bsipos/fq_count_grep.sh

## fq_count_grep.sh
#!/bin/bash -
set -o nounset
for i in `seq 1 100`;
do
    start=`date +%N`;
    grep -c "^+$" test.fq >/dev/null;
    end=`date +%N`;
    TS=`expr $end - $start`;
    TM=`echo $TS/1000.0 | bc -l`
    echo -e "grep\t1\t$TM" >> count_timing.tsv;
done
	#!/bin/bash -
	set -o nounset
	for i in `seq 1 100`;
	do
	start=`date +%N`;
	grep -c "^+$" test.fq >/dev/null;
	end=`date +%N`;
	TS=`expr $end - $start`;
	TM=`echo $TS/1000.0 \| bc -l`
	echo -e "grep\t1\t$TM" >> count_timing.tsv;
	done