dock input file to generate footprints

dock_footprints.in

ligand_atom_file                                             LIG
limit_max_ligands                                            no
skip_molecule                                                no
read_mol_solvation                                           no
calculate_rmsd                                               no
use_database_filter                                          no
orient_ligand                                                no
use_internal_energy                                          no
flexible_ligand                                              no
bump_filter                                                  no
score_molecules                                              yes
contact_score_primary                                        no
contact_score_secondary                                      no
grid_score_primary                                           no
grid_score_secondary                                         no
dock3.5_score_primary                                        no
dock3.5_score_secondary                                      no
continuous_score_primary                                     no
continuous_score_secondary                                   no
descriptor_score_primary                                     yes
descriptor_score_secondary                                   no
desc_use_footprint_reference_mol2                            yes
desc_footprint_reference_mol2_filename                       tmp_ref.mol2
desc_foot_compare_type                                       r
desc_foot_comp_all_residue                                   yes
desc_score_rec_filename                                      REC
desc_score_att_exp                                           6
desc_score_rep_exp                                           12
desc_score_rep_rad_scale                                     1
desc_use_distance_dependent_dielectric                       yes
desc_score_dielectric                                        4.0
desc_score_vdw_scale                                         1
desc_score_es_scale                                          1
desc_score_hb_scale                                          0
desc_score_internal_scale                                    0
desc_score_fp_vwd_scale                                      0
desc_score_fp_es_scale                                       0
desc_score_fp_hb_scale                                       0
gbsa_zou_score_secondary                                     no
gbsa_hawkins_score_secondary                                 no
amber_score_secondary                                        no
minimize_ligand                                              no
atom_model                                                   all
vdw_defn_file                                                /c5/shared/dock/6.5/gnu/parameters/vdw_AMBER_parm99.defn
flex_defn_file                                               /c5/shared/dock/6.5/gnu/parameters/flex.defn
flex_drive_file                                              /c5/shared/dock/6.5/gnu/parameters/flex_drive.tbl
ligand_outfile_prefix                                        OUT
write_footprints                                             yes
write_hbonds                                                 yes
write_orientations                                           no
num_scored_conformers                                        1
rank_ligands                                                 no