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November 24, 2015 23:25
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1.1rc1 python2.7 numpy 1.10 Yosemite remote_data
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============================= test session starts ============================== | |
platform darwin -- Python 2.7.10 -- py-1.4.30 -- pytest-2.7.3 | |
rootdir: /Users/bsipocz/.local/lib/python2.7/site-packages/astropy, inifile: | |
plugins: cov, html, mpl, selenium, selenium, variables | |
Running tests with Astropy version 1.1rc1. | |
Running tests in /Users/bsipocz/.local/lib/python2.7/site-packages/astropy. | |
Date: 2015-11-24T22:50:12 | |
Platform: Darwin-14.5.0-x86_64-i386-64bit | |
Executable: /sw/bin/python | |
Full Python Version: | |
2.7.10 (default, May 26 2015, 20:29:34) | |
[GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.57)] | |
encodings: sys: ascii, locale: UTF-8, filesystem: utf-8, unicode bits: 15 | |
byteorder: little | |
float info: dig: 15, mant_dig: 15 | |
Numpy: 1.10.1 | |
Scipy: 0.16.0 | |
Matplotlib: 1.5.0 | |
h5py: not available | |
Using Astropy options: remote_data. | |
collected 9860 items / 2 errors | |
../../../../.local/lib/python2.7/site-packages/astropy/_erfa/tests/test_erfa.py ..... | |
../../../../.local/lib/python2.7/site-packages/astropy/analytic_functions/tests/test_blackbody.py ..... | |
../../../../.local/lib/python2.7/site-packages/astropy/config/tests/test_configs.py ................. | |
../../../../.local/lib/python2.7/site-packages/astropy/constants/tests/test_constant.py ................ | |
../../../../.local/lib/python2.7/site-packages/astropy/constants/tests/test_pickle.py xxxxxxxxx | |
../../../../.local/lib/python2.7/site-packages/astropy/convolution/tests/test_convolve.py ............................................................................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/convolution/tests/test_convolve_fft.py ................................................................................................................................................................................................................................................................................................................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/convolution/tests/test_convolve_kernels.py .............................................................................. | |
../../../../.local/lib/python2.7/site-packages/astropy/convolution/tests/test_discretize.py ...s...........s............... | |
../../../../.local/lib/python2.7/site-packages/astropy/convolution/tests/test_kernel_class.py ........................................................................................................................................................................................ | |
../../../../.local/lib/python2.7/site-packages/astropy/convolution/tests/test_pickle.py .xx.xx.xx | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_angles.py ................................................................................ | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_angular_separation.py .... | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_api_ape5.py ..... | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_arrays.py .......................... | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_celestial_transformations.py .......... | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_distance.py .F....... | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_earth.py .......................... | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_formatting.py .................... | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_frames.py ......................F. | |
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../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_iau_fullstack.py .................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_intermediate_transformations.py ................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_matching.py ...... | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_name_resolve.py F..F.. | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_pickle.py ....xx.x...xx.x...xx.x. | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_regression.py ....... | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_representation.py ............................................................................. | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_sites.py ....... | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_sky_coord.py ........................................................................................................................................................................................................................................................................................................................................................................................x................. | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_transformations.py ...... | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_unit_representation.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/accuracy/test_altaz_icrs.py ...x | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/accuracy/test_ecliptic.py ... | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/accuracy/test_fk4_no_e_fk4.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/accuracy/test_fk4_no_e_fk5.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/accuracy/test_galactic_fk4.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/accuracy/test_icrs_fk5.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/cosmology/tests/test_cosmology.py ..................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/cosmology/tests/test_pickle.py ... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/ascii/tests/test_c_reader.py ...........................x..................x.......x.x................. | |
../../../../.local/lib/python2.7/site-packages/astropy/io/ascii/tests/test_cds_header_from_readme.py ... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/ascii/tests/test_compressed.py .....xx | |
../../../../.local/lib/python2.7/site-packages/astropy/io/ascii/tests/test_connect.py ........................ | |
../../../../.local/lib/python2.7/site-packages/astropy/io/ascii/tests/test_ecsv.py ....... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/ascii/tests/test_fixedwidth.py .............................................................. | |
../../../../.local/lib/python2.7/site-packages/astropy/io/ascii/tests/test_html.py ........s....... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/ascii/tests/test_ipac_definitions.py ........................................ | |
../../../../.local/lib/python2.7/site-packages/astropy/io/ascii/tests/test_read.py .................................................................................................................................................................................................................. | |
../../../../.local/lib/python2.7/site-packages/astropy/io/ascii/tests/test_types.py ...... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/ascii/tests/test_write.py .............................. | |
../../../../.local/lib/python2.7/site-packages/astropy/io/fits/tests/test_checksum.py ..................... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/fits/tests/test_connect.py .......................... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/fits/tests/test_core.py ............................................................. | |
../../../../.local/lib/python2.7/site-packages/astropy/io/fits/tests/test_diff.py ................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/fits/tests/test_division.py ..... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/fits/tests/test_groups.py ........ | |
../../../../.local/lib/python2.7/site-packages/astropy/io/fits/tests/test_hdulist.py ......................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/fits/tests/test_header.py ................................................................................................................................................ | |
../../../../.local/lib/python2.7/site-packages/astropy/io/fits/tests/test_image.py ...................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/fits/tests/test_nonstandard.py ... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/fits/tests/test_structured.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/io/fits/tests/test_table.py .................................x..................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/fits/tests/test_uint.py ........ | |
../../../../.local/lib/python2.7/site-packages/astropy/io/fits/tests/test_util.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/io/misc/tests/test_hdf5.py sssssssssssssssssssssssssssssssssssssssss | |
../../../../.local/lib/python2.7/site-packages/astropy/io/misc/tests/test_pickle_helpers.py .... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/tests/test_registry.py ............................................................ | |
../../../../.local/lib/python2.7/site-packages/astropy/io/votable/tests/converter_test.py ............................................ | |
../../../../.local/lib/python2.7/site-packages/astropy/io/votable/tests/exception_test.py .. | |
../../../../.local/lib/python2.7/site-packages/astropy/io/votable/tests/table_test.py ................ | |
../../../../.local/lib/python2.7/site-packages/astropy/io/votable/tests/tree_test.py ... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/votable/tests/ucd_test.py .......... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/votable/tests/util_test.py ...................... | |
../../../../.local/lib/python2.7/site-packages/astropy/io/votable/tests/vo_test.py .................................................................................................................................................................................................................................................................................................................................................. | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_compound.py ..........................................FF........s | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_constraints.py ..................... | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_core.py ............. | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_fitters.py ................... | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_functional_models.py ........... | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_input.py ...................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_mappings.py ...... | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_models.py ................. | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_parameters.py .................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_polynomial.py ............................s......... | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_projections.py ....................................................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_rotations.py ............. | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_utils.py ... | |
../../../../.local/lib/python2.7/site-packages/astropy/nddata/mixins/tests/test_ndarithmetic.py ................................................................................................................ | |
../../../../.local/lib/python2.7/site-packages/astropy/nddata/mixins/tests/test_ndio.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/nddata/tests/test_compat.py ................ | |
../../../../.local/lib/python2.7/site-packages/astropy/nddata/tests/test_decorators.py .......... | |
../../../../.local/lib/python2.7/site-packages/astropy/nddata/tests/test_flag_collection.py .................... | |
../../../../.local/lib/python2.7/site-packages/astropy/nddata/tests/test_nddata.py .................................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/nddata/tests/test_nddata_base.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/nddata/tests/test_utils.py ..................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/stats/tests/test_bayesian_blocks.py ....... | |
../../../../.local/lib/python2.7/site-packages/astropy/stats/tests/test_funcs.py ................................. | |
../../../../.local/lib/python2.7/site-packages/astropy/stats/tests/test_histogram.py ......... | |
../../../../.local/lib/python2.7/site-packages/astropy/stats/tests/test_sigma_clipping.py ..... | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_array.py ... | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_bst.py ....... | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_column.py ...................................................................................................................................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_groups.py ............................................................................ | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_index.py ................................................................................................................................................................................................................................................................................................................................................................................................................................................ | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_info.py ........................ | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_init_table.py ...................................................................................................................................................................................................................................................................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_item_access.py ............................................................ | |
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../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_masked.py .................................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_mixin.py ..............................................................x.... | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_np_utils.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_operations.py ............................................................................ | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_pickle.py ............... | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_pprint.py ................................................................................................................ | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_row.py .................................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_subclass.py .... | |
../../../../.local/lib/python2.7/site-packages/astropy/table/tests/test_table.py ................................................................................................................................................................................................................................................................................................x........................................................................................................................................................................................................................................................................................................................................x........................................ | |
../../../../.local/lib/python2.7/site-packages/astropy/tests/test_logger.py ............................. | |
../../../../.local/lib/python2.7/site-packages/astropy/tests/tests/test_imports.py .. | |
../../../../.local/lib/python2.7/site-packages/astropy/tests/tests/test_open_file_detection.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/tests/tests/test_quantity_helpers.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/tests/tests/test_run_tests.py ........ | |
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../../../../.local/lib/python2.7/site-packages/astropy/time/tests/test_basic.py .............................................................................................................. | |
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../../../../.local/lib/python2.7/site-packages/astropy/time/tests/test_delta.py ................................................................................. | |
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../../../../.local/lib/python2.7/site-packages/astropy/time/tests/test_methods.py .............................................................................................. | |
../../../../.local/lib/python2.7/site-packages/astropy/time/tests/test_pickle.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/time/tests/test_precision.py .......x.. | |
../../../../.local/lib/python2.7/site-packages/astropy/time/tests/test_quantity_interaction.py ............... | |
../../../../.local/lib/python2.7/site-packages/astropy/time/tests/test_sidereal.py ................... | |
../../../../.local/lib/python2.7/site-packages/astropy/time/tests/test_ut1.py ...s | |
../../../../.local/lib/python2.7/site-packages/astropy/units/tests/test_equivalencies.py ..................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/units/tests/test_format.py .................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | |
../../../../.local/lib/python2.7/site-packages/astropy/units/tests/test_logarithmic.py .......ss.s...s...................s............................................................. | |
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../../../../.local/lib/python2.7/site-packages/astropy/units/tests/test_quantity_array_methods.py .............................x............x.x............. | |
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../../../../.local/lib/python2.7/site-packages/astropy/utils/compat/numpy/tests/test_broadcast_arrays.py .... | |
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../../../../.local/lib/python2.7/site-packages/astropy/utils/tests/test_collections.py ..... | |
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../../../../.local/lib/python2.7/site-packages/astropy/utils/tests/test_console.py .................................................. | |
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../../../../.local/lib/python2.7/site-packages/astropy/utils/tests/test_data_info.py .......................... | |
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../../../../.local/lib/python2.7/site-packages/astropy/utils/tests/test_metadata.py ............... | |
../../../../.local/lib/python2.7/site-packages/astropy/utils/tests/test_misc.py ..... | |
../../../../.local/lib/python2.7/site-packages/astropy/utils/tests/test_odict.py sssssssssssssssssssssssssssssssssssssssssss | |
../../../../.local/lib/python2.7/site-packages/astropy/utils/tests/test_state.py F. | |
../../../../.local/lib/python2.7/site-packages/astropy/utils/tests/test_timer.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/utils/tests/test_xml.py ........ | |
../../../../.local/lib/python2.7/site-packages/astropy/visualization/scripts/tests/test_fits2bitmap.py .. | |
../../../../.local/lib/python2.7/site-packages/astropy/visualization/tests/test_histogram.py ... | |
../../../../.local/lib/python2.7/site-packages/astropy/visualization/tests/test_interval.py ................. | |
../../../../.local/lib/python2.7/site-packages/astropy/visualization/tests/test_norm.py s...... | |
../../../../.local/lib/python2.7/site-packages/astropy/visualization/tests/test_stretch.py ................................................................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/visualization/tests/test_ui.py ...... | |
../../../../.local/lib/python2.7/site-packages/astropy/visualization/tests/test_units.py .. | |
../../../../.local/lib/python2.7/site-packages/astropy/vo/client/tests/test_conesearch.py .................x. | |
../../../../.local/lib/python2.7/site-packages/astropy/vo/client/tests/test_vos_catalog.py ............... | |
../../../../.local/lib/python2.7/site-packages/astropy/vo/samp/tests/test_client.py .... | |
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../../../../.local/lib/python2.7/site-packages/astropy/vo/samp/tests/test_hub_proxy.py ..... | |
../../../../.local/lib/python2.7/site-packages/astropy/vo/samp/tests/test_hub_script.py . | |
../../../../.local/lib/python2.7/site-packages/astropy/vo/samp/tests/test_standard_profile.py ... | |
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../../../../.local/lib/python2.7/site-packages/astropy/vo/validator/tests/test_inpect.py .... | |
../../../../.local/lib/python2.7/site-packages/astropy/vo/validator/tests/test_validate.py .... | |
../../../../.local/lib/python2.7/site-packages/astropy/wcs/tests/test_pickle.py ...... | |
../../../../.local/lib/python2.7/site-packages/astropy/wcs/tests/test_profiling.py .................................. | |
../../../../.local/lib/python2.7/site-packages/astropy/wcs/tests/test_utils.py ......................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/wcs/tests/test_wcs.py .................................................................................................................................................... | |
../../../../.local/lib/python2.7/site-packages/astropy/wcs/tests/test_wcsprm.py .....................................................................................................x.....XX.. | |
../../../../.local/lib/python2.7/site-packages/astropy/wcs/tests/extension/test_extension.py . | |
==================================== ERRORS ==================================== | |
________________ ERROR collecting modeling/tests/test_models.py ________________ | |
_pytest.runner:149: in __init__ | |
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_pytest.main:437: in _memocollect | |
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_pytest.main:314: in _memoizedcall | |
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_pytest.main:437: in <lambda> | |
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_pytest.python:573: in collect | |
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_pytest.python:365: in collect | |
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_pytest.python:377: in makeitem | |
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_pytest.core:521: in __call__ | |
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_pytest.core:528: in _docall | |
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_pytest.core:393: in execute | |
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_pytest.core:109: in wrapped_call | |
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_pytest.python:255: in pytest_pycollect_makeitem | |
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_pytest.python:394: in _genfunctions | |
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_pytest.core:524: in callextra | |
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_pytest.core:528: in _docall | |
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_pytest.core:394: in execute | |
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_pytest.python:164: in pytest_generate_tests | |
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_pytest.python:879: in parametrize | |
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_pytest.python:752: in setmulti | |
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_pytest.python:735: in _checkargnotcontained | |
??? | |
E ValueError: duplicate u'model_class' | |
________________ ERROR collecting modeling/tests/test_models.py ________________ | |
_pytest.runner:149: in __init__ | |
??? | |
_pytest.main:437: in _memocollect | |
??? | |
_pytest.main:314: in _memoizedcall | |
??? | |
_pytest.main:437: in <lambda> | |
??? | |
_pytest.python:573: in collect | |
??? | |
_pytest.python:365: in collect | |
??? | |
_pytest.python:377: in makeitem | |
??? | |
_pytest.core:521: in __call__ | |
??? | |
_pytest.core:528: in _docall | |
??? | |
_pytest.core:393: in execute | |
??? | |
_pytest.core:109: in wrapped_call | |
??? | |
_pytest.python:255: in pytest_pycollect_makeitem | |
??? | |
_pytest.python:394: in _genfunctions | |
??? | |
_pytest.core:524: in callextra | |
??? | |
_pytest.core:528: in _docall | |
??? | |
_pytest.core:394: in execute | |
??? | |
_pytest.python:164: in pytest_generate_tests | |
??? | |
_pytest.python:879: in parametrize | |
??? | |
_pytest.python:752: in setmulti | |
??? | |
_pytest.python:735: in _checkargnotcontained | |
??? | |
E ValueError: duplicate u'model_class' | |
=================================== FAILURES =================================== | |
_____________________________ test_distances_scipy _____________________________ | |
@pytest.mark.skipif(str('not HAS_SCIPY')) | |
def test_distances_scipy(): | |
""" | |
The distance-related tests that require scipy due to the cosmology | |
module needing scipy integration routines | |
""" | |
from ...cosmology import WMAP5 | |
#try different ways to initialize a Distance | |
d4 = Distance(z=0.23) # uses default cosmology - as of writing, WMAP7 | |
> npt.assert_allclose(d4.z, 0.23, rtol=1e-8) | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_distance.py:123: | |
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
/sw/lib/python2.7/site-packages/numpy/testing/utils.py:1347: in assert_allclose | |
verbose=verbose, header=header) | |
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
comparison = <function compare at 0x1163cbed8>, x = array(0.2300000025478198) | |
y = array(0.23), err_msg = '', verbose = True | |
header = 'Not equal to tolerance rtol=1e-08, atol=0', precision = 6 | |
def assert_array_compare(comparison, x, y, err_msg='', verbose=True, | |
header='', precision=6): | |
from numpy.core import array, isnan, isinf, any, all, inf | |
x = array(x, copy=False, subok=True) | |
y = array(y, copy=False, subok=True) | |
def safe_comparison(*args, **kwargs): | |
# There are a number of cases where comparing two arrays hits special | |
# cases in array_richcompare, specifically around strings and void | |
# dtypes. Basically, we just can't do comparisons involving these | |
# types, unless both arrays have exactly the *same* type. So | |
# e.g. you can apply == to two string arrays, or two arrays with | |
# identical structured dtypes. But if you compare a non-string array | |
# to a string array, or two arrays with non-identical structured | |
# dtypes, or anything like that, then internally stuff blows up. | |
# Currently, when things blow up, we just return a scalar False or | |
# True. But we also emit a DeprecationWarning, b/c eventually we | |
# should raise an error here. (Ideally we might even make this work | |
# properly, but since that will require rewriting a bunch of how | |
# ufuncs work then we are not counting on that.) | |
# | |
# The point of this little function is to let the DeprecationWarning | |
# pass (or maybe eventually catch the errors and return False, I | |
# dunno, that's a little trickier and we can figure that out when the | |
# time comes). | |
with warnings.catch_warnings(): | |
warnings.filterwarnings("ignore", category=DeprecationWarning) | |
return comparison(*args, **kwargs) | |
def isnumber(x): | |
return x.dtype.char in '?bhilqpBHILQPefdgFDG' | |
def chk_same_position(x_id, y_id, hasval='nan'): | |
"""Handling nan/inf: check that x and y have the nan/inf at the same | |
locations.""" | |
try: | |
assert_array_equal(x_id, y_id) | |
except AssertionError: | |
msg = build_err_msg([x, y], | |
err_msg + '\nx and y %s location mismatch:' | |
% (hasval), verbose=verbose, header=header, | |
names=('x', 'y'), precision=precision) | |
raise AssertionError(msg) | |
try: | |
cond = (x.shape == () or y.shape == ()) or x.shape == y.shape | |
if not cond: | |
msg = build_err_msg([x, y], | |
err_msg | |
+ '\n(shapes %s, %s mismatch)' % (x.shape, | |
y.shape), | |
verbose=verbose, header=header, | |
names=('x', 'y'), precision=precision) | |
if not cond: | |
raise AssertionError(msg) | |
if isnumber(x) and isnumber(y): | |
x_isnan, y_isnan = isnan(x), isnan(y) | |
x_isinf, y_isinf = isinf(x), isinf(y) | |
# Validate that the special values are in the same place | |
if any(x_isnan) or any(y_isnan): | |
chk_same_position(x_isnan, y_isnan, hasval='nan') | |
if any(x_isinf) or any(y_isinf): | |
# Check +inf and -inf separately, since they are different | |
chk_same_position(x == +inf, y == +inf, hasval='+inf') | |
chk_same_position(x == -inf, y == -inf, hasval='-inf') | |
# Combine all the special values | |
x_id, y_id = x_isnan, y_isnan | |
x_id |= x_isinf | |
y_id |= y_isinf | |
# Only do the comparison if actual values are left | |
if all(x_id): | |
return | |
if any(x_id): | |
val = safe_comparison(x[~x_id], y[~y_id]) | |
else: | |
val = safe_comparison(x, y) | |
else: | |
val = safe_comparison(x, y) | |
if isinstance(val, bool): | |
cond = val | |
reduced = [0] | |
else: | |
reduced = val.ravel() | |
cond = reduced.all() | |
reduced = reduced.tolist() | |
if not cond: | |
match = 100-100.0*reduced.count(1)/len(reduced) | |
msg = build_err_msg([x, y], | |
err_msg | |
+ '\n(mismatch %s%%)' % (match,), | |
verbose=verbose, header=header, | |
names=('x', 'y'), precision=precision) | |
if not cond: | |
> raise AssertionError(msg) | |
E AssertionError: | |
E Not equal to tolerance rtol=1e-08, atol=0 | |
E | |
E (mismatch 100.0%) | |
E x: array(0.2300000025478198) | |
E y: array(0.23) | |
/sw/lib/python2.7/site-packages/numpy/testing/utils.py:708: AssertionError | |
------------------------------- pytest-selenium -------------------------------- | |
_________________________ test_representation_subclass _________________________ | |
def test_representation_subclass(): | |
# Regression test for #3354 | |
from ..builtin_frames import FK5 | |
# Normally when instantiating a frame without a distance the frame will try | |
# and use UnitSphericalRepresentation internally instead of | |
# SphericalRepresentation. | |
frame = FK5(representation=representation.SphericalRepresentation, ra=32 * u.deg, dec=20 * u.deg) | |
assert type(frame._data) == representation.UnitSphericalRepresentation | |
assert frame.representation == representation.SphericalRepresentation | |
# If using a SphericalRepresentation class this used to not work, so we | |
# test here that this is now fixed. | |
> class NewSphericalRepresentation(representation.SphericalRepresentation): | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_frames.py:630: | |
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
cls = <class 'astropy.coordinates.tests.test_frames.NewSphericalRepresentation'> | |
name = 'NewSphericalRepresentation' | |
bases = (<class 'astropy.coordinates.representation.SphericalRepresentation'>,) | |
dct = {'__module__': 'astropy.coordinates.tests.test_frames', 'attr_classes': OrderedDict([(u'lon', <class 'astropy.coordinates.angles.Longitude'>), (u'lat'....angles.Latitude'>), (u'distance', <class 'astropy.units.quantity.Quantity'>)])} | |
def __init__(cls, name, bases, dct): | |
super(MetaBaseRepresentation, cls).__init__(name, bases, dct) | |
if name != 'BaseRepresentation' and 'attr_classes' not in dct: | |
raise NotImplementedError('Representations must have an ' | |
'"attr_classes" class attribute.') | |
# Register representation name (except for BaseRepresentation) | |
if cls.__name__ == 'BaseRepresentation': | |
return | |
repr_name = cls.get_name() | |
if repr_name in REPRESENTATION_CLASSES: | |
> raise ValueError("Representation class {0} already defined".format(repr_name)) | |
E ValueError: Representation class newspherical already defined | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/representation.py:48: ValueError | |
------------------------------- pytest-selenium -------------------------------- | |
__________________________________ test_names __________________________________ | |
@remote_data | |
def test_names(): | |
# First check that sesame is up | |
if urllib.request.urlopen("http://cdsweb.u-strasbg.fr/cgi-bin/nph-sesame").getcode() != 200: | |
pytest.skip("SESAME appears to be down, skipping test_name_resolve.py:test_names()...") | |
with pytest.raises(NameResolveError): | |
get_icrs_coordinates("m87h34hhh") | |
try: | |
icrs = get_icrs_coordinates("ngc 3642") | |
except NameResolveError: | |
ra, dec = _parse_response(_cached_ngc3642["all"]) | |
icrs = SkyCoord(ra=float(ra)*u.degree, dec=float(dec)*u.degree) | |
icrs_true = SkyCoord(ra="11h 22m 18.014s", dec="59d 04m 27.27s") | |
np.testing.assert_almost_equal(icrs.ra.degree, icrs_true.ra.degree, 3) | |
np.testing.assert_almost_equal(icrs.dec.degree, icrs_true.dec.degree, 3) | |
try: | |
icrs = get_icrs_coordinates("castor") | |
except NameResolveError: | |
ra,dec = _parse_response(_cached_castor["all"]) | |
icrs = SkyCoord(ra=float(ra)*u.degree, dec=float(dec)*u.degree) | |
icrs_true = SkyCoord(ra="07h 34m 35.87s", dec="+31d 53m 17.8s") | |
> np.testing.assert_almost_equal(icrs.ra.degree, icrs_true.ra.degree, 3) | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_name_resolve.py:136: | |
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
actual = 113.6566, desired = 113.64945833333331, decimal = 3, err_msg = '' | |
verbose = True | |
def assert_almost_equal(actual,desired,decimal=7,err_msg='',verbose=True): | |
""" | |
Raises an AssertionError if two items are not equal up to desired | |
precision. | |
.. note:: It is recommended to use one of `assert_allclose`, | |
`assert_array_almost_equal_nulp` or `assert_array_max_ulp` | |
instead of this function for more consistent floating point | |
comparisons. | |
The test is equivalent to ``abs(desired-actual) < 0.5 * 10**(-decimal)``. | |
Given two objects (numbers or ndarrays), check that all elements of these | |
objects are almost equal. An exception is raised at conflicting values. | |
For ndarrays this delegates to assert_array_almost_equal | |
Parameters | |
---------- | |
actual : array_like | |
The object to check. | |
desired : array_like | |
The expected object. | |
decimal : int, optional | |
Desired precision, default is 7. | |
err_msg : str, optional | |
The error message to be printed in case of failure. | |
verbose : bool, optional | |
If True, the conflicting values are appended to the error message. | |
Raises | |
------ | |
AssertionError | |
If actual and desired are not equal up to specified precision. | |
See Also | |
-------- | |
assert_allclose: Compare two array_like objects for equality with desired | |
relative and/or absolute precision. | |
assert_array_almost_equal_nulp, assert_array_max_ulp, assert_equal | |
Examples | |
-------- | |
>>> import numpy.testing as npt | |
>>> npt.assert_almost_equal(2.3333333333333, 2.33333334) | |
>>> npt.assert_almost_equal(2.3333333333333, 2.33333334, decimal=10) | |
... | |
<type 'exceptions.AssertionError'>: | |
Items are not equal: | |
ACTUAL: 2.3333333333333002 | |
DESIRED: 2.3333333399999998 | |
>>> npt.assert_almost_equal(np.array([1.0,2.3333333333333]), | |
... np.array([1.0,2.33333334]), decimal=9) | |
... | |
<type 'exceptions.AssertionError'>: | |
Arrays are not almost equal | |
<BLANKLINE> | |
(mismatch 50.0%) | |
x: array([ 1. , 2.33333333]) | |
y: array([ 1. , 2.33333334]) | |
""" | |
from numpy.core import ndarray | |
from numpy.lib import iscomplexobj, real, imag | |
# Handle complex numbers: separate into real/imag to handle | |
# nan/inf/negative zero correctly | |
# XXX: catch ValueError for subclasses of ndarray where iscomplex fail | |
try: | |
usecomplex = iscomplexobj(actual) or iscomplexobj(desired) | |
except ValueError: | |
usecomplex = False | |
def _build_err_msg(): | |
header = ('Arrays are not almost equal to %d decimals' % decimal) | |
return build_err_msg([actual, desired], err_msg, verbose=verbose, | |
header=header) | |
if usecomplex: | |
if iscomplexobj(actual): | |
actualr = real(actual) | |
actuali = imag(actual) | |
else: | |
actualr = actual | |
actuali = 0 | |
if iscomplexobj(desired): | |
desiredr = real(desired) | |
desiredi = imag(desired) | |
else: | |
desiredr = desired | |
desiredi = 0 | |
try: | |
assert_almost_equal(actualr, desiredr, decimal=decimal) | |
assert_almost_equal(actuali, desiredi, decimal=decimal) | |
except AssertionError: | |
raise AssertionError(_build_err_msg()) | |
if isinstance(actual, (ndarray, tuple, list)) \ | |
or isinstance(desired, (ndarray, tuple, list)): | |
return assert_array_almost_equal(actual, desired, decimal, err_msg) | |
try: | |
# If one of desired/actual is not finite, handle it specially here: | |
# check that both are nan if any is a nan, and test for equality | |
# otherwise | |
if not (gisfinite(desired) and gisfinite(actual)): | |
if gisnan(desired) or gisnan(actual): | |
if not (gisnan(desired) and gisnan(actual)): | |
raise AssertionError(_build_err_msg()) | |
else: | |
if not desired == actual: | |
raise AssertionError(_build_err_msg()) | |
return | |
except (NotImplementedError, TypeError): | |
pass | |
if round(abs(desired - actual), decimal) != 0: | |
> raise AssertionError(_build_err_msg()) | |
E AssertionError: | |
E Arrays are not almost equal to 3 decimals | |
E ACTUAL: 113.6566 | |
E DESIRED: 113.64945833333331 | |
/sw/lib/python2.7/site-packages/numpy/testing/utils.py:510: AssertionError | |
------------------------------- pytest-selenium -------------------------------- | |
__________________________________ test_names __________________________________ | |
@remote_data | |
def test_names(): | |
# First check that sesame is up | |
if urllib.request.urlopen("http://cdsweb.u-strasbg.fr/cgi-bin/nph-sesame").getcode() != 200: | |
pytest.skip("SESAME appears to be down, skipping test_name_resolve.py:test_names()...") | |
with pytest.raises(NameResolveError): | |
get_icrs_coordinates("m87h34hhh") | |
try: | |
icrs = get_icrs_coordinates("ngc 3642") | |
except NameResolveError: | |
ra, dec = _parse_response(_cached_ngc3642["all"]) | |
icrs = SkyCoord(ra=float(ra)*u.degree, dec=float(dec)*u.degree) | |
icrs_true = SkyCoord(ra="11h 22m 18.014s", dec="59d 04m 27.27s") | |
np.testing.assert_almost_equal(icrs.ra.degree, icrs_true.ra.degree, 3) | |
np.testing.assert_almost_equal(icrs.dec.degree, icrs_true.dec.degree, 3) | |
try: | |
icrs = get_icrs_coordinates("castor") | |
except NameResolveError: | |
ra,dec = _parse_response(_cached_castor["all"]) | |
icrs = SkyCoord(ra=float(ra)*u.degree, dec=float(dec)*u.degree) | |
icrs_true = SkyCoord(ra="07h 34m 35.87s", dec="+31d 53m 17.8s") | |
> np.testing.assert_almost_equal(icrs.ra.degree, icrs_true.ra.degree, 3) | |
../../../../.local/lib/python2.7/site-packages/astropy/coordinates/tests/test_name_resolve.py:136: | |
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
actual = 113.6566, desired = 113.64945833333331, decimal = 3, err_msg = '' | |
verbose = True | |
def assert_almost_equal(actual,desired,decimal=7,err_msg='',verbose=True): | |
""" | |
Raises an AssertionError if two items are not equal up to desired | |
precision. | |
.. note:: It is recommended to use one of `assert_allclose`, | |
`assert_array_almost_equal_nulp` or `assert_array_max_ulp` | |
instead of this function for more consistent floating point | |
comparisons. | |
The test is equivalent to ``abs(desired-actual) < 0.5 * 10**(-decimal)``. | |
Given two objects (numbers or ndarrays), check that all elements of these | |
objects are almost equal. An exception is raised at conflicting values. | |
For ndarrays this delegates to assert_array_almost_equal | |
Parameters | |
---------- | |
actual : array_like | |
The object to check. | |
desired : array_like | |
The expected object. | |
decimal : int, optional | |
Desired precision, default is 7. | |
err_msg : str, optional | |
The error message to be printed in case of failure. | |
verbose : bool, optional | |
If True, the conflicting values are appended to the error message. | |
Raises | |
------ | |
AssertionError | |
If actual and desired are not equal up to specified precision. | |
See Also | |
-------- | |
assert_allclose: Compare two array_like objects for equality with desired | |
relative and/or absolute precision. | |
assert_array_almost_equal_nulp, assert_array_max_ulp, assert_equal | |
Examples | |
-------- | |
>>> import numpy.testing as npt | |
>>> npt.assert_almost_equal(2.3333333333333, 2.33333334) | |
>>> npt.assert_almost_equal(2.3333333333333, 2.33333334, decimal=10) | |
... | |
<type 'exceptions.AssertionError'>: | |
Items are not equal: | |
ACTUAL: 2.3333333333333002 | |
DESIRED: 2.3333333399999998 | |
>>> npt.assert_almost_equal(np.array([1.0,2.3333333333333]), | |
... np.array([1.0,2.33333334]), decimal=9) | |
... | |
<type 'exceptions.AssertionError'>: | |
Arrays are not almost equal | |
<BLANKLINE> | |
(mismatch 50.0%) | |
x: array([ 1. , 2.33333333]) | |
y: array([ 1. , 2.33333334]) | |
""" | |
from numpy.core import ndarray | |
from numpy.lib import iscomplexobj, real, imag | |
# Handle complex numbers: separate into real/imag to handle | |
# nan/inf/negative zero correctly | |
# XXX: catch ValueError for subclasses of ndarray where iscomplex fail | |
try: | |
usecomplex = iscomplexobj(actual) or iscomplexobj(desired) | |
except ValueError: | |
usecomplex = False | |
def _build_err_msg(): | |
header = ('Arrays are not almost equal to %d decimals' % decimal) | |
return build_err_msg([actual, desired], err_msg, verbose=verbose, | |
header=header) | |
if usecomplex: | |
if iscomplexobj(actual): | |
actualr = real(actual) | |
actuali = imag(actual) | |
else: | |
actualr = actual | |
actuali = 0 | |
if iscomplexobj(desired): | |
desiredr = real(desired) | |
desiredi = imag(desired) | |
else: | |
desiredr = desired | |
desiredi = 0 | |
try: | |
assert_almost_equal(actualr, desiredr, decimal=decimal) | |
assert_almost_equal(actuali, desiredi, decimal=decimal) | |
except AssertionError: | |
raise AssertionError(_build_err_msg()) | |
if isinstance(actual, (ndarray, tuple, list)) \ | |
or isinstance(desired, (ndarray, tuple, list)): | |
return assert_array_almost_equal(actual, desired, decimal, err_msg) | |
try: | |
# If one of desired/actual is not finite, handle it specially here: | |
# check that both are nan if any is a nan, and test for equality | |
# otherwise | |
if not (gisfinite(desired) and gisfinite(actual)): | |
if gisnan(desired) or gisnan(actual): | |
if not (gisnan(desired) and gisnan(actual)): | |
raise AssertionError(_build_err_msg()) | |
else: | |
if not desired == actual: | |
raise AssertionError(_build_err_msg()) | |
return | |
except (NotImplementedError, TypeError): | |
pass | |
if round(abs(desired - actual), decimal) != 0: | |
> raise AssertionError(_build_err_msg()) | |
E AssertionError: | |
E Arrays are not almost equal to 3 decimals | |
E ACTUAL: 113.6566 | |
E DESIRED: 113.64945833333331 | |
/sw/lib/python2.7/site-packages/numpy/testing/utils.py:510: AssertionError | |
------------------------------- pytest-selenium -------------------------------- | |
_______________________ test_inherit_constraints[model0] _______________________ | |
model = <CompoundModel11(amplitude_0=1.0, mean_0=0.0, stddev_0=1.0, amplitude_1=1.0, mean_1=0.0, stddev_1=1.0)> | |
@pytest.mark.parametrize('model', | |
[Gaussian1D(bounds={'stddev': (0, 0.3)}, fixed={'mean': True}) + | |
Gaussian1D(fixed={'mean': True}), | |
(_ConstraintsTestA + _ConstraintsTestB)()]) | |
def test_inherit_constraints(model): | |
""" | |
Various tests for copying of constraint values between compound models and | |
their members. | |
There are two versions of this test: One where a compound model is created | |
from two model instances, and another where a compound model is created | |
from two model classes that have default constraints set on some of their | |
parameters. | |
Regression test for https://github.com/astropy/astropy/issues/3481 | |
""" | |
# Lots of assertions in this test as there are multiple interfaces to | |
# parameter constraints | |
assert 'stddev_0' in model.bounds | |
> assert model.bounds['stddev_0'] == (0, 0.3) | |
E assert (0.1, 0.5) == (0, 0.3) | |
E At index 0 diff: 0.1 != 0 | |
E Use -v to get the full diff | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_compound.py:759: AssertionError | |
------------------------------- pytest-selenium -------------------------------- | |
_______________________ test_inherit_constraints[model1] _______________________ | |
model = <CompoundModel12(stddev_0=0.0, mean_0=0.0, mean_1=0.0)> | |
@pytest.mark.parametrize('model', | |
[Gaussian1D(bounds={'stddev': (0, 0.3)}, fixed={'mean': True}) + | |
Gaussian1D(fixed={'mean': True}), | |
(_ConstraintsTestA + _ConstraintsTestB)()]) | |
def test_inherit_constraints(model): | |
""" | |
Various tests for copying of constraint values between compound models and | |
their members. | |
There are two versions of this test: One where a compound model is created | |
from two model instances, and another where a compound model is created | |
from two model classes that have default constraints set on some of their | |
parameters. | |
Regression test for https://github.com/astropy/astropy/issues/3481 | |
""" | |
# Lots of assertions in this test as there are multiple interfaces to | |
# parameter constraints | |
assert 'stddev_0' in model.bounds | |
> assert model.bounds['stddev_0'] == (0, 0.3) | |
E assert (0.1, 0.5) == (0, 0.3) | |
E At index 0 diff: 0.1 != 0 | |
E Use -v to get the full diff | |
../../../../.local/lib/python2.7/site-packages/astropy/modeling/tests/test_compound.py:759: AssertionError | |
------------------------------- pytest-selenium -------------------------------- | |
__________________________________ test_alias __________________________________ | |
def test_alias(): | |
from ...cosmology import core, WMAP9, WMAP7 | |
# REMOVE in astropy 0.5 | |
with catch_warnings() as w: | |
x = core.DEFAULT_COSMOLOGY() | |
> assert x == WMAP9 | |
E assert FlatLambdaCDM(name="WMAP7", H0=70.4 km / (Mpc s), Om0=0.272, Tcmb0=2.725 K, Neff=3.04, m_nu=[ 0. 0. 0.] eV, Ob0=0.0455) == FlatLambdaCDM(name="WMAP9", H0=69.3 km / (Mpc s), Om0=0.286, Tcmb0=2.725 K, Neff=3.04, m_nu=[ 0. 0. 0.] eV, Ob0=0.0463) | |
../../../../.local/lib/python2.7/site-packages/astropy/utils/tests/test_state.py:16: AssertionError | |
------------------------------- pytest-selenium -------------------------------- | |
7 failed, 9692 passed, 113 skipped, 46 xfailed, 2 xpassed, 2 error in 984.90 seconds |
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