gistfile1.txt

       File                                            Function            Line
48.0 % /Users/brendano/Desktop/hier_lda/code/treetm.jl cgsIterPath          389             qnewLL,pnewLL = proposePath!(newpath, mm, V,di,word, first ? nothing : oldpath, :simulate)
41.6 % /Users/brendano/Desktop/hier_lda/code/treetm.jl cgsIterPath          390             qoldLL,poldLL = proposePath!(oldpath, mm, V,di,word, first ? nothing : oldpath, :evaluate)
 1.1 % /Users/brendano/Desktop/hier_lda/code/treetm.jl cgsIterPath          391             logA = pnewLL-poldLL + qoldLL-qnewLL  #  (pnew-qnew) - (pold-qnew)
 3.0 % /Users/brendano/Desktop/hier_lda/code/treetm.jl cgsIterPath          402                 incrementFullpath!(mm.cTopicWord, newpath, word, +1)
 3.1 % /Users/brendano/Desktop/hier_lda/code/treetm.jl cgsIterPath          408                     incrementFullpath!(mm.cTopicWord, oldpath, word, -1)
 2.7 % /Users/brendano/Desktop/hier_lda/code/treetm.jl getindex              82 getindex(c::ClassCountTable, k) = c.counts[k]
 2.2 % /Users/brendano/Desktop/hier_lda/code/treetm.jl incrementFullpath!   125         x = b ? x.right : x.left
 1.2 % /Users/brendano/Desktop/hier_lda/code/treetm.jl incrementFullpath!   161         x = b ? x.right : x.left
 4.0 % /Users/brendano/Desktop/hier_lda/code/treetm.jl incrementFullpath!   162         increment!(x.counts, k, delta)
20.2 % /Users/brendano/Desktop/hier_lda/code/treetm.jl proposePath!         342         w0 = (nn.counts[wordID] + betaHere/V - on0) / (nn.counts.total + betaHere - int(on_cur))
18.4 % /Users/brendano/Desktop/hier_lda/code/treetm.jl proposePath!         344         w1 = (nn.counts[wordID] + betaHere/V - on1) / (nn.counts.total + betaHere - int(on_cur))
 6.3 % /Users/brendano/Desktop/hier_lda/code/treetm.jl proposePath!         345         p0 = (cur_docnode.left.count + mm.gammaConc/2 - on0)
 6.6 % /Users/brendano/Desktop/hier_lda/code/treetm.jl proposePath!         346         p1 = (cur_docnode.right.count+ mm.gammaConc/2 - on1)
 7.3 % /Users/brendano/Desktop/hier_lda/code/treetm.jl proposePath!         347         q = p1*w1 / (p1*w1 + p0*w0)
 1.5 % /Users/brendano/Desktop/hier_lda/code/treetm.jl proposePath!         350             dec = bool(rand() < q)
 8.5 % /Users/brendano/Desktop/hier_lda/code/treetm.jl proposePath!         356         proposalLL += dec ? log(q) : log(1-q)
10.5 % /Users/brendano/Desktop/hier_lda/code/treetm.jl proposePath!         357         unnormLL += dec ? log(p1/(p0+p1)) : log(p0/(p0+p1))   # only the prior branch prob
 4.2 % /Users/brendano/Desktop/hier_lda/code/treetm.jl proposePath!         373     wp = (nn.counts[wordID] + mm.betaConc/V +rem) / (nn.counts.total + mm.betaConc +rem)
 1.1 % /Users/brendano/Desktop/hier_lda/code/treetm.jl proposePath!         374     unnormLL += log(wp)