Brian M. Bot brian-bot
brian-bot
/ nbaDraftChalk.R
Created
July 20, 2016 21:08
calculation for the probability of the NBA Draft lottery going as 'chalk'
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| ## NBA DRAFT ODDS - CHANCES OF 'CHALK' | |
| chancesInOrder <- c(250, 199, 156, 119, 88, 63, 43, 28, 17, 11, 8, 7, 6, 5) | |
| conditionalProb <- 1 | |
| for(i in 1:3){ | |
| conditionalProb <- conditionalProb*chancesInOrder[i]/sum(chancesInOrder[i:length(chancesInOrder)]) | |
| } | |
| conditionalProb | |
| # > conditionalProb |
brian-bot
/ runAttractorInCRCSC.R
Last active
August 29, 2015 14:08
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| runAttractorInCRCSC <- function(projectId){ | |
| require(synapseClient) | |
| thisFile <- "https://gist.github.com/brian-bot/3f2b74694f58404c93fd" | |
| ## PULL FROM THE LINK THAT WAS CREATED IN THE PROJECT AT AN EARLIER STAGE | |
| findLink <- synapseQuery(paste('SELECT id, name FROM link WHERE benefactorId=="', projectId, '"')) | |
| resolveLink <- synGet(findLink$link.id[findLink$link.name=="COAD.attractors.rnaseq.txt"][1]) | |
| ## GET THE ATTRACTOR METAGENES FOR TCGA COAD FROM THE LINK |
brian-bot
/ copyWikis.R
Last active
August 29, 2015 13:58
primitive function for copying Synapse Wiki content from one resource to another
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| ##### | |
| ## FUNCTION FOR COPYING ALL SYNAPSE WIKI CONTENT (AND SUBPAGES) FROM ONE OWNER RESOURCE TO ANOTHER | |
| ## AUTHOR: BRIAN M. BOT | |
| ##### | |
| ## ARGUMENTS: | |
| ## oldOwnerId - the Synapse ID of the resource (e.g. Project) to copy the wiki content from | |
| ## newOwnerId - the Synapse ID of the resource (e.g. Project) to copy the wiki content to | |
| ##### | |
| ## VALUE: | |
| ## Silently returns the Wiki headers from the new owner |
brian-bot
/ synTable.R
Last active
December 20, 2015 21:28
A function to render Synapse-specific markdown for table rendering
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| ##### | |
| ## AUTHOR: BRIAN M. BOT | |
| ## ORGANIZATION: SAGE BIONETWORKS | |
| ## | |
| ## FUNCTION TO RENDER SYNAPSE-SPECIFIC MARKDOWN FOR TABLE RENDERING | |
| ##### | |
| ## PARAMETERS: | |
| ## x: an R object of class data.frame, matrix, or table | |
| ## row.names (=TRUE): whether or not to include row names in the table (if available) | |
| ## col.names (=TRUE): whether or not to include column names in the table (if available) |
brian-bot
/ knit2synapse.R
Last active
November 23, 2020 18:37
A function to allow users to leverage knitr functionality when constructing Synapse wiki content.
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| ##### | |
| ## AUTHOR: BRIAN M. BOT | |
| ## ORGANIZATION: SAGE BIONETWORKS | |
| ## | |
| ## ALLOW USERS TO LEVERAGE KNITR WHEN CONSTRUCTING SYNAPSE WIKI CONTENT | |
| ##### | |
| ## PARAMETERS: | |
| ## file: path to a local .Rmd file which to knit | |
| ## owner: a Synapse object which will own the resulting WikiPage (usually a Project, Folder, or File) | |
| ## parentWikiId (optional): if the resulting WikiPage is to be a subpage of another WikiPage, this is the id for the parent WikiPage (NOTE: owner is still required) |