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@bwalsh
bwalsh / example-document-reference-fail.json
Last active March 5, 2021 16:31
example-document-reference-fail.json
{
"resourceType": "DocumentReference",
"id": "example-document-reference-fail",
"meta": {
"profile": [
"http://fhir.ncpi-project-forge.io/StructureDefinition/ncpi-drs-document-reference"
]
},
"status": "current",
"identifier": [
@bwalsh
bwalsh / example-document-reference-id3.json
Last active March 5, 2021 15:49
Example FHIR resource
{
"resourceType": "DocumentReference",
"id": "example-document-reference-id3",
"meta": {
"profile": [
"http://fhir.ncpi-project-forge.io/StructureDefinition/ncpi-drs-document-reference"
]
},
"status": "current",
"identifier": [
@bwalsh
bwalsh / AnVIL-Dashboard-10-28-2019.md
Last active October 28, 2019 17:41

Missing schema:

  • AnVIL_CCDG_WashU_CVD_EOCAD_BioImage_WGS
  • AnVIL_CMG_Broad_Blood_Gazda_WES
  • AnVIL_CMG_Broad_Blood_Gazda_WGS

Bucket missing or malformed:

  • AnVIL_CCDG_NYGC_NP_Autism_SSC_WGS
  • AnVIL_CCDG_WashU_CVD-NP-AI_Controls_VCControls_WGS
@bwalsh
bwalsh / anvil-summary.md
Last active September 5, 2019 15:10

AnVIL Summary

Combined Graph

Draft: For discussion purposes, we combined [ccdg, cmg, 1000g, GTEx] and partially harmonized entities into the following graph.

anvil_summary dot

@bwalsh
bwalsh / anvil-summary
Created September 5, 2019 00:25
# Anvil Summary
## CCDG
![anvil_ccdg](https://user-images.githubusercontent.com/47808/64302575-d890d780-cf38-11e9-9a61-e97db99cb6de.png)
## CMG
![anvil_cmg](https://user-images.githubusercontent.com/47808/64302559-c6169e00-cf38-11e9-8a02-6a5f5b64349b.png)
@bwalsh
bwalsh / AnVIL-CCDG-Participants-Samples.md
Last active August 7, 2019 20:44
AnVIL CCDG Participants & Samples

Participants

The participants were derived from 51 Terra projects assigned to AnVIL.

image

The attribute sets for participant were inconsistent across projects. Only 1 field was shared across most projects.

image image

@bwalsh
bwalsh / CDA-Intersection.md
Last active August 1, 2019 21:21

CDA Entity and Property Intersection

In order to inform the discussions regarding entity mapping and harmonization, we surveyed existing schemas.

Methodology: import relevant schemas, apply minor synonyms (e.g. Case renamed to Subject )

image

@bwalsh
bwalsh / AnVIL-CMG-Participants-Samples.md
Last active August 7, 2019 17:50
AnVIL CMG Participants & Samples

Participants

The participants were derived from 28 Terra projects assigned to AnVIL.

image

The attribute sets for participant were very consistent across projects. Only 1 project had two extra fields.

image

@bwalsh
bwalsh / gist:1afea0a2499b5e81c507dbc24521038e
Created October 30, 2018 21:41
minio s3 config
# cat ~/.aws/credentials
[default]
aws_access_key_id = XXXXXXXXX
aws_secret_access_key = XXXXXX
# cat ~/.aws/config
[default]
region = us-east-1
s3 =
signature_version = s3v4
@bwalsh
bwalsh / webpack production build...
Created January 9, 2017 23:20
git diff tasks/start.js
diff --git a/dcc-portal-ui/tasks/start.js b/dcc-portal-ui/tasks/start.js
index b508b1d..f41a190 100644
--- a/dcc-portal-ui/tasks/start.js
+++ b/dcc-portal-ui/tasks/start.js
@@ -10,7 +10,7 @@ var execSync = require('child_process').execSync;
var opn = require('opn');
var detect = require('./utils/detectPort');
var prompt = require('./utils/prompt');
-var config = require('../config/webpack.config.dev');