Lep-MAP refactor part 1

gistfile1.py

        elif line.startswith("alleles"):
            #this is the second line
            alleles = line.strip().split()[1:]
        else:  # This "else" is currently on line 64
            columns = line.split()
            individual_info = get_ind_info(columns)
            
            # I chopped out a bunch of stuff here
            
            group = individual_info['group']
            indID = individual_info['indID']
            mother = individual_info['mother']
            father = individual_info['father']
            sex = individual_info['sex']
            affected = individual_invo['affected']
            
            # Picking back up at what used to be line 91 ...
            locusgenotype = []
            newline = str(group) + "\t" + str(indID) + "\t" + str(mother) + "\t" + str(father) + "\t" + str(sex) + "\t" + str(affected) + "\t"
            for i, genotype in enumerate(genotypes):
                current_allele = alleles[i]
                if isoffspring:
            ...