bradfordcondon

#run database updates
drush updatedb
## Force a specific update to run
drush eval "module_load_install('tripal_elasticsearch'); tripal_elasticsearch_update_7201();"
drush dre [modulename]  #disable, uninstall, re-install, enable module

bradfordcondon

docker volume ls  #list all volumes
docker-compose up #start a container via docker compose

bradfordcondon

#remove all images
docker rmi $(docker images -a -q)
#stop and remove all containers
docker stop $(docker ps -a -q)
docker rm $(docker ps -a -q)
#remove all volumes
docker volume rm $(docker volume ls -f dangling=true -q)

# List all images
docker images

bradfordcondon

docker-compose up -d nginx mysql # bring up container with nginx and mysql

docker-compose exec workspace bash # enter workspace

docker-compose exec --user=laradock workspace bash # To have files created as the host's user, specify user = laradock 

bradfordcondon

Still under construction. Converting my v3 d3 plot to a bl.ock.

This plot demonstrates how to create a very simple grouped bar plot.

bradfordcondon

A simple D3 plot for www.bradfordcondon.com. This is for a blog series on breaking down and understanding D3.js, version 3. This is Blog post number one.

bradfordcondon

require_once '../includes/tripal_alchemist.api.inc';
use PHPUnit\Framework\TestCase;
use PHPUnit\DbUnit\TestCaseTrait;
//Change this path for the docker!
define('DRUPAL_ROOT', '/Users/chet/UTK/tripal');
$start = getcwd();

require_once DRUPAL_ROOT . '/includes/bootstrap.inc';
$_SERVER['REMOTE_ADDR'] = '127.0.0.1';

bradfordcondon

git rebase -i HEAD~4 # rebase branch back the number of commits

git commit --amend # make sure the commit message is awesome

git push origin branch-name --force   # need to force the commits if you've already pushed

bradfordcondon

CREATE TRIGGER check_ao_linker
    AFTER INSERT ON feature
    FOR ROW
    EXECUTE PROCEDURE update_ao_linker();

CREATE TRIGGER check_ao_linker_update
    AFTER UPDATE ON feature ON organism_id
    FOR ROW
    EXECUTE PROCEDURE update_ao_linker();

bradfordcondon

{
  "#": "cmap-js chinese chestnut configuration file",
  "header": ": Chinese Chestnut Genetic map",
  "attribution": "HWG",
  "initialView": [
    {
      "source": "Chinese Chestnut Genetic Map",
      "map": "A"
    },
      {