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boopsboops/tlb2asn.sh

Last active August 29, 2015 14:19
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Running 'tlb2asn'
Raw
tlb2asn.sh
# Here we use -a flag to specify fasta file format type,
# the -V flag to request verification (v) and a GenBank flatfile as part of the output (b),
# and the -T flag to tell the program to generate the higher taxonomic classifications for our record.
# Use 'tbl2asn --help' for a full list of the options
# To run if in PATH
tbl2asn -t template.sbt -i sequences.fsa -f features.tbl -a s -V vb -T
# To run if local
./tbl2asn -t template.sbt -i sequences.fsa -f features.tbl -a s -V vb -T
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