencies': ['# Arrow strongly prefers included jemalloc, so not including it as a dependency'], | |
'local_install_pyarrow_cmds': ['# also install Python bindings'], | |
'preconfigopts': ['# Avoid searching dependencies in an active conda environment']}, | |
'header': [], | |
'inline': {}, | |
'iterabove': {}, | |
'iterinline': {'checksums': {" 'cbc51c343bca08b10f7f1b2ef15cb15057c30e5e9017cfcee18337b7e2da9ea2',": ' # ' | |
'apache-arrow-0.17.1.tar.gz', | |
" 'd1076d35966056c39e0c88b8fadaaa7660ee4d8c07fc2c5bdf1d5d6e683ff44a',": ' # ' | |
'Arrow-0.17.1_fix-arm.patch'}, | |
'dependencies': {" ('SciPy-bundle', '2020.03', versionsuffix),": ' # for numpy'}}, | |
'tail': []} | |
== 2024-04-24 15:01:14,714 one.py:179 INFO Skipping reformatting value for parameter 'toolchain' | |
== 2024-04-24 15:01:14,714 easyconfig.py:1243 DEBUG Dumped easyconfig: easyblock = 'CMakeMake' | |
name = 'Arrow' | |
version = '0.17.1' | |
versionsuffix = '-Python-%(pyver)s' | |
homepage = 'https://arrow.apache.org' | |
description = """Apache Arrow (incl. PyArrow Python bindings), a cross-language development platform | |
for in-memory data.""" | |
toolchain = {'name': 'foss', 'version': '2020a'} | |
source_urls = ['https://archive.apache.org/dist/%(namelower)s/%(namelower)s-%(version)s'] | |
sources = ['apache-%(namelower)s-%(version)s.tar.gz'] | |
patches = ['%(name)s-%(version_major_minor)s.1_fix-arm.patch'] | |
checksums = [ | |
'cbc51c343bca08b10f7f1b2ef15cb15057c30e5e9017cfcee18337b7e2da9ea2', # apache-%(namelower)s-%(version)s.tar.gz | |
'd1076d35966056c39e0c88b8fadaaa7660ee4d8c07fc2c5bdf1d5d6e683ff44a', # %(name)s-%(version_major_minor)s.1_fix-arm.patch | |
] | |
builddependencies = [ | |
('CMake', '3.16.4', '', ('GCCcore', '9.3.0')), | |
('Autotools', '20180311', '', ('GCCcore', '9.3.0')), | |
('flex', '2.6.4', '', ('GCCcore', '9.3.0')), | |
('Bison', '3.5.3', '', ('GCCcore', '9.3.0')), | |
('pkg-config', '0.29.2', '', ('GCCcore', '9.3.0')), | |
] | |
# Arrow strongly prefers included jemalloc, so not including it as a dependency | |
dependencies = [ | |
('Python', '3.8.2', '', ('GCCcore', '9.3.0')), | |
('SciPy-bundle', '2020.03', '-Python-%(pyver)s'), | |
('Boost', '1.72.0', '', ('gompi', '2020a')), | |
] | |
# Avoid searching dependencies in an active conda environment | |
preconfigopts = "unset CONDA_PREFIX; " | |
# see https://arrow.apache.org/docs/developers/python.html | |
configopts = "-DARROW_PYTHON=on -DARROW_PARQUET=ON -DARROW_WITH_SNAPPY=ON -DCMAKE_INSTALL_LIBDIR=lib -DPython3_ROOT_DIR=$EBROOTPYTHON" | |
postinstallcmds = [ | |
"export PKG_CONFIG_PATH=%(installdir)s/lib/pkgconfig:$PKG_CONFIG_PATH && export PYTHONPATH=%(installdir)s/lib/python%(pyshortver)s/site-packages:$PYTHONPATH && cd %(builddir)s/*%(namelower)s-%(version)s/python && export XDG_CACHE_HOME=$TMPDIR && sed -i 's/numpy==[0-9.]*/numpy/g' pyproject.toml && Python3_ROOT_DIR=$EBROOTPYTHON PYARROW_WITH_DATASET=1 PYARROW_WITH_PARQUET=1 python -m pip install --prefix %(installdir)s --no-build-isolation .", | |
] | |
start_dir = 'cpp' | |
sanity_check_paths = { | |
'files': ['lib/libarrow.a', 'lib/libarrow.so', 'lib/libarrow_python.a', 'lib/libarrow_python.so'], | |
'dirs': ['include/%(namelower)s', 'lib/cmake/%(namelower)s', 'lib/pkgconfig', 'lib/python%(pyshortver)s/site-packages'], | |
} | |
sanity_check_commands = [ | |
"python -c 'import pyarrow'", | |
"python -c 'import pyarrow.dataset'", | |
"python -c 'import pyarrow.parquet'", | |
] | |
modextrapaths = {'PYTHONPATH': 'lib/python%(pyshortver)s/site-packages'} | |
moduleclass = 'data' | |
== 2024-04-24 15:01:14,715 filetools.py:1893 INFO Creating directory /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096 (parents: True, set_gid: True, sticky: False) | |
== 2024-04-24 15:01:14,715 filetools.py:1745 INFO Adjusting permissions recursively for /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096 | |
== 2024-04-24 15:01:14,715 filetools.py:1775 DEBUG Current permissions for /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096: 0o40755 | |
== 2024-04-24 15:01:14,715 filetools.py:1780 DEBUG Adding permissions for /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096: 0o2000 | |
== 2024-04-24 15:01:14,715 filetools.py:1795 DEBUG Changing permissions for /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096 to 0o42755 | |
== 2024-04-24 15:01:14,715 easyblock.py:4508 INFO Dumped easyconfig instance to /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/Arrow-0.17.1-foss-2020a-Python-3.8.2.eb | |
== 2024-04-24 15:01:14,715 filetools.py:1893 INFO Creating directory /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/easyblocks (parents: True, set_gid: True, sticky: False) | |
== 2024-04-24 15:01:14,715 filetools.py:1745 INFO Adjusting permissions recursively for /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/easyblocks | |
== 2024-04-24 15:01:14,715 filetools.py:1775 DEBUG Current permissions for /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/easyblocks: 0o42755 | |
== 2024-04-24 15:01:14,715 filetools.py:1780 DEBUG Adding permissions for /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/easyblocks: 0o2000 | |
== 2024-04-24 15:01:14,716 filetools.py:1793 DEBUG Current permissions for /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/easyblocks are already OK: 0o42755 | |
== 2024-04-24 15:01:14,717 filetools.py:2369 INFO /home/boegelbot/easybuild/5.0.x/easybuild-easyblocks/easybuild/easyblocks/generic/configuremake.py copied to /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/easyblocks/configuremake.py | |
== 2024-04-24 15:01:14,717 easyblock.py:4488 INFO Dumped easyblock configuremake.py required for reproduction to /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/easyblocks | |
== 2024-04-24 15:01:14,717 filetools.py:1918 DEBUG Not creating existing path /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/easyblocks | |
== 2024-04-24 15:01:14,718 filetools.py:2369 INFO /home/boegelbot/easybuild/5.0.x/easybuild-easyblocks/easybuild/easyblocks/generic/cmakemake.py copied to /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/easyblocks/cmakemake.py | |
== 2024-04-24 15:01:14,718 easyblock.py:4488 INFO Dumped easyblock cmakemake.py required for reproduction to /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/easyblocks | |
== 2024-04-24 15:01:14,718 filetools.py:1893 INFO Creating directory /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/hooks (parents: True, set_gid: True, sticky: False) | |
== 2024-04-24 15:01:14,718 filetools.py:1745 INFO Adjusting permissions recursively for /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/hooks | |
== 2024-04-24 15:01:14,718 filetools.py:1775 DEBUG Current permissions for /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/hooks: 0o42755 | |
== 2024-04-24 15:01:14,718 filetools.py:1780 DEBUG Adding permissions for /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/hooks: 0o2000 | |
== 2024-04-24 15:01:14,718 filetools.py:1793 DEBUG Current permissions for /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/hooks are already OK: 0o42755 | |
== 2024-04-24 15:01:14,719 filetools.py:2369 INFO /home/boegelbot/boegelbot/eb_hooks.py copied to /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/hooks/eb_hooks.py | |
== 2024-04-24 15:01:14,719 easyblock.py:4520 INFO Dumped hooks file /home/boegelbot/boegelbot/eb_hooks.py which is (potentially) required for reproduction to /tmp/eb-a1hrcbwc/reprod_20240424150114_2640096/hooks/eb_hooks.py | |
== 2024-04-24 15:01:14,720 easyblock.py:2241 INFO Number of iterations to perform for central part of installation procedure: 1 | |
== 2024-04-24 15:01:14,720 build_log.py:267 INFO building and installing Arrow/0.17.1-foss-2020a-Python-3.8.2... | |
== 2024-04-24 15:01:14,720 config.py:692 DEBUG software install path as specified by 'installpath' and 'subdir_software': /project/def-maintainers/boegelbot/rocky9/zen3/software | |
== 2024-04-24 15:01:14,721 filetools.py:1976 INFO Lock /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_Arrow_0.17.1-foss-2020a-Python-3.8.2.lock does not exist | |
== 2024-04-24 15:01:14,721 config.py:692 DEBUG software install path as specified by 'installpath' and 'subdir_software': /project/def-maintainers/boegelbot/rocky9/zen3/software | |
== 2024-04-24 15:01:14,721 filetools.py:1933 INFO Creating lock at /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_Arrow_0.17.1-foss-2020a-Python-3.8.2.lock... | |
== 2024-04-24 15:01:14,721 filetools.py:1893 INFO Creating directory /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_Arrow_0.17.1-foss-2020a-Python-3.8.2.lock (parents: True, set_gid: True, sticky: False) | |
== 2024-04-24 15:01:14,722 filetools.py:1745 INFO Adjusting permissions recursively for /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_Arrow_0.17.1-foss-2020a-Python-3.8.2.lock | |
== 2024-04-24 15:01:14,722 filetools.py:1775 DEBUG Current permissions for /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_Arrow_0.17.1-foss-2020a-Python-3.8.2.lock: 0o42755 | |
== 2024-04-24 15:01:14,722 filetools.py:1780 DEBUG Adding permissions for /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_Arrow_0.17.1-foss-2020a-Python-3.8.2.lock: 0o2000 | |
== 2024-04-24 15:01:14,723 filetools.py:1793 DEBUG Current permissions for /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_Arrow_0.17.1-foss-2020a-Python-3.8.2.lock are already OK: 0o42755 | |
== 2024-04-24 15:01:14,723 filetools.py:1942 INFO Lock created: /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_Arrow_0.17.1-foss-2020a-Python-3.8.2.lock | |
== 2024-04-24 15:01:14,723 easyblock.py:3974 DEBUG Not skipping fetch step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-04-24 15:01:14,723 build_log.py:267 INFO fetching files... | |
== 2024-04-24 15:01:14,723 easyblock.py:3983 INFO Starting fetch step | |
== 2024-04-24 15:01:14,723 easyconfig.py:1680 INFO Generating template values... | |
== 2024-04-24 15:01:14,723 templates.py:200 DEBUG config: Arrow EasyConfig @ /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1-foss-2020a-Python-3.8.2.eb | |
== 2024-04-24 15:01:14,723 templates.py:230 DEBUG version found in easyconfig is 0.17.1 | |
== 2024-04-24 15:01:14,723 templates.py:332 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-04-24 15:01:14,723 templates.py:332 DEBUG name: github_account, config: %(namelower)s | |
== 2024-04-24 15:01:14,723 templates.py:332 DEBUG name: name, config: Arrow | |
== 2024-04-24 15:01:14,723 templates.py:332 DEBUG name: parallel, config: None | |
== 2024-04-24 15:01:14,723 templates.py:332 DEBUG name: version, config: 0.17.1 | |
== 2024-04-24 15:01:14,724 templates.py:332 DEBUG name: versionsuffix, config: -Python-%(pyver)s | |
== 2024-04-24 15:01:14,724 templates.py:332 DEBUG name: versionprefix, config: | |
== 2024-04-24 15:01:14,724 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-04-24 15:01:14,724 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-04-24 15:01:14,724 easyconfig.py:1699 INFO Template values: arch='x86_64', bitbucket_account='arrow', builddir='/tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_int_comma_sep='80', cuda_int_semicolon_sep='80', cuda_int_space_sep='80', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', github_account='arrow', installdir='/project/def-maintainers/boegelbot/rocky9/zen3/software/Arrow/0.17.1-foss-2020a-Python-3.8.2', module_name='Arrow/0.17.1-foss-2020a-Python-3.8.2', mpi_cmd_prefix='mpirun -n 1', name='Arrow', nameletter='A', nameletterlower='a', namelower='arrow', pymajver='3', pyminver='8', pyshortver='3.8', pyver='3.8.2', start_dir='cpp', sysroot='', toolchain_name='foss', toolchain_version='2020a', version='0.17.1', version_major='0', version_major_minor='0.17', version_minor='17', versionprefix='', versionsuffix='-Python-3.8.2' | |
== 2024-04-24 15:01:14,724 easyblock.py:3991 INFO Running method fetch_step part of step fetch | |
== 2024-04-24 15:01:14,724 easyblock.py:2363 WARNING Easyconfig does not specify an EasyBuild-version (key 'easybuild_version')! Assuming the latest version | |
== 2024-04-24 15:01:14,724 easyblock.py:802 INFO Considering directory in which easyconfig file is located when searching for apache-arrow-0.17.1.tar.gz: /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow | |
== 2024-04-24 15:01:14,725 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/boegelbot/easybuild/5.0.x/easybuild-framework/eb | |
== 2024-04-24 15:01:14,725 tools.py:289 INFO Not considering /home/boegelbot/easybuild/5.0.x (no easybuild/easyconfigs subdir found) | |
== 2024-04-24 15:01:14,725 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/5.0.x/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,725 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-a1hrcbwc/files_pr20414/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,726 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-a1hrcbwc/fake_vsc_6flqc7pp/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,726 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/boegelbot/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,726 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/.local/lib/python3.9/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,726 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/5.0.x/easybuild-framework/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,726 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/5.0.x/easybuild-easyblocks/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,726 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/5.0.x/easybuild-easyconfigs/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,726 tools.py:306 DEBUG Added /home/boegelbot/easybuild/5.0.x/easybuild-easyconfigs/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-04-24 15:01:14,726 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python39.zip/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,726 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,726 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/lib-dynload/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,726 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/.local/lib/python3.9/site-packages/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,726 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/site-packages/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,726 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.9/site-packages/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,728 easyblock.py:844 INFO Found file apache-arrow-0.17.1.tar.gz at /project/def-maintainers/boegelbot/sources/a/Arrow/apache-arrow-0.17.1.tar.gz | |
== 2024-04-24 15:01:14,728 easyblock.py:453 DEBUG File /project/def-maintainers/boegelbot/sources/a/Arrow/apache-arrow-0.17.1.tar.gz found for source apache-arrow-0.17.1.tar.gz | |
== 2024-04-24 15:01:14,728 easyblock.py:497 INFO Added sources: [{'name': 'apache-arrow-0.17.1.tar.gz', 'path': '/project/def-maintainers/boegelbot/sources/a/Arrow/apache-arrow-0.17.1.tar.gz', 'cmd': None, 'checksum': 'cbc51c343bca08b10f7f1b2ef15cb15057c30e5e9017cfcee18337b7e2da9ea2', 'finalpath': '/tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2'}] | |
== 2024-04-24 15:01:14,728 easyblock.py:802 INFO Considering directory in which easyconfig file is located when searching for Arrow-0.17.1_fix-arm.patch: /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow | |
== 2024-04-24 15:01:14,728 tools.py:273 INFO Found location to 'eb' script via $EB_SCRIPT_PATH: /home/boegelbot/easybuild/5.0.x/easybuild-framework/eb | |
== 2024-04-24 15:01:14,728 tools.py:289 INFO Not considering /home/boegelbot/easybuild/5.0.x (no easybuild/easyconfigs subdir found) | |
== 2024-04-24 15:01:14,728 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/5.0.x/easybuild-easyconfigs/easybuild/easyconfigs/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,728 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-a1hrcbwc/files_pr20414/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,728 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /tmp/eb-a1hrcbwc/fake_vsc_6flqc7pp/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,728 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/boegelbot/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,729 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/.local/lib/python3.9/site-packages/git/ext/gitdb/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,729 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/5.0.x/easybuild-framework/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,729 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/5.0.x/easybuild-easyblocks/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,729 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/easybuild/5.0.x/easybuild-easyconfigs/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,729 tools.py:306 DEBUG Added /home/boegelbot/easybuild/5.0.x/easybuild-easyconfigs/easybuild/easyconfigs to list of paths for easybuild/easyconfigs | |
== 2024-04-24 15:01:14,729 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python39.zip/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,729 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,729 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/lib-dynload/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,729 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /home/boegelbot/.local/lib/python3.9/site-packages/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,729 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib64/python3.9/site-packages/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,729 tools.py:302 DEBUG Checking for easybuild/easyconfigs at /usr/lib/python3.9/site-packages/easybuild/easyconfigs | |
== 2024-04-24 15:01:14,729 easyblock.py:844 INFO Found file Arrow-0.17.1_fix-arm.patch at /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1_fix-arm.patch | |
== 2024-04-24 15:01:14,729 easyblock.py:521 DEBUG File /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1_fix-arm.patch found for patch Arrow-0.17.1_fix-arm.patch | |
== 2024-04-24 15:01:14,729 easyblock.py:536 INFO Added patches: [{'name': 'Arrow-0.17.1_fix-arm.patch', 'postinstall': False, 'path': '/tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1_fix-arm.patch', 'checksum': 'd1076d35966056c39e0c88b8fadaaa7660ee4d8c07fc2c5bdf1d5d6e683ff44a'}] | |
== 2024-04-24 15:01:14,730 filetools.py:1221 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-04-24 15:01:14,741 easyblock.py:2416 INFO md5 checksum for /project/def-maintainers/boegelbot/sources/a/Arrow/apache-arrow-0.17.1.tar.gz: 7dc5073d863cfa521fa717fa7d0b8e1e | |
== 2024-04-24 15:01:14,741 filetools.py:1221 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-04-24 15:01:14,746 easyblock.py:2416 INFO sha256 checksum for /project/def-maintainers/boegelbot/sources/a/Arrow/apache-arrow-0.17.1.tar.gz: cbc51c343bca08b10f7f1b2ef15cb15057c30e5e9017cfcee18337b7e2da9ea2 | |
== 2024-04-24 15:01:14,746 filetools.py:1221 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-04-24 15:01:14,746 easyblock.py:2416 INFO md5 checksum for /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1_fix-arm.patch: 000e5bee862ec328a865ec40beeb0838 | |
== 2024-04-24 15:01:14,746 filetools.py:1221 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-04-24 15:01:14,746 easyblock.py:2416 INFO sha256 checksum for /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1_fix-arm.patch: d1076d35966056c39e0c88b8fadaaa7660ee4d8c07fc2c5bdf1d5d6e683ff44a | |
== 2024-04-24 15:01:14,746 easyconfig.py:2596 DEBUG Determining full module name for Arrow EasyConfig @ /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1-foss-2020a-Python-3.8.2.eb (force_visible: False) | |
== 2024-04-24 15:01:14,746 easyconfig.py:2573 DEBUG No alternative software name specified to determine module name with | |
== 2024-04-24 15:01:14,746 utilities.py:114 DEBUG Module name Arrow/0.17.1-foss-2020a-Python-3.8.2 validated | |
== 2024-04-24 15:01:14,747 easyconfig.py:2604 DEBUG Obtained valid full module name Arrow/0.17.1-foss-2020a-Python-3.8.2 | |
== 2024-04-24 15:01:14,747 config.py:692 DEBUG modules install path as specified by 'installpath' and 'subdir_modules': /project/def-maintainers/boegelbot/rocky9/zen3/modules | |
== 2024-04-24 15:01:14,747 easyblock.py:2451 INFO Checking dirs that need to be created: ['/project/def-maintainers/boegelbot/rocky9/zen3/software/Arrow/0.17.1-foss-2020a-Python-3.8.2', '/project/def-maintainers/boegelbot/rocky9/zen3/modules/all/Arrow', '/project/def-maintainers/boegelbot/rocky9/zen3/modules/data/Arrow'] | |
== 2024-04-24 15:01:14,747 filetools.py:1893 INFO Creating directory /project/def-maintainers/boegelbot/rocky9/zen3/software/Arrow/0.17.1-foss-2020a-Python-3.8.2 (parents: True, set_gid: True, sticky: False) | |
== 2024-04-24 15:01:14,747 filetools.py:1745 INFO Adjusting permissions recursively for /project/def-maintainers/boegelbot/rocky9/zen3/software/Arrow/0.17.1-foss-2020a-Python-3.8.2 | |
== 2024-04-24 15:01:14,748 filetools.py:1775 DEBUG Current permissions for /project/def-maintainers/boegelbot/rocky9/zen3/software/Arrow/0.17.1-foss-2020a-Python-3.8.2: 0o42755 | |
== 2024-04-24 15:01:14,748 filetools.py:1780 DEBUG Adding permissions for /project/def-maintainers/boegelbot/rocky9/zen3/software/Arrow/0.17.1-foss-2020a-Python-3.8.2: 0o2000 | |
== 2024-04-24 15:01:14,748 filetools.py:1793 DEBUG Current permissions for /project/def-maintainers/boegelbot/rocky9/zen3/software/Arrow/0.17.1-foss-2020a-Python-3.8.2 are already OK: 0o42755 | |
== 2024-04-24 15:01:14,748 filetools.py:1918 DEBUG Not creating existing path /project/def-maintainers/boegelbot/rocky9/zen3/modules/all/Arrow | |
== 2024-04-24 15:01:14,749 filetools.py:1918 DEBUG Not creating existing path /project/def-maintainers/boegelbot/rocky9/zen3/modules/data/Arrow | |
== 2024-04-24 15:01:14,750 filetools.py:1221 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-04-24 15:01:14,750 configuremake.py:95 INFO config.guess version: 2023-08-22 (last updated: 2024-01-18T12:40:35.215953, SHA256 checksum: ec2577614252326f889df1de97b9a457c03a9a94811048563c211a44496d8ba3) | |
== 2024-04-24 15:01:14,750 configuremake.py:151 INFO Found config.guess at /project/def-maintainers/boegelbot/sources/generic/eb_v5.0.0.dev0/ConfigureMake/config.guess | |
== 2024-04-24 15:01:14,750 build_log.py:267 INFO ... (took < 1 sec) | |
== 2024-04-24 15:01:14,750 easyblock.py:3974 DEBUG Not skipping ready step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-04-24 15:01:14,751 build_log.py:267 INFO creating build dir, resetting environment... | |
== 2024-04-24 15:01:14,751 easyblock.py:3983 INFO Starting ready step | |
== 2024-04-24 15:01:14,751 easyconfig.py:1680 INFO Generating template values... | |
== 2024-04-24 15:01:14,751 templates.py:200 DEBUG config: Arrow EasyConfig @ /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1-foss-2020a-Python-3.8.2.eb | |
== 2024-04-24 15:01:14,751 templates.py:230 DEBUG version found in easyconfig is 0.17.1 | |
== 2024-04-24 15:01:14,751 templates.py:332 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-04-24 15:01:14,751 templates.py:332 DEBUG name: github_account, config: %(namelower)s | |
== 2024-04-24 15:01:14,751 templates.py:332 DEBUG name: name, config: Arrow | |
== 2024-04-24 15:01:14,751 templates.py:332 DEBUG name: parallel, config: None | |
== 2024-04-24 15:01:14,751 templates.py:332 DEBUG name: version, config: 0.17.1 | |
== 2024-04-24 15:01:14,751 templates.py:332 DEBUG name: versionsuffix, config: -Python-%(pyver)s | |
== 2024-04-24 15:01:14,751 templates.py:332 DEBUG name: versionprefix, config: | |
== 2024-04-24 15:01:14,751 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-04-24 15:01:14,751 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-04-24 15:01:14,752 easyconfig.py:1699 INFO Template values: arch='x86_64', bitbucket_account='arrow', builddir='/tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_int_comma_sep='80', cuda_int_semicolon_sep='80', cuda_int_space_sep='80', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', github_account='arrow', installdir='/project/def-maintainers/boegelbot/rocky9/zen3/software/Arrow/0.17.1-foss-2020a-Python-3.8.2', module_name='Arrow/0.17.1-foss-2020a-Python-3.8.2', mpi_cmd_prefix='mpirun -n 1', name='Arrow', nameletter='A', nameletterlower='a', namelower='arrow', pymajver='3', pyminver='8', pyshortver='3.8', pyver='3.8.2', start_dir='cpp', sysroot='', toolchain_name='foss', toolchain_version='2020a', version='0.17.1', version_major='0', version_major_minor='0.17', version_minor='17', versionprefix='', versionsuffix='-Python-3.8.2' | |
== 2024-04-24 15:01:14,752 easyblock.py:3991 INFO Running method check_readiness_step part of step ready | |
== 2024-04-24 15:01:14,752 easyblock.py:2251 DEBUG Desired parallelism specified via 'parallel' build option: None | |
== 2024-04-24 15:01:14,752 easyblock.py:2260 INFO Setting parallelism: 16 | |
== 2024-04-24 15:01:14,752 modules.py:797 DEBUG Current MODULEPATH: /project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
== 2024-04-24 15:01:14,752 modules.py:806 DEBUG Changing LD_LIBRARY_PATH from '/opt/software/slurm/lib64' to '/opt/software/slurm/lib64:/opt/software/slurm/lib64' in environment for module command | |
== 2024-04-24 15:01:14,752 run.py:396 INFO Running shell command '/usr/share/lmod/lmod/libexec/lmod python --terse list' in /home/boegelbot/boegelbot | |
== 2024-04-24 15:01:14,785 run.py:496 INFO Output of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stdout only): | |
import os | |
os.environ["MODULEPATH"] = "/project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core"; | |
os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXyA9IHsKTVR2ZXJzaW9uID0gMywKY19yZWJ1aWxkVGltZSA9IGZhbHNlLApjX3Nob3J0VGltZSA9IGZhbHNlLApkZXB0aFQgPSB7fSwKZmFtaWx5ID0ge30sCm1UID0ge30sCm1wYXRoQSA9IHsKIi9wcm9qZWN0L2RlZi1tYWludGFpbmVycy9ib2VnZWxib3Qvcm9ja3k5L3plbjMvbW9kdWxlcy9hbGwiCiwgIi9ldGMvbW9kdWxlZmlsZXMiLCAiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcyIsICIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IgosICIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmUiLCAiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsCn0sCnN5c3RlbUJhc2VNUEFUSCA9ICIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hh"; | |
os.environ["_ModuleTable002_"] = "cmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsCn0K"; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
_mlstatus = True | |
== 2024-04-24 15:01:14,785 run.py:497 INFO Warnings and errors of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stderr only): | |
No modules loaded | |
== 2024-04-24 15:01:14,785 run.py:502 INFO Shell command completed successfully (see output above): /usr/share/lmod/lmod/libexec/lmod python --terse list | |
== 2024-04-24 15:01:14,785 modules.py:818 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python --terse list': stdout: import os | |
os.environ["MODULEPATH"] = "/project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "cmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsCn0K"; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
_mlstatus = True | |
; stderr: No modules loaded | |
== 2024-04-24 15:01:14,785 modules.py:1456 DEBUG Output found in stdout, seems like '/usr/share/lmod/lmod/libexec/lmod python --terse list' ran fine | |
== 2024-04-24 15:01:14,786 easyblock.py:3991 INFO Running method make_builddir part of step ready | |
== 2024-04-24 15:01:14,786 easyblock.py:1060 DEBUG Creating the build directory /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2 (cleanup: True) | |
== 2024-04-24 15:01:14,786 filetools.py:1893 INFO Creating directory /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2 (parents: True, set_gid: True, sticky: False) | |
== 2024-04-24 15:01:14,787 filetools.py:1745 INFO Adjusting permissions recursively for /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2 | |
== 2024-04-24 15:01:14,787 filetools.py:1775 DEBUG Current permissions for /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2: 0o42755 | |
== 2024-04-24 15:01:14,787 filetools.py:1780 DEBUG Adding permissions for /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2: 0o2000 | |
== 2024-04-24 15:01:14,787 filetools.py:1793 DEBUG Current permissions for /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2 are already OK: 0o42755 | |
== 2024-04-24 15:01:14,787 easyblock.py:3991 INFO Running method reset_env part of step ready | |
== 2024-04-24 15:01:14,787 easyblock.py:3991 INFO Running method handle_iterate_opts part of step ready | |
== 2024-04-24 15:01:14,787 easyconfig.py:1680 INFO Generating template values... | |
== 2024-04-24 15:01:14,787 templates.py:200 DEBUG config: Arrow EasyConfig @ /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1-foss-2020a-Python-3.8.2.eb | |
== 2024-04-24 15:01:14,787 templates.py:230 DEBUG version found in easyconfig is 0.17.1 | |
== 2024-04-24 15:01:14,787 templates.py:332 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-04-24 15:01:14,788 templates.py:332 DEBUG name: github_account, config: %(namelower)s | |
== 2024-04-24 15:01:14,788 templates.py:332 DEBUG name: name, config: Arrow | |
== 2024-04-24 15:01:14,788 templates.py:332 DEBUG name: parallel, config: 16 | |
== 2024-04-24 15:01:14,788 templates.py:332 DEBUG name: version, config: 0.17.1 | |
== 2024-04-24 15:01:14,788 templates.py:332 DEBUG name: versionsuffix, config: -Python-%(pyver)s | |
== 2024-04-24 15:01:14,788 templates.py:332 DEBUG name: versionprefix, config: | |
== 2024-04-24 15:01:14,788 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-04-24 15:01:14,788 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-04-24 15:01:14,788 easyconfig.py:1699 INFO Template values: arch='x86_64', bitbucket_account='arrow', builddir='/tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_int_comma_sep='80', cuda_int_semicolon_sep='80', cuda_int_space_sep='80', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', github_account='arrow', installdir='/project/def-maintainers/boegelbot/rocky9/zen3/software/Arrow/0.17.1-foss-2020a-Python-3.8.2', module_name='Arrow/0.17.1-foss-2020a-Python-3.8.2', mpi_cmd_prefix='mpirun -n 1', name='Arrow', nameletter='A', nameletterlower='a', namelower='arrow', parallel='16', pymajver='3', pyminver='8', pyshortver='3.8', pyver='3.8.2', start_dir='cpp', sysroot='', toolchain_name='foss', toolchain_version='2020a', version='0.17.1', version_major='0', version_major_minor='0.17', version_minor='17', versionprefix='', versionsuffix='-Python-3.8.2' | |
== 2024-04-24 15:01:14,788 build_log.py:267 INFO ... (took < 1 sec) | |
== 2024-04-24 15:01:14,788 easyblock.py:3974 DEBUG Not skipping source step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-04-24 15:01:14,788 build_log.py:267 INFO unpacking... | |
== 2024-04-24 15:01:14,789 easyblock.py:3983 INFO Starting source step | |
== 2024-04-24 15:01:14,789 easyconfig.py:1680 INFO Generating template values... | |
== 2024-04-24 15:01:14,789 templates.py:200 DEBUG config: Arrow EasyConfig @ /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1-foss-2020a-Python-3.8.2.eb | |
== 2024-04-24 15:01:14,789 templates.py:230 DEBUG version found in easyconfig is 0.17.1 | |
== 2024-04-24 15:01:14,789 templates.py:332 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-04-24 15:01:14,789 templates.py:332 DEBUG name: github_account, config: %(namelower)s | |
== 2024-04-24 15:01:14,789 templates.py:332 DEBUG name: name, config: Arrow | |
== 2024-04-24 15:01:14,789 templates.py:332 DEBUG name: parallel, config: 16 | |
== 2024-04-24 15:01:14,789 templates.py:332 DEBUG name: version, config: 0.17.1 | |
== 2024-04-24 15:01:14,789 templates.py:332 DEBUG name: versionsuffix, config: -Python-%(pyver)s | |
== 2024-04-24 15:01:14,789 templates.py:332 DEBUG name: versionprefix, config: | |
== 2024-04-24 15:01:14,789 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-04-24 15:01:14,789 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-04-24 15:01:14,789 easyconfig.py:1699 INFO Template values: arch='x86_64', bitbucket_account='arrow', builddir='/tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_int_comma_sep='80', cuda_int_semicolon_sep='80', cuda_int_space_sep='80', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', github_account='arrow', installdir='/project/def-maintainers/boegelbot/rocky9/zen3/software/Arrow/0.17.1-foss-2020a-Python-3.8.2', module_name='Arrow/0.17.1-foss-2020a-Python-3.8.2', mpi_cmd_prefix='mpirun -n 1', name='Arrow', nameletter='A', nameletterlower='a', namelower='arrow', parallel='16', pymajver='3', pyminver='8', pyshortver='3.8', pyver='3.8.2', start_dir='cpp', sysroot='', toolchain_name='foss', toolchain_version='2020a', version='0.17.1', version_major='0', version_major_minor='0.17', version_minor='17', versionprefix='', versionsuffix='-Python-3.8.2' | |
== 2024-04-24 15:01:14,790 easyblock.py:3991 INFO Running method checksum_step part of step source | |
== 2024-04-24 15:01:14,790 filetools.py:1221 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-04-24 15:01:14,795 filetools.py:1295 DEBUG Computed sha256 checksum for /project/def-maintainers/boegelbot/sources/a/Arrow/apache-arrow-0.17.1.tar.gz: cbc51c343bca08b10f7f1b2ef15cb15057c30e5e9017cfcee18337b7e2da9ea2 (correct checksum: cbc51c343bca08b10f7f1b2ef15cb15057c30e5e9017cfcee18337b7e2da9ea2) | |
== 2024-04-24 15:01:14,795 easyblock.py:2469 INFO Checksum verification for /project/def-maintainers/boegelbot/sources/a/Arrow/apache-arrow-0.17.1.tar.gz using cbc51c343bca08b10f7f1b2ef15cb15057c30e5e9017cfcee18337b7e2da9ea2 passed. | |
== 2024-04-24 15:01:14,795 filetools.py:1221 DEBUG Using blocksize 16777216 for calculating the checksum | |
== 2024-04-24 15:01:14,795 filetools.py:1295 DEBUG Computed sha256 checksum for /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1_fix-arm.patch: d1076d35966056c39e0c88b8fadaaa7660ee4d8c07fc2c5bdf1d5d6e683ff44a (correct checksum: d1076d35966056c39e0c88b8fadaaa7660ee4d8c07fc2c5bdf1d5d6e683ff44a) | |
== 2024-04-24 15:01:14,795 easyblock.py:2469 INFO Checksum verification for /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1_fix-arm.patch using d1076d35966056c39e0c88b8fadaaa7660ee4d8c07fc2c5bdf1d5d6e683ff44a passed. | |
== 2024-04-24 15:01:14,795 easyblock.py:3991 INFO Running method extract_step part of step source | |
== 2024-04-24 15:01:14,795 easyblock.py:2581 INFO Unpacking source apache-arrow-0.17.1.tar.gz | |
== 2024-04-24 15:01:14,795 filetools.py:1918 DEBUG Not creating existing path /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2 | |
== 2024-04-24 15:01:14,795 filetools.py:456 DEBUG Unpacking /project/def-maintainers/boegelbot/sources/a/Arrow/apache-arrow-0.17.1.tar.gz in directory /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2 | |
== 2024-04-24 15:01:14,796 filetools.py:465 DEBUG Using command derived from file extension to unpack {fn}: {cmd} | |
== 2024-04-24 15:01:14,796 run.py:339 INFO run_shell_cmd: Output of "tar xzf /project/def-maintainers/boegelbot/sources/a/Arrow/apache-arrow-0.17.1.tar.gz" will be logged to /tmp/eb-a1hrcbwc/run-shell-cmd-output/tar-gynj2nsz/out.txt | |
== 2024-04-24 15:01:14,796 run.py:374 INFO Path to bash that will be used to run shell commands: /usr/bin/bash | |
== 2024-04-24 15:01:14,796 run.py:396 INFO Running shell command 'tar xzf /project/def-maintainers/boegelbot/sources/a/Arrow/apache-arrow-0.17.1.tar.gz' in /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2 | |
== 2024-04-24 15:01:15,062 run.py:499 INFO Output of 'tar ...' shell command (stdout + stderr): | |
== 2024-04-24 15:01:15,062 run.py:502 INFO Shell command completed successfully (see output above): tar xzf /project/def-maintainers/boegelbot/sources/a/Arrow/apache-arrow-0.17.1.tar.gz | |
== 2024-04-24 15:01:15,063 filetools.py:1349 DEBUG Last dir list ['CODE_OF_CONDUCT.md', 'run-cmake-format.py', 'go', 'CHANGELOG.md', 'python', 'js', 'ci', 'rust', 'r', 'java', 'c_glib', 'docs', 'README.md', 'testing', 'appveyor.yml', 'NOTICE.txt', 'cpp', 'CONTRIBUTING.md', 'matlab', 'format', 'cmake-format.py', 'dev', 'csharp', 'docker-compose.yml', 'Makefile.docker', 'LICENSE.txt', 'header', 'ruby'] | |
== 2024-04-24 15:01:15,063 filetools.py:1350 DEBUG Possible new dir /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2/apache-arrow-0.17.1 found | |
== 2024-04-24 15:01:15,063 build_log.py:267 INFO ... (took < 1 sec) | |
== 2024-04-24 15:01:15,063 easyblock.py:3974 DEBUG Not skipping patch step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-04-24 15:01:15,063 build_log.py:267 INFO patching... | |
== 2024-04-24 15:01:15,063 easyblock.py:3983 INFO Starting patch step | |
== 2024-04-24 15:01:15,063 easyconfig.py:1680 INFO Generating template values... | |
== 2024-04-24 15:01:15,063 templates.py:200 DEBUG config: Arrow EasyConfig @ /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1-foss-2020a-Python-3.8.2.eb | |
== 2024-04-24 15:01:15,064 templates.py:230 DEBUG version found in easyconfig is 0.17.1 | |
== 2024-04-24 15:01:15,064 templates.py:332 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-04-24 15:01:15,064 templates.py:332 DEBUG name: github_account, config: %(namelower)s | |
== 2024-04-24 15:01:15,064 templates.py:332 DEBUG name: name, config: Arrow | |
== 2024-04-24 15:01:15,064 templates.py:332 DEBUG name: parallel, config: 16 | |
== 2024-04-24 15:01:15,064 templates.py:332 DEBUG name: version, config: 0.17.1 | |
== 2024-04-24 15:01:15,064 templates.py:332 DEBUG name: versionsuffix, config: -Python-%(pyver)s | |
== 2024-04-24 15:01:15,064 templates.py:332 DEBUG name: versionprefix, config: | |
== 2024-04-24 15:01:15,064 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-04-24 15:01:15,064 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-04-24 15:01:15,065 easyconfig.py:1699 INFO Template values: arch='x86_64', bitbucket_account='arrow', builddir='/tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_int_comma_sep='80', cuda_int_semicolon_sep='80', cuda_int_space_sep='80', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', github_account='arrow', installdir='/project/def-maintainers/boegelbot/rocky9/zen3/software/Arrow/0.17.1-foss-2020a-Python-3.8.2', module_name='Arrow/0.17.1-foss-2020a-Python-3.8.2', mpi_cmd_prefix='mpirun -n 1', name='Arrow', nameletter='A', nameletterlower='a', namelower='arrow', parallel='16', pymajver='3', pyminver='8', pyshortver='3.8', pyver='3.8.2', start_dir='cpp', sysroot='', toolchain_name='foss', toolchain_version='2020a', version='0.17.1', version_major='0', version_major_minor='0.17', version_minor='17', versionprefix='', versionsuffix='-Python-3.8.2' | |
== 2024-04-24 15:01:15,065 easyblock.py:3991 INFO Running method patch_step part of step patch | |
== 2024-04-24 15:01:15,065 easyblock.py:2599 INFO Applying patch Arrow-0.17.1_fix-arm.patch | |
== 2024-04-24 15:01:15,065 easyblock.py:2611 DEBUG Source index: 0; patch level: None; source path suffix: ; copy patch: <module 'copy' from '/usr/lib64/python3.9/copy.py'> | |
== 2024-04-24 15:01:15,065 easyblock.py:2617 DEBUG Determine begin path for patch Arrow-0.17.1_fix-arm.patch: /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2/apache-arrow-0.17.1 | |
== 2024-04-24 15:01:15,065 easyblock.py:2626 DEBUG Applying patch {'name': 'Arrow-0.17.1_fix-arm.patch', 'postinstall': False, 'path': '/tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1_fix-arm.patch', 'checksum': 'd1076d35966056c39e0c88b8fadaaa7660ee4d8c07fc2c5bdf1d5d6e683ff44a', 'md5': '000e5bee862ec328a865ec40beeb0838', 'sha256': 'd1076d35966056c39e0c88b8fadaaa7660ee4d8c07fc2c5bdf1d5d6e683ff44a'} in path /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2/apache-arrow-0.17.1 | |
== 2024-04-24 15:01:15,065 filetools.py:1602 DEBUG Guessed patch level 1 for patch /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1_fix-arm.patch | |
== 2024-04-24 15:01:15,065 run.py:339 INFO run_shell_cmd: Output of "patch -p1 -i /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1_fix-arm.patch" will be logged to /tmp/eb-a1hrcbwc/run-shell-cmd-output/patch-zcyaxvr8/out.txt | |
== 2024-04-24 15:01:15,066 run.py:374 INFO Path to bash that will be used to run shell commands: /usr/bin/bash | |
== 2024-04-24 15:01:15,066 run.py:396 INFO Running shell command 'patch -p1 -i /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1_fix-arm.patch' in /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2/apache-arrow-0.17.1 | |
== 2024-04-24 15:01:15,074 run.py:499 INFO Output of 'patch ...' shell command (stdout + stderr): | |
patching file cpp/cmake_modules/DefineOptions.cmake | |
Hunk #1 succeeded at 108 (offset -6 lines). | |
patching file python/CMakeLists.txt | |
== 2024-04-24 15:01:15,074 run.py:502 INFO Shell command completed successfully (see output above): patch -p1 -i /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1_fix-arm.patch | |
== 2024-04-24 15:01:15,075 build_log.py:267 INFO ... (took < 1 sec) | |
== 2024-04-24 15:01:15,075 easyblock.py:3974 DEBUG Not skipping prepare step (skippable: False, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
== 2024-04-24 15:01:15,075 build_log.py:267 INFO preparing... | |
== 2024-04-24 15:01:15,075 easyblock.py:3983 INFO Starting prepare step | |
== 2024-04-24 15:01:15,075 easyconfig.py:1680 INFO Generating template values... | |
== 2024-04-24 15:01:15,075 templates.py:200 DEBUG config: Arrow EasyConfig @ /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1-foss-2020a-Python-3.8.2.eb | |
== 2024-04-24 15:01:15,075 templates.py:230 DEBUG version found in easyconfig is 0.17.1 | |
== 2024-04-24 15:01:15,075 templates.py:332 DEBUG name: bitbucket_account, config: %(namelower)s | |
== 2024-04-24 15:01:15,075 templates.py:332 DEBUG name: github_account, config: %(namelower)s | |
== 2024-04-24 15:01:15,075 templates.py:332 DEBUG name: name, config: Arrow | |
== 2024-04-24 15:01:15,075 templates.py:332 DEBUG name: parallel, config: 16 | |
== 2024-04-24 15:01:15,075 templates.py:332 DEBUG name: version, config: 0.17.1 | |
== 2024-04-24 15:01:15,076 templates.py:332 DEBUG name: versionsuffix, config: -Python-%(pyver)s | |
== 2024-04-24 15:01:15,076 templates.py:332 DEBUG name: versionprefix, config: | |
== 2024-04-24 15:01:15,076 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
== 2024-04-24 15:01:15,076 mpi.py:298 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
== 2024-04-24 15:01:15,076 easyconfig.py:1699 INFO Template values: arch='x86_64', bitbucket_account='arrow', builddir='/tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2', cuda_cc_cmake='80', cuda_cc_semicolon_sep='8.0', cuda_cc_space_sep='8.0', cuda_compute_capabilities='8.0', cuda_int_comma_sep='80', cuda_int_semicolon_sep='80', cuda_int_space_sep='80', cuda_sm_comma_sep='sm_80', cuda_sm_space_sep='sm_80', github_account='arrow', installdir='/project/def-maintainers/boegelbot/rocky9/zen3/software/Arrow/0.17.1-foss-2020a-Python-3.8.2', module_name='Arrow/0.17.1-foss-2020a-Python-3.8.2', mpi_cmd_prefix='mpirun -n 1', name='Arrow', nameletter='A', nameletterlower='a', namelower='arrow', parallel='16', pymajver='3', pyminver='8', pyshortver='3.8', pyver='3.8.2', start_dir='cpp', sysroot='', toolchain_name='foss', toolchain_version='2020a', version='0.17.1', version_major='0', version_major_minor='0.17', version_minor='17', versionprefix='', versionsuffix='-Python-3.8.2' | |
== 2024-04-24 15:01:15,076 easyblock.py:3991 INFO Running method prepare_step part of step prepare | |
== 2024-04-24 15:01:15,076 easyconfig.py:2664 DEBUG Determining initial module paths for Arrow EasyConfig @ /tmp/eb-a1hrcbwc/files_pr20414/a/Arrow/Arrow-0.17.1-foss-2020a-Python-3.8.2.eb | |
== 2024-04-24 15:01:15,076 easyconfig.py:2666 DEBUG Obtained initial module paths: [] | |
== 2024-04-24 15:01:15,079 easyconfig.py:1113 DEBUG Dependencies BEFORE filtering: [{'full_mod_name': 'CMake/3.16.4-GCCcore-9.3.0', 'short_mod_name': 'CMake/3.16.4-GCCcore-9.3.0', 'name': 'CMake', 'version': '3.16.4', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Autotools/20180311-GCCcore-9.3.0', 'short_mod_name': 'Autotools/20180311-GCCcore-9.3.0', 'name': 'Autotools', 'version': '20180311', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'flex/2.6.4-GCCcore-9.3.0', 'short_mod_name': 'flex/2.6.4-GCCcore-9.3.0', 'name': 'flex', 'version': '2.6.4', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Bison/3.5.3-GCCcore-9.3.0', 'short_mod_name': 'Bison/3.5.3-GCCcore-9.3.0', 'name': 'Bison', 'version': '3.5.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'pkg-config/0.29.2-GCCcore-9.3.0', 'short_mod_name': 'pkg-config/0.29.2-GCCcore-9.3.0', 'name': 'pkg-config', 'version': '0.29.2', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Python/3.8.2-GCCcore-9.3.0', 'short_mod_name': 'Python/3.8.2-GCCcore-9.3.0', 'name': 'Python', 'version': '3.8.2', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'SciPy-bundle/2020.03-foss-2020a-Python-3.8.2', 'short_mod_name': 'SciPy-bundle/2020.03-foss-2020a-Python-3.8.2', 'name': 'SciPy-bundle', 'version': '2020.03', 'versionsuffix': '-Python-3.8.2', 'toolchain': {'name': 'foss', 'version': '2020a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Boost/1.72.0-gompi-2020a', 'short_mod_name': 'Boost/1.72.0-gompi-2020a', 'name': 'Boost', 'version': '1.72.0', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2020a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
== 2024-04-24 15:01:15,079 easyconfig.py:1116 DEBUG Dependencies AFTER filtering: [{'full_mod_name': 'CMake/3.16.4-GCCcore-9.3.0', 'short_mod_name': 'CMake/3.16.4-GCCcore-9.3.0', 'name': 'CMake', 'version': '3.16.4', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Autotools/20180311-GCCcore-9.3.0', 'short_mod_name': 'Autotools/20180311-GCCcore-9.3.0', 'name': 'Autotools', 'version': '20180311', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'flex/2.6.4-GCCcore-9.3.0', 'short_mod_name': 'flex/2.6.4-GCCcore-9.3.0', 'name': 'flex', 'version': '2.6.4', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Bison/3.5.3-GCCcore-9.3.0', 'short_mod_name': 'Bison/3.5.3-GCCcore-9.3.0', 'name': 'Bison', 'version': '3.5.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'pkg-config/0.29.2-GCCcore-9.3.0', 'short_mod_name': 'pkg-config/0.29.2-GCCcore-9.3.0', 'name': 'pkg-config', 'version': '0.29.2', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Python/3.8.2-GCCcore-9.3.0', 'short_mod_name': 'Python/3.8.2-GCCcore-9.3.0', 'name': 'Python', 'version': '3.8.2', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'SciPy-bundle/2020.03-foss-2020a-Python-3.8.2', 'short_mod_name': 'SciPy-bundle/2020.03-foss-2020a-Python-3.8.2', 'name': 'SciPy-bundle', 'version': '2020.03', 'versionsuffix': '-Python-3.8.2', 'toolchain': {'name': 'foss', 'version': '2020a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Boost/1.72.0-gompi-2020a', 'short_mod_name': 'Boost/1.72.0-gompi-2020a', 'name': 'Boost', 'version': '1.72.0', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2020a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
== 2024-04-24 15:01:15,079 toolchain.py:517 DEBUG _check_dependencies: adding toolchain dependencies [{'full_mod_name': 'CMake/3.16.4-GCCcore-9.3.0', 'short_mod_name': 'CMake/3.16.4-GCCcore-9.3.0', 'name': 'CMake', 'version': '3.16.4', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Autotools/20180311-GCCcore-9.3.0', 'short_mod_name': 'Autotools/20180311-GCCcore-9.3.0', 'name': 'Autotools', 'version': '20180311', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'flex/2.6.4-GCCcore-9.3.0', 'short_mod_name': 'flex/2.6.4-GCCcore-9.3.0', 'name': 'flex', 'version': '2.6.4', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Bison/3.5.3-GCCcore-9.3.0', 'short_mod_name': 'Bison/3.5.3-GCCcore-9.3.0', 'name': 'Bison', 'version': '3.5.3', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'pkg-config/0.29.2-GCCcore-9.3.0', 'short_mod_name': 'pkg-config/0.29.2-GCCcore-9.3.0', 'name': 'pkg-config', 'version': '0.29.2', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': True, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Python/3.8.2-GCCcore-9.3.0', 'short_mod_name': 'Python/3.8.2-GCCcore-9.3.0', 'name': 'Python', 'version': '3.8.2', 'versionsuffix': '', 'toolchain': {'name': 'GCCcore', 'version': '9.3.0'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'SciPy-bundle/2020.03-foss-2020a-Python-3.8.2', 'short_mod_name': 'SciPy-bundle/2020.03-foss-2020a-Python-3.8.2', 'name': 'SciPy-bundle', 'version': '2020.03', 'versionsuffix': '-Python-3.8.2', 'toolchain': {'name': 'foss', 'version': '2020a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}, {'full_mod_name': 'Boost/1.72.0-gompi-2020a', 'short_mod_name': 'Boost/1.72.0-gompi-2020a', 'name': 'Boost', 'version': '1.72.0', 'versionsuffix': '', 'toolchain': {'name': 'gompi', 'version': '2020a'}, 'toolchain_inherited': False, 'system': False, 'hidden': False, 'build_only': False, 'external_module': False, 'external_module_metadata': {}}] | |
== 2024-04-24 15:01:15,079 toolchain.py:527 DEBUG _check_dependencies: MODULEPATH: /project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
== 2024-04-24 15:01:15,079 modules.py:479 DEBUG Found cached result for 'module avail' with key '('MODULEPATH=/project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', '--show-hidden')': ['4ti2/1.6.9-GCC-11.3.0', 'ABINIT/9.6.2-foss-2022a', 'ABySS/2.3.7-foss-2023a', 'AFNI/24.0.02-foss-2023a', 'AICSImageIO/4.14.0-foss-2022a', 'AMICA/2024.1.19-intel-2023a', 'AMOS/3.1.0-foss-2021b', 'AMOS/3.1.0-foss-2023a', 'AMPtk/1.5.4-foss-2021b', 'AMRFinderPlus/3.11.18-gompi-2021b', 'ANIcalculator/1.0-GCCcore-11.3.0', 'ANTIC/0.2.5-gfbf-2022a', 'ANTLR/2.7.7-GCCcore-10.3.0-Java-11', 'ANTLR/2.7.7-GCCcore-11.3.0-Java-11', 'AOFlagger/3.4.0-foss-2022a', 'AOFlagger/3.4.0-foss-2023b', 'ASAP3/3.13.2-foss-2023a', 'ASAP3/3.13.3-foss-2023a', 'ASAP3/3.13.3-intel-2023a', 'ASCAT/3.1.2-foss-2022a-R-4.2.1', 'ASE/3.22.1-foss-2022a', 'ASE/3.22.1-gfbf-2023a', 'ASE/3.22.1-iimkl-2023a', 'ASE/3.22.1-intel-2022a', 'ASF-SearchAPI/6.5.0-foss-2022a', 'ATK/2.36.0-GCCcore-10.3.0', 'ATK/2.36.0-GCCcore-11.2.0', 'ATK/2.38.0-GCCcore-11.3.0', 'ATK/2.38.0-GCCcore-12.2.0', 'ATK/2.38.0-GCCcore-12.3.0', 'ATK/2.38.0-GCCcore-13.2.0', 'AUGUSTUS/3.4.0-foss-2021b', 'AUGUSTUS/3.5.0-foss-2022a', 'Abseil/20210324.2-GCCcore-11.2.0', 'Abseil/20230125.2-GCCcore-11.3.0', 'Abseil/20230125.2-GCCcore-12.2.0', 'Abseil/20230125.3-GCCcore-12.3.0', 'Abseil/20240116.1-GCCcore-13.2.0', 'AdapterRemoval/2.3.3-GCC-11.3.0', 'Albumentations/1.3.0-foss-2022a', 'Albumentations/1.3.0-foss-2022a-CUDA-11.7.0', 'AmberTools/22.3-foss-2021b', 'Anaconda2/2019.10', 'Anaconda3/2023.09-0', 'Annocript/2.0-foss-2022a', 'Arb/2.22.1-foss-2021b', 'Arb/2.23.0-gfbf-2022a', 'Arcade-Learning-Environment/0.7.3-foss-2021b', 'Arcade-Learning-Environment/0.8.1-foss-2022a', 'ArchR/1.0.2-foss-2023a-R-4.3.2', 'Archive-Zip/1.68-GCCcore-12.2.0', 'Armadillo/11.4.3-foss-2022a', 'Armadillo/11.4.3-foss-2022b', 'Armadillo/12.6.2-foss-2023a', 'Armadillo/12.8.0-foss-2023b', 'Arrow/11.0.0-gfbf-2022b', 'Arrow/14.0.1-gfbf-2023a', 'Arrow/6.0.0-foss-2021a', 'Arrow/6.0.0-foss-2021b', 'Arrow/6.0.1-foss-2021a', 'Arrow/8.0.0-foss-2021a', 'Arrow/8.0.0-foss-2021b', 'Arrow/8.0.0-foss-2022.05', 'Arrow/8.0.0-foss-2022a', 'ArviZ/0.16.1-foss-2023a', 'AutoDock-Vina/1.2.3-foss-2021b', 'Autoconf/2.69-GCCcore-10.2.0', 'Autoconf/2.69-GCCcore-9.3.0', 'Autoconf/2.71', 'Autoconf/2.71-GCCcore-10.3.0', 'Autoconf/2.71-GCCcore-11.2.0', 'Autoconf/2.71-GCCcore-11.3.0', 'Autoconf/2.71-GCCcore-12.2.0', 'Autoconf/2.71-GCCcore-12.3.0', 'Autoconf/2.71-GCCcore-13.2.0', 'Automake/1.16.1-GCCcore-9.3.0', 'Automake/1.16.2-GCCcore-10.2.0', 'Automake/1.16.3-GCCcore-10.3.0', 'Automake/1.16.4-GCCcore-11.2.0', 'Automake/1.16.5', 'Automake/1.16.5-GCCcore-11.3.0', 'Automake/1.16.5-GCCcore-12.2.0', 'Automake/1.16.5-GCCcore-12.3.0', 'Automake/1.16.5-GCCcore-13.2.0', 'Autotools/20180311-GCCcore-9.3.0', 'Autotools/20200321-GCCcore-10.2.0', 'Autotools/20210128-GCCcore-10.3.0', 'Autotools/20210726-GCCcore-11.2.0', 'Autotools/20220317', 'Autotools/20220317-GCCcore-11.3.0', 'Autotools/20220317-GCCcore-12.2.0', 'Autotools/20220317-GCCcore-12.3.0', 'Autotools/20220317-GCCcore-13.2.0', 'BBMap/39.01-GCC-11.3.0', 'BBMap/39.01-GCC-12.2.0', 'BCFtools/1.12-GCC-10.3.0', 'BCFtools/1.14-GCC-11.2.0', 'BCFtools/1.15.1-GCC-11.3.0', 'BCFtools/1.17-GCC-12.2.0', 'BCFtools/1.18-GCC-12.3.0', 'BCFtools/1.19-GCC-13.2.0', 'BEDOPS/2.4.41-foss-2021b', 'BEDTools/2.30.0-GCC-11.2.0', 'BEDTools/2.30.0-GCC-11.3.0', 'BEDTools/2.30.0-GCC-12.2.0', 'BEDTools/2.31.0-GCC-12.3.0', 'BLAST+/2.11.0-gompi-2021a', 'BLAST+/2.12.0-gompi-2021b', 'BLAST+/2.13.0-gompi-2022a', 'BLAST+/2.14.1-gompi-2023a', 'BLAST+/2.9.0-gompi-2021b', 'BLAT/3.7-GCC-11.2.0', 'BLAT/3.7-GCC-11.3.0', 'BLIS/0.8.1-GCC-10.3.0', 'BLIS/0.8.1-GCC-11.2.0', 'BLIS/0.9.0-GCC-11.3.0', 'BLIS/0.9.0-GCC-12.2.0', 'BLIS/0.9.0-GCC-12.3.0', 'BLIS/0.9.0-GCC-13.2.0', 'BRAKER/2.1.6-foss-2021b', 'BRAKER/2.1.6-foss-2022a', 'BUSCO/5.4.5-foss-2022a', 'BWA/0.7.17-20220923-GCCcore-12.3.0', 'BWA/0.7.17-GCC-10.3.0', 'BWA/0.7.17-GCCcore-11.2.0', 'BWA/0.7.17-GCCcore-12.2.0', 'BWA/0.7.17-GCCcore-12.3.0', 'BamTools/2.5.2-GCC-10.3.0', 'BamTools/2.5.2-GCC-11.2.0', 'BamTools/2.5.2-GCC-11.3.0', 'BamTools/2.5.2-GCC-12.2.0', 'BamTools/2.5.2-GCC-12.3.0', 'Bandage/0.9.0-GCCcore-11.2.0', 'Bandage/0.9.0-GCCcore-11.3.0', 'BayesPrism/2.0-foss-2022a-R-4.2.1', 'Bazel/3.7.2-GCCcore-10.3.0', 'Bazel/3.7.2-GCCcore-11.2.0', 'Bazel/4.2.2-GCCcore-11.2.0', 'Bazel/5.1.1-GCCcore-11.3.0', 'Bazel/6.3.1-GCCcore-12.2.0', 'Bazel/6.3.1-GCCcore-12.3.0', 'BeautifulSoup/4.10.0-GCCcore-10.3.0', 'BeautifulSoup/4.10.0-GCCcore-11.3.0', 'BeautifulSoup/4.11.1-GCCcore-12.2.0', 'BeautifulSoup/4.12.2-GCCcore-12.3.0', 'BerkeleyGW/4.0-foss-2022a', 'BigDFT/1.9.1-foss-2021b', 'Bio-DB-HTS/3.01-GCC-12.2.0', 'Bio-SearchIO-hmmer/1.7.3-GCC-11.3.0', 'Bio-SearchIO-hmmer/1.7.3-GCC-12.2.0', 'BioPerl/1.7.8-GCCcore-11.2.0', 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'tbb/2020.3-GCCcore-10.3.0', 'tbb/2020.3-GCCcore-11.2.0', 'tbb/2020.3-GCCcore-12.3.0', 'tbb/2021.10.0-GCCcore-12.2.0', 'tbb/2021.11.0-GCCcore-12.3.0', 'tbb/2021.5.0-GCCcore-11.3.0', 'tbl2asn/20220427-linux64', 'tbl2asn/20230713-linux64', 'tcsh/6.24.01-GCCcore-11.3.0', 'tcsh/6.24.07-GCCcore-12.2.0', 'tcsh/6.24.10-GCCcore-12.3.0', 'tensorboard/2.10.0-foss-2022a', 'tensorboard/2.15.1-gfbf-2023a', 'tensorboardX/2.5.1-foss-2022a', 'tensorboardX/2.6.2.2-foss-2023a', 'tensorflow-probability/0.20.0-foss-2023a', 'tesseract/5.3.0-GCCcore-11.3.0', 'thirdorder/1.1.1-foss-2022a', 'tiktoken/0.6.0-GCCcore-12.3.0', 'time/1.9-GCCcore-11.3.0', 'time/1.9-GCCcore-12.2.0', 'tokenizers/0.13.3-GCCcore-12.2.0', 'torchvision/0.13.1-foss-2022a', 'torchvision/0.16.0-foss-2023a', 'tornado/6.3.2-GCCcore-12.3.0', 'tqdm/4.61.2-GCCcore-10.3.0', 'tqdm/4.62.3-GCCcore-11.2.0', 'tqdm/4.64.0-GCCcore-11.3.0', 'tqdm/4.64.1-GCCcore-12.2.0', 'tqdm/4.66.1-GCCcore-12.3.0', 'tqdm/4.66.2-GCCcore-13.2.0', 'trimAl/1.4.1-GCCcore-11.3.0', 'trimAl/1.4.1-GCCcore-12.3.0', 'trimesh/3.17.1-foss-2022a', 'trimesh/3.21.5-gfbf-2022b', 'tseriesEntropy/0.6-0-foss-2022a-R-4.2.1', 'typing-extensions/3.10.0.0-GCCcore-10.3.0', 'typing-extensions/3.10.0.2-GCCcore-11.2.0', 'typing-extensions/4.10.0-GCCcore-13.2.0', 'typing-extensions/4.3.0-GCCcore-11.3.0', 'typing-extensions/4.8.0-GCCcore-12.3.0', 'typing-extensions/4.9.0-GCCcore-12.2.0', 'typing-extensions/4.9.0-GCCcore-12.3.0', 'umap-learn/0.5.3-foss-2021b', 'umap-learn/0.5.3-foss-2022a', 'umap-learn/0.5.5-foss-2023a', 'uncertainties/3.1.7-foss-2021b', 'uncertainties/3.1.7-foss-2023a', 'unifdef/2.12-GCCcore-11.3.0', 'unimap/0.1-GCCcore-11.3.0', 'utf8proc/2.6.1-GCCcore-10.3.0', 'utf8proc/2.6.1-GCCcore-11.2.0', 'utf8proc/2.7.0-GCCcore-11.3.0', 'utf8proc/2.8.0-GCCcore-12.2.0', 'utf8proc/2.8.0-GCCcore-12.3.0', 'util-linux/2.35-GCCcore-9.3.0', 'util-linux/2.36-GCCcore-10.2.0', 'util-linux/2.36-GCCcore-10.3.0', 'util-linux/2.37-GCCcore-11.2.0', 'util-linux/2.38-GCCcore-11.3.0', 'util-linux/2.38.1-GCCcore-12.2.0', 'util-linux/2.39-GCCcore-12.3.0', 'util-linux/2.39-GCCcore-13.2.0', 'vConTACT2/0.11.3-foss-2022a', 'vcflib/1.0.3-foss-2021b-R-4.1.2', 'vcflib/1.0.9-foss-2022a-R-4.2.1', 'velocyto/0.17.17-foss-2022a', 'virtualenv/20.23.1-GCCcore-12.3.0', 'virtualenv/20.24.6-GCCcore-13.2.0', 'visdom/0.2.4-foss-2022a', 'vispr/0.4.14-foss-2022a', 'vitessce-python/20230222-foss-2022a', 'vitessceR/0.99.0-20230110-foss-2022a-R-4.2.1', 'vt/0.57721-GCC-11.2.0', 'waLBerla/6.1-foss-2022b', 'wandb/0.13.4-GCCcore-11.3.0', 'wandb/0.16.1-GCC-12.3.0', 'wget/1.21.1-GCCcore-10.3.0', 'wget/1.21.2-GCCcore-11.2.0', 'wget/1.21.3-GCCcore-11.3.0', 'wget/1.21.4-GCCcore-13.2.0', 'wgsim/20111017-GCC-11.2.0', 'wpebackend-fdo/1.13.1-GCCcore-11.2.0', 'wpebackend-fdo/1.14.1-GCCcore-11.3.0', 'wrapt/1.15.0-foss-2022a', 'wrapt/1.15.0-gfbf-2022b', 'wrapt/1.15.0-gfbf-2023a', 'wrapt/1.15.0-intel-2022a', 'wxPython/4.2.1-foss-2022a', 'wxWidgets/3.1.5-GCC-10.3.0', 'wxWidgets/3.2.0-GCC-11.2.0', 'wxWidgets/3.2.1-GCC-11.3.0', 'wxWidgets/3.2.2.1-GCC-12.2.0', 'wxWidgets/3.2.2.1-GCC-12.3.0', 'x264/20210414-GCCcore-10.3.0', 'x264/20210613-GCCcore-11.2.0', 'x264/20220620-GCCcore-11.3.0', 'x264/20230226-GCCcore-12.2.0', 'x264/20230226-GCCcore-12.3.0', 'x264/20231019-GCCcore-13.2.0', 'x265/3.5-GCCcore-10.3.0', 'x265/3.5-GCCcore-11.2.0', 'x265/3.5-GCCcore-11.3.0', 'x265/3.5-GCCcore-12.2.0', 'x265/3.5-GCCcore-12.3.0', 'x265/3.5-GCCcore-13.2.0', 'xarray/0.20.1-foss-2021b', 'xarray/2022.6.0-foss-2022a', 'xarray/2023.4.2-gfbf-2022b', 'xarray/2023.8.0-gfbf-2023a', 'xarray/2023.9.0-gfbf-2023a', 'xorg-macros/1.19.2-GCCcore-10.2.0', 'xorg-macros/1.19.2-GCCcore-9.3.0', 'xorg-macros/1.19.3-GCCcore-10.3.0', 'xorg-macros/1.19.3-GCCcore-11.2.0', 'xorg-macros/1.19.3-GCCcore-11.3.0', 'xorg-macros/1.19.3-GCCcore-12.2.0', 'xorg-macros/1.20.0-GCCcore-12.3.0', 'xorg-macros/1.20.0-GCCcore-13.2.0', 'xpdf/4.04-GCCcore-12.3.0', 'xprop/1.2.5-GCCcore-10.3.0', 'xprop/1.2.5-GCCcore-11.3.0', 'xprop/1.2.6-GCCcore-12.3.0', 'xtb/6.4.1-foss-2021b', 'xtb/6.4.1-intel-2021a', 'xtb/6.5.0-foss-2021b', 'xtb/6.6.0-foss-2022a', 'xtb/6.6.1-gfbf-2023a', 'xtb/6.7.0-gfbf-2023a', 'xtensor/0.24.0-foss-2021b', 'xxHash/0.8.2-GCCcore-12.3.0', 'xxd/8.2.4220-GCCcore-10.3.0', 'xxd/8.2.4220-GCCcore-11.2.0', 'xxd/8.2.4220-GCCcore-11.3.0', 'xxd/9.0.1696-GCCcore-12.2.0', 'xxd/9.0.2112-GCCcore-12.3.0', 'xxd/9.1.0307-GCCcore-13.2.0', 'yaff/1.6.0-foss-2023a', 'yaml-cpp/0.7.0-GCCcore-11.3.0', 'yaml-cpp/0.7.0-GCCcore-12.3.0', 'yt/4.3.0-foss-2022a', 'zUMIs/2.9.7-foss-2023a-R-4.3.2', 'zarr/2.13.3-foss-2021b', 'zarr/2.13.3-foss-2022a', 'zarr/2.17.1-foss-2023a', 'zfp/1.0.0-GCCcore-11.3.0', 'zlib-ng/2.0.7-GCCcore-11.3.0', 'zlib/1.2.11', 'zlib/1.2.11-GCCcore-10.2.0', 'zlib/1.2.11-GCCcore-10.3.0', 'zlib/1.2.11-GCCcore-11.2.0', 'zlib/1.2.11-GCCcore-9.3.0', 'zlib/1.2.12', 'zlib/1.2.12-GCCcore-11.3.0', 'zlib/1.2.12-GCCcore-12.2.0', 'zlib/1.2.13', 'zlib/1.2.13-GCCcore-12.3.0', 'zlib/1.2.13-GCCcore-13.1.0', 'zlib/1.2.13-GCCcore-13.2.0', 'zstd/1.4.4-GCCcore-9.3.0', 'zstd/1.4.5-GCCcore-10.2.0', 'zstd/1.4.9-GCCcore-10.3.0', 'zstd/1.5.0-GCCcore-11.2.0', 'zstd/1.5.2-GCCcore-11.3.0', 'zstd/1.5.2-GCCcore-12.2.0', 'zstd/1.5.5-GCCcore-12.3.0', 'zstd/1.5.5-GCCcore-13.2.0'] | |
== 2024-04-24 15:01:15,082 modules.py:611 INFO Checking whether CMake/3.16.4-GCCcore-9.3.0 exists... | |
== 2024-04-24 15:01:15,082 modules.py:618 INFO Module CMake/3.16.4-GCCcore-9.3.0 not found in list of available modules, checking via 'module show'... | |
== 2024-04-24 15:01:15,082 modules.py:555 DEBUG Checking whether CMake/3.16.4-GCCcore-9.3.0 exists based on output of 'module show' | |
== 2024-04-24 15:01:15,082 modules.py:702 DEBUG Found cached result for 'module show CMake/3.16.4-GCCcore-9.3.0' with key '('MODULEPATH=/project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', 'CMake/3.16.4-GCCcore-9.3.0')': | |
== 2024-04-24 15:01:15,082 modules.py:565 DEBUG Checking line '' to determine whether CMake/3.16.4-GCCcore-9.3.0 exists... | |
== 2024-04-24 15:01:15,082 modules.py:569 DEBUG Treating line '' as whitespace, so skipping it | |
== 2024-04-24 15:01:15,082 modules.py:632 INFO Module CMake/3.16.4-GCCcore-9.3.0 not found via module avail/show, checking whether it is a wrapper | |
== 2024-04-24 15:01:15,082 modules.py:639 INFO Result for existence check of CMake/3.16.4-GCCcore-9.3.0 module: False | |
== 2024-04-24 15:01:15,082 modules.py:611 INFO Checking whether Autotools/20180311-GCCcore-9.3.0 exists... | |
== 2024-04-24 15:01:15,082 modules.py:616 INFO Module Autotools/20180311-GCCcore-9.3.0 exists (found in list of available modules) | |
== 2024-04-24 15:01:15,082 modules.py:639 INFO Result for existence check of Autotools/20180311-GCCcore-9.3.0 module: True | |
== 2024-04-24 15:01:15,082 modules.py:611 INFO Checking whether flex/2.6.4-GCCcore-9.3.0 exists... | |
== 2024-04-24 15:01:15,083 modules.py:616 INFO Module flex/2.6.4-GCCcore-9.3.0 exists (found in list of available modules) | |
== 2024-04-24 15:01:15,083 modules.py:639 INFO Result for existence check of flex/2.6.4-GCCcore-9.3.0 module: True | |
== 2024-04-24 15:01:15,083 modules.py:611 INFO Checking whether Bison/3.5.3-GCCcore-9.3.0 exists... | |
== 2024-04-24 15:01:15,083 modules.py:616 INFO Module Bison/3.5.3-GCCcore-9.3.0 exists (found in list of available modules) | |
== 2024-04-24 15:01:15,083 modules.py:639 INFO Result for existence check of Bison/3.5.3-GCCcore-9.3.0 module: True | |
== 2024-04-24 15:01:15,083 modules.py:611 INFO Checking whether pkg-config/0.29.2-GCCcore-9.3.0 exists... | |
== 2024-04-24 15:01:15,083 modules.py:616 INFO Module pkg-config/0.29.2-GCCcore-9.3.0 exists (found in list of available modules) | |
== 2024-04-24 15:01:15,083 modules.py:639 INFO Result for existence check of pkg-config/0.29.2-GCCcore-9.3.0 module: True | |
== 2024-04-24 15:01:15,083 modules.py:611 INFO Checking whether Python/3.8.2-GCCcore-9.3.0 exists... | |
== 2024-04-24 15:01:15,083 modules.py:618 INFO Module Python/3.8.2-GCCcore-9.3.0 not found in list of available modules, checking via 'module show'... | |
== 2024-04-24 15:01:15,083 modules.py:555 DEBUG Checking whether Python/3.8.2-GCCcore-9.3.0 exists based on output of 'module show' | |
== 2024-04-24 15:01:15,083 modules.py:702 DEBUG Found cached result for 'module show Python/3.8.2-GCCcore-9.3.0' with key '('MODULEPATH=/project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', 'Python/3.8.2-GCCcore-9.3.0')': | |
== 2024-04-24 15:01:15,083 modules.py:565 DEBUG Checking line '' to determine whether Python/3.8.2-GCCcore-9.3.0 exists... | |
== 2024-04-24 15:01:15,083 modules.py:569 DEBUG Treating line '' as whitespace, so skipping it | |
== 2024-04-24 15:01:15,083 modules.py:632 INFO Module Python/3.8.2-GCCcore-9.3.0 not found via module avail/show, checking whether it is a wrapper | |
== 2024-04-24 15:01:15,084 modules.py:639 INFO Result for existence check of Python/3.8.2-GCCcore-9.3.0 module: False | |
== 2024-04-24 15:01:15,084 modules.py:611 INFO Checking whether SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 exists... | |
== 2024-04-24 15:01:15,084 modules.py:618 INFO Module SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 not found in list of available modules, checking via 'module show'... | |
== 2024-04-24 15:01:15,084 modules.py:555 DEBUG Checking whether SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 exists based on output of 'module show' | |
== 2024-04-24 15:01:15,084 modules.py:797 DEBUG Current MODULEPATH: /project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
== 2024-04-24 15:01:15,084 modules.py:806 DEBUG Changing LD_LIBRARY_PATH from '/opt/software/slurm/lib64' to '/opt/software/slurm/lib64:/opt/software/slurm/lib64' in environment for module command | |
== 2024-04-24 15:01:15,084 run.py:396 INFO Running shell command '/usr/share/lmod/lmod/libexec/lmod python show SciPy-bundle/2020.03-foss-2020a-Python-3.8.2' in /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2/apache-arrow-0.17.1 | |
== 2024-04-24 15:01:15,782 run.py:496 INFO Output of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stdout only): | |
import os | |
os.environ["MODULEPATH"] = "/project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "cmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsCn0K"; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
_mlstatus = True | |
== 2024-04-24 15:01:15,782 run.py:497 INFO Warnings and errors of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stderr only): | |
== 2024-04-24 15:01:15,782 run.py:502 INFO Shell command completed successfully (see output above): /usr/share/lmod/lmod/libexec/lmod python show SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 | |
== 2024-04-24 15:01:15,782 modules.py:818 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python show SciPy-bundle/2020.03-foss-2020a-Python-3.8.2': stdout: import os | |
os.environ["MODULEPATH"] = "/project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "cmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsCn0K"; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
_mlstatus = True | |
; stderr: | |
== 2024-04-24 15:01:15,783 modules.py:706 DEBUG Cached result for 'module show SciPy-bundle/2020.03-foss-2020a-Python-3.8.2' with key '('MODULEPATH=/project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', 'SciPy-bundle/2020.03-foss-2020a-Python-3.8.2')': | |
== 2024-04-24 15:01:15,783 modules.py:565 DEBUG Checking line '' to determine whether SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 exists... | |
== 2024-04-24 15:01:15,783 modules.py:569 DEBUG Treating line '' as whitespace, so skipping it | |
== 2024-04-24 15:01:15,783 modules.py:632 INFO Module SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 not found via module avail/show, checking whether it is a wrapper | |
== 2024-04-24 15:01:15,784 modules.py:639 INFO Result for existence check of SciPy-bundle/2020.03-foss-2020a-Python-3.8.2 module: False | |
== 2024-04-24 15:01:15,784 modules.py:611 INFO Checking whether Boost/1.72.0-gompi-2020a exists... | |
== 2024-04-24 15:01:15,785 modules.py:618 INFO Module Boost/1.72.0-gompi-2020a not found in list of available modules, checking via 'module show'... | |
== 2024-04-24 15:01:15,785 modules.py:555 DEBUG Checking whether Boost/1.72.0-gompi-2020a exists based on output of 'module show' | |
== 2024-04-24 15:01:15,785 modules.py:797 DEBUG Current MODULEPATH: /project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core | |
== 2024-04-24 15:01:15,785 modules.py:806 DEBUG Changing LD_LIBRARY_PATH from '/opt/software/slurm/lib64' to '/opt/software/slurm/lib64:/opt/software/slurm/lib64' in environment for module command | |
== 2024-04-24 15:01:15,785 run.py:396 INFO Running shell command '/usr/share/lmod/lmod/libexec/lmod python show Boost/1.72.0-gompi-2020a' in /tmp/boegelbot/Arrow/0.17.1/foss-2020a-Python-3.8.2/apache-arrow-0.17.1 | |
== 2024-04-24 15:01:16,496 run.py:496 INFO Output of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stdout only): | |
import os | |
os.environ["MODULEPATH"] = "/project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core"; | |
os.environ["_ModuleTable001_"] = "X01vZHVsZVRhYmxlXyA9IHsKTVR2ZXJzaW9uID0gMywKY19yZWJ1aWxkVGltZSA9IGZhbHNlLApjX3Nob3J0VGltZSA9IGZhbHNlLApkZXB0aFQgPSB7fSwKZmFtaWx5ID0ge30sCm1UID0ge30sCm1wYXRoQSA9IHsKIi9wcm9qZWN0L2RlZi1tYWludGFpbmVycy9ib2VnZWxib3Qvcm9ja3k5L3plbjMvbW9kdWxlcy9hbGwiCiwgIi9ldGMvbW9kdWxlZmlsZXMiLCAiL3Vzci9zaGFyZS9tb2R1bGVmaWxlcyIsICIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0xpbnV4IgosICIvdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmUiLCAiL3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsCn0sCnN5c3RlbUJhc2VNUEFUSCA9ICIvZXRjL21vZHVsZWZpbGVzOi91c3Ivc2hh"; | |
os.environ["_ModuleTable002_"] = "cmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsCn0K"; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
_mlstatus = True | |
== 2024-04-24 15:01:16,496 run.py:497 INFO Warnings and errors of '/usr/share/lmod/lmod/libexec/lmod ...' shell command (stderr only): | |
== 2024-04-24 15:01:16,496 run.py:502 INFO Shell command completed successfully (see output above): /usr/share/lmod/lmod/libexec/lmod python show Boost/1.72.0-gompi-2020a | |
== 2024-04-24 15:01:16,496 modules.py:818 DEBUG Output of module command '/usr/share/lmod/lmod/libexec/lmod python show Boost/1.72.0-gompi-2020a': stdout: import os | |
os.environ["MODULEPATH"] = "/project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core"; | |
os.environ["_ModuleTable001_"] = "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"; | |
os.environ["_ModuleTable002_"] = "cmUvbW9kdWxlZmlsZXM6L3Vzci9zaGFyZS9tb2R1bGVmaWxlcy9MaW51eDovdXNyL3NoYXJlL21vZHVsZWZpbGVzL0NvcmU6L3Vzci9zaGFyZS9sbW9kL2xtb2QvbW9kdWxlZmlsZXMvQ29yZSIsCn0K"; | |
os.environ["_ModuleTable_Sz_"] = "2"; | |
_mlstatus = True | |
; stderr: | |
== 2024-04-24 15:01:16,496 modules.py:706 DEBUG Cached result for 'module show Boost/1.72.0-gompi-2020a' with key '('MODULEPATH=/project/def-maintainers/boegelbot/rocky9/zen3/modules/all:/etc/modulefiles:/usr/share/modulefiles:/usr/share/modulefiles/Linux:/usr/share/modulefiles/Core:/usr/share/lmod/lmod/modulefiles/Core', 'lmod', 'Boost/1.72.0-gompi-2020a')': | |
== 2024-04-24 15:01:16,496 modules.py:565 DEBUG Checking line '' to determine whether Boost/1.72.0-gompi-2020a exists... | |
== 2024-04-24 15:01:16,496 modules.py:569 DEBUG Treating line '' as whitespace, so skipping it | |
== 2024-04-24 15:01:16,497 modules.py:632 INFO Module Boost/1.72.0-gompi-2020a not found via module avail/show, checking whether it is a wrapper | |
== 2024-04-24 15:01:16,498 modules.py:639 INFO Result for existence check of Boost/1.72.0-gompi-2020a module: False | |
== 2024-04-24 15:01:16,501 build_log.py:171 ERROR EasyBuild encountered an error (at easybuild/5.0.x/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): Missing modules for dependencies (use --robot?): CMake/3.16.4-GCCcore-9.3.0, Python/3.8.2-GCCcore-9.3.0, SciPy-bundle/2020.03-foss-2020a-Python-3.8.2, Boost/1.72.0-gompi-2020a (at easybuild/5.0.x/easybuild-framework/easybuild/tools/toolchain/toolchain.py:553 in _check_dependencies) | |
== 2024-04-24 15:01:16,501 build_log.py:267 INFO ... (took 1 secs) | |
== 2024-04-24 15:01:16,502 config.py:692 DEBUG software install path as specified by 'installpath' and 'subdir_software': /project/def-maintainers/boegelbot/rocky9/zen3/software | |
== 2024-04-24 15:01:16,502 filetools.py:1984 INFO Removing lock /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_Arrow_0.17.1-foss-2020a-Python-3.8.2.lock... | |
== 2024-04-24 15:01:16,503 filetools.py:384 INFO Path /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_Arrow_0.17.1-foss-2020a-Python-3.8.2.lock successfully removed. | |
== 2024-04-24 15:01:16,503 filetools.py:1988 INFO Lock removed: /project/def-maintainers/boegelbot/rocky9/zen3/software/.locks/_project_def-maintainers_boegelbot_rocky9_zen3_software_Arrow_0.17.1-foss-2020a-Python-3.8.2.lock | |
== 2024-04-24 15:01:16,503 easyblock.py:329 INFO Closing log for application name Arrow version 0.17.1 |
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