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November 24, 2015 23:05
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| ============================= test session starts ============================== | |
| platform darwin -- Python 3.4.3 -- py-1.4.30 -- pytest-2.7.3 | |
| rootdir: /Users/bsipocz/.local/lib/python3.4/site-packages/astropy, inifile: | |
| Running tests with Astropy version 1.1rc1. | |
| Running tests in /Users/bsipocz/.local/lib/python3.4/site-packages/astropy. | |
| Date: 2015-11-24T22:49:06 | |
| Platform: Darwin-14.5.0-x86_64-i386-64bit | |
| Executable: /sw/bin/python3 | |
| Full Python Version: | |
| 3.4.3 (default, Feb 26 2015, 11:16:38) | |
| [GCC 4.2.1 Compatible Apple LLVM 6.0 (clang-600.0.56)] | |
| encodings: sys: utf-8, locale: UTF-8, filesystem: utf-8 | |
| byteorder: little | |
| float info: dig: 15, mant_dig: 15 | |
| Numpy: 1.10.1 | |
| Scipy: 0.16.0 | |
| Matplotlib: 1.5.0 | |
| h5py: not available | |
| Using Astropy options: remote_data. | |
| collected 7049 items / 2 errors | |
| ../../../../.local/lib/python3.4/site-packages/astropy/_erfa/tests/test_erfa.py ..... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/analytic_functions/tests/test_blackbody.py ..... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/config/tests/test_configs.py ................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/constants/tests/test_constant.py ........ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/constants/tests/test_pickle.py sss | |
| ../../../../.local/lib/python3.4/site-packages/astropy/convolution/tests/test_convolve.py ............................................................................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/convolution/tests/test_convolve_fft.py ................................................................................................................................................................................................................................................................................................................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/convolution/tests/test_convolve_kernels.py .............................................................................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/convolution/tests/test_discretize.py ...s...........s............... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/convolution/tests/test_kernel_class.py ........................................................................................................................................................................................ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/convolution/tests/test_pickle.py .xx.xx.xx | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_angles.py ........................................ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_angular_separation.py .... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_api_ape5.py ..... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_arrays.py ............. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_celestial_transformations.py .......... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_distance.py .F....... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_earth.py ............. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_formatting.py .......... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_frames.py ......................F. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_funcs.py ... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_iau_fullstack.py .................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_intermediate_transformations.py ................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_matching.py ...... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_name_resolve.py F.. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_pickle.py ..sss | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_regression.py ....... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_representation.py ............................................................................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_sites.py ....... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_sky_coord.py ........................................................................................................................................................................................................................................................................................................................................................................................x................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_transformations.py ...... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_unit_representation.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/accuracy/test_altaz_icrs.py ...x | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/accuracy/test_ecliptic.py ... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/accuracy/test_fk4_no_e_fk4.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/accuracy/test_fk4_no_e_fk5.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/accuracy/test_galactic_fk4.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/accuracy/test_icrs_fk5.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/cosmology/tests/test_cosmology.py ..................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/cosmology/tests/test_pickle.py sss | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py .................FF........x.........FF.......x.....FFx.x...............FF | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_cds_header_from_readme.py ... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_compressed.py ....... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_connect.py .............ss........ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_ecsv.py ....... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_fixedwidth.py ............................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_html.py s.ssssss.ssss..s | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_ipac_definitions.py .................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_read.py ...............................................................................................F......... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_types.py .F. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_write.py ............... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/fits/tests/test_checksum.py ..................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/fits/tests/test_connect.py .......................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/fits/tests/test_core.py .................................................ss.......... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/fits/tests/test_diff.py ................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/fits/tests/test_division.py ..... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/fits/tests/test_groups.py ........ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/fits/tests/test_hdulist.py ......................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/fits/tests/test_header.py ................................................................................................................................................ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/fits/tests/test_image.py ...................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/fits/tests/test_nonstandard.py ... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/fits/tests/test_structured.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/fits/tests/test_table.py .................................x..................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/fits/tests/test_uint.py ........ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/fits/tests/test_util.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/misc/tests/test_hdf5.py sssssssssssssssssssssssssssssssssssssssss | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/misc/tests/test_pickle_helpers.py .... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/tests/test_registry.py .............................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/votable/tests/converter_test.py ...................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/votable/tests/exception_test.py .. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/votable/tests/table_test.py ........ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/votable/tests/tree_test.py ... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/votable/tests/ucd_test.py ..... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/votable/tests/util_test.py ........... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/votable/tests/vo_test.py ......................................................................................................................................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_compound.py ..........................................FF........s | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_constraints.py ..................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_core.py ............. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_fitters.py ................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_functional_models.py ........... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_input.py ...................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_mappings.py ...... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_models.py ................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_parameters.py .................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_polynomial.py ............................s......... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_projections.py ....................................................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_rotations.py ............. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_utils.py ... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/nddata/mixins/tests/test_ndarithmetic.py ........................................................ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/nddata/mixins/tests/test_ndio.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/nddata/tests/test_compat.py ................ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/nddata/tests/test_decorators.py .......... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/nddata/tests/test_flag_collection.py .......... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/nddata/tests/test_nddata.py .................................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/nddata/tests/test_nddata_base.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/nddata/tests/test_utils.py ....................s........................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/stats/tests/test_bayesian_blocks.py ....... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/stats/tests/test_funcs.py ................................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/stats/tests/test_histogram.py ......... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/stats/tests/test_sigma_clipping.py ..... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_array.py ... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_bst.py ....... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_column.py ................................................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_groups.py ....................FF........FFFFFFFF | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_index.py ................................................................................................................................................................................................................................................................................................................................................................................................................................................ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_info.py ............ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_init_table.py ................................................................................................................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_item_access.py .............................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_jsviewer.py ... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_masked.py .................................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_mixin.py ..............................................................x.... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_np_utils.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_operations.py ...................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_pickle.py ............... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_pprint.py ........................................................ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_row.py .................................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_subclass.py .. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_table.py ................................................................................................................................................................................................................................................................................................x........................................ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/tests/test_logger.py ............................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/tests/tests/test_imports.py .. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/tests/tests/test_open_file_detection.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/tests/tests/test_quantity_helpers.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/tests/tests/test_run_tests.py .... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/tests/tests/test_skip_remote_data.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/tests/tests/test_socketblocker.py .... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/time/tests/test_basic.py ....................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/time/tests/test_comparisons.py ... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/time/tests/test_delta.py ................................................................................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/time/tests/test_guess.py .... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/time/tests/test_methods.py ..........ss....... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/time/tests/test_pickle.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/time/tests/test_precision.py .......x.. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/time/tests/test_quantity_interaction.py ............... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/time/tests/test_sidereal.py ................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/time/tests/test_ut1.py ...s | |
| ../../../../.local/lib/python3.4/site-packages/astropy/units/tests/test_equivalencies.py ..................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/units/tests/test_format.py ................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/units/tests/test_logarithmic.py .s...ss.s...s................ss............................................................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/units/tests/test_physical.py ........... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/units/tests/test_quantity.py ...................................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/units/tests/test_quantity_array_methods.py .............................x............x.x............. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/units/tests/test_quantity_decorator.py ............................ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/units/tests/test_quantity_non_ufuncs.py xx | |
| ../../../../.local/lib/python3.4/site-packages/astropy/units/tests/test_quantity_ufuncs.py .......................................................................................................................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/units/tests/test_units.py ............................................................................................................................................................................................................................................................................................................................................................................................................................................ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/compat/numpy/tests/test_broadcast_arrays.py .... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/iers/tests/test_iers.py ....s | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_codegen.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_collections.py ..... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_compat.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_console.py .......s................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_data.py .......................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_data_info.py ............. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_decorators.py ........s.. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_gzip.py .. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_introspection.py .... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_metadata.py ............... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_misc.py ..... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_odict.py sssssssssssssssssssssssssssssssssssssssssss | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_state.py F. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_timer.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_xml.py ........ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/visualization/scripts/tests/test_fits2bitmap.py .. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/visualization/tests/test_histogram.py ... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/visualization/tests/test_interval.py ................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/visualization/tests/test_norm.py s...... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/visualization/tests/test_stretch.py ................................................................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/visualization/tests/test_ui.py ...... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/visualization/tests/test_units.py .. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/vo/client/tests/test_conesearch.py .................x. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/vo/client/tests/test_vos_catalog.py ............... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/vo/samp/tests/test_client.py .... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/vo/samp/tests/test_errors.py ... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/vo/samp/tests/test_hub.py .. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/vo/samp/tests/test_hub_proxy.py ..... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/vo/samp/tests/test_hub_script.py . | |
| ../../../../.local/lib/python3.4/site-packages/astropy/vo/samp/tests/test_standard_profile.py ... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/vo/samp/tests/test_web_profile.py .. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/vo/validator/tests/test_inpect.py .... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/vo/validator/tests/test_validate.py .... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/wcs/tests/test_pickle.py ...... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/wcs/tests/test_profiling.py .................................. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/wcs/tests/test_utils.py ......................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/wcs/tests/test_wcs.py .......................................................................... | |
| ../../../../.local/lib/python3.4/site-packages/astropy/wcs/tests/test_wcsprm.py ...........................................................................................................XX.. | |
| ../../../../.local/lib/python3.4/site-packages/astropy/wcs/tests/extension/test_extension.py . | |
| ==================================== ERRORS ==================================== | |
| ________________ ERROR collecting modeling/tests/test_models.py ________________ | |
| _pytest.runner:149: in __init__ | |
| ??? | |
| _pytest.main:437: in _memocollect | |
| ??? | |
| _pytest.main:314: in _memoizedcall | |
| ??? | |
| _pytest.main:437: in <lambda> | |
| ??? | |
| _pytest.python:573: in collect | |
| ??? | |
| _pytest.python:365: in collect | |
| ??? | |
| _pytest.python:377: in makeitem | |
| ??? | |
| _pytest.core:521: in __call__ | |
| ??? | |
| _pytest.core:528: in _docall | |
| ??? | |
| _pytest.core:393: in execute | |
| ??? | |
| _pytest.core:109: in wrapped_call | |
| ??? | |
| _pytest.python:255: in pytest_pycollect_makeitem | |
| ??? | |
| _pytest.python:394: in _genfunctions | |
| ??? | |
| _pytest.core:524: in callextra | |
| ??? | |
| _pytest.core:528: in _docall | |
| ??? | |
| _pytest.core:394: in execute | |
| ??? | |
| _pytest.python:164: in pytest_generate_tests | |
| ??? | |
| _pytest.python:879: in parametrize | |
| ??? | |
| _pytest.python:752: in setmulti | |
| ??? | |
| _pytest.python:735: in _checkargnotcontained | |
| ??? | |
| E ValueError: duplicate 'model_class' | |
| ________________ ERROR collecting modeling/tests/test_models.py ________________ | |
| _pytest.runner:149: in __init__ | |
| ??? | |
| _pytest.main:437: in _memocollect | |
| ??? | |
| _pytest.main:314: in _memoizedcall | |
| ??? | |
| _pytest.main:437: in <lambda> | |
| ??? | |
| _pytest.python:573: in collect | |
| ??? | |
| _pytest.python:365: in collect | |
| ??? | |
| _pytest.python:377: in makeitem | |
| ??? | |
| _pytest.core:521: in __call__ | |
| ??? | |
| _pytest.core:528: in _docall | |
| ??? | |
| _pytest.core:393: in execute | |
| ??? | |
| _pytest.core:109: in wrapped_call | |
| ??? | |
| _pytest.python:255: in pytest_pycollect_makeitem | |
| ??? | |
| _pytest.python:394: in _genfunctions | |
| ??? | |
| _pytest.core:524: in callextra | |
| ??? | |
| _pytest.core:528: in _docall | |
| ??? | |
| _pytest.core:394: in execute | |
| ??? | |
| _pytest.python:164: in pytest_generate_tests | |
| ??? | |
| _pytest.python:879: in parametrize | |
| ??? | |
| _pytest.python:752: in setmulti | |
| ??? | |
| _pytest.python:735: in _checkargnotcontained | |
| ??? | |
| E ValueError: duplicate 'model_class' | |
| =================================== FAILURES =================================== | |
| _____________________________ test_distances_scipy _____________________________ | |
| @pytest.mark.skipif(str('not HAS_SCIPY')) | |
| def test_distances_scipy(): | |
| """ | |
| The distance-related tests that require scipy due to the cosmology | |
| module needing scipy integration routines | |
| """ | |
| from ...cosmology import WMAP5 | |
| #try different ways to initialize a Distance | |
| d4 = Distance(z=0.23) # uses default cosmology - as of writing, WMAP7 | |
| > npt.assert_allclose(d4.z, 0.23, rtol=1e-8) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_distance.py:123: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| /sw/lib/python3.4/site-packages/numpy/testing/utils.py:1347: in assert_allclose | |
| verbose=verbose, header=header) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| comparison = <function assert_allclose.<locals>.compare at 0x1192eff28> | |
| x = array(0.2300000025478198), y = array(0.23), err_msg = '', verbose = True | |
| header = 'Not equal to tolerance rtol=1e-08, atol=0', precision = 6 | |
| def assert_array_compare(comparison, x, y, err_msg='', verbose=True, | |
| header='', precision=6): | |
| from numpy.core import array, isnan, isinf, any, all, inf | |
| x = array(x, copy=False, subok=True) | |
| y = array(y, copy=False, subok=True) | |
| def safe_comparison(*args, **kwargs): | |
| # There are a number of cases where comparing two arrays hits special | |
| # cases in array_richcompare, specifically around strings and void | |
| # dtypes. Basically, we just can't do comparisons involving these | |
| # types, unless both arrays have exactly the *same* type. So | |
| # e.g. you can apply == to two string arrays, or two arrays with | |
| # identical structured dtypes. But if you compare a non-string array | |
| # to a string array, or two arrays with non-identical structured | |
| # dtypes, or anything like that, then internally stuff blows up. | |
| # Currently, when things blow up, we just return a scalar False or | |
| # True. But we also emit a DeprecationWarning, b/c eventually we | |
| # should raise an error here. (Ideally we might even make this work | |
| # properly, but since that will require rewriting a bunch of how | |
| # ufuncs work then we are not counting on that.) | |
| # | |
| # The point of this little function is to let the DeprecationWarning | |
| # pass (or maybe eventually catch the errors and return False, I | |
| # dunno, that's a little trickier and we can figure that out when the | |
| # time comes). | |
| with warnings.catch_warnings(): | |
| warnings.filterwarnings("ignore", category=DeprecationWarning) | |
| return comparison(*args, **kwargs) | |
| def isnumber(x): | |
| return x.dtype.char in '?bhilqpBHILQPefdgFDG' | |
| def chk_same_position(x_id, y_id, hasval='nan'): | |
| """Handling nan/inf: check that x and y have the nan/inf at the same | |
| locations.""" | |
| try: | |
| assert_array_equal(x_id, y_id) | |
| except AssertionError: | |
| msg = build_err_msg([x, y], | |
| err_msg + '\nx and y %s location mismatch:' | |
| % (hasval), verbose=verbose, header=header, | |
| names=('x', 'y'), precision=precision) | |
| raise AssertionError(msg) | |
| try: | |
| cond = (x.shape == () or y.shape == ()) or x.shape == y.shape | |
| if not cond: | |
| msg = build_err_msg([x, y], | |
| err_msg | |
| + '\n(shapes %s, %s mismatch)' % (x.shape, | |
| y.shape), | |
| verbose=verbose, header=header, | |
| names=('x', 'y'), precision=precision) | |
| if not cond: | |
| raise AssertionError(msg) | |
| if isnumber(x) and isnumber(y): | |
| x_isnan, y_isnan = isnan(x), isnan(y) | |
| x_isinf, y_isinf = isinf(x), isinf(y) | |
| # Validate that the special values are in the same place | |
| if any(x_isnan) or any(y_isnan): | |
| chk_same_position(x_isnan, y_isnan, hasval='nan') | |
| if any(x_isinf) or any(y_isinf): | |
| # Check +inf and -inf separately, since they are different | |
| chk_same_position(x == +inf, y == +inf, hasval='+inf') | |
| chk_same_position(x == -inf, y == -inf, hasval='-inf') | |
| # Combine all the special values | |
| x_id, y_id = x_isnan, y_isnan | |
| x_id |= x_isinf | |
| y_id |= y_isinf | |
| # Only do the comparison if actual values are left | |
| if all(x_id): | |
| return | |
| if any(x_id): | |
| val = safe_comparison(x[~x_id], y[~y_id]) | |
| else: | |
| val = safe_comparison(x, y) | |
| else: | |
| val = safe_comparison(x, y) | |
| if isinstance(val, bool): | |
| cond = val | |
| reduced = [0] | |
| else: | |
| reduced = val.ravel() | |
| cond = reduced.all() | |
| reduced = reduced.tolist() | |
| if not cond: | |
| match = 100-100.0*reduced.count(1)/len(reduced) | |
| msg = build_err_msg([x, y], | |
| err_msg | |
| + '\n(mismatch %s%%)' % (match,), | |
| verbose=verbose, header=header, | |
| names=('x', 'y'), precision=precision) | |
| if not cond: | |
| > raise AssertionError(msg) | |
| E AssertionError: | |
| E Not equal to tolerance rtol=1e-08, atol=0 | |
| E | |
| E (mismatch 100.0%) | |
| E x: array(0.2300000025478198) | |
| E y: array(0.23) | |
| /sw/lib/python3.4/site-packages/numpy/testing/utils.py:708: AssertionError | |
| _________________________ test_representation_subclass _________________________ | |
| def test_representation_subclass(): | |
| # Regression test for #3354 | |
| from ..builtin_frames import FK5 | |
| # Normally when instantiating a frame without a distance the frame will try | |
| # and use UnitSphericalRepresentation internally instead of | |
| # SphericalRepresentation. | |
| frame = FK5(representation=representation.SphericalRepresentation, ra=32 * u.deg, dec=20 * u.deg) | |
| assert type(frame._data) == representation.UnitSphericalRepresentation | |
| assert frame.representation == representation.SphericalRepresentation | |
| # If using a SphericalRepresentation class this used to not work, so we | |
| # test here that this is now fixed. | |
| > class NewSphericalRepresentation(representation.SphericalRepresentation): | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_frames.py:630: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| cls = <class 'astropy.coordinates.tests.test_frames.test_representation_subclass.<locals>.NewSphericalRepresentation'> | |
| name = 'NewSphericalRepresentation' | |
| bases = (<class 'astropy.coordinates.representation.SphericalRepresentation'>,) | |
| dct = {'__module__': 'astropy.coordinates.tests.test_frames', '__qualname__': 'test_representation_subclass.<locals>.NewSphe...'>), ('lat', <class 'astropy.coordinates.angles.Latitude'>), ('distance', <class 'astropy.units.quantity.Quantity'>)])} | |
| def __init__(cls, name, bases, dct): | |
| super(MetaBaseRepresentation, cls).__init__(name, bases, dct) | |
| if name != 'BaseRepresentation' and 'attr_classes' not in dct: | |
| raise NotImplementedError('Representations must have an ' | |
| '"attr_classes" class attribute.') | |
| # Register representation name (except for BaseRepresentation) | |
| if cls.__name__ == 'BaseRepresentation': | |
| return | |
| repr_name = cls.get_name() | |
| if repr_name in REPRESENTATION_CLASSES: | |
| > raise ValueError("Representation class {0} already defined".format(repr_name)) | |
| E ValueError: Representation class newspherical already defined | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/representation.py:48: ValueError | |
| __________________________________ test_names __________________________________ | |
| @remote_data | |
| def test_names(): | |
| # First check that sesame is up | |
| if urllib.request.urlopen("http://cdsweb.u-strasbg.fr/cgi-bin/nph-sesame").getcode() != 200: | |
| pytest.skip("SESAME appears to be down, skipping test_name_resolve.py:test_names()...") | |
| with pytest.raises(NameResolveError): | |
| get_icrs_coordinates("m87h34hhh") | |
| try: | |
| icrs = get_icrs_coordinates("ngc 3642") | |
| except NameResolveError: | |
| ra, dec = _parse_response(_cached_ngc3642["all"]) | |
| icrs = SkyCoord(ra=float(ra)*u.degree, dec=float(dec)*u.degree) | |
| icrs_true = SkyCoord(ra="11h 22m 18.014s", dec="59d 04m 27.27s") | |
| np.testing.assert_almost_equal(icrs.ra.degree, icrs_true.ra.degree, 3) | |
| np.testing.assert_almost_equal(icrs.dec.degree, icrs_true.dec.degree, 3) | |
| try: | |
| icrs = get_icrs_coordinates("castor") | |
| except NameResolveError: | |
| ra,dec = _parse_response(_cached_castor["all"]) | |
| icrs = SkyCoord(ra=float(ra)*u.degree, dec=float(dec)*u.degree) | |
| icrs_true = SkyCoord(ra="07h 34m 35.87s", dec="+31d 53m 17.8s") | |
| > np.testing.assert_almost_equal(icrs.ra.degree, icrs_true.ra.degree, 3) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/coordinates/tests/test_name_resolve.py:136: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| actual = 113.6566, desired = 113.64945833333331, decimal = 3, err_msg = '' | |
| verbose = True | |
| def assert_almost_equal(actual,desired,decimal=7,err_msg='',verbose=True): | |
| """ | |
| Raises an AssertionError if two items are not equal up to desired | |
| precision. | |
| .. note:: It is recommended to use one of `assert_allclose`, | |
| `assert_array_almost_equal_nulp` or `assert_array_max_ulp` | |
| instead of this function for more consistent floating point | |
| comparisons. | |
| The test is equivalent to ``abs(desired-actual) < 0.5 * 10**(-decimal)``. | |
| Given two objects (numbers or ndarrays), check that all elements of these | |
| objects are almost equal. An exception is raised at conflicting values. | |
| For ndarrays this delegates to assert_array_almost_equal | |
| Parameters | |
| ---------- | |
| actual : array_like | |
| The object to check. | |
| desired : array_like | |
| The expected object. | |
| decimal : int, optional | |
| Desired precision, default is 7. | |
| err_msg : str, optional | |
| The error message to be printed in case of failure. | |
| verbose : bool, optional | |
| If True, the conflicting values are appended to the error message. | |
| Raises | |
| ------ | |
| AssertionError | |
| If actual and desired are not equal up to specified precision. | |
| See Also | |
| -------- | |
| assert_allclose: Compare two array_like objects for equality with desired | |
| relative and/or absolute precision. | |
| assert_array_almost_equal_nulp, assert_array_max_ulp, assert_equal | |
| Examples | |
| -------- | |
| >>> import numpy.testing as npt | |
| >>> npt.assert_almost_equal(2.3333333333333, 2.33333334) | |
| >>> npt.assert_almost_equal(2.3333333333333, 2.33333334, decimal=10) | |
| ... | |
| <type 'exceptions.AssertionError'>: | |
| Items are not equal: | |
| ACTUAL: 2.3333333333333002 | |
| DESIRED: 2.3333333399999998 | |
| >>> npt.assert_almost_equal(np.array([1.0,2.3333333333333]), | |
| ... np.array([1.0,2.33333334]), decimal=9) | |
| ... | |
| <type 'exceptions.AssertionError'>: | |
| Arrays are not almost equal | |
| <BLANKLINE> | |
| (mismatch 50.0%) | |
| x: array([ 1. , 2.33333333]) | |
| y: array([ 1. , 2.33333334]) | |
| """ | |
| from numpy.core import ndarray | |
| from numpy.lib import iscomplexobj, real, imag | |
| # Handle complex numbers: separate into real/imag to handle | |
| # nan/inf/negative zero correctly | |
| # XXX: catch ValueError for subclasses of ndarray where iscomplex fail | |
| try: | |
| usecomplex = iscomplexobj(actual) or iscomplexobj(desired) | |
| except ValueError: | |
| usecomplex = False | |
| def _build_err_msg(): | |
| header = ('Arrays are not almost equal to %d decimals' % decimal) | |
| return build_err_msg([actual, desired], err_msg, verbose=verbose, | |
| header=header) | |
| if usecomplex: | |
| if iscomplexobj(actual): | |
| actualr = real(actual) | |
| actuali = imag(actual) | |
| else: | |
| actualr = actual | |
| actuali = 0 | |
| if iscomplexobj(desired): | |
| desiredr = real(desired) | |
| desiredi = imag(desired) | |
| else: | |
| desiredr = desired | |
| desiredi = 0 | |
| try: | |
| assert_almost_equal(actualr, desiredr, decimal=decimal) | |
| assert_almost_equal(actuali, desiredi, decimal=decimal) | |
| except AssertionError: | |
| raise AssertionError(_build_err_msg()) | |
| if isinstance(actual, (ndarray, tuple, list)) \ | |
| or isinstance(desired, (ndarray, tuple, list)): | |
| return assert_array_almost_equal(actual, desired, decimal, err_msg) | |
| try: | |
| # If one of desired/actual is not finite, handle it specially here: | |
| # check that both are nan if any is a nan, and test for equality | |
| # otherwise | |
| if not (gisfinite(desired) and gisfinite(actual)): | |
| if gisnan(desired) or gisnan(actual): | |
| if not (gisnan(desired) and gisnan(actual)): | |
| raise AssertionError(_build_err_msg()) | |
| else: | |
| if not desired == actual: | |
| raise AssertionError(_build_err_msg()) | |
| return | |
| except (NotImplementedError, TypeError): | |
| pass | |
| if round(abs(desired - actual), decimal) != 0: | |
| > raise AssertionError(_build_err_msg()) | |
| E AssertionError: | |
| E Arrays are not almost equal to 3 decimals | |
| E ACTUAL: 113.6566 | |
| E DESIRED: 113.64945833333331 | |
| /sw/lib/python3.4/site-packages/numpy/testing/utils.py:510: AssertionError | |
| ____________________________ test_conversion[True] _____________________________ | |
| parallel = True | |
| read_basic = functools.partial(<function _read at 0x11551eae8>, local('/private/var/folders/dc/hsm7tqpx2d57n7vb3k1l81xw0000gq/T/pytest-bsipocz/pytest-2/test_conversion_True_0'), Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>, format='basic') | |
| @pytest.mark.parametrize("parallel", [True, False]) | |
| def test_conversion(parallel, read_basic): | |
| """ | |
| The reader should try to convert each column to ints. If this fails, the | |
| reader should try to convert to floats. Failing this, it should fall back | |
| to strings. | |
| """ | |
| text = """ | |
| A B C D E | |
| 1 a 3 4 5 | |
| 2. 1 9 10 -5.3e4 | |
| 4 2 -12 .4 six | |
| """ | |
| > table = read_basic(text, parallel=parallel) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:248: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:66: in _read | |
| assert_table_equal(t4, t5, check_meta=check_meta) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:35: in assert_table_equal | |
| assert_equal(t1[name].dtype.kind, t2[name].dtype.kind) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| a = 'U', b = 'f' | |
| def assert_equal(a, b): | |
| > assert a == b | |
| E assert 'U' == 'f' | |
| E - U | |
| E + f | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/common.py:41: AssertionError | |
| ____________________________ test_conversion[False] ____________________________ | |
| parallel = False | |
| read_basic = functools.partial(<function _read at 0x11551eae8>, local('/private/var/folders/dc/hsm7tqpx2d57n7vb3k1l81xw0000gq/T/pytest-bsipocz/pytest-2/test_conversion_False_0'), Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>, format='basic') | |
| @pytest.mark.parametrize("parallel", [True, False]) | |
| def test_conversion(parallel, read_basic): | |
| """ | |
| The reader should try to convert each column to ints. If this fails, the | |
| reader should try to convert to floats. Failing this, it should fall back | |
| to strings. | |
| """ | |
| text = """ | |
| A B C D E | |
| 1 a 3 4 5 | |
| 2. 1 9 10 -5.3e4 | |
| 4 2 -12 .4 six | |
| """ | |
| > table = read_basic(text, parallel=parallel) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:248: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:66: in _read | |
| assert_table_equal(t4, t5, check_meta=check_meta) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:35: in assert_table_equal | |
| assert_equal(t1[name].dtype.kind, t2[name].dtype.kind) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| a = 'U', b = 'f' | |
| def assert_equal(a, b): | |
| > assert a == b | |
| E assert 'U' == 'f' | |
| E - U | |
| E + f | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/common.py:41: AssertionError | |
| ____________________________ test_fill_values[True] ____________________________ | |
| parallel = True | |
| read_basic = functools.partial(<function _read at 0x11551eae8>, local('/private/var/folders/dc/hsm7tqpx2d57n7vb3k1l81xw0000gq/T/pytest-bsipocz/pytest-2/test_fill_values_True_0'), Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>, format='basic') | |
| @pytest.mark.parametrize("parallel", [True, False]) | |
| def test_fill_values(parallel, read_basic): | |
| """ | |
| Make sure that the parameter fill_values works as intended. If fill_values | |
| is not specified, the default behavior should be to convert '' to 0. | |
| """ | |
| text = """ | |
| A, B, C | |
| , 2, nan | |
| a, -999, -3.4 | |
| nan, 5, -9999 | |
| 8, nan, 7.6e12 | |
| """ | |
| > table = read_basic(text, delimiter=',', parallel=parallel) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:487: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:66: in _read | |
| assert_table_equal(t4, t5, check_meta=check_meta) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:35: in assert_table_equal | |
| assert_equal(t1[name].dtype.kind, t2[name].dtype.kind) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| a = 'U', b = 'f' | |
| def assert_equal(a, b): | |
| > assert a == b | |
| E assert 'U' == 'f' | |
| E - U | |
| E + f | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/common.py:41: AssertionError | |
| ___________________________ test_fill_values[False] ____________________________ | |
| parallel = False | |
| read_basic = functools.partial(<function _read at 0x11551eae8>, local('/private/var/folders/dc/hsm7tqpx2d57n7vb3k1l81xw0000gq/T/pytest-bsipocz/pytest-2/test_fill_values_False_0'), Reader=<class 'astropy.io.ascii.fastbasic.FastBasic'>, format='basic') | |
| @pytest.mark.parametrize("parallel", [True, False]) | |
| def test_fill_values(parallel, read_basic): | |
| """ | |
| Make sure that the parameter fill_values works as intended. If fill_values | |
| is not specified, the default behavior should be to convert '' to 0. | |
| """ | |
| text = """ | |
| A, B, C | |
| , 2, nan | |
| a, -999, -3.4 | |
| nan, 5, -9999 | |
| 8, nan, 7.6e12 | |
| """ | |
| > table = read_basic(text, delimiter=',', parallel=parallel) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:487: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:66: in _read | |
| assert_table_equal(t4, t5, check_meta=check_meta) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:35: in assert_table_equal | |
| assert_equal(t1[name].dtype.kind, t2[name].dtype.kind) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| a = 'U', b = 'f' | |
| def assert_equal(a, b): | |
| > assert a == b | |
| E assert 'U' == 'f' | |
| E - U | |
| E + f | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/common.py:41: AssertionError | |
| ________________________________ test_rdb[True] ________________________________ | |
| parallel = True | |
| read_rdb = functools.partial(<function _read at 0x11551eae8>, local('/private/var/folders/dc/hsm7tqpx2d57n7vb3k1l81xw0000gq/T/pytest-bsipocz/pytest-2/test_rdb_True_0'), Reader=<class 'astropy.io.ascii.fastbasic.FastRdb'>, format='rdb') | |
| @pytest.mark.parametrize("parallel", [True, False]) | |
| def test_rdb(parallel, read_rdb): | |
| """ | |
| Make sure the FastRdb reader works as expected. | |
| """ | |
| text = """ | |
| A\tB\tC | |
| 1n\tS\t4N | |
| 1\t 9\t4.3 | |
| """ | |
| > table = read_rdb(text, parallel=parallel) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:682: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:58: in _read | |
| t1 = reader.read(table) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/fastbasic.py:108: in read | |
| data, comments = self.engine.read(try_int, try_float, try_string) | |
| astropy/io/ascii/cparser.pyx:382: in astropy.io.ascii.cparser.CParser.read (astropy/io/ascii/cparser.c:6571) | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| > ??? | |
| E ValueError: Column C failed to convert | |
| astropy/io/ascii/cparser.pyx:572: ValueError | |
| _______________________________ test_rdb[False] ________________________________ | |
| parallel = False | |
| read_rdb = functools.partial(<function _read at 0x11551eae8>, local('/private/var/folders/dc/hsm7tqpx2d57n7vb3k1l81xw0000gq/T/pytest-bsipocz/pytest-2/test_rdb_False_0'), Reader=<class 'astropy.io.ascii.fastbasic.FastRdb'>, format='rdb') | |
| @pytest.mark.parametrize("parallel", [True, False]) | |
| def test_rdb(parallel, read_rdb): | |
| """ | |
| Make sure the FastRdb reader works as expected. | |
| """ | |
| text = """ | |
| A\tB\tC | |
| 1n\tS\t4N | |
| 1\t 9\t4.3 | |
| """ | |
| > table = read_rdb(text, parallel=parallel) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:682: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:58: in _read | |
| t1 = reader.read(table) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/fastbasic.py:108: in read | |
| data, comments = self.engine.read(try_int, try_float, try_string) | |
| astropy/io/ascii/cparser.pyx:382: in astropy.io.ascii.cparser.CParser.read (astropy/io/ascii/cparser.c:6571) | |
| ??? | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| > ??? | |
| E ValueError: Column C failed to convert | |
| astropy/io/ascii/cparser.pyx:572: ValueError | |
| ________________________ test_fast_tab_with_names[True] ________________________ | |
| parallel = True | |
| read_tab = functools.partial(<function _read at 0x11551eae8>, local('/private/var/folders/dc/hsm7tqpx2d57n7vb3k1l81xw0000gq/T/pytest-bsipocz/pytest-2/test_fast_tab_with_names_True_0'), Reader=<class 'astropy.io.ascii.fastbasic.FastTab'>, format='tab') | |
| @pytest.mark.parametrize("parallel", [True, False]) | |
| def test_fast_tab_with_names(parallel, read_tab): | |
| """ | |
| Make sure the C reader doesn't segfault when the header for the | |
| first column is missing [#3545] | |
| """ | |
| content = """# | |
| \tdecDeg\tRate_pn_offAxis\tRate_mos2_offAxis\tObsID\tSourceID\tRADeg\tversion\tCounts_pn\tRate_pn\trun\tRate_mos1\tRate_mos2\tInserted_pn\tInserted_mos2\tbeta\tRate_mos1_offAxis\trcArcsec\tname\tInserted\tCounts_mos1\tInserted_mos1\tCounts_mos2\ty\tx\tCounts\toffAxis\tRot | |
| -3.007559\t0.0000\t0.0010\t0013140201\t0\t213.462574\t0\t2\t0.0002\t0\t0.0001\t0.0001\t0\t1\t0.66\t0.0217\t3.0\tfakeXMMXCS J1413.8-0300\t3\t1\t2\t1\t398.000\t127.000\t5\t13.9\t72.3\t""" | |
| head = ['A{0}'.format(i) for i in range(28)] | |
| table = read_tab(content, data_start=1, | |
| > parallel=parallel, names=head) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:890: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:66: in _read | |
| assert_table_equal(t4, t5, check_meta=check_meta) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:35: in assert_table_equal | |
| assert_equal(t1[name].dtype.kind, t2[name].dtype.kind) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| a = 'U', b = 'f' | |
| def assert_equal(a, b): | |
| > assert a == b | |
| E assert 'U' == 'f' | |
| E - U | |
| E + f | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/common.py:41: AssertionError | |
| _______________________ test_fast_tab_with_names[False] ________________________ | |
| parallel = False | |
| read_tab = functools.partial(<function _read at 0x11551eae8>, local('/private/var/folders/dc/hsm7tqpx2d57n7vb3k1l81xw0000gq/T/pytest-bsipocz/pytest-2/test_fast_tab_with_names_False0'), Reader=<class 'astropy.io.ascii.fastbasic.FastTab'>, format='tab') | |
| @pytest.mark.parametrize("parallel", [True, False]) | |
| def test_fast_tab_with_names(parallel, read_tab): | |
| """ | |
| Make sure the C reader doesn't segfault when the header for the | |
| first column is missing [#3545] | |
| """ | |
| content = """# | |
| \tdecDeg\tRate_pn_offAxis\tRate_mos2_offAxis\tObsID\tSourceID\tRADeg\tversion\tCounts_pn\tRate_pn\trun\tRate_mos1\tRate_mos2\tInserted_pn\tInserted_mos2\tbeta\tRate_mos1_offAxis\trcArcsec\tname\tInserted\tCounts_mos1\tInserted_mos1\tCounts_mos2\ty\tx\tCounts\toffAxis\tRot | |
| -3.007559\t0.0000\t0.0010\t0013140201\t0\t213.462574\t0\t2\t0.0002\t0\t0.0001\t0.0001\t0\t1\t0.66\t0.0217\t3.0\tfakeXMMXCS J1413.8-0300\t3\t1\t2\t1\t398.000\t127.000\t5\t13.9\t72.3\t""" | |
| head = ['A{0}'.format(i) for i in range(28)] | |
| table = read_tab(content, data_start=1, | |
| > parallel=parallel, names=head) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:890: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:66: in _read | |
| assert_table_equal(t4, t5, check_meta=check_meta) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/test_c_reader.py:35: in assert_table_equal | |
| assert_equal(t1[name].dtype.kind, t2[name].dtype.kind) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| a = 'U', b = 'f' | |
| def assert_equal(a, b): | |
| > assert a == b | |
| E assert 'U' == 'f' | |
| E - U | |
| E + f | |
| ../../../../.local/lib/python3.4/site-packages/astropy/io/ascii/tests/common.py:41: AssertionError | |
| ____________________________ test_pformat_roundtrip ____________________________ | |
| def test_pformat_roundtrip(): | |
| """Check that the screen output of ``print tab`` can be read. See #3025.""" | |
| """Read a table with empty values and ensure that corresponding entries are masked""" | |
| table = '\n'.join(['a,b,c,d', | |
| '1,3,1.11,1', | |
| '2, 2, 4.0 , ss ']) | |
| dat = ascii.read(table) | |
| out = ascii.read(dat.pformat()) | |
| assert len(dat) == len(out) | |
| assert dat.colnames == out.colnames | |
| for c in dat.colnames: | |
| > assert np.all(dat[c] == out[c]) | |
| E assert <function all at 0x10fdc8510>(<Column name=...h=2>\n1.11\n 4.0 == <Column name='...h=2>\n1.11\n 4.0 | |
| E + where <function all at 0x10fdc8510> = np.all | |
| E Use -v to get the full diff) | |
| test_read.py:926: AssertionError | |
| _____________________________ test_rdb_write_types _____________________________ | |
| def test_rdb_write_types(): | |
| dat = ascii.read(['a b c d', '1 1.0 cat 2.1'], | |
| Reader=ascii.Basic) | |
| out = StringIO() | |
| ascii.write(dat, out, Writer=ascii.Rdb) | |
| outs = out.getvalue().splitlines() | |
| > assert_equal(outs[1], 'N\tN\tS\tN') | |
| test_types.py:39: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| a = 'N\tS\tS\tS', b = 'N\tN\tS\tN' | |
| def assert_equal(a, b): | |
| > assert a == b | |
| E assert 'N\tS\tS\tS' == 'N\tN\tS\tN' | |
| E - N S S S | |
| E + N N S N | |
| common.py:41: AssertionError | |
| _______________________ test_inherit_constraints[model0] _______________________ | |
| model = <CompoundModel11(amplitude_0=1.0, mean_0=0.0, stddev_0=1.0, amplitude_1=1.0, mean_1=0.0, stddev_1=1.0)> | |
| @pytest.mark.parametrize('model', | |
| [Gaussian1D(bounds={'stddev': (0, 0.3)}, fixed={'mean': True}) + | |
| Gaussian1D(fixed={'mean': True}), | |
| (_ConstraintsTestA + _ConstraintsTestB)()]) | |
| def test_inherit_constraints(model): | |
| """ | |
| Various tests for copying of constraint values between compound models and | |
| their members. | |
| There are two versions of this test: One where a compound model is created | |
| from two model instances, and another where a compound model is created | |
| from two model classes that have default constraints set on some of their | |
| parameters. | |
| Regression test for https://github.com/astropy/astropy/issues/3481 | |
| """ | |
| # Lots of assertions in this test as there are multiple interfaces to | |
| # parameter constraints | |
| assert 'stddev_0' in model.bounds | |
| > assert model.bounds['stddev_0'] == (0, 0.3) | |
| E assert (0.1, 0.5) == (0, 0.3) | |
| E At index 0 diff: 0.1 != 0 | |
| E Use -v to get the full diff | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_compound.py:759: AssertionError | |
| _______________________ test_inherit_constraints[model1] _______________________ | |
| model = <CompoundModel12(stddev_0=0.0, mean_0=0.0, mean_1=0.0)> | |
| @pytest.mark.parametrize('model', | |
| [Gaussian1D(bounds={'stddev': (0, 0.3)}, fixed={'mean': True}) + | |
| Gaussian1D(fixed={'mean': True}), | |
| (_ConstraintsTestA + _ConstraintsTestB)()]) | |
| def test_inherit_constraints(model): | |
| """ | |
| Various tests for copying of constraint values between compound models and | |
| their members. | |
| There are two versions of this test: One where a compound model is created | |
| from two model instances, and another where a compound model is created | |
| from two model classes that have default constraints set on some of their | |
| parameters. | |
| Regression test for https://github.com/astropy/astropy/issues/3481 | |
| """ | |
| # Lots of assertions in this test as there are multiple interfaces to | |
| # parameter constraints | |
| assert 'stddev_0' in model.bounds | |
| > assert model.bounds['stddev_0'] == (0, 0.3) | |
| E assert (0.1, 0.5) == (0, 0.3) | |
| E At index 0 diff: 0.1 != 0 | |
| E Use -v to get the full diff | |
| ../../../../.local/lib/python3.4/site-packages/astropy/modeling/tests/test_compound.py:759: AssertionError | |
| _______________________ test_grouped_item_access[False] ________________________ | |
| T1 = <Table length=8> | |
| a b c d | |
| int64 str1 str3 int64 | |
| ----- ---- ---- ----- | |
| 2 c 7.0 0 | |
| 2 b 5...6.0 2 | |
| 2 a 4.0 3 | |
| 0 a 0.0 4 | |
| 1 b 3.0 5 | |
| 1 a 2.0 6 | |
| 1 a 1.0 7 | |
| def test_grouped_item_access(T1): | |
| """ | |
| Test that column slicing preserves grouping | |
| """ | |
| for masked in (False, True): | |
| t1 = Table(T1, masked=masked) | |
| # Regular slice of a table | |
| tg = t1.group_by('a') | |
| tgs = tg['a', 'c', 'd'] | |
| assert np.all(tgs.groups.keys == tg.groups.keys) | |
| assert np.all(tgs.groups.indices == tg.groups.indices) | |
| tgsa = tgs.groups.aggregate(np.sum) | |
| > assert tgsa.pformat() == [' a c d ', | |
| '--- ---- ---', | |
| ' 0 0.0 4', | |
| ' 1 6.0 18', | |
| ' 2 22.0 6'] | |
| E assert [' a d ', '...8', ' 2 6'] == [' a c d ... 2 22.0 6'] | |
| E At index 0 diff: ' a d ' != ' a c d ' | |
| E Use -v to get the full diff | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_groups.py:241: AssertionError | |
| ________________________ test_grouped_item_access[True] ________________________ | |
| T1 = <Table length=8> | |
| a b c d | |
| int64 str1 str3 int64 | |
| ----- ---- ---- ----- | |
| 2 c 7.0 0 | |
| 2 b 5...6.0 2 | |
| 2 a 4.0 3 | |
| 0 a 0.0 4 | |
| 1 b 3.0 5 | |
| 1 a 2.0 6 | |
| 1 a 1.0 7 | |
| def test_grouped_item_access(T1): | |
| """ | |
| Test that column slicing preserves grouping | |
| """ | |
| for masked in (False, True): | |
| t1 = Table(T1, masked=masked) | |
| # Regular slice of a table | |
| tg = t1.group_by('a') | |
| tgs = tg['a', 'c', 'd'] | |
| assert np.all(tgs.groups.keys == tg.groups.keys) | |
| assert np.all(tgs.groups.indices == tg.groups.indices) | |
| tgsa = tgs.groups.aggregate(np.sum) | |
| > assert tgsa.pformat() == [' a c d ', | |
| '--- ---- ---', | |
| ' 0 0.0 4', | |
| ' 1 6.0 18', | |
| ' 2 22.0 6'] | |
| E assert [' a d ', '...8', ' 2 6'] == [' a c d ... 2 22.0 6'] | |
| E At index 0 diff: ' a d ' != ' a c d ' | |
| E Use -v to get the full diff | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_groups.py:241: AssertionError | |
| _________________________ test_table_aggregate[False] __________________________ | |
| T1 = <Table length=8> | |
| a b c d | |
| int64 str1 str3 int64 | |
| ----- ---- ---- ----- | |
| 2 c 7.0 0 | |
| 2 b 5...6.0 2 | |
| 2 a 4.0 3 | |
| 0 a 0.0 4 | |
| 1 b 3.0 5 | |
| 1 a 2.0 6 | |
| 1 a 1.0 7 | |
| def test_table_aggregate(T1): | |
| """ | |
| Aggregate a table | |
| """ | |
| # Table with only summable cols | |
| t1 = T1['a', 'c', 'd'] | |
| tg = t1.group_by('a') | |
| tga = tg.groups.aggregate(np.sum) | |
| > assert tga.pformat() == [' a c d ', | |
| '--- ---- ---', | |
| ' 0 0.0 4', | |
| ' 1 6.0 18', | |
| ' 2 22.0 6'] | |
| E assert [' a d ', '...8', ' 2 6'] == [' a c d ... 2 22.0 6'] | |
| E At index 0 diff: ' a d ' != ' a c d ' | |
| E Use -v to get the full diff | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_groups.py:389: AssertionError | |
| __________________________ test_table_aggregate[True] __________________________ | |
| T1 = <Table length=8> | |
| a b c d | |
| int64 str1 str3 int64 | |
| ----- ---- ---- ----- | |
| 2 c 7.0 0 | |
| 2 b 5...6.0 2 | |
| 2 a 4.0 3 | |
| 0 a 0.0 4 | |
| 1 b 3.0 5 | |
| 1 a 2.0 6 | |
| 1 a 1.0 7 | |
| def test_table_aggregate(T1): | |
| """ | |
| Aggregate a table | |
| """ | |
| # Table with only summable cols | |
| t1 = T1['a', 'c', 'd'] | |
| tg = t1.group_by('a') | |
| tga = tg.groups.aggregate(np.sum) | |
| > assert tga.pformat() == [' a c d ', | |
| '--- ---- ---', | |
| ' 0 0.0 4', | |
| ' 1 6.0 18', | |
| ' 2 22.0 6'] | |
| E assert [' a d ', '...8', ' 2 6'] == [' a c d ... 2 22.0 6'] | |
| E At index 0 diff: ' a d ' != ' a c d ' | |
| E Use -v to get the full diff | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_groups.py:389: AssertionError | |
| _____________________ test_table_aggregate_reduceat[False] _____________________ | |
| T1 = <Table length=8> | |
| a b c d | |
| int64 str1 str3 int64 | |
| ----- ---- ---- ----- | |
| 2 c 7.0 0 | |
| 2 b 5...6.0 2 | |
| 2 a 4.0 3 | |
| 0 a 0.0 4 | |
| 1 b 3.0 5 | |
| 1 a 2.0 6 | |
| 1 a 1.0 7 | |
| def test_table_aggregate_reduceat(T1): | |
| """ | |
| Aggregate table with functions which have a reduceat method | |
| """ | |
| # Comparison functions without reduceat | |
| def np_mean(x): | |
| return np.mean(x) | |
| def np_sum(x): | |
| return np.sum(x) | |
| def np_add(x): | |
| return np.add(x) | |
| # Table with only summable cols | |
| t1 = T1['a', 'c', 'd'] | |
| tg = t1.group_by('a') | |
| # Comparison | |
| tga_r = tg.groups.aggregate(np.sum) | |
| tga_a = tg.groups.aggregate(np.add) | |
| tga_n = tg.groups.aggregate(np_sum) | |
| assert np.all(tga_r == tga_n) | |
| assert np.all(tga_a == tga_n) | |
| > assert tga_n.pformat() == [' a c d ', | |
| '--- ---- ---', | |
| ' 0 0.0 4', | |
| ' 1 6.0 18', | |
| ' 2 22.0 6'] | |
| E assert [' a d ', '...8', ' 2 6'] == [' a c d ... 2 22.0 6'] | |
| E At index 0 diff: ' a d ' != ' a c d ' | |
| E Use -v to get the full diff | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_groups.py:471: AssertionError | |
| _____________________ test_table_aggregate_reduceat[True] ______________________ | |
| T1 = <Table length=8> | |
| a b c d | |
| int64 str1 str3 int64 | |
| ----- ---- ---- ----- | |
| 2 c 7.0 0 | |
| 2 b 5...6.0 2 | |
| 2 a 4.0 3 | |
| 0 a 0.0 4 | |
| 1 b 3.0 5 | |
| 1 a 2.0 6 | |
| 1 a 1.0 7 | |
| def test_table_aggregate_reduceat(T1): | |
| """ | |
| Aggregate table with functions which have a reduceat method | |
| """ | |
| # Comparison functions without reduceat | |
| def np_mean(x): | |
| return np.mean(x) | |
| def np_sum(x): | |
| return np.sum(x) | |
| def np_add(x): | |
| return np.add(x) | |
| # Table with only summable cols | |
| t1 = T1['a', 'c', 'd'] | |
| tg = t1.group_by('a') | |
| # Comparison | |
| tga_r = tg.groups.aggregate(np.sum) | |
| tga_a = tg.groups.aggregate(np.add) | |
| tga_n = tg.groups.aggregate(np_sum) | |
| assert np.all(tga_r == tga_n) | |
| assert np.all(tga_a == tga_n) | |
| > assert tga_n.pformat() == [' a c d ', | |
| '--- ---- ---', | |
| ' 0 0.0 4', | |
| ' 1 6.0 18', | |
| ' 2 22.0 6'] | |
| E assert [' a d ', '...8', ' 2 6'] == [' a c d ... 2 22.0 6'] | |
| E At index 0 diff: ' a d ' != ' a c d ' | |
| E Use -v to get the full diff | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_groups.py:471: AssertionError | |
| _________________________ test_column_aggregate[False] _________________________ | |
| T1 = <Table length=8> | |
| a b c d | |
| int64 str1 str3 int64 | |
| ----- ---- ---- ----- | |
| 2 c 7.0 0 | |
| 2 b 5...6.0 2 | |
| 2 a 4.0 3 | |
| 0 a 0.0 4 | |
| 1 b 3.0 5 | |
| 1 a 2.0 6 | |
| 1 a 1.0 7 | |
| def test_column_aggregate(T1): | |
| """ | |
| Aggregate a single table column | |
| """ | |
| for masked in (False, True): | |
| tg = Table(T1, masked=masked).group_by('a') | |
| > tga = tg['c'].groups.aggregate(np.sum) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_groups.py:507: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <ColumnGroups indices=[0 1 4 8]>, func = <ufunc 'add'> | |
| def aggregate(self, func): | |
| from .column import MaskedColumn | |
| i0s, i1s = self.indices[:-1], self.indices[1:] | |
| par_col = self.parent_column | |
| masked = isinstance(par_col, MaskedColumn) | |
| reduceat = hasattr(func, 'reduceat') | |
| sum_case = func is np.sum | |
| mean_case = func is np.mean | |
| try: | |
| if not masked and (reduceat or sum_case or mean_case): | |
| if mean_case: | |
| vals = np.add.reduceat(par_col, i0s) / np.diff(self.indices) | |
| else: | |
| if sum_case: | |
| func = np.add | |
| vals = func.reduceat(par_col, i0s) | |
| else: | |
| vals = np.array([func(par_col[i0: i1]) for i0, i1 in izip(i0s, i1s)]) | |
| except Exception: | |
| raise TypeError("Cannot aggregate column '{0}' with type '{1}'" | |
| .format(par_col.info.name, | |
| > par_col.info.dtype)) | |
| E TypeError: Cannot aggregate column 'c' with type '<U3' | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/groups.py:262: TypeError | |
| _________________________ test_column_aggregate[True] __________________________ | |
| T1 = <Table length=8> | |
| a b c d | |
| int64 str1 str3 int64 | |
| ----- ---- ---- ----- | |
| 2 c 7.0 0 | |
| 2 b 5...6.0 2 | |
| 2 a 4.0 3 | |
| 0 a 0.0 4 | |
| 1 b 3.0 5 | |
| 1 a 2.0 6 | |
| 1 a 1.0 7 | |
| def test_column_aggregate(T1): | |
| """ | |
| Aggregate a single table column | |
| """ | |
| for masked in (False, True): | |
| tg = Table(T1, masked=masked).group_by('a') | |
| > tga = tg['c'].groups.aggregate(np.sum) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_groups.py:507: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| self = <ColumnGroups indices=[0 1 4 8]>, func = <ufunc 'add'> | |
| def aggregate(self, func): | |
| from .column import MaskedColumn | |
| i0s, i1s = self.indices[:-1], self.indices[1:] | |
| par_col = self.parent_column | |
| masked = isinstance(par_col, MaskedColumn) | |
| reduceat = hasattr(func, 'reduceat') | |
| sum_case = func is np.sum | |
| mean_case = func is np.mean | |
| try: | |
| if not masked and (reduceat or sum_case or mean_case): | |
| if mean_case: | |
| vals = np.add.reduceat(par_col, i0s) / np.diff(self.indices) | |
| else: | |
| if sum_case: | |
| func = np.add | |
| vals = func.reduceat(par_col, i0s) | |
| else: | |
| vals = np.array([func(par_col[i0: i1]) for i0, i1 in izip(i0s, i1s)]) | |
| except Exception: | |
| raise TypeError("Cannot aggregate column '{0}' with type '{1}'" | |
| .format(par_col.info.name, | |
| > par_col.info.dtype)) | |
| E TypeError: Cannot aggregate column 'c' with type '<U3' | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/groups.py:262: TypeError | |
| ______________________________ test_table_filter _______________________________ | |
| def test_table_filter(): | |
| """ | |
| Table groups filtering | |
| """ | |
| def all_positive(table, key_colnames): | |
| colnames = [name for name in table.colnames if name not in key_colnames] | |
| for colname in colnames: | |
| if np.any(table[colname] < 0): | |
| return False | |
| return True | |
| # Negative value in 'a' column should not filter because it is a key col | |
| t = Table.read([' a c d', | |
| ' -2 7.0 0', | |
| ' -2 5.0 1', | |
| ' 0 0.0 4', | |
| ' 1 3.0 5', | |
| ' 1 2.0 -6', | |
| ' 1 1.0 7', | |
| ' 3 3.0 5', | |
| ' 3 -2.0 6', | |
| ' 3 1.0 7', | |
| ], format='ascii') | |
| tg = t.group_by('a') | |
| > t2 = tg.groups.filter(all_positive) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_groups.py:539: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/groups.py:399: in filter | |
| mask[i] = func(group_table, key_colnames) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| table = <Table length=2> | |
| a c d | |
| int64 str4 int64 | |
| ----- ---- ----- | |
| -2 7.0 0 | |
| -2 5.0 1 | |
| key_colnames = ['a'] | |
| def all_positive(table, key_colnames): | |
| colnames = [name for name in table.colnames if name not in key_colnames] | |
| for colname in colnames: | |
| > if np.any(table[colname] < 0): | |
| E TypeError: unorderable types: Column() < int() | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_groups.py:522: TypeError | |
| ______________________________ test_column_filter ______________________________ | |
| def test_column_filter(): | |
| """ | |
| Table groups filtering | |
| """ | |
| def all_positive(column): | |
| if np.any(column < 0): | |
| return False | |
| return True | |
| # Negative value in 'a' column should not filter because it is a key col | |
| t = Table.read([' a c d', | |
| ' -2 7.0 0', | |
| ' -2 5.0 1', | |
| ' 0 0.0 4', | |
| ' 1 3.0 5', | |
| ' 1 2.0 -6', | |
| ' 1 1.0 7', | |
| ' 3 3.0 5', | |
| ' 3 -2.0 6', | |
| ' 3 1.0 7', | |
| ], format='ascii') | |
| tg = t.group_by('a') | |
| > c2 = tg['c'].groups.filter(all_positive) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_groups.py:571: | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/groups.py:301: in filter | |
| mask[i] = func(group_column) | |
| _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| column = <Column name='c' dtype='str4' length=2> | |
| 7.0 | |
| 5.0 | |
| def all_positive(column): | |
| > if np.any(column < 0): | |
| E TypeError: unorderable types: Column() < int() | |
| ../../../../.local/lib/python3.4/site-packages/astropy/table/tests/test_groups.py:554: TypeError | |
| __________________________________ test_alias __________________________________ | |
| def test_alias(): | |
| from ...cosmology import core, WMAP9, WMAP7 | |
| # REMOVE in astropy 0.5 | |
| with catch_warnings() as w: | |
| x = core.DEFAULT_COSMOLOGY() | |
| > assert x == WMAP9 | |
| E assert FlatLambdaCDM(name="WMAP7", H0=70.4 km / (Mpc s), Om0=0.272, Tcmb0=2.725 K, Neff=3.04, m_nu=[ 0. 0. 0.] eV, Ob0=0.0455) == FlatLambdaCDM(name="WMAP9", H0=69.3 km / (Mpc s), Om0=0.286, Tcmb0=2.725 K, Neff=3.04, m_nu=[ 0. 0. 0.] eV, Ob0=0.0463) | |
| ../../../../.local/lib/python3.4/site-packages/astropy/utils/tests/test_state.py:16: AssertionError | |
| 26 failed, 6871 passed, 128 skipped, 22 xfailed, 2 xpassed, 2 error in 800.17 seconds | |
| 1 | |
| >>> |
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