Skip to content

Instantly share code, notes, and snippets.

View bramalingam's full-sized avatar

Balaji Ramalingam bramalingam

  • Astrazeneca UK Limited
  • Oxford
View GitHub Profile
@bramalingam
bramalingam / gist:76277e5fa2f0acdd6886
Created August 5, 2015 15:27
Error : Cellomics xml Parsing
Last login: Wed Aug 5 14:29:02 on ttys001
ls29010:tools bramalingam$ ./showinf -omexml /Volumes/ome/data_repo/from_skyking/cellomics/qa-7352/test/MFGTMP-PC_130509120002_B02f00d0.C01
*** A new stable version is available. ***
*** Install the new version using: ***
*** 'upgradechecker -install' ***
Checking file format [Cellomics C01]
Initializing reader
CellomicsReader initializing /Volumes/ome/data_repo/from_skyking/cellomics/qa-7352/test/MFGTMP-PC_130509120002_B02f00d0.C01
Decompressing file
Reading header data
@bramalingam
bramalingam / Micromanager_Matlab_OMERO.m
Last active March 14, 2020 10:21
Integration : Micromanager+Matlab+OMERO
%Multiple sites imaging
%and image analysis(identifying cells with a circularity index>0.8)
%feedback, based on number of cells, change objective to check assay qc
%Author : Balaji.R
%Init
clear all;close all;
%Import packages
import mmcorej.*;