Created
June 25, 2024 14:16
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(partial) EasyBuild log for failed build of /tmp/eb-sx9n5wkl/files_pr20901/g/GDAL/GDAL-3.7.1-foss-2023a.eb (PR(s) #20901)
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| == 2024-06-25 14:11:54,960 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_DIR to /project/boegelbot/Rocky8/haswell/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 | |
| == 2024-06-25 14:11:54,960 environment.py:93 INFO Environment variable MPI_LIB_DIR set to /project/boegelbot/Rocky8/haswell/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previously undefined) | |
| == 2024-06-25 14:11:54,960 environment.py:93 INFO Environment variable EBVARMPI_LIB_DIR set to /project/boegelbot/Rocky8/haswell/software/OpenMPI/4.1.5-GCC-12.3.0/lib64 (previously undefined) | |
| == 2024-06-25 14:11:54,960 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_SHARED to /project/boegelbot/Rocky8/haswell/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so | |
| == 2024-06-25 14:11:54,960 environment.py:93 INFO Environment variable MPI_LIB_SHARED set to /project/boegelbot/Rocky8/haswell/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previously undefined) | |
| == 2024-06-25 14:11:54,960 environment.py:93 INFO Environment variable EBVARMPI_LIB_SHARED set to /project/boegelbot/Rocky8/haswell/software/OpenMPI/4.1.5-GCC-12.3.0/lib64/libmpi.so (previously undefined) | |
| == 2024-06-25 14:11:54,960 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable MPI_LIB_STATIC to | |
| == 2024-06-25 14:11:54,960 environment.py:93 INFO Environment variable MPI_LIB_STATIC set to (previously undefined) | |
| == 2024-06-25 14:11:54,961 environment.py:93 INFO Environment variable EBVARMPI_LIB_STATIC set to (previously undefined) | |
| == 2024-06-25 14:11:54,961 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_CC to gcc | |
| == 2024-06-25 14:11:54,961 environment.py:93 INFO Environment variable OMPI_CC set to gcc (previously undefined) | |
| == 2024-06-25 14:11:54,961 environment.py:93 INFO Environment variable EBVAROMPI_CC set to gcc (previously undefined) | |
| == 2024-06-25 14:11:54,961 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_CXX to g++ | |
| == 2024-06-25 14:11:54,961 environment.py:93 INFO Environment variable OMPI_CXX set to g++ (previously undefined) | |
| == 2024-06-25 14:11:54,961 environment.py:93 INFO Environment variable EBVAROMPI_CXX set to g++ (previously undefined) | |
| == 2024-06-25 14:11:54,961 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_F77 to gfortran | |
| == 2024-06-25 14:11:54,961 environment.py:93 INFO Environment variable OMPI_F77 set to gfortran (previously undefined) | |
| == 2024-06-25 14:11:54,962 environment.py:93 INFO Environment variable EBVAROMPI_F77 set to gfortran (previously undefined) | |
| == 2024-06-25 14:11:54,962 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_F90 to gfortran | |
| == 2024-06-25 14:11:54,962 environment.py:93 INFO Environment variable OMPI_F90 set to gfortran (previously undefined) | |
| == 2024-06-25 14:11:54,962 environment.py:93 INFO Environment variable EBVAROMPI_F90 set to gfortran (previously undefined) | |
| == 2024-06-25 14:11:54,962 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OMPI_FC to gfortran | |
| == 2024-06-25 14:11:54,962 environment.py:93 INFO Environment variable OMPI_FC set to gfortran (previously undefined) | |
| == 2024-06-25 14:11:54,962 environment.py:93 INFO Environment variable EBVAROMPI_FC set to gfortran (previously undefined) | |
| == 2024-06-25 14:11:54,962 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable OPTFLAGS to -O2 -ftree-vectorize -march=native | |
| == 2024-06-25 14:11:54,962 environment.py:93 INFO Environment variable OPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2024-06-25 14:11:54,963 environment.py:93 INFO Environment variable EBVAROPTFLAGS set to -O2 -ftree-vectorize -march=native (previously undefined) | |
| == 2024-06-25 14:11:54,963 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable PRECFLAGS to -fno-math-errno | |
| == 2024-06-25 14:11:54,963 environment.py:93 INFO Environment variable PRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2024-06-25 14:11:54,963 environment.py:93 INFO Environment variable EBVARPRECFLAGS set to -fno-math-errno (previously undefined) | |
| == 2024-06-25 14:11:54,963 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_INC_DIR to | |
| == 2024-06-25 14:11:54,963 environment.py:93 INFO Environment variable SCALAPACK_INC_DIR set to (previously undefined) | |
| == 2024-06-25 14:11:54,963 environment.py:93 INFO Environment variable EBVARSCALAPACK_INC_DIR set to (previously undefined) | |
| == 2024-06-25 14:11:54,963 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_LIB_DIR to /project/boegelbot/Rocky8/haswell/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib | |
| == 2024-06-25 14:11:54,963 environment.py:93 INFO Environment variable SCALAPACK_LIB_DIR set to /project/boegelbot/Rocky8/haswell/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previously undefined) | |
| == 2024-06-25 14:11:54,964 environment.py:93 INFO Environment variable EBVARSCALAPACK_LIB_DIR set to /project/boegelbot/Rocky8/haswell/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib (previously undefined) | |
| == 2024-06-25 14:11:54,964 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_SHARED_LIBS to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so | |
| == 2024-06-25 14:11:54,964 environment.py:93 INFO Environment variable SCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-06-25 14:11:54,964 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so,libpthread.so (previously undefined) | |
| == 2024-06-25 14:11:54,964 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_MT_STATIC_LIBS to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a | |
| == 2024-06-25 14:11:54,964 environment.py:93 INFO Environment variable SCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-06-25 14:11:54,964 environment.py:93 INFO Environment variable EBVARSCALAPACK_MT_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a,libpthread.a (previously undefined) | |
| == 2024-06-25 14:11:54,964 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_SHARED_LIBS to libscalapack.so,libflexiblas.so,libgfortran.so | |
| == 2024-06-25 14:11:54,964 environment.py:93 INFO Environment variable SCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-06-25 14:11:54,965 environment.py:93 INFO Environment variable EBVARSCALAPACK_SHARED_LIBS set to libscalapack.so,libflexiblas.so,libgfortran.so (previously undefined) | |
| == 2024-06-25 14:11:54,965 toolchain.py:1127 DEBUG _setenv_variables: setting environment variable SCALAPACK_STATIC_LIBS to libscalapack.a,libflexiblas.a,libgfortran.a | |
| == 2024-06-25 14:11:54,965 environment.py:93 INFO Environment variable SCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-06-25 14:11:54,965 environment.py:93 INFO Environment variable EBVARSCALAPACK_STATIC_LIBS set to libscalapack.a,libflexiblas.a,libgfortran.a (previously undefined) | |
| == 2024-06-25 14:11:54,965 toolchain.py:442 DEBUG get_software_version software version 4.1.5 for OpenMPI was found in environment | |
| == 2024-06-25 14:11:54,965 easyblock.py:2139 INFO Using /tmp/boegelbot/GDAL/3.7.1/foss-2023a/gdal-3.7.1/ as start dir | |
| == 2024-06-25 14:11:54,966 easyblock.py:2142 DEBUG Changed to real build directory /tmp/boegelbot/GDAL/3.7.1/foss-2023a/gdal-3.7.1/ (start_dir) | |
| == 2024-06-25 14:11:54,966 build_log.py:267 INFO ... (took 2 mins 39 secs) | |
| == 2024-06-25 14:11:54,966 easyblock.py:3942 DEBUG Not skipping configure step (skippable: True, skip: None, skipsteps: [], module_only: False, force: False, sanity_check_only: False, skip_extensions: False, skip_test_step: False) | |
| == 2024-06-25 14:11:54,966 build_log.py:267 INFO configuring... | |
| == 2024-06-25 14:11:54,966 easyblock.py:3950 INFO Starting configure step | |
| == 2024-06-25 14:11:54,967 easyconfig.py:1702 INFO Generating template values... | |
| == 2024-06-25 14:11:54,967 templates.py:201 DEBUG config: GDAL EasyConfig @ /tmp/eb-sx9n5wkl/files_pr20901/g/GDAL/GDAL-3.7.1-foss-2023a.eb | |
| == 2024-06-25 14:11:54,967 templates.py:231 DEBUG version found in easyconfig is 3.7.1 | |
| == 2024-06-25 14:11:54,967 templates.py:333 DEBUG name: bitbucket_account, config: %(namelower)s | |
| == 2024-06-25 14:11:54,967 templates.py:333 DEBUG name: github_account, config: %(namelower)s | |
| == 2024-06-25 14:11:54,968 templates.py:333 DEBUG name: name, config: GDAL | |
| == 2024-06-25 14:11:54,968 templates.py:333 DEBUG name: parallel, config: 4 | |
| == 2024-06-25 14:11:54,968 templates.py:333 DEBUG name: version, config: 3.7.1 | |
| == 2024-06-25 14:11:54,968 templates.py:333 DEBUG name: versionsuffix, config: | |
| == 2024-06-25 14:11:54,968 templates.py:333 DEBUG name: versionprefix, config: | |
| == 2024-06-25 14:11:54,968 mpi.py:122 INFO Using template MPI command 'mpirun -n %(nr_ranks)s %(cmd)s' for MPI family 'OpenMPI' | |
| == 2024-06-25 14:11:54,968 mpi.py:307 INFO Using MPI command template 'mpirun -n %(nr_ranks)s %(cmd)s' (params: {'nr_ranks': 1, 'cmd': 'xxx_command_xxx'}) | |
| == 2024-06-25 14:11:54,968 easyconfig.py:1721 INFO Template values: arch='x86_64', bitbucket_account='gdal', builddir='/tmp/boegelbot/GDAL/3.7.1/foss-2023a', cuda_cc_cmake='70', cuda_cc_semicolon_sep='7.0', cuda_cc_space_sep='7.0', cuda_compute_capabilities='7.0', cuda_sm_comma_sep='sm_70', cuda_sm_space_sep='sm_70', github_account='gdal', installdir='/project/boegelbot/Rocky8/haswell/software/GDAL/3.7.1-foss-2023a', module_name='GDAL/3.7.1-foss-2023a', mpi_cmd_prefix='mpirun -n 1', name='GDAL', nameletter='G', nameletterlower='g', namelower='gdal', parallel='4', pymajver='3', pyminver='11', pyshortver='3.11', pyver='3.11.3', start_dir='/tmp/boegelbot/GDAL/3.7.1/foss-2023a/gdal-3.7.1/', sysroot='', toolchain_name='foss', toolchain_version='2023a', version='3.7.1', version_major='3', version_major_minor='3.7', version_minor='7', versionprefix='', versionsuffix='' | |
| == 2024-06-25 14:11:54,969 easyblock.py:3958 INFO Running method configure_step part of step configure | |
| == 2024-06-25 14:11:54,969 environment.py:93 INFO Environment variable CMAKE_INCLUDE_PATH set to /project/boegelbot/Rocky8/haswell/software/FlexiBLAS/3.3.1-GCC-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/FlexiBLAS/3.3.1-GCC-12.3.0/include/flexiblas:/project/boegelbot/Rocky8/haswell/software/FFTW.MPI/3.3.10-gompi-2023a/include:/project/boegelbot/Rocky8/haswell/software/pkgconf/1.9.5-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/Python/3.11.3-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/netCDF/4.9.2-gompi-2023a/include:/project/boegelbot/Rocky8/haswell/software/expat/2.5.0-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/GEOS/3.12.0-GCC-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/SQLite/3.42.0-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/libarchive/3.6.2-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/libxml2/2.11.4-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/libpng/1.6.39-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/LibTIFF/4.5.0-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/zlib/1.2.13-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/cURL/8.0.1-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/PCRE/8.45-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/PROJ/9.2.0-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/libgeotiff/1.7.1-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/HDF5/1.14.0-gompi-2023a/include:/project/boegelbot/Rocky8/haswell/software/HDF/4.2.16-2-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/Armadillo/12.6.2-foss-2023a/include:/project/boegelbot/Rocky8/haswell/software/CFITSIO/4.3.0-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/zstd/1.5.5-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/giflib/5.2.1-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/json-c/0.16-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/Xerces-C++/3.2.4-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/PCRE2/10.42-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/OpenEXR/3.1.7-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/Brunsli/0.1-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/Qhull/2020.2-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/LERC/4.0.0-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/OpenJPEG/2.5.0-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/Arrow/14.0.1-gfbf-2023a/include:/project/boegelbot/Rocky8/haswell/software/utf8proc/2.8.0-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/RE2/2023-08-01-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/Abseil/20230125.3-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/RapidJSON/1.1.0-20230928-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/snappy/1.1.10-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/Qhull/2020.2-GCCcore-12.3.0/qhull/include:/project/boegelbot/Rocky8/haswell/software/Highway/1.0.4-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/Brotli/1.0.9-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/Imath/3.1.7-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/arpack-ng/3.9.0-foss-2023a/include:/project/boegelbot/Rocky8/haswell/software/Boost/1.82.0-GCC-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/ICU/73.2-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/HDF/4.2.16-2-GCCcore-12.3.0/include/hdf:/project/boegelbot/Rocky8/haswell/software/libtirpc/1.3.3-GCCcore-12.3.0/include/tirpc:/project/boegelbot/Rocky8/haswell/software/libtirpc/1.3.3-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages/numpy/core/include:/project/boegelbot/Rocky8/haswell/software/pybind11/2.11.1-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/nlohmann_json/3.11.2-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/libdeflate/1.18-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/jbigkit/2.1-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/libxml2/2.11.4-GCCcore-12.3.0/include/libxml2:/project/boegelbot/Rocky8/haswell/software/lz4/1.9.4-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/Szip/2.1.1-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/libffi/3.4.4-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/Tcl/8.6.13-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/libreadline/8.2-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/bzip2/1.0.8-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/ncurses/6.4-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/FFTW/3.3.10-GCC-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/OpenBLAS/0.3.23-GCC-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/OpenMPI/4.1.5-GCC-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/UCC/1.2.0-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/PMIx/4.2.4-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/libfabric/1.18.0-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/UCX/1.14.1-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/libevent/2.1.12-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/OpenSSL/1.1/include:/project/boegelbot/Rocky8/haswell/software/hwloc/2.9.1-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/libpciaccess/0.17-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/XZ/5.4.2-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/numactl/2.0.16-GCCcore-12.3.0/include:/project/boegelbot/Rocky8/haswell/software/binutils/2.40-GCCcore-12.3.0/include (previously undefined) | |
| == 2024-06-25 14:11:54,969 environment.py:93 INFO Environment variable CMAKE_LIBRARY_PATH set to /project/boegelbot/Rocky8/haswell/software/GCCcore/12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/GCCcore/12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/FlexiBLAS/3.3.1-GCC-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib64:/project/boegelbot/Rocky8/haswell/software/ScaLAPACK/2.2.0-gompi-2023a-fb/lib:/project/boegelbot/Rocky8/haswell/software/FFTW.MPI/3.3.10-gompi-2023a/lib64:/project/boegelbot/Rocky8/haswell/software/FFTW.MPI/3.3.10-gompi-2023a/lib:/project/boegelbot/Rocky8/haswell/software/pkgconf/1.9.5-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/pkgconf/1.9.5-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/Bison/3.8.2-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/Bison/3.8.2-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/Python/3.11.3-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/Python/3.11.3-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/netCDF/4.9.2-gompi-2023a/lib64:/project/boegelbot/Rocky8/haswell/software/netCDF/4.9.2-gompi-2023a/lib:/project/boegelbot/Rocky8/haswell/software/expat/2.5.0-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/expat/2.5.0-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/GEOS/3.12.0-GCC-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/GEOS/3.12.0-GCC-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/SQLite/3.42.0-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/SQLite/3.42.0-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/libarchive/3.6.2-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/libarchive/3.6.2-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/libxml2/2.11.4-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/libxml2/2.11.4-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/libpng/1.6.39-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/libpng/1.6.39-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/LibTIFF/4.5.0-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/LibTIFF/4.5.0-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/zlib/1.2.13-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/zlib/1.2.13-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/cURL/8.0.1-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/cURL/8.0.1-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/PCRE/8.45-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/PCRE/8.45-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/PROJ/9.2.0-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/PROJ/9.2.0-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/libgeotiff/1.7.1-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/libgeotiff/1.7.1-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/SciPy-bundle/2023.07-gfbf-2023a/lib64:/project/boegelbot/Rocky8/haswell/software/SciPy-bundle/2023.07-gfbf-2023a/lib:/project/boegelbot/Rocky8/haswell/software/HDF5/1.14.0-gompi-2023a/lib64:/project/boegelbot/Rocky8/haswell/software/HDF5/1.14.0-gompi-2023a/lib:/project/boegelbot/Rocky8/haswell/software/HDF/4.2.16-2-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/HDF/4.2.16-2-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/Armadillo/12.6.2-foss-2023a/lib64:/project/boegelbot/Rocky8/haswell/software/Armadillo/12.6.2-foss-2023a/lib:/project/boegelbot/Rocky8/haswell/software/CFITSIO/4.3.0-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/CFITSIO/4.3.0-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/zstd/1.5.5-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/zstd/1.5.5-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/giflib/5.2.1-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/giflib/5.2.1-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/json-c/0.16-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/json-c/0.16-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/Xerces-C++/3.2.4-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/Xerces-C++/3.2.4-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/PCRE2/10.42-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/PCRE2/10.42-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/OpenEXR/3.1.7-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/OpenEXR/3.1.7-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/Brunsli/0.1-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/Brunsli/0.1-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/Qhull/2020.2-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/Qhull/2020.2-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/LERC/4.0.0-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/LERC/4.0.0-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/OpenJPEG/2.5.0-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/OpenJPEG/2.5.0-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/Arrow/14.0.1-gfbf-2023a/lib64:/project/boegelbot/Rocky8/haswell/software/Arrow/14.0.1-gfbf-2023a/lib:/project/boegelbot/Rocky8/haswell/software/utf8proc/2.8.0-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/RE2/2023-08-01-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/Abseil/20230125.3-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/snappy/1.1.10-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/Highway/1.0.4-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/Brotli/1.0.9-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/Imath/3.1.7-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/arpack-ng/3.9.0-foss-2023a/lib:/project/boegelbot/Rocky8/haswell/software/Boost/1.82.0-GCC-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/ICU/73.2-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/libtirpc/1.3.3-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/SciPy-bundle/2023.07-gfbf-2023a/lib/python3.11/site-packages/numpy/core/lib:/project/boegelbot/Rocky8/haswell/software/libdeflate/1.18-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/jbigkit/2.1-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/lz4/1.9.4-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/Szip/2.1.1-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/libffi/3.4.4-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/Tcl/8.6.13-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/libreadline/8.2-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/bzip2/1.0.8-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/ncurses/6.4-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/FFTW/3.3.10-GCC-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/OpenBLAS/0.3.23-GCC-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/OpenMPI/4.1.5-GCC-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/UCC/1.2.0-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/PMIx/4.2.4-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/libfabric/1.18.0-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/UCX/1.14.1-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/libevent/2.1.12-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/OpenSSL/1.1/lib:/project/boegelbot/Rocky8/haswell/software/hwloc/2.9.1-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/libpciaccess/0.17-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/XZ/5.4.2-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/numactl/2.0.16-GCCcore-12.3.0/lib:/project/boegelbot/Rocky8/haswell/software/binutils/2.40-GCCcore-12.3.0/lib:/opt/software/slurm/lib64 (previous value: '/project/boegelbot/Rocky8/haswell/software/libffi/3.4.4-GCCcore-12.3.0/lib64:/project/boegelbot/Rocky8/haswell/software/GCCcore/12.3.0/lib64') | |
| == 2024-06-25 14:11:54,970 filetools.py:1931 DEBUG Not creating existing path /tmp/boegelbot/GDAL/3.7.1/foss-2023a/easybuild_obj | |
| == 2024-06-25 14:11:54,970 environment.py:93 INFO Environment variable FC set to mpifort (previous value: 'mpifort') | |
| == 2024-06-25 14:11:54,970 cmakemake.py:141 DEBUG Determined CMake version: 3.26.3 | |
| == 2024-06-25 14:11:54,974 run.py:221 DEBUG run_cmd: running cmd cmake -DCMAKE_INSTALL_PREFIX=/project/boegelbot/Rocky8/haswell/software/GDAL/3.7.1-foss-2023a -DCMAKE_BUILD_TYPE=Release -DCMAKE_POLICY_DEFAULT_CMP0094=NEW -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DBOOST_ROOT=/project/boegelbot/Rocky8/haswell/software/Boost/1.82.0-GCC-12.3.0 -DBoost_NO_SYSTEM_PATHS=ON -DGDAL_USE_INTERNAL_LIBS=OFF -DArrow_DIR=$EBROOTARROW -DGEOTIFF_INCLUDE_DIR=$EBROOTLIBGEOTIFF/include -DPython_ROOT=$EBROOTPYTHON -DBUILD_SHARED_LIBS=OFF /tmp/boegelbot/GDAL/3.7.1/foss-2023a/gdal-3.7.1/ (in /tmp/boegelbot/GDAL/3.7.1/foss-2023a/easybuild_obj) | |
| == 2024-06-25 14:11:54,974 run.py:247 INFO running cmd: cmake -DCMAKE_INSTALL_PREFIX=/project/boegelbot/Rocky8/haswell/software/GDAL/3.7.1-foss-2023a -DCMAKE_BUILD_TYPE=Release -DCMAKE_POLICY_DEFAULT_CMP0094=NEW -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DBOOST_ROOT=/project/boegelbot/Rocky8/haswell/software/Boost/1.82.0-GCC-12.3.0 -DBoost_NO_SYSTEM_PATHS=ON -DGDAL_USE_INTERNAL_LIBS=OFF -DArrow_DIR=$EBROOTARROW -DGEOTIFF_INCLUDE_DIR=$EBROOTLIBGEOTIFF/include -DPython_ROOT=$EBROOTPYTHON -DBUILD_SHARED_LIBS=OFF /tmp/boegelbot/GDAL/3.7.1/foss-2023a/gdal-3.7.1/ | |
| == 2024-06-25 14:13:02,339 build_log.py:171 ERROR EasyBuild crashed with an error (at easybuild/easybuild-framework/easybuild/base/exceptions.py:126 in __init__): cmd " cmake -DCMAKE_INSTALL_PREFIX=/project/boegelbot/Rocky8/haswell/software/GDAL/3.7.1-foss-2023a -DCMAKE_BUILD_TYPE=Release -DCMAKE_POLICY_DEFAULT_CMP0094=NEW -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DBOOST_ROOT=/project/boegelbot/Rocky8/haswell/software/Boost/1.82.0-GCC-12.3.0 -DBoost_NO_SYSTEM_PATHS=ON -DGDAL_USE_INTERNAL_LIBS=OFF -DArrow_DIR=$EBROOTARROW -DGEOTIFF_INCLUDE_DIR=$EBROOTLIBGEOTIFF/include -DPython_ROOT=$EBROOTPYTHON -DBUILD_SHARED_LIBS=OFF /tmp/boegelbot/GDAL/3.7.1/foss-2023a/gdal-3.7.1/" exited with exit code 1 and output: | |
| -- The C compiler identification is GNU 12.3.0 | |
| -- The CXX compiler identification is GNU 12.3.0 | |
| -- Detecting C compiler ABI info | |
| -- Detecting C compiler ABI info - done | |
| -- Check for working C compiler: /project/boegelbot/Rocky8/haswell/software/OpenMPI/4.1.5-GCC-12.3.0/bin/mpicc - skipped | |
| -- Detecting C compile features | |
| -- Detecting C compile features - done | |
| -- Detecting CXX compiler ABI info | |
| -- Detecting CXX compiler ABI info - done | |
| -- Check for working CXX compiler: /project/boegelbot/Rocky8/haswell/software/OpenMPI/4.1.5-GCC-12.3.0/bin/mpicxx - skipped | |
| -- Detecting CXX compile features | |
| -- Detecting CXX compile features - done | |
| -- Performing Test test_sse | |
| -- Performing Test test_sse - Success | |
| -- Looking for C++ include xmmintrin.h | |
| -- Looking for C++ include xmmintrin.h - found | |
| -- Performing Test test_sse2 | |
| -- Performing Test test_sse2 - Success | |
| -- Looking for C++ include emmintrin.h | |
| -- Looking for C++ include emmintrin.h - found | |
| -- Performing Test test_ssse3 | |
| -- Performing Test test_ssse3 - Success | |
| -- Looking for C++ include tmmintrin.h | |
| -- Looking for C++ include tmmintrin.h - found | |
| -- Performing Test test_sse4.1 | |
| -- Performing Test test_sse4.1 - Success | |
| -- Looking for C++ include smmintrin.h | |
| -- Looking for C++ include smmintrin.h - found | |
| -- Performing Test test_avx | |
| -- Performing Test test_avx - Success | |
| -- Looking for C++ include immintrin.h | |
| -- Looking for C++ include immintrin.h - found | |
| -- Performing Test test_avx2 | |
| -- Performing Test test_avx2 - Success | |
| -- Found SWIG: /project/boegelbot/Rocky8/haswell/software/SWIG/4.1.1-GCCcore-12.3.0/bin/swig (found version "4.1.1") | |
| -- Found Python: /project/boegelbot/Rocky8/haswell/software/Python/3.11.3-GCCcore-12.3.0/bin/python3.11 (found suitable version "3.11.3", minimum required is "3.6") found components: Interpreter Development NumPy Development.Module Development.Embed | |
| -- Performing Test HAVE_WFLAG_ALL | |
| -- Performing Test HAVE_WFLAG_ALL - Success | |
| -- Performing Test HAVE_WFLAG_EXTRA | |
| -- Performing Test HAVE_WFLAG_EXTRA - Success | |
| -- Performing Test HAVE_WFLAG_INIT_SELF | |
| -- Performing Test HAVE_WFLAG_INIT_SELF - Success | |
| -- Performing Test HAVE_WFLAG_UNUSED_PARAMETER | |
| -- Performing Test HAVE_WFLAG_UNUSED_PARAMETER - Success | |
| -- Performing Test HAVE_WFLAG_MISSING_PROTOTYPES | |
| -- Performing Test HAVE_WFLAG_MISSING_PROTOTYPES - Success | |
| -- Performing Test HAVE_WFLAG_MISSING_DECLARATIONS | |
| -- Performing Test HAVE_WFLAG_MISSING_DECLARATIONS - Success | |
| -- Performing Test HAVE_WFLAG_SHORTEN_64_TO_32 | |
| -- Performing Test HAVE_WFLAG_SHORTEN_64_TO_32 - Failed | |
| -- Performing Test HAVE_WFLAG_LOGICAL_OP | |
| -- Performing Test HAVE_WFLAG_LOGICAL_OP - Success | |
| -- Performing Test HAVE_WFLAG_SHADOW | |
| -- Performing Test HAVE_WFLAG_SHADOW - Success | |
| -- Performing Test HAVE_WFLAG_SHADOW_FIELD | |
| -- Performing Test HAVE_WFLAG_SHADOW_FIELD - Failed | |
| -- Performing Test HAVE_WFLAG_MISSING_INCLUDE_DIRS | |
| -- Performing Test HAVE_WFLAG_MISSING_INCLUDE_DIRS - Success | |
| -- Performing Test HAVE_WFLAG_FORMAT_SECURITY | |
| -- Performing Test HAVE_WFLAG_FORMAT_SECURITY - Success | |
| -- Performing Test HAVE_WFLAG_ERROR_VLA | |
| -- Performing Test HAVE_WFLAG_ERROR_VLA - Success | |
| -- Performing Test HAVE_WFLAG_NO_CLOBBERED | |
| -- Performing Test HAVE_WFLAG_NO_CLOBBERED - Success | |
| -- Performing Test HAVE_WFLAG_DATE_TIME | |
| -- Performing Test HAVE_WFLAG_DATE_TIME - Success | |
| -- Performing Test HAVE_WFLAG_NULL_DEREFERENCE | |
| -- Performing Test HAVE_WFLAG_NULL_DEREFERENCE - Success | |
| -- Performing Test HAVE_WFLAG_DUPLICATE_COND | |
| -- Performing Test HAVE_WFLAG_DUPLICATE_COND - Failed | |
| -- Performing Test HAVE_WFLAG_EXTRA_SEMI | |
| -- Performing Test HAVE_WFLAG_EXTRA_SEMI - Success | |
| -- Performing Test HAVE_WFLAG_COMMA | |
| -- Performing Test HAVE_WFLAG_COMMA - Failed | |
| -- Performing Test HAVE_WFLAG_FLOAT_CONVERSION | |
| -- Performing Test HAVE_WFLAG_FLOAT_CONVERSION - Success | |
| -- Performing Test HAVE_WFLAG_DOCUMENTATION_AND_NO_DEPRECATED | |
| -- Performing Test HAVE_WFLAG_DOCUMENTATION_AND_NO_DEPRECATED - Failed | |
| -- Performing Test HAVE_WFLAG_UNUSED_PRIVATE_FIELD | |
| -- Performing Test HAVE_WFLAG_UNUSED_PRIVATE_FIELD - Failed | |
| -- Performing Test HAVE_WFLAG_NON_VIRTUAL_DTOR | |
| -- Performing Test HAVE_WFLAG_NON_VIRTUAL_DTOR - Success | |
| -- Performing Test HAVE_WFLAG_OVERLOADED_VIRTUAL | |
| -- Performing Test HAVE_WFLAG_OVERLOADED_VIRTUAL - Success | |
| -- Performing Test HAVE_WFLAG_SUGGEST_OVERRIDE | |
| -- Performing Test HAVE_WFLAG_SUGGEST_OVERRIDE - Success | |
| -- Performing Test HAVE_FLAG_NO_OPERATOR_NAMES | |
| -- Performing Test HAVE_FLAG_NO_OPERATOR_NAMES - Success | |
| -- Performing Test HAVE_GCC_WARNING_ZERO_AS_NULL_POINTER_CONSTANT | |
| -- Performing Test HAVE_GCC_WARNING_ZERO_AS_NULL_POINTER_CONSTANT - Success | |
| -- Performing Test HAVE_WFLAG_OLD_STYLE_CAST | |
| -- Performing Test HAVE_WFLAG_OLD_STYLE_CAST - Success | |
| -- Performing Test HAVE_WFLAG_EFFCXX | |
| -- Performing Test HAVE_WFLAG_EFFCXX - Success | |
| -- Looking for vsnprintf | |
| -- Looking for vsnprintf - found | |
| -- Looking for getcwd | |
| -- Looking for getcwd - found | |
| -- Looking for fcntl.h | |
| -- Looking for fcntl.h - found | |
| -- Looking for unistd.h | |
| -- Looking for unistd.h - found | |
| -- Looking for sys/types.h | |
| -- Looking for sys/types.h - found | |
| -- Looking for locale.h | |
| -- Looking for locale.h - found | |
| -- Looking for xlocale.h | |
| -- Looking for xlocale.h - not found | |
| -- Looking for direct.h | |
| -- Looking for direct.h - not found | |
| -- Looking for dlfcn.h | |
| -- Looking for dlfcn.h - found | |
| -- Looking for stdint.h | |
| -- Looking for stdint.h - found | |
| -- Looking for stddef.h | |
| -- Looking for stddef.h - found | |
| -- Check size of int | |
| -- Check size of int - done | |
| -- Check size of unsigned long | |
| -- Check size of unsigned long - done | |
| -- Check size of long int | |
| -- Check size of long int - done | |
| -- Check size of void* | |
| -- Check size of void* - done | |
| -- Check size of size_t | |
| -- Check size of size_t - done | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD | |
| -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Failed | |
| -- Looking for pthread_create in pthreads | |
| -- Looking for pthread_create in pthreads - not found | |
| -- Looking for pthread_create in pthread | |
| -- Looking for pthread_create in pthread - found | |
| -- Found Threads: TRUE | |
| -- Performing Test HAVE_PTHREAD_MUTEX_RECURSIVE | |
| -- Performing Test HAVE_PTHREAD_MUTEX_RECURSIVE - Success | |
| -- Performing Test HAVE_PTHREAD_MUTEX_ADAPTIVE_NP | |
| -- Performing Test HAVE_PTHREAD_MUTEX_ADAPTIVE_NP - Success | |
| -- Performing Test HAVE_PTHREAD_SPIN_LOCK | |
| -- Performing Test HAVE_PTHREAD_SPIN_LOCK - Failed | |
| -- Performing Test HAVE_5ARGS_MREMAP | |
| -- Performing Test HAVE_5ARGS_MREMAP - Success | |
| -- Performing Test HAVE_PTHREAD_ATFORK | |
| -- Performing Test HAVE_PTHREAD_ATFORK - Success | |
| -- Looking for sys/stat.h | |
| -- Looking for sys/stat.h - found | |
| -- Looking for readlink | |
| -- Looking for readlink - found | |
| -- Looking for posix_spawnp | |
| -- Looking for posix_spawnp - found | |
| -- Looking for posix_memalign | |
| -- Looking for posix_memalign - found | |
| -- Looking for vfork | |
| -- Looking for vfork - found | |
| -- Looking for mmap | |
| -- Looking for mmap - found | |
| -- Looking for sigaction | |
| -- Looking for sigaction - found | |
| -- Looking for statvfs | |
| -- Looking for statvfs - found | |
| -- Looking for statvfs64 | |
| -- Looking for statvfs64 - found | |
| -- Looking for lstat | |
| -- Looking for lstat - found | |
| -- Looking for getrlimit | |
| -- Looking for getrlimit - found | |
| -- Looking for RLIMIT_AS | |
| -- Looking for RLIMIT_AS - found | |
| -- Looking for ftell64 | |
| -- Looking for ftell64 - not found | |
| -- Looking for ftello64 | |
| -- Looking for ftello64 - found | |
| -- Looking for fseek64 | |
| -- Looking for fseek64 - not found | |
| -- Looking for fseeko64 | |
| -- Looking for fseeko64 - found | |
| -- Looking for stat64 | |
| -- Looking for stat64 - found | |
| -- Performing Test NO_UNIX_STDIO_64 | |
| -- Performing Test NO_UNIX_STDIO_64 - Failed | |
| -- Looking for fopen64 | |
| -- Looking for fopen64 - found | |
| -- Check size of off_t | |
| -- Check size of off_t - done | |
| -- Looking for pread64 | |
| -- Looking for pread64 - found | |
| -- Looking for ftruncate64 | |
| -- Looking for ftruncate64 - found | |
| -- Performing Test HAVE_USELOCALE | |
| -- Performing Test HAVE_USELOCALE - Success | |
| -- Performing Test HAVE_HIDE_INTERNAL_SYMBOLS | |
| -- Performing Test HAVE_HIDE_INTERNAL_SYMBOLS - Success | |
| -- Performing Test HAVE_GCC_ATOMIC_BUILTINS | |
| -- Performing Test HAVE_GCC_ATOMIC_BUILTINS - Success | |
| -- Performing Test HAVE_GCC_BSWAP | |
| -- Performing Test HAVE_GCC_BSWAP - Success | |
| -- Performing Test HAVE_SC_PHYS_PAGES | |
| -- Performing Test HAVE_SC_PHYS_PAGES - Success | |
| -- Performing Test HAVE_SCHED_GETAFFINITY | |
| -- Performing Test HAVE_SCHED_GETAFFINITY - Success | |
| -- Performing Test INT128_TEST | |
| -- Performing Test INT128_TEST - Success | |
| -- checking if sprintf can be overloaded for GDAL compilation | |
| -- Performing Test DEPRECATE_SPRINTF | |
| -- Performing Test DEPRECATE_SPRINTF - Failed | |
| -- Looking for linux/userfaultfd.h | |
| -- Looking for linux/userfaultfd.h - found | |
| -- GDAL_VERSION = 3.7.1 | |
| -- GDAL_ABI_FULL_VERSION = 33.3.7.1 | |
| -- GDAL_SOVERSION = 33 | |
| -- Could NOT find ODBC (missing: ODBC_LIBRARY ODBC_INCLUDE_DIR ODBCINST) | |
| -- Could NOT find ODBCCPP (missing: ODBCCPP_LIBRARY ODBCCPP_INCLUDE_DIR) | |
| -- Could NOT find MSSQL_ODBC (missing: MSSQL_ODBC_LIBRARY MSSQL_ODBC_INCLUDE_DIR MSSQL_ODBC_VERSION) | |
| -- Could NOT find MySQL (missing: MYSQL_LIBRARY MYSQL_INCLUDE_DIR) | |
| -- Found CURL: /project/boegelbot/Rocky8/haswell/software/cURL/8.0.1-GCCcore-12.3.0/lib/libcurl.so (found version "8.0.1") | |
| -- Performing Test Iconv_IS_BUILT_IN | |
| -- Performing Test Iconv_IS_BUILT_IN - Success | |
| -- Found Iconv: /usr/lib64/libc.so | |
| -- Performing Test _ICONV_SECOND_ARGUMENT_IS_NOT_CONST | |
| -- Performing Test _ICONV_SECOND_ARGUMENT_IS_NOT_CONST - Success | |
| -- Performing Test ICONV_HAS_EXTRA_CHARSETS | |
| -- Performing Test ICONV_HAS_EXTRA_CHARSETS - Success | |
| -- Found LibXml2: /project/boegelbot/Rocky8/haswell/software/libxml2/2.11.4-GCCcore-12.3.0/lib/libxml2.so (found version "2.11.4") | |
| -- Found XercesC: /project/boegelbot/Rocky8/haswell/software/Xerces-C++/3.2.4-GCCcore-12.3.0/lib/libxerces-c.so (found version "3.2.4") | |
| -- Found ZLIB: /project/boegelbot/Rocky8/haswell/software/zlib/1.2.13-GCCcore-12.3.0/lib/libz.so (found version "1.2.13") | |
| -- Found Deflate: /project/boegelbot/Rocky8/haswell/software/libdeflate/1.18-GCCcore-12.3.0/lib/libdeflate.so | |
| -- Found OpenSSL: /project/boegelbot/Rocky8/haswell/software/OpenSSL/1.1/lib/libcrypto.so (found version "1.1.1k") found components: SSL Crypto | |
| -- Could NOT find CryptoPP (missing: CRYPTOPP_LIBRARY CRYPTOPP_TEST_KNOWNBUG CRYPTOPP_INCLUDE_DIR) | |
| -- Could NOT find ZSTD (missing: ZSTD_DIR) | |
| -- Found PkgConfig: /project/boegelbot/Rocky8/haswell/software/pkgconf/1.9.5-GCCcore-12.3.0/bin/pkg-config (found version "1.9.5") | |
| -- Found ZSTD: /project/boegelbot/Rocky8/haswell/software/zstd/1.5.5-GCCcore-12.3.0/lib/libzstd.so (found version "1.5.5") | |
| -- Could NOT find SFCGAL (missing: SFCGAL_LIBRARY SFCGAL_INCLUDE_DIR) | |
| -- Could NOT find GeoTIFF (missing: GeoTIFF_DIR) | |
| -- Found GeoTIFF: /project/boegelbot/Rocky8/haswell/software/libgeotiff/1.7.1-GCCcore-12.3.0/lib/libgeotiff.so (found version "1.7.1.0") | |
| -- Found PNG: /project/boegelbot/Rocky8/haswell/software/libpng/1.6.39-GCCcore-12.3.0/lib/libpng.so (found version "1.6.39") | |
| -- Found JPEG: /project/boegelbot/Rocky8/haswell/software/libjpeg-turbo/2.1.5.1-GCCcore-12.3.0/lib/libjpeg.so (found version "80") | |
| -- Performing Test HAVE_JPEGTURBO_DUAL_MODE_8_12 | |
| -- Performing Test HAVE_JPEGTURBO_DUAL_MODE_8_12 - Failed | |
| -- Found GIF: /project/boegelbot/Rocky8/haswell/software/giflib/5.2.1-GCCcore-12.3.0/lib/libgif.so (found version "5.2.1") | |
| -- Could NOT find OpenCAD (missing: OPENCAD_LIBRARY OPENCAD_INCLUDE_DIR) | |
| -- Found QHULL: /project/boegelbot/Rocky8/haswell/software/Qhull/2020.2-GCCcore-12.3.0/lib/libqhull_r.so | |
| -- Found LERC: /project/boegelbot/Rocky8/haswell/software/LERC/4.0.0-GCCcore-12.3.0/lib/libLerc.so | |
| -- Found BRUNSLI: /project/boegelbot/Rocky8/haswell/software/Brunsli/0.1-GCCcore-12.3.0/lib/libbrunslienc-c.so | |
| -- Could NOT find libQB3 (missing: libQB3_DIR) | |
| -- Could NOT find Shapelib (missing: Shapelib_INCLUDE_DIR Shapelib_LIBRARY) | |
| -- Found PCRE2: /project/boegelbot/Rocky8/haswell/software/PCRE2/10.42-GCCcore-12.3.0/lib/libpcre2-8.so | |
| -- Looking for sqlite3_mutex_alloc | |
| -- Looking for sqlite3_mutex_alloc - found | |
| -- Looking for sqlite3_column_table_name | |
| -- Looking for sqlite3_column_table_name - found | |
| -- Looking for sqlite3_rtree_query_callback | |
| -- Looking for sqlite3_rtree_query_callback - found | |
| -- Looking for sqlite3_load_extension | |
| -- Looking for sqlite3_load_extension - found | |
| -- Looking for sqlite3_progress_handler | |
| -- Looking for sqlite3_progress_handler - found | |
| -- Performing Test SQLite3_HAS_NON_DEPRECATED_AUTO_EXTENSION | |
| -- Performing Test SQLite3_HAS_NON_DEPRECATED_AUTO_EXTENSION - Success | |
| -- Found SQLite3: /project/boegelbot/Rocky8/haswell/software/SQLite/3.42.0-GCCcore-12.3.0/lib/libsqlite3.so (found version "3.42.0") | |
| -- Could NOT find SPATIALITE (missing: SPATIALITE_LIBRARY SPATIALITE_INCLUDE_DIR) (Required is at least version "4.1.2") | |
| -- Could NOT find RASTERLITE2 (missing: RASTERLITE2_LIBRARY RASTERLITE2_INCLUDE_DIR) (Required is at least version "1.1.0") | |
| -- Could NOT find LibKML (missing: LIBKML_BASE_LIBRARY LIBKML_INCLUDE_DIR LIBKML_DOM_LIBRARY LIBKML_ENGINE_LIBRARY) | |
| -- Found HDF5: /project/boegelbot/Rocky8/haswell/software/HDF5/1.14.0-gompi-2023a/lib/libhdf5.so;/usr/lib64/libpthread.so;/project/boegelbot/Rocky8/haswell/software/Szip/2.1.1-GCCcore-12.3.0/lib/libsz.so;/project/boegelbot/Rocky8/haswell/software/zlib/1.2.13-GCCcore-12.3.0/lib/libz.so;/usr/lib64/libdl.so;/usr/lib64/libm.so;/usr/lib64/libm.so;/usr/lib64/libpthread.so (found version "1.14.0") found components: C | |
| -- Could NOT find WebP (missing: WEBP_LIBRARY WEBP_INCLUDE_DIR) | |
| -- Could NOT find FreeXL (missing: FREEXL_LIBRARY FREEXL_INCLUDE_DIR) | |
| -- Could NOT find MRSID (missing: MRSID_LIBRARY MRSID_INCLUDE_DIR) | |
| -- Found Armadillo: /project/boegelbot/Rocky8/haswell/software/Armadillo/12.6.2-foss-2023a/include (found version "12.6.2") | |
| -- Performing Test ARMADILLO_TEST_PROGRAM_WITHOUT_LAPACK_COMPILES | |
| -- Performing Test ARMADILLO_TEST_PROGRAM_WITHOUT_LAPACK_COMPILES - Success | |
| -- Found HDF4: /project/boegelbot/Rocky8/haswell/software/HDF/4.2.16-2-GCCcore-12.3.0/lib/libdf.so (found version "4.2.16") | |
| -- Could NOT find ECW (missing: ECW_LIBRARY ECWnet_LIBRARY ECWC_LIBRARY NCSUtil_LIBRARY ECW_INCLUDE_DIR) | |
| -- Could NOT find OGDI (missing: OGDI_LIBRARY OGDI_INCLUDE_DIRS) | |
| -- Looking for CL_VERSION_3_0 | |
| -- Looking for CL_VERSION_3_0 - not found | |
| -- Looking for CL_VERSION_2_2 | |
| -- Looking for CL_VERSION_2_2 - not found | |
| -- Looking for CL_VERSION_2_1 | |
| -- Looking for CL_VERSION_2_1 - not found | |
| -- Looking for CL_VERSION_2_0 | |
| -- Looking for CL_VERSION_2_0 - not found | |
| -- Looking for CL_VERSION_1_2 | |
| -- Looking for CL_VERSION_1_2 - not found | |
| -- Looking for CL_VERSION_1_1 | |
| -- Looking for CL_VERSION_1_1 - not found | |
| -- Looking for CL_VERSION_1_0 | |
| -- Looking for CL_VERSION_1_0 - not found | |
| -- Could NOT find OpenCL (missing: OpenCL_LIBRARY OpenCL_INCLUDE_DIR) | |
| -- Could NOT find PostgreSQL (missing: PostgreSQL_LIBRARY PostgreSQL_INCLUDE_DIR) | |
| -- Could NOT find FYBA (missing: FYBA_FYBA_LIBRARY FYBA_FYGM_LIBRARY FYBA_FYUT_LIBRARY FYBA_INCLUDE_DIR) | |
| -- Found LibLZMA: /project/boegelbot/Rocky8/haswell/software/XZ/5.4.2-GCCcore-12.3.0/lib/liblzma.so (found version "5.4.2") | |
| -- Found LZ4: /project/boegelbot/Rocky8/haswell/software/lz4/1.9.4-GCCcore-12.3.0/lib/liblz4.so | |
| -- Could NOT find Blosc (missing: BLOSC_LIBRARY BLOSC_INCLUDE_DIR) | |
| -- Could NOT find basisu (missing: basisu_DIR) | |
| -- Could NOT find IDB (missing: IDB_INCLUDE_DIR IDB_IFCPP_LIBRARY IDB_IFDMI_LIBRARY IDB_IFSQL_LIBRARY IDB_IFCLI_LIBRARY) | |
| -- Could NOT find rdb (missing: rdb_DIR) | |
| -- Could NOT find TileDB (missing: TileDB_DIR) | |
| -- Found OpenEXR: /project/boegelbot/Rocky8/haswell/software/OpenEXR/3.1.7-GCCcore-12.3.0/lib/libOpenEXR.so (found version "3.1.7") | |
| -- Could NOT find MONGOCXX (missing: MONGOCXX_INCLUDE_DIR BSONCXX_INCLUDE_DIR MONGOCXX_LIBRARY BSONCXX_LIBRARY) | |
| -- Found OpenJPEG: /project/boegelbot/Rocky8/haswell/software/OpenJPEG/2.5.0-GCCcore-12.3.0/lib/libopenjp2.so (found version "2.5.0") | |
| -- Could NOT find JNI (missing: JAVA_INCLUDE_PATH JAVA_INCLUDE_PATH2 AWT JVM) | |
| -- Could NOT find HDFS (missing: HDFS_LIBRARY HDFS_INCLUDE_DIR) | |
| -- Could NOT find Poppler (missing: Poppler_LIBRARY Poppler_INCLUDE_DIR) | |
| -- Could NOT find Podofo (missing: PODOFO_LIBRARY PODOFO_INCLUDE_DIR) | |
| -- Could NOT find Oracle (missing: Oracle_LIBRARY Oracle_INCLUDE_DIR) | |
| -- Could NOT find FileGDB (missing: FileGDB_LIBRARY FileGDB_INCLUDE_DIR) | |
| -- Could NOT find KDU (missing: KDU_INCLUDE_DIR KDU_LIBRARY KDU_AUX_LIBRARY) (found version "") | |
| -- Could NOT find LURATECH (missing: LURATECH_LIBRARY LURATECH_INCLUDE_DIR) | |
| -- Check if compiler accepts -pthread | |
| -- Check if compiler accepts -pthread - yes | |
| CMake Warning at /project/boegelbot/Rocky8/haswell/software/Arrow/14.0.1-gfbf-2023a/lib64/cmake/Arrow/Findlz4Alt.cmake:29 (find_package): | |
| By not providing "Findlz4.cmake" in CMAKE_MODULE_PATH this project has | |
| asked CMake to find a package configuration file provided by "lz4", but | |
| CMake did not find one. | |
| Could not find a package configuration file provided by "lz4" with any of | |
| the following names: | |
| lz4Config.cmake | |
| lz4-config.cmake | |
| Add the installation prefix of "lz4" to CMAKE_PREFIX_PATH or set "lz4_DIR" | |
| to a directory containing one of the above files. If "lz4" provides a | |
| separate development package or SDK, be sure it has been installed. | |
| Call Stack (most recent call first): | |
| /project/boegelbot/Rocky8/haswell/software/CMake/3.26.3-GCCcore-12.3.0/share/cmake-3.26/Modules/CMakeFindDependencyMacro.cmake:76 (find_package) | |
| /project/boegelbot/Rocky8/haswell/software/Arrow/14.0.1-gfbf-2023a/lib64/cmake/Arrow/ArrowConfig.cmake:99 (find_dependency) | |
| /project/boegelbot/Rocky8/haswell/software/Arrow/14.0.1-gfbf-2023a/lib64/cmake/Arrow/ArrowConfig.cmake:122 (arrow_find_dependencies) | |
| cmake/helpers/CheckDependentLibraries.cmake:145 (find_package) | |
| cmake/helpers/CheckDependentLibraries.cmake:770 (gdal_check_package) | |
| gdal.cmake:265 (include) | |
| CMakeLists.txt:246 (include) | |
| -- Checking for module 'liblz4' | |
| -- Found liblz4, version 1.9.4 | |
| -- Found lz4Alt: /project/boegelbot/Rocky8/haswell/software/lz4/1.9.4-GCCcore-12.3.0/lib/liblz4.so | |
| CMake Warning at /project/boegelbot/Rocky8/haswell/software/Arrow/14.0.1-gfbf-2023a/lib64/cmake/Arrow/FindzstdAlt.cmake:29 (find_package): | |
| By not providing "Findzstd.cmake" in CMAKE_MODULE_PATH this project has | |
| asked CMake to find a package configuration file provided by "zstd", but | |
| CMake did not find one. | |
| Could not find a package configuration file provided by "zstd" with any of | |
| the following names: | |
| zstdConfig.cmake | |
| zstd-config.cmake | |
| Add the installation prefix of "zstd" to CMAKE_PREFIX_PATH or set | |
| "zstd_DIR" to a directory containing one of the above files. If "zstd" | |
| provides a separate development package or SDK, be sure it has been | |
| installed. | |
| Call Stack (most recent call first): | |
| /project/boegelbot/Rocky8/haswell/software/CMake/3.26.3-GCCcore-12.3.0/share/cmake-3.26/Modules/CMakeFindDependencyMacro.cmake:76 (find_package) | |
| /project/boegelbot/Rocky8/haswell/software/Arrow/14.0.1-gfbf-2023a/lib64/cmake/Arrow/ArrowConfig.cmake:99 (find_dependency) | |
| /project/boegelbot/Rocky8/haswell/software/Arrow/14.0.1-gfbf-2023a/lib64/cmake/Arrow/ArrowConfig.cmake:122 (arrow_find_dependencies) | |
| cmake/helpers/CheckDependentLibraries.cmake:145 (find_package) | |
| cmake/helpers/CheckDependentLibraries.cmake:770 (gdal_check_package) | |
| gdal.cmake:265 (include) | |
| CMakeLists.txt:246 (include) | |
| -- Checking for module 'libzstd' | |
| -- Found libzstd, version 1.5.5 | |
| -- Could NOT find zstdAlt (missing: ZSTD_LIB) (found version "1.5.5") | |
| CMake Warning at cmake/helpers/CheckDependentLibraries.cmake:145 (find_package): | |
| Found package configuration file: | |
| /project/boegelbot/Rocky8/haswell/software/Arrow/14.0.1-gfbf-2023a/lib64/cmake/Arrow/ArrowConfig.cmake | |
| but it set Arrow_FOUND to FALSE so package "Arrow" is considered to be NOT | |
| FOUND. Reason given by package: | |
| Arrow could not be found because dependency zstdAlt could not be found. | |
| Call Stack (most recent call first): | |
| cmake/helpers/CheckDependentLibraries.cmake:770 (gdal_check_package) | |
| gdal.cmake:265 (include) | |
| CMakeLists.txt:246 (include) | |
| -- Could NOT find JNI (missing: JAVA_INCLUDE_PATH JAVA_INCLUDE_PATH2 AWT JVM) | |
| -- Could NOT find Java (missing: Java_JAVA_EXECUTABLE Java_JAVAC_EXECUTABLE Java_JAR_EXECUTABLE Java_JAVADOC_EXECUTABLE Java_JAVAH_EXECUTABLE Runtime Development) | |
| CMake Warning at cmake/helpers/CheckDependentLibraries.cmake:793 (find_package): | |
| By not providing "FindCSharp.cmake" in CMAKE_MODULE_PATH this project has | |
| asked CMake to find a package configuration file provided by "CSharp", but | |
| CMake did not find one. | |
| Could not find a package configuration file provided by "CSharp" with any | |
| of the following names: | |
| CSharpConfig.cmake | |
| csharp-config.cmake | |
| Add the installation prefix of "CSharp" to CMAKE_PREFIX_PATH or set | |
| "CSharp_DIR" to a directory containing one of the above files. If "CSharp" | |
| provides a separate development package or SDK, be sure it has been | |
| installed. | |
| Call Stack (most recent call first): | |
| gdal.cmake:265 (include) | |
| CMakeLists.txt:246 (include) | |
| -- Performing Test HAS_NO_UNDEFINED | |
| -- Performing Test HAS_NO_UNDEFINED - Success | |
| CMake Error at frmts/zlib/contrib/infback9/CMakeLists.txt:13 (include): | |
| include could not find requested file: | |
| GdalDriverHelper | |
| CMake Error at frmts/zlib/contrib/infback9/CMakeLists.txt:17 (gdal_target_link_libraries): | |
| Unknown CMake command "gdal_target_link_libraries". | |
| -- Configuring incomplete, errors occurred! | |
| (at easybuild/easybuild-framework/easybuild/tools/run.py:682 in parse_cmd_output) | |
| == 2024-06-25 14:13:02,340 build_log.py:267 INFO ... (took 1 min 7 secs) | |
| == 2024-06-25 14:13:02,340 config.py:700 DEBUG software install path as specified by 'installpath' and 'subdir_software': /project/boegelbot/Rocky8/haswell/software | |
| == 2024-06-25 14:13:02,340 filetools.py:2013 INFO Removing lock /project/boegelbot/Rocky8/haswell/software/.locks/_project_boegelbot_Rocky8_haswell_software_GDAL_3.7.1-foss-2023a.lock... | |
| == 2024-06-25 14:13:02,341 filetools.py:383 INFO Path /project/boegelbot/Rocky8/haswell/software/.locks/_project_boegelbot_Rocky8_haswell_software_GDAL_3.7.1-foss-2023a.lock successfully removed. | |
| == 2024-06-25 14:13:02,342 filetools.py:2017 INFO Lock removed: /project/boegelbot/Rocky8/haswell/software/.locks/_project_boegelbot_Rocky8_haswell_software_GDAL_3.7.1-foss-2023a.lock | |
| == 2024-06-25 14:13:02,342 easyblock.py:4285 WARNING build failed (first 300 chars): cmd " cmake -DCMAKE_INSTALL_PREFIX=/project/boegelbot/Rocky8/haswell/software/GDAL/3.7.1-foss-2023a -DCMAKE_BUILD_TYPE=Release -DCMAKE_POLICY_DEFAULT_CMP0094=NEW -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DBOOST_ROOT=/project/boegelbot/Rocky8/haswell/software/Boost/1.82.0-GC | |
| == 2024-06-25 14:13:02,343 easyblock.py:328 INFO Closing log for application name GDAL version 3.7.1 |
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