booleanbiotech

import platform, multiprocessing
N_CPUS = multiprocessing.cpu_count() if platform.system() == 'Linux' else 5

booleanbiotech

seaborn==0.3.1
numexpr==2.3.1

booleanbiotech

#!/usr/bin/env python

#
# Create domino-appropriate python file
#
from subprocess import Popen, PIPE
p = Popen(["ipython", "nbconvert", "--config", "domino_config.py"], stdin=PIPE, stdout=PIPE, stderr=PIPE)
out1, err1 = p.communicate()

#

booleanbiotech

c = get_config()

#Export all the notebooks in the current directory to the sphinx_howto format.
c.NbConvertApp.notebooks = ['kaggle.ipynb']
c.NbConvertApp.export_format = 'python'
c.Exporter.preprocessors = ['domino_preprocessor.DominoPreprocessor']

booleanbiotech

from nbconvert.preprocessors import *

class DominoPreprocessor(Preprocessor):
    FIRSTCELL = None
    print_fn = """
global_out = open("stdout.ipy.txt",'w')
def print(*args, **kwargs):
    kwargs['file'] = global_out
    return __builtins__.print(*args, **kwargs)
"""

booleanbiotech

GCCACCATGGCCCAAGTGATCAACACCAACAGCCTGAGCCTGATCACCCAGAACAACATCAACAAGAACCAGAGCGCCCTGAGCAGCAGCATCGAGAGAC
TGAGCAGCGGCCTGAGAATCAACAGCGCCAAGGACGATGCCGCTGGCCAGGCTATCGCCAACAGATTCACCAGCAACATCAAGGGCCTGACCCAGGCCGC
CAGAAACGCCAACGATGGCATCAGCGTGGCCCAGACAACAGAGGGCGCACTGAGCGAGATCAACAACAACCTGCAGAGAGTGCGCGAGCTGACCGTGCAG
GCCACCACAGGCACAAACAGCGAGAGCGACCTGTCCAGCATCCAGGACGAGATCAAGAGCAGACTGGATGAGATCGACAGAGTGTCCGGCCAGACCCAGT
TCAACGGCGTGAACGTGCTGGCCAAGAACGGCAGCATGAAGATCCAAGTGGGCGCCAACGACAACCAGACCATCACCATCGACCTGAAGCAGATCGACGC
CAAGACCCTGGGCCTGGACGGCTTCTCTGTGAAGGCCCTGATCACAGCCAGCGGCGACATCAGCCTGACCTTCAAACAGGTGGACGGCGTGAACGACGTG
ACCCTGGAAAGCGTGAAGGTGTCCAGCTCTGCCGGCACAGGCATCGGCGTGCTGGCTGAAGTGATTAACAAGAACAGCAACAGGACCGGCGTGAAGGCCT
ACGCCAGCGTGATCACCACAAGCGACGTGGCCGTGCAGAGCGGCAGCCTGTCTAACCTGACCCTGAACGGCATCCACCTGGGCAATATCGCCGATATCAA
GAAGAACGACAGCGACGGCAGACTGGTGGCCGCCATCAACGCCGTGACAAGCGAGACAGGCGTGGAAGCCTACACCGACCAGAAGGGCAGACTGAACCTG
AGATCCATCGACGGCAGGGGCATCGAAATCAAGACCGACAGCGTGTCCAACGGCCCCTCCGCCCTGACAATGGTCAACGGCGGACAGGACCTGACCAAGG

booleanbiotech

GACTCTTCGCGATGTACGGGCCAGATATACGCGTTGACATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGGGTCATTAGTTCATAGCCCATAT
ATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCCGCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCATAG
TAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGACTATTTACGGTAAACTGCCCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTACGCC
CCCTATTGACGTCAATGACGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTATGGGACTTTCCTACTTGGCAGTACATCTACGTATTAGTC
ATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACATCAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGTCA
ATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAACAACTCCGCCCCATTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGA
GGTCTATATAAGCAGAGCTCTCTGGCTAACTAGAGAACCCACTGCTTACTGGCTTATCGAAATTAATACGACTCACTATAGGGAGACCCAAGCTGGCTAG
CGTTTAAACTTAAGCTTGGTACCGAGCTCGGATCCACTAGTCCAGTGTGGTGGAATTCTGCAGATATCCAGCACAGTGGCGGCCGCTCGAGTCTAGAGGG
CCCGTTTAAACCCGCTGATCAGCCTCGACTGTGCCTTCTAGTTGCCAGCCATCTGTTGTTTGCCCCTCCCCCGTGCCTTCCTTGACCCTGGAAGGTGCCA
CTCCCACTGTCCTTTCCTAATAAAATGAGGAAATTGCATCGCATTGTCTGAGTAGGTGTCATTCTATTCTGGGGGGTGGGGTGGGGCAGGACAGCAAGGG

booleanbiotech

# -*- coding: utf-8 -*-
# Run with: scrapy crawl test1 -o test1.json
import scrapy

class IgemItem(scrapy.Item):
    year = scrapy.Field()
    title = scrapy.Field()
    subtitle = scrapy.Field()
    description = scrapy.Field()

booleanbiotech

CLUSTAL O(121) multiple sequence alignment

LifeTech              GCCACCATGGCCCAAGTGATCAACACCAACAGCCTGAGCCTGATCACCCAGAACAACATC
Slovenia              ------atggcacaagtcattaataccaacagcctctcgctgatcactcaaaataatatc
                            ***** ***** ** ** ***********    ******** ** ** ** ***

LifeTech              AACAAGAACCAGAGCGCCCTGAGCAGCAGCATCGAGAGACTGAGCAGCGGCCTGAGAATC
Slovenia              aacaagaaccagtctgcgctgtcgagttctatcgagcgtctgtcttctggcttgcgtatt
                      ************   ** ***   **    ****** * ***      *** ** * **

booleanbiotech

CLUSTAL O(1.2.1) multiple sequence alignment


IDT           ------ATGGCACAGGTCATTAATACTAATAGTCTGAGTCTGATCACTCAGAATAACATC
LifeTech      GCCACCATGGCCCAAGTGATCAACACCAACAGCCTGAGCCTGATCACCCAGAACAACATC
JCAT          ------ATGGCCCAGGTGATCAACACCAACAGCCTGAGCCTGATCACCCAGAACAACATC
                    *****.**.** ** ** ** ** ** ***** ******** ***** ******

IDT           AACAAAAACCAATCAGCCCTGTCAAGTTCCATAGAGAGGCTGAGTAGCGGACTGAGGATA
LifeTech      AACAAGAACCAGAGCGCCCTGAGCAGCAGCATCGAGAGACTGAGCAGCGGCCTGAGAATC