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bogovicj/morphOpenGeneral.groovy

Last active June 14, 2019 12:15
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morphOpenGeneral.groovy
#@ OpService ops
#@ UIService ui
#@ Dataset(label="Binary image") image
#@ Integer(label="Width of the structuring element", min=1, value=1) width
/*
* A Fiji script for applying a morphological opening using imageJ ops,
*/
import net.imglib2.type.numeric.integer.*;
import net.imglib2.algorithm.neighborhood.*;
shape = new DiamondShape( width )
result = ops.create().img( image, new UnsignedByteType())
ops.morphology().open( result, image, [ shape ] )
ui.show( result )
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